BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9732
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 53/64 (82%)
Query: 1 MLQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALP 60
+L+G+WM+EF+APWCPAC+ ++ W+ ++ W +DL +N+A+VDVT PGLSGRF++ ALP
Sbjct: 20 LLEGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALP 79
Query: 61 TIFQ 64
TI+
Sbjct: 80 TIYH 83
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDL---NINVAQVDVTVSPGLSGRFMVTALPT- 61
WMVEF+APWC CK +E W + ++ + +A VD TV+ L+ R+ + PT
Sbjct: 28 WMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTI 87
Query: 62 -IFQEG 66
IFQ+G
Sbjct: 88 KIFQKG 93
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 10/67 (14%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLN-----INVAQVDVTVSPGLSGRFMVTALPT 61
+VEF+APWC CK K+ EY A++L+ I +A+VD T L+ RF V+ PT
Sbjct: 151 LVEFYAPWCGHCK---KLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPT 207
Query: 62 --IFQEG 66
IF++G
Sbjct: 208 LKIFRKG 214
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLN--INVAQVDVTVSPGLSGRFMVTALPTI 62
++EF+APWC CKQ +++ + +D + I VA++D T + L+ RF V+ PTI
Sbjct: 36 LLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTI 93
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
G W+VEF+APWC C+++ W++ + +D+ + V V+ L G++ V PTI
Sbjct: 36 GLWLVEFYAPWCGHCQRLTPEWKKAATALKDV-VKVGAVNADKHQSLGGQYGVQGFPTIK 94
Query: 64 QEGIRGNIERGY 75
G N Y
Sbjct: 95 IFGANKNKPEDY 106
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 10/67 (14%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLN-----INVAQVDVTVSPGLSGRFMVTALPT 61
+VEF+APWC CK K+ EY A++L+ I +A+VD T L+ RF V+ PT
Sbjct: 28 LVEFYAPWCGHCK---KLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDVSGYPT 84
Query: 62 --IFQEG 66
IF++G
Sbjct: 85 LKIFRKG 91
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 1 MLQGEWMVEFFAPWCPACKQMEKVWQEYS-----GWAQDLNINVAQVDVTVSPGLSGRFM 55
+ +G ++F+APWC CK + W+E S G A + +A+VD T + ++
Sbjct: 21 IAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLA---GVKIAEVDCTAERNICSKYS 77
Query: 56 VTALPTIFQEGIRGNIERGYFNIAKEIEELFR 87
V PT+ RG + + ++++ L R
Sbjct: 78 VRGYPTLLL--FRGGKKVSEHSGGRDLDSLHR 107
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 1 MLQGEWMVEFFAPWCPACKQMEKVWQEYS-----GWAQDLNINVAQVDVTVSPGLSGRFM 55
+ +G ++F+APWC CK + W+E S G A + +A+VD T + ++
Sbjct: 14 IAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLA---GVKIAEVDCTAERNICSKYS 70
Query: 56 VTALPTIFQEGIRGNIERGYFNIAKEIEELFR 87
V PT+ RG + + ++++ L R
Sbjct: 71 VRGYPTLLL--FRGGKKVSEHSGGRDLDSLHR 100
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 1 MLQGEWMVEFFAPWCPACKQMEKVWQEYSG--WAQDLNINVAQVDVTVSPGLSGRFMVTA 58
+ +G ++F+APWC CK + W+E S + + +A+VD T + ++ V
Sbjct: 19 IAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRG 78
Query: 59 LPTIFQEGIRGNIERGYFNIAKEIEELFR 87
PT+ RG + + ++++ L R
Sbjct: 79 YPTLLL--FRGGKKVSEHSGGRDLDSLHR 105
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYS-GWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
++EF+APWC CK +E ++E ++D NI +A++D T + + + V PTI+
Sbjct: 49 LIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIY 105
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLN--INVAQVDVTVSPGLSGRFMVTALPTI 62
++EF+APWC CKQ +++ + +D + I VA++D T + L+ +F V+ PTI
Sbjct: 38 LLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTI 95
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEY-SGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
++EF+APWC CK +E ++E ++D NI +A++D T + + + V PTI+
Sbjct: 374 LIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIY 430
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLN--INVAQVDVTVSPGLSGRFMVTALPT 61
G +VEFFAPWC K++ EY A L + +A+VD T + ++ V+ PT
Sbjct: 22 GLMLVEFFAPWCGHAKRL---APEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPT 78
Query: 62 --IFQEG 66
IF++G
Sbjct: 79 LKIFRDG 85
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 7 MVEFFAPWCPACKQMEKVW----QEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
++EF+APWC CKQ+E ++ ++Y G ++ +A++D T + + ++ V PTI
