Query psy9732
Match_columns 250
No_of_seqs 292 out of 1934
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 18:09:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0913|consensus 100.0 3E-29 6.5E-34 218.0 5.3 164 1-174 37-207 (248)
2 PTZ00443 Thioredoxin domain-co 99.9 2.1E-23 4.6E-28 183.3 11.9 146 3-163 52-202 (224)
3 cd02994 PDI_a_TMX PDIa family, 99.8 5E-19 1.1E-23 135.2 8.9 81 3-88 16-100 (101)
4 cd03006 PDI_a_EFP1_N PDIa fami 99.8 4.8E-19 1E-23 140.3 8.9 78 3-85 29-109 (113)
5 PF00085 Thioredoxin: Thioredo 99.8 3E-18 6.5E-23 129.6 10.0 83 3-90 17-103 (103)
6 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.8E-18 3.8E-23 132.5 8.1 78 3-85 18-97 (101)
7 cd02963 TRX_DnaJ TRX domain, D 99.8 2E-18 4.4E-23 135.4 8.5 83 3-89 24-110 (111)
8 cd02999 PDI_a_ERp44_like PDIa 99.7 4.5E-18 9.8E-23 131.3 8.2 79 2-87 17-100 (100)
9 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 4.7E-18 1E-22 130.4 8.1 78 3-85 19-100 (104)
10 cd02996 PDI_a_ERp44 PDIa famil 99.7 5.9E-18 1.3E-22 131.2 8.1 80 3-85 18-104 (108)
11 KOG4277|consensus 99.7 1.7E-18 3.6E-23 156.2 5.6 115 3-136 43-164 (468)
12 KOG0910|consensus 99.7 9.6E-18 2.1E-22 138.0 8.6 85 2-91 60-148 (150)
13 cd02954 DIM1 Dim1 family; Dim1 99.7 1.2E-17 2.5E-22 132.6 8.4 78 3-85 14-93 (114)
14 cd02956 ybbN ybbN protein fami 99.7 2.1E-17 4.6E-22 124.9 9.2 80 3-87 12-95 (96)
15 KOG0190|consensus 99.7 1E-17 2.3E-22 160.7 8.7 113 3-132 42-160 (493)
16 KOG0191|consensus 99.7 3.2E-17 6.9E-22 154.0 10.2 129 2-144 46-180 (383)
17 PHA02278 thioredoxin-like prot 99.7 4.1E-17 8.8E-22 127.2 8.9 78 3-85 14-97 (103)
18 cd03005 PDI_a_ERp46 PDIa famil 99.7 4.4E-17 9.5E-22 123.7 8.3 80 2-85 15-98 (102)
19 cd03000 PDI_a_TMX3 PDIa family 99.7 5.9E-17 1.3E-21 124.9 8.5 83 2-89 14-102 (104)
20 cd02993 PDI_a_APS_reductase PD 99.7 8.6E-17 1.9E-21 125.4 8.8 80 3-85 21-105 (109)
21 cd03002 PDI_a_MPD1_like PDI fa 99.7 7.1E-17 1.5E-21 124.4 7.6 83 3-87 18-108 (109)
22 PRK09381 trxA thioredoxin; Pro 99.7 3.5E-16 7.7E-21 121.1 9.9 83 3-90 21-107 (109)
23 cd02948 TRX_NDPK TRX domain, T 99.7 3.4E-16 7.3E-21 120.8 9.4 80 3-88 17-100 (102)
24 cd03065 PDI_b_Calsequestrin_N 99.7 1.6E-16 3.5E-21 127.2 7.3 83 3-90 27-118 (120)
25 cd03001 PDI_a_P5 PDIa family, 99.7 3.4E-16 7.5E-21 119.0 8.5 81 3-87 18-102 (103)
26 cd02985 TRX_CDSP32 TRX family, 99.7 4.7E-16 1E-20 120.3 9.3 73 3-81 15-92 (103)
27 COG3118 Thioredoxin domain-con 99.6 2.8E-16 6.1E-21 141.7 8.0 87 2-93 42-132 (304)
