RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9730
         (140 letters)



>d2g58a1 a.133.1.2 (A:1-133) Snake phospholipase A2 {Snake (Daboia
           russellii pulchella), different isoforms [TaxId: 97228]}
          Length = 121

 Score = 26.0 bits (57), Expect = 1.1
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 100 CGRGYSTKLIEKIERCQCKYHYCCYVKCKICHTWIER 136
           CG G      +  +RC C  H CCY     C+   +R
Sbjct: 28  CGWGGKGTPKDATDRC-CFVHDCCYGNLPDCNPKSDR 63


>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain
          {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 85

 Score = 24.9 bits (54), Expect = 2.2
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 2  HCKCHGVSGTCNIRTCWKSLPSKFIEVGKKLVNEYSRAIEI 42
            K   ++ T   R    ++  K ++V      + SR + I
Sbjct: 45 LEKNGYITRTVTKRGQILNITEKGLDVLYTEFADLSRILAI 85


>d1ppaa_ a.133.1.2 (A:) Snake phospholipase A2 {Eastern cottonmouth
           snake (Agkistrodon piscivorus piscivorus) [TaxId: 8716]}
          Length = 121

 Score = 24.9 bits (54), Expect = 2.5
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 100 CGRGYSTKLIEKIERCQCKYHYCCYVKCKICHTWIER 136
           CG G+  +  +  +RC C  H CCY K   C+   +R
Sbjct: 28  CGWGHRGQPKDATDRC-CFVHKCCYKKLTDCNHKTDR 63


>d1mc2a_ a.133.1.2 (A:) Snake phospholipase A2 {Hundred-pace snake
           (Agkistrodon acutus) [TaxId: 36307]}
          Length = 122

 Score = 24.9 bits (54), Expect = 2.7
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 100 CGRGYSTKLIEKIERCQCKYHYCCYVKCKICHTWIER 136
           CG G   + ++  +RC C  H CCY K   C +  +R
Sbjct: 28  CGVGGRGEPLDATDRC-CFVHKCCYKKLTDCDSKKDR 63


>d1jiaa_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon
           halys) [TaxId: 8714]}
          Length = 122

 Score = 24.9 bits (54), Expect = 2.9
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 100 CGRGYSTKLIEKIERCQCKYHYCCYVKCKICHTWIER 136
           CG G   K  +  +RC C  H CCY K   C    + 
Sbjct: 28  CGSGGRGKPKDATDRC-CFVHDCCYEKVTGCDPKWDD 63


>d1gmza_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Bothrops
           pirajai), piratoxin III [TaxId: 113192]}
          Length = 122

 Score = 24.1 bits (52), Expect = 4.8
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 100 CGRGYSTKLIEKIERCQCKYHYCCYVKCKICHTWIER 136
           CG G      +  +RC C  H CCY K   C    +R
Sbjct: 28  CGVGGRGGPKDATDRC-CFVHDCCYGKLTSCKPKTDR 63


>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
           domain {Clostridium acetobutylicum [TaxId: 1488]}
          Length = 141

 Score = 24.3 bits (52), Expect = 5.0
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 103 GYSTKLIEKIERCQCKYHYCCYVKCKICHTWIERQYCN 140
           G S +LI +I R +         K +I + + +    +
Sbjct: 19  GKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVS 56


>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 239

 Score = 24.2 bits (52), Expect = 6.1
 Identities = 4/34 (11%), Positives = 10/34 (29%)

Query: 98  MCCGRGYSTKLIEKIERCQCKYHYCCYVKCKICH 131
           +      + +   ++E  Q  Y        +I  
Sbjct: 159 IFSADRPNVQEPGRVEALQQPYVEALLSYTRIKR 192


>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
           cereus [TaxId: 1396]}
          Length = 281

 Score = 24.1 bits (51), Expect = 8.7
 Identities = 6/43 (13%), Positives = 12/43 (27%)

Query: 98  MCCGRGYSTKLIEKIERCQCKYHYCCYVKCKICHTWIERQYCN 140
             CG GY   ++  +     KY      +  +       +   
Sbjct: 34  YGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP 76


>d1ca1a2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain
          {Clostridium perfringens, different strains [TaxId:
          1502]}
          Length = 121

 Score = 23.4 bits (50), Expect = 8.9
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 7/36 (19%)

Query: 28 VGKKLVNEYSRAIEIKAGVRTGSLRYSSTNDLVYVT 63
          VGK  V E        A + T   + + T+D +Y  
Sbjct: 2  VGKN-VKEL------VAYISTSGEKDAGTDDYMYFG 30


>d1m8ra_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon
           halys) [TaxId: 8714]}
          Length = 124

 Score = 23.3 bits (50), Expect = 9.6
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 100 CGRGYSTKLIEKIERCQCKYHYCCYVKCKICHTWIER 136
           CG G   +  +  +RC C  H CCY K   C   ++ 
Sbjct: 28  CGWGGQGRPQDATDRC-CFVHDCCYGKVTGCDPKMDV 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.467 

Gapped
Lambda     K      H
   0.267   0.0579    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 589,820
Number of extensions: 27569
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 62
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (22.6 bits)