Sbjct: 29 LIEFYAPWCGHCKQLEPIYTSLGKKYKGQK---DLVIAKMDATANDITNDQYKVEGFPTI 85
Query: 63 F 63
+
Sbjct: 86 Y 86
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLN--INVAQVDVTVSPGLSGRFMVTALPT 61
G +VEFFAPWC CK++ EY A L + +A+VD T + ++ V+ PT
Sbjct: 22 GLMLVEFFAPWCGHCKRLA---PEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPT 78
Query: 62 --IFQEG 66
IF++G
Sbjct: 79 LKIFRDG 85
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSG--WAQDLNINVAQVDVTVSPGLSGRFMVTALPTI-- 62
+VEF+APWC CK + + + +G A+ I +A+VD T L+ ++ V PTI
Sbjct: 28 LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKF 87
Query: 63 FQEG 66
F+ G
Sbjct: 88 FRNG 91
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDL--NINVAQVDVTVSPGLSGRFMVTALPT--I 62
+V+FFAPWC C+ + + +E A+D + V +V+V PGL+ R+ V ++PT +
Sbjct: 54 LVDFFAPWCGPCRLVSPILEEL---ARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVL 110
Query: 63 FQEG 66
F+ G
Sbjct: 111 FRRG 114
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V+F+APWC C+QM +Q + + +A++D P ++GR + +P +F
Sbjct: 68 LVDFWAPWCGPCRQMAPQFQAAAATLAG-QVRLAKIDTQAHPAVAGRHRIQGIPAFILFH 126
Query: 65 EG 66
+G
Sbjct: 127 KG 128
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach,
Oxidized Form
Length = 104
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 11/68 (16%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
MV+F+APWC CK ++++ +EYSG I V +++ +PG++ ++ + ++PT+
Sbjct: 21 MVDFWAPWCGPCKLIAPVIDELAKEYSG-----KIAVYKLNTDEAPGIATQYNIRSIPTV 75
Query: 63 --FQEGIR 68
F+ G R
Sbjct: 76 LFFKNGER 83
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 11/68 (16%)
Query: 7 MVEFFAPWCPACK----QMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
MV+F+APWC CK ++++ +EYSG I V +++ +PG++ ++ + ++PT+
Sbjct: 22 MVDFWAPWCGPCKLIAPVIDELAKEYSG-----KIAVYKLNTDEAPGIATQYNIRSIPTV 76
Query: 63 --FQEGIR 68
F+ G R
Sbjct: 77 LFFKNGER 84
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+ EFFAPWC CK M + + + + NI +AQ+D T + L + P++
Sbjct: 35 LAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSL 90
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 7 MVEFFAPWCPACKQMEKVWQE----YSGWAQDLNINVAQVDVT 45
+V ++APWC CK++ +QE Y+ D + +A++D T
Sbjct: 380 LVLYYAPWCGHCKRLAPTYQELADTYANATSD--VLIAKLDHT 420
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
Length = 116
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V+F+A WC CK + V +E + + ++ VA++DV +P + F V ++PT +F+
Sbjct: 29 LVDFWATWCGPCKMVAPVLEEIAT-ERATDLTVAKLDVDTNPETARNFQVVSIPTLILFK 87
Query: 65 EG 66
+G
Sbjct: 88 DG 89
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+V+F+A WC C+ +E++ +EY G + VA++DV +P + R+ V ++PT+
Sbjct: 23 LVDFWAEWCAPCRXIAPILEEIAKEYEG-----KLLVAKLDVDENPKTAXRYRVXSIPTV 77
Query: 63 --FQEG 66
F++G
Sbjct: 78 ILFKDG 83
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+V+F+A WC C+ +E++ +EY G + VA++DV +P + R+ V ++PT+
Sbjct: 22 LVDFWAEWCAPCRXIAPILEEIAKEYEG-----KLLVAKLDVDENPKTAXRYRVXSIPTV 76
Query: 63 --FQEG 66
F++G
Sbjct: 77 ILFKDG 82
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V+F+A WC CK + V +E + + ++ VA++DV +P + F V ++PT +F+
Sbjct: 34 LVDFWATWCGPCKMVAPVLEEIAT-ERATDLTVAKLDVDTNPETARNFQVVSIPTLILFK 92
Query: 65 EG 66
+G
Sbjct: 93 DG 94
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
G +V+F+A WC C+ M V +E++ D + VA+++V +P + +F + ++PT+
Sbjct: 18 GPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDENPETTSQFGIMSIPTL 75
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
G +V+F+A WC C+ M V +E++ D + VA+++V +P + +F + ++PT+
Sbjct: 18 GPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDENPETTSQFGIMSIPTL 75
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDL-NINVAQVDVTVS 47
VEF+APWC CKQ+ +W + +D NI +A++D T +
Sbjct: 271 FVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTAN 312
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK +E++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILEEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPTIF 63
+PT+
Sbjct: 75 IPTLL 79
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+++F+APWC C+ ++ E + + + +V+ P LS RF + ++PTI