28 TIGR01126 pdi_dom protein disu 99.6 5.5E-16 1.2E-20 117.1 8.2 85 2-90 12-101 (102)
29 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 1.2E-15 2.5E-20 115.9 8.5 80 3-85 18-100 (104)
30 PRK10996 thioredoxin 2; Provis 99.6 2.2E-15 4.8E-20 122.9 10.0 83 3-90 52-138 (139)
31 cd02998 PDI_a_ERp38 PDIa famil 99.6 1.9E-15 4.2E-20 114.7 8.2 79 3-85 18-101 (105)
32 cd02997 PDI_a_PDIR PDIa family 99.6 2.5E-15 5.5E-20 114.2 8.4 79 3-85 17-100 (104)
33 cd02962 TMX2 TMX2 family; comp 99.6 2.2E-15 4.8E-20 125.2 8.6 66 3-68 47-120 (152)
34 KOG0907|consensus 99.6 2E-15 4.4E-20 118.4 7.9 74 3-82 21-96 (106)
35 KOG0190|consensus 99.6 1E-15 2.2E-20 147.0 7.3 86 3-92 384-474 (493)
36 TIGR01068 thioredoxin thioredo 99.6 6E-15 1.3E-19 110.8 9.0 83 3-90 14-100 (101)
37 cd02950 TxlA TRX-like protein 99.6 1.1E-14 2.4E-19 119.4 10.5 84 3-91 20-110 (142)
38 cd02984 TRX_PICOT TRX domain, 99.6 8.6E-15 1.9E-19 110.4 8.8 77 3-85 14-92 (97)
39 cd02957 Phd_like Phosducin (Ph 99.6 4.4E-15 9.6E-20 116.5 7.1 72 3-81 24-97 (113)
40 cd02961 PDI_a_family Protein D 99.6 8E-15 1.7E-19 109.2 8.1 78 4-85 16-97 (101)
41 cd02949 TRX_NTR TRX domain, no 99.6 1.3E-14 2.9E-19 110.5 9.3 78 3-85 13-92 (97)
42 cd02965 HyaE HyaE family; HyaE 99.6 8.7E-15 1.9E-19 115.6 8.3 78 3-85 27-108 (111)
43 cd03007 PDI_a_ERp29_N PDIa fam 99.6 3.8E-15 8.3E-20 118.5 6.4 81 3-90 18-115 (116)
44 cd02989 Phd_like_TxnDC9 Phosdu 99.6 8.3E-15 1.8E-19 115.6 8.2 64 3-68 22-87 (113)
45 PLN00410 U5 snRNP protein, DIM 99.6 1.3E-14 2.7E-19 119.4 9.1 79 3-85 23-112 (142)
46 PTZ00102 disulphide isomerase; 99.6 1E-14 2.3E-19 139.2 9.5 88 3-95 49-142 (477)
47 cd02953 DsbDgamma DsbD gamma f 99.6 8.8E-15 1.9E-19 112.5 6.7 78 3-85 11-99 (104)
48 TIGR02187 GlrX_arch Glutaredox 99.5 2.7E-14 5.9E-19 124.2 10.4 125 2-143 18-150 (215)
49 PLN02309 5'-adenylylsulfate re 99.5 1.8E-14 3.9E-19 138.4 9.1 85 3-89 365-455 (457)
50 cd02986 DLP Dim1 family, Dim1- 99.5 2.6E-14 5.5E-19 113.3 8.4 65 3-68 14-80 (114)
51 TIGR01130 ER_PDI_fam protein d 99.5 2.3E-14 5.1E-19 135.3 9.4 87 3-92 18-110 (462)
52 PTZ00051 thioredoxin; Provisio 99.5 3.1E-14 6.7E-19 107.7 7.9 71 3-79 18-90 (98)
53 TIGR00424 APS_reduc 5'-adenyly 99.5 3.5E-14 7.5E-19 136.5 9.0 85 3-89 371-461 (463)
54 PTZ00102 disulphide isomerase; 99.5 6.5E-14 1.4E-18 133.7 10.5 88 3-93 375-467 (477)
55 cd02992 PDI_a_QSOX PDIa family 99.5 4.7E-14 1E-18 111.3 7.6 62 3-64 19-84 (114)
