RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9730
         (140 letters)



>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex,
           frizzled, fatty acylation, glycosylation, signaling
           protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus
           laevis}
          Length = 316

 Score =  106 bits (265), Expect = 5e-29
 Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 22/160 (13%)

Query: 1   MHCKCHGVSGTCNIRTCWKSLPSKFIEVGKKLVNEYSRAIEIKAGVRTGSLRYS------ 54
             CKCHG+SG+C+I+TCW  L   F ++G  L  ++ +A++++   R      S      
Sbjct: 157 RTCKCHGISGSCSIQTCWLQLAE-FRDIGNHLKIKHDQALKLEMDKRKMRSGNSADNRGA 215

Query: 55  --------STNDLVYVTKSPDYCNFDAKLGSYGTSGRACNKSLTGY-----AGCESMCC- 100
                   + ++L+++  SPDYC  +  LG  GT GR C +S           C+ +C  
Sbjct: 216 IADAFSSVAGSELIFLEDSPDYCLKNISLGLQGTEGRECLQSGKNLSQWERRSCKRLCTD 275

Query: 101 -GRGYSTKLIEKIERCQCKYHYCCYVKCKICHTWIERQYC 139
            G     K  E I  C CK+H+CC VKC+ C   + + +C
Sbjct: 276 CGLRVEEKKTEIISSCNCKFHWCCTVKCEQCKQVVIKHFC 315


>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding,
           nucleus, phosphorylation, chromatin regulator, UBL
           conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo
           sapiens}
          Length = 159

 Score = 27.9 bits (62), Expect = 0.96
 Identities = 2/19 (10%), Positives = 4/19 (21%)

Query: 115 CQCKYHYCCYVKCKICHTW 133
               +H+          T 
Sbjct: 3   SSHHHHHHSSGLVPRGSTS 21


>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
           receptor/immune system complex; 3.80A {Homo sapiens}
           SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
           PDB: 3loh_E
          Length = 897

 Score = 26.8 bits (58), Expect = 3.1
 Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 6/86 (6%)

Query: 51  LRYSSTNDLVYVTKSPDYCNFDAKLGSYGTSGRACNKSLTGYAGCESMCCGRGYSTKLIE 110
           L Y +T D   +  S +  +           G  C  +  G   C +     G   +   
Sbjct: 125 LCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVI-NGQFVERCW 183

Query: 111 KIERCQCK-----YHYCCYVKCKICH 131
               CQ         + C  +   CH
Sbjct: 184 THSHCQKVCPTICKSHGCTAEGLCCH 209


>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A
          {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B
          Length = 691

 Score = 25.2 bits (54), Expect = 8.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 46 VRTGSLRYSSTNDLVYVT 63
          V TGS  ++ T+D +Y++
Sbjct: 28 VATGSQEHAGTDDYIYLS 45


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.136    0.467 

Gapped
Lambda     K      H
   0.267   0.0430    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,184,320
Number of extensions: 119078
Number of successful extensions: 497
Number of sequences better than 10.0: 1
Number of HSP's gapped: 467
Number of HSP's successfully gapped: 87
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)