Sbjct: 59 VIDFWAPWCGPCRSFAPIFAETAA-ERAGKVRFVKVNTEAEPALSTRFRIRSIPTI 113
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+V+F+A WC C+ M V +E++ D + VA+++V +P + +F + ++PT+
Sbjct: 21 LVDFWAAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDENPETTSQFGIMSIPTL 75
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
Length = 108
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ +EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIAEEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPTIF 63
+PT+
Sbjct: 75 IPTLL 79
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+V+F+A WC C+ M V +E++ D + VA+++V +P + +F + ++PT+
Sbjct: 21 LVDFWAAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDENPETTSQFGIMSIPTL 75
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+V+F+A WC CK +E++ +EY+G I + +V+V P L+ F + ++PTI
Sbjct: 55 IVDFYADWCGPCKMVAPILEELSKEYAG-----KIYIYKVNVDKEPELARDFGIQSIPTI 109
Query: 63 FQEGIRGNIERGYFNIAKE 81
+ ++G + ++KE
Sbjct: 110 WFVPMKGEPQVNMGALSKE 128
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDL-NINVAQVDVTVS 47
VEF+APWC CKQ+ +W + +D NI +A++D T +
Sbjct: 29 FVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTAN 70
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ + +
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRS 74
Query: 59 LPT--IFQEG 66
+PT +F+ G
Sbjct: 75 IPTLLLFKNG 84
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGHCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPTIF 63
+PT+
Sbjct: 75 IPTLL 79
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 3 QGEWMVEFFAPWCPACKQMEKVWQE----YSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC +CK + V +E Y G A ++ ++DV +P + ++ V +
Sbjct: 19 SGVQLVDFWATWCGSCKMIAPVLEELAADYEGKA-----DILKLDVDENPSTAAKYEVMS 73
Query: 59 LPT--IFQEG 66
+PT +F++G
Sbjct: 74 IPTLIVFKDG 83
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPT--IFQEG 66
+PT +F+ G
Sbjct: 75 IPTLLLFKNG 84
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPTIF 63
+PT+
Sbjct: 75 IPTLL 79
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20
Structures
Length = 108
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPTIF 63
+PT+
Sbjct: 75 IPTLL 79
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
Length = 222
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ +
Sbjct: 30 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 84
Query: 59 LPTIF 63
+PT+
Sbjct: 85 IPTLL 89
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPTIF 63
+PT+
Sbjct: 75 IPTLL 79
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPTIF 63
+PT+
Sbjct: 75 IPTLL 79
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPTIF 63
+PT+
Sbjct: 75 IPTLL 79
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPTIF 63
+PT+
Sbjct: 75 IPTLL 79
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPTIF 63
+PT+
Sbjct: 75 IPTLL 79
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPT--IFQEG 66
+PT +F+ G
Sbjct: 75 IPTLLLFKNG 84
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+V+F+A WC CK +E++ +EY+G I + +V+V P L+ F + +PTI
Sbjct: 55 IVDFYADWCGPCKMVAPILEELSKEYAG-----KIYIYKVNVDKEPELARDFGIQGIPTI 109
Query: 63 FQEGIRGNIERGYFNIAKE 81
+ ++G + ++KE
Sbjct: 110 WFVPMKGEPQVNMGALSKE 128
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPTIF 63
+PT+
Sbjct: 75 IPTLL 79
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In
Hexagonal (P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In
Hexagonal (P61) Space Group
Length = 108
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++ + EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDDIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPT--IFQEG 66
+PT +F+ G
Sbjct: 75 IPTLLLFKNG 84
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+G + +F+APWC CK + V +E D + + ++DV + +G++ V ++PT+
Sbjct: 17 EGVVLADFWAPWCGPCKMIAPVLEELDQEMGD-KLKIVKIDVDENQETAGKYGVMSIPTL 75
Query: 63 F 63
Sbjct: 76 L 76
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPT--IFQEG 66
+PT +F+ G
Sbjct: 75 IPTLLLFKNG 84
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Query: 3 QGEWMVEFFAPWCPACKQMEKVWQE----YSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK + V +E Y G A ++ ++DV +P + ++ V +
Sbjct: 20 SGVQLVDFWATWCGTCKMIAPVLEELAADYEGKA-----DILKLDVDENPSTAAKYEVMS 74
Query: 59 LPT--IFQEG 66
+PT +F++G
Sbjct: 75 IPTLIVFKDG 84
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGPCKLIASILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPT--IFQEG 66
+PT +F+ G
Sbjct: 75 IPTLLLFKNG 84
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 11/68 (16%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
MV+F+APWC K ++++ +EYSG I V +++ +PG++ ++ + ++PT+
Sbjct: 22 MVDFWAPWCGPSKLIAPVIDELAKEYSG-----KIAVYKLNTDEAPGIATQYNIRSIPTV 76
Query: 63 --FQEGIR 68
F+ G R
Sbjct: 77 LFFKNGER 84
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + +++
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYIERG 74
Query: 59 LPTIF 63
+PT+
Sbjct: 75 IPTLL 79
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
Length = 108
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
G +V+F+A WC CK + + E + Q + VA++++ +PG + ++ + +PT
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADDYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 62 -IFQEG 66
+F+ G
Sbjct: 79 LLFKNG 84
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+V+F+APWC C+ + V E +G +D + +++ SP ++ + + ++PTI
Sbjct: 23 LVDFWAPWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDESPNVASEYGIRSIPTIM 78
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Query: 3 QGEWMVEFFAPWCPACKQMEKVWQE----YSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK + V +E Y G A ++ ++DV +P + ++ V +
Sbjct: 20 SGVQLVDFWATWCGPCKMIAPVLEELAADYEGKA-----DILKLDVDENPSTAAKYEVMS 74
Query: 59 LPT--IFQEG 66
+PT +F++G
Sbjct: 75 IPTLIVFKDG 84
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQV--DVTVSPGLSGRFMVTALPTI 62
+VEF+APWC CK++ +++ + D + VA V D+ + L ++ V PT+
Sbjct: 39 LVEFYAPWCGHCKKLSSTFRK-AAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTL 95
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
Query: 10 FFAPWCPAC----KQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
FFA WC AC +M+K+ Q+Y G I + +VD+ + L+ +F V +LPTI
Sbjct: 49 FFAKWCQACTMQSTEMDKL-QKYYGKR----IYLLKVDLDKNESLARKFSVKSLPTI 100
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ +
Sbjct: 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 75
Query: 59 LPTIF 63
PT+
Sbjct: 76 TPTLL 80
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCVWCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPT--IFQEG 66
+PT +F+ G
Sbjct: 75 IPTLLLFKNG 84
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC C+ ++++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGPCEMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPTIF 63
+PT+
Sbjct: 75 IPTLL 79
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
Length = 108
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 13/71 (18%)
Query: 3 QGEWMVEFFAPWCPACKQM-----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVT 57
G +V+F+A WC AC +M +++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWC-ACAKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIR 73
Query: 58 ALPT--IFQEG 66
+PT +F+ G
Sbjct: 74 GIPTLLLFKNG 84
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V+F+A WC K + V +E + + ++ VA++DV +P + F V ++PT +F+
Sbjct: 31 LVDFWATWCGPSKMVAPVLEEIAT-ERATDLTVAKLDVDTNPETARNFQVVSIPTLILFK 89
Query: 65 EG 66
+G
Sbjct: 90 DG 91
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+F+A WC C+Q +E + EY I + ++++ +PG + ++ V ++PT
Sbjct: 27 LVDFWAAWCGPCRQIAPSLEAIAAEYGD-----KIEIVKLNIDENPGTAAKYGVMSIPTL 81
Query: 62 -IFQEG 66
++Q G
Sbjct: 82 NVYQGG 87
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of
Human Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ 64
W+VEFFA W C+ ++ + S +N +VDV +S R+ V+ P Q
Sbjct: 29 WIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQ 87
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 5 EWMVEFFAPWCPACKQME----KVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALP 60
+ +++F+A WC CK M+ K+ Q Y ++ + DV SP ++ VTA+P
Sbjct: 32 KLVIDFYATWCGPCKMMQPHLTKLIQAYP------DVRFVKCDVDESPDIAKECEVTAMP 85
Query: 61 T 61
T
Sbjct: 86 T 86
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin
C35a
Length = 128
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC K ++++ EY G + VA++++ +PG + ++ +
Sbjct: 40 DGAILVDFWAEWCGPAKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 94
Query: 59 LPTIF 63
+PT+
Sbjct: 95 IPTLL 99
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDL-NINVAQVDVTVSPGLSGRFMVTALPT 61
+V+FFA WC C+ + + A+++ + A+VDV + + ++ VTA+PT
Sbjct: 23 VVDFFAQWCGPCRN---IAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPT 75
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSG--WAQDLNINVAQVDVTVSPGLSGRFMVTALPT 61
W+V+FFAPW P + + ++ S + Q + V +D T+ GL + + A PT
Sbjct: 458 WLVDFFAPWSPPSRALLPELRKASTLLYGQ---LKVGTLDCTIHEGLCNMYNIQAYPT 512
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVD 43
WMV+F++PW + + W+ + L INV VD
Sbjct: 566 WMVDFYSPWSHPSQVLMPEWKRMARTLTGL-INVGSVD 602
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of
Human Thioredoxin-Like Protein 2
Length = 130
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDL-NINVAQVDVTVSPGLSGRFMVTALPTIF 63
+V F+APW P C QM +V E A++L ++ +++ P +S ++ ++++PT
Sbjct: 42 VVHFWAPWAPQCAQMNEVMAEL---AKELPQVSFVKLEAEGVPEVSEKYEISSVPTFL 96
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+++FFA WC CK + E S D N+ V +VDV ++ + ++++PT +
Sbjct: 24 VLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDECEDIAMEYNISSMPTFVFLK 82
Query: 65 EGIRGNIERGYFNIAKEIEELFR 87
G++ +E AK +E++ +
Sbjct: 83 NGVK--VEEFAGANAKRLEDVIK 103
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 3 QGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC K ++++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGPSKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRG 74
Query: 59 LPT--IFQEG 66
+PT +F+ G
Sbjct: 75 IPTLLLFKNG 84
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human
Txnl2
Length = 153
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDL-NINVAQVDVTVSPGLSGRFMVTALPTIF 63
+V F+APW P C QM +V E A++L ++ +++ P +S ++ ++++PT
Sbjct: 36 VVHFWAPWAPQCAQMNEVMAEL---AKELPQVSFVKLEAEGVPEVSEKYEISSVPTFL 90
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+++FFA WC CK + E S D N+ V +VDV ++ + ++++PT +
Sbjct: 29 VLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDECEDIAMEYNISSMPTFVFLK 87
Query: 65 EGIRGNIERGYFNIAKEIEELFR 87
G++ +E AK +E++ +
Sbjct: 88 NGVK--VEEFAGANAKRLEDVIK 108
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+G + +F+APWC K + V +E D + + ++DV + +G++ V ++PT+
Sbjct: 17 EGVVLADFWAPWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDENQETAGKYGVMSIPTL 75
Query: 63 F 63
Sbjct: 76 L 76
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 3 QGEWMVEFFAPWCPACKQMEKVWQE----YSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A WC K + V +E Y G A ++ ++DV +P + ++ V +
Sbjct: 20 SGVQLVDFWATWCGTSKMIAPVLEELAADYEGKA-----DILKLDVDENPSTAAKYEVMS 74
Query: 59 LPT--IFQEG 66
+PT +F++G
Sbjct: 75 IPTLIVFKDG 84
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+V+F+A WC CK ++++ +EY G I + +VD L+G F + ++P+I
Sbjct: 42 IVDFYADWCGPCKMVAPILDELAKEYDG-----QIVIYKVDTEKEQELAGAFGIRSIPSI 96
Query: 63 F 63
Sbjct: 97 L 97
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
G +V+FFA WC C+++ ++ + +D + +VDV + + + V+++P +F
Sbjct: 24 GLVLVDFFATWCGPCQRLGQILPSIAEANKD--VTFIKVDVDKNGNAADAYGVSSIPALF 81
Query: 64 QEGIRGN 70
GN
Sbjct: 82 FVKKEGN 88
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+G + +F+APWC K + V +E D + + ++DV + +G++ V ++PT+
Sbjct: 17 EGVVLADFWAPWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDENQETAGKYGVMSIPTL 75
Query: 63 F 63
Sbjct: 76 L 76
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin
W28a Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin
W28a Mutant
Length = 106
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 3 QGEWMVEFFAPWCPACKQMEKVWQE----YSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
G +V+F+A C CK + V +E Y G A ++ ++DV +P + ++ V +
Sbjct: 19 SGVQLVDFWATACGPCKMIAPVLEELAADYEGKA-----DILKLDVDENPSTAAKYEVMS 73
Query: 59 LPT--IFQEG 66
+PT +F++G
Sbjct: 74 IPTLIVFKDG 83
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 5 EWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI-- 62
+ +V F CP CK MEKV ++ A + ++ VD P L +PT+
Sbjct: 21 DAIVFFHKNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEARPELMKELGFERVPTLVF 78
Query: 63 FQEGIRGNIERGYFNIAKEIEELF 86
++G + G N +E++ L+
Sbjct: 79 IRDGKVAKVFSGIMN-PRELQALY 101
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli
Thioredoxin With An Arginine Insertion In The Active
Site
Length = 109
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Query: 3 QGEWMVEFFAPWCP-ACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVT 57
G +V+F+A WC CK ++++ EY G + VA++++ +PG + ++ +
Sbjct: 20 DGAILVDFWAEWCGRPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIR 74
Query: 58 ALPTIF 63
+PT+
Sbjct: 75 GIPTLL 80
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
Length = 519
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSG----WAQDLNINVAQVDVTVSPGLSGRFMVTALPT 61
W VEFFA WC W+E + W LN+ V + + F + PT
Sbjct: 33 WAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPT 92
Query: 62 I 62
+
Sbjct: 93 V 93
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT 61
+V+FFA WC CK + +++E S + + +VDV + ++ ++A+PT
Sbjct: 28 VVDFFATWCGPCKTIAPLFKELS---EKYDAIFVKVDVDKLEETARKYNISAMPT 79
>pdb|1FO5|A Chain A, Solution Structure Of Reduced Mj0307
Length = 85
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 10 FFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGIRG 69
F +P CP C ++V +E + D + V ++V +P + + + A+PTI I G
Sbjct: 9 FTSPMCPHCPAAKRVVEEVANEMPDA-VEVEYINVMENPQKAMEYGIMAVPTIV---ING 64
Query: 70 NIE 72
++E
Sbjct: 65 DVE 67
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT 61
+V+FFA WC CK + +++E S + + +VDV + ++ ++A+PT
Sbjct: 37 VVDFFATWCGPCKTIAPLFKELS---EKYDAIFVKVDVDKLEETARKYNISAMPT 88
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Query: 7 MVEFFAPWCPACK----QMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+V+F+A WC CK + ++ +E++G + VA+V++ +P + V ++PT+
Sbjct: 24 LVDFWAEWCGPCKMIGPALGEIGKEFAG-----KVTVAKVNIDDNPETPNAYQVRSIPTL 78
Query: 63 F 63
Sbjct: 79 M 79
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT 61
+V+F A WCP CK + ++ E + + N+ +VDV ++ + V A+PT
Sbjct: 30 VVDFTASWCPPCKMIAPIFAELA--KKFPNVTFLKVDVDELKAVAEEWNVEAMPT 82
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT 61
+++F A WC C ++++ ++ + + + +DV + P L+ + + ALPT
Sbjct: 44 VIKFGAVWCKPCNKIKEYFKNQLNYYY---VTLVDIDVDIHPKLNDQHNIKALPT 95
>pdb|2H30|A Chain A, Crystal Structure Of The N-Terminal Domain Of Pilb From
Neisseria Gonorrhoeae
Length = 164
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 11/48 (22%)
Query: 7 MVEFFAPWCPAC----KQMEKVWQEYSGWAQDLNINVAQVDVTVSPGL 50
+++F+A WCP C Q EK WAQD + A + SPG
Sbjct: 42 LIKFWASWCPLCLSELGQAEK-------WAQDAKFSSANLITVASPGF 82
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 1 MLQGE--WMVEFFAPWCPACKQMEKVWQEYSGWAQDL--NINVAQVDVTVSPGLSGRFMV 56
+LQG+ W+V+F+APWC C+ E+ A+ + + +VD P + +
Sbjct: 17 VLQGKTHWVVDFYAPWCGPCQNFAP---EFELLARMIKGKVRAGKVDCQAYPQTCQKAGI 73
Query: 57 TALPTI 62
A P++
Sbjct: 74 KAYPSV 79
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
Length = 121
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 7 MVEFFAPWCPACKQMEKVWQE----YSGWAQDLNINVAQVDVTVS 47
++EF+APWC CK + ++E Y+ + +A+VD T +
Sbjct: 29 LIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN 73
>pdb|2FY6|A Chain A, Structure Of The N-Terminal Domain Of Neisseria
Meningitidis Pilb
Length = 143
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 11/48 (22%)
Query: 7 MVEFFAPWCPAC----KQMEKVWQEYSGWAQDLNINVAQVDVTVSPGL 50
+++F+A WCP C Q EK WAQD + A + SPG
Sbjct: 27 LIKFWASWCPLCLSELGQTEK-------WAQDAKFSSANLITVASPGF 67
>pdb|2JZR|A Chain A, Solution Structure Of The Oxidized Form (Cys67-Cys70) Of
The N-Terminal Domain Of Pilb From N. Meningitidis.
pdb|2JZS|A Chain A, Solution Structure Of The Reduced Form Of The N-Terminal
Domain Of Pilb From N. Meningitidis.
pdb|2K9F|A Chain A, Structural Features Of The Complex Between The Dsbd N-
Terminal And The Pilb N-Terminal Domains From Neisseria
Meningitidis
Length = 144
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 11/48 (22%)
Query: 7 MVEFFAPWCPAC----KQMEKVWQEYSGWAQDLNINVAQVDVTVSPGL 50
+++F+A WCP C Q EK WAQD + A + SPG
Sbjct: 28 LIKFWASWCPLCLSELGQTEK-------WAQDAKFSSANLITVASPGF 68
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 7 MVEFFAPWCPACK----QMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+V+F A WC CK ++EK+ + G + +A+VD+ L+ + V+A+PT+
Sbjct: 35 VVDFHAQWCGPCKILGPRLEKMVAKQHG-----KVVMAKVDIDDHTDLAIEYEVSAVPTV 89
Query: 63 F 63
Sbjct: 90 L 90
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
W V F++P C C + W+E++ L + + V+ L V + P++F
Sbjct: 117 WFVNFYSPGCSHCHDLAPTWREFAKEVDGL-LRIGAVNCGDDRMLCRMKGVNSYPSLF 173
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDL-NINVAQVDVTVSPGLSGRFMVTALPTI--F 63
+V+F+A WC C + + +E A+D + +++ +P ++ R+ V +LPT+ F
Sbjct: 20 VVDFWAEWCAPCLILAPIIEEL---AEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFF 76
Query: 64 QEG 66
++G
Sbjct: 77 KDG 79
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina
Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina
Mazei
Length = 140
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+V F++P CP CK E ++EY+ + ++++ +P + ++ V PT
Sbjct: 28 VVXFYSPACPYCKAXEPYFEEYAKEYGSSAV-FGRINIATNPWTAEKYGVQGTPTF 82
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 3 QGEWMVEFFAPWCPACKQMEKVW----QEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
+ W VEFFA WC C W ++ W L + + + F +
Sbjct: 30 RSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPG 89
Query: 59 LPTI 62
PT+
Sbjct: 90 FPTV 93
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V+FFA WC CK++ ++E S + +VDV ++ + +T++PT +++
Sbjct: 30 IVDFFAEWCGPCKRIAPFYEECSKTYTKMVF--IKVDVDEVSEVTEKENITSMPTFKVYK 87
Query: 65 EG 66
G
Sbjct: 88 NG 89
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange
Protein, Thioredoxin Family Protein From Chlorobium
Tepidum Tls
Length = 165
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 8/34 (23%)
Query: 2 LQGE-WMVEFFAPWCPACK-------QMEKVWQE 27
L+G+ ++V FFA WCP C+ Q++K W
Sbjct: 32 LKGKAYIVNFFATWCPPCRSEIPDXVQVQKTWAS 65
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 7 MVEFFAPWCPACK----QMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+FFA WC CK +EK ++YS A ++DV ++ + V+++PT
Sbjct: 30 VVDFFATWCGPCKMIAPMIEKFAEQYSDAA------FYKLDVDEVSDVAQKAEVSSMPTL 83
Query: 62 IFQEG 66
IF +G
Sbjct: 84 IFYKG 88
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 7 MVEFFAPWCPACK----QMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+FFA WC CK +EK ++YS A ++DV ++ + V+++PT
Sbjct: 23 VVDFFATWCGPCKMIAPMIEKFAEQYSDAA------FYKLDVDEVSDVAQKAEVSSMPTL 76
Query: 62 IFQEG 66
IF +G
Sbjct: 77 IFYKG 81
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSG-----WAQDLNINVAQVDVTVSPGLSGRFMVTALPT 61
+V F+A WC + + +++E S + + + A+VD ++ R+ ++ PT
Sbjct: 26 LVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPT 85
Query: 62 --IFQEG 66
+F+ G
Sbjct: 86 LKLFRNG 92
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT 61
+++F+A WC CK + V+++ S + +VDV ++ + A+PT
Sbjct: 37 VIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPT 91
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 9/61 (14%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+V+F+APWC C+ +E++ +EY G + + +NV + +P + ++ + ++PT+
Sbjct: 23 LVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDE-----NPNTAAQYGIRSIPTL 77
Query: 63 F 63
Sbjct: 78 L 78
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 23/79 (29%)
Query: 3 QGEWMVEFFAPWCPA--------------CKQ----MEKVWQEYSGWAQDLNINVAQVDV 44
G +V+F+A WC CK ++++ EY G + VA++++
Sbjct: 21 DGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG-----KLTVAKLNI 75
Query: 45 TVSPGLSGRFMVTALPTIF 63
+PG + ++ + +PT+
Sbjct: 76 DQNPGTAPKYGIRGIPTLL 94
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V+F A WC CK ++ + S + N+ +VDV + ++ ++ + +PT +F+
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLS--EKYSNVIFLEVDVDDAQDVAPKYGIRGIPTLLLFK 81
Query: 65 EG 66
G
Sbjct: 82 NG 83
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The
Electron Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd
(Photoreduced Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 7 MVEFFAPWCPACKQMEK 23
M++ +A WC ACK+ EK
Sbjct: 35 MLDLYADWCVACKEFEK 51
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 7 MVEFFAPWCPACKQMEK 23
M++ +A WC ACK+ EK
Sbjct: 32 MLDLYADWCVACKEFEK 48
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
Length = 105
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+++F+A WC CK + +E S D + +VDV ++ + +PT
Sbjct: 24 VIDFYATWCGPCKMIAPKLEELSQSMSD--VVFLKVDVDECEDIAQDNQIACMPTFL 78
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of
Thioredoxin 1 From Yeast (Trx1)
Length = 103
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V+F+A WC CK + + +++S Q + ++DV ++ + V+A+PT +F+
Sbjct: 22 VVDFYATWCGPCKMIAPMIEKFS--EQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFK 79
Query: 65 EG 66
G
Sbjct: 80 NG 81
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V+F+A WC CK + + +++S Q + ++DV ++ + V+A+PT +F+
Sbjct: 28 VVDFYATWCGPCKMIAPMIEKFS--EQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFK 85
Query: 65 EG 66
G
Sbjct: 86 NG 87
>pdb|4EBA|A Chain A, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|B Chain B, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|C Chain C, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|D Chain D, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|E Chain E, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|F Chain F, Crystal Structure Of The Rna14-Rna15 Complex
Length = 645
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 15 CPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGIRGNIERG 74
C +E +WQ Y+ W QD+N A+ + LS ++M +++Q+ + NI +G
Sbjct: 188 CQPMDCLESMWQRYTQWEQDVNQLTARRHIG---ELSAQYMNAR--SLYQDWL--NITKG 240
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
++ F WC CK+M+ ++E + + +I A +D + + LP+ +F
Sbjct: 21 IIMFTGSWCQPCKKMKPTFEEMASQMEG-DIRFAYMDAEDAEKTMAELNIRTLPSLALFV 79
Query: 65 EGIRGNIERGYFN 77
+G+ + G N
Sbjct: 80 DGMIREVFSGTMN 92
>pdb|4E85|A Chain A, Crystal Structure Of Hat Domain Of Rna14
pdb|4E85|B Chain B, Crystal Structure Of Hat Domain Of Rna14
Length = 678
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 15 CPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGIRGNIERG 74
C +E +WQ Y+ W QD+N A+ + LS ++M +++Q+ + NI +G
Sbjct: 221 CQPMDCLESMWQRYTQWEQDVNQLTARRHIG---ELSAQYMNAR--SLYQDWL--NITKG 273
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
The Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
The Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT 61
+++F A WC C+ M V+ + + + N +VDV ++ +F V A+PT
Sbjct: 38 VIDFTASWCGPCRIMAPVFADLAK--KFPNAVFLKVDVDELKPIAEQFSVEAMPT 90
>pdb|4E6H|A Chain A, Crystal Structure Of The Hat Domain Of K. Lactis Rna14
Length = 679
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 15 CPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGIRGNIERG 74
C +E +WQ Y+ W QD+N A+ + LS ++M +++Q+ + NI +G
Sbjct: 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIG---ELSAQYMNAR--SLYQDWL--NITKG 274
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
Length = 105
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V+F A WC CK ++ + S + N+ +VDV + ++ V A PT F+
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLS--EKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFFK 81
Query: 65 EGIR 68
+G +
Sbjct: 82 KGQK 85
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDL-NINVAQVDVTVSPGLSGRFMVTALPTI--F 63
+V+F+A WC C + V +E A D + +++ S ++ R+ + +LPTI F
Sbjct: 27 VVDFWAEWCAPCLILAPVIEEL---ANDYPQVAFGKLNTEESQDIAMRYGIMSLPTIMFF 83
Query: 64 QEG 66
+ G
Sbjct: 84 KNG 86
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+ F A WC CKQ+ + E S L V +DV S + + A PT F
Sbjct: 50 LANFSARWCGPCKQIAPYYIELSENYPSLMFLV--IDVDELSDFSASWEIKATPTFF 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,433,307
Number of Sequences: 62578
Number of extensions: 218955
Number of successful extensions: 779
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 139
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)