56 TIGR00411 redox_disulf_1 small 99.5 1.6E-13 3.5E-18 100.3 8.6 77 6-89 2-80 (82)
57 cd02947 TRX_family TRX family; 99.5 2.5E-13 5.5E-18 98.9 9.1 77 3-85 10-88 (93)
58 KOG0191|consensus 99.5 5.4E-14 1.2E-18 132.2 6.8 133 3-142 162-303 (383)
59 KOG0912|consensus 99.5 6.1E-14 1.3E-18 126.7 5.4 87 3-92 13-107 (375)
60 cd02951 SoxW SoxW family; SoxW 99.4 3E-13 6.6E-18 107.3 8.0 77 4-85 15-111 (125)
61 cd02987 Phd_like_Phd Phosducin 99.4 3.4E-13 7.3E-18 114.5 8.3 62 4-68 84-147 (175)
62 cd02975 PfPDO_like_N Pyrococcu 99.4 3.5E-13 7.5E-18 106.3 7.8 83 3-89 22-108 (113)
63 cd02982 PDI_b'_family Protein 99.4 5.5E-13 1.2E-17 101.6 7.3 82 3-89 12-101 (103)
64 PTZ00062 glutaredoxin; Provisi 99.4 4.8E-12 1E-16 110.0 12.9 114 3-146 17-136 (204)
65 KOG0908|consensus 99.4 7.6E-13 1.6E-17 116.8 7.3 82 4-92 22-107 (288)
66 TIGR01130 ER_PDI_fam protein d 99.3 4.4E-12 9.5E-17 119.8 10.5 88 3-94 364-457 (462)
67 cd02973 TRX_GRX_like Thioredox 99.3 4E-12 8.7E-17 90.1 6.7 60 7-68 3-62 (67)
68 TIGR01295 PedC_BrcD bacterioci 99.3 8.1E-12 1.8E-16 100.0 8.8 76 3-85 23-116 (122)
69 PHA02125 thioredoxin-like prot 99.3 7.8E-12 1.7E-16 91.4 7.4 54 7-68 2-55 (75)
70 cd02959 ERp19 Endoplasmic reti 99.3 4.5E-12 9.7E-17 100.7 6.3 81 3-85 19-105 (117)
71 TIGR00412 redox_disulf_2 small 99.3 7.8E-12 1.7E-16 91.9 6.9 68 8-85 3-71 (76)
72 cd02952 TRP14_like Human TRX-r 99.3 8.4E-12 1.8E-16 99.8 6.9 61 3-64 21-96 (119)
73 cd02988 Phd_like_VIAF Phosduci 99.3 8.9E-12 1.9E-16 107.3 7.4 67 4-79 103-171 (192)
74 TIGR02187 GlrX_arch Glutaredox 99.2 5.4E-11 1.2E-15 103.5 7.8 80 3-89 132-214 (215)
75 cd03010 TlpA_like_DsbE TlpA-li 99.2 1.3E-10 2.7E-15 92.1 8.6 76 3-85 25-126 (127)
76 cd02964 TryX_like_family Trypa 99.2 6.3E-11 1.4E-15 95.0 6.8 67 2-68 16-112 (132)
77 cd03008 TryX_like_RdCVF Trypar 99.2 7.5E-11 1.6E-15 97.5 7.4 76 2-82 24-134 (146)
78 PRK14018 trifunctional thiored 99.2 1.1E-10 2.3E-15 114.0 9.6 82 3-88 56-170 (521)
79 cd03009 TryX_like_TryX_NRX Try 99.1 9.8E-11 2.1E-15 93.3 7.2 67 2-68 17-112 (131)
80 KOG1731|consensus 99.1 9.3E-12 2E-16 120.4 1.4 61 4-64 58-122 (606)
81 PF13905 Thioredoxin_8: Thiore 99.1 1.6E-10 3.5E-15 86.8 7.9 64 4-67 2-94 (95)
82 PF13098 Thioredoxin_2: Thiore 99.1 4.5E-11 9.7E-16 92.4 4.9 78 3-85 5-108 (112)
83 cd02966 TlpA_like_family TlpA- 99.1 2.9E-10 6.2E-15 85.7 8.2 66 3-68 19-110 (116)
84 PRK03147 thiol-disulfide oxido 99.1 4.2E-10 9.2E-15 93.3 9.9 83 3-89 61-170 (173)
85 cd03026 AhpF_NTD_C TRX-GRX-lik 99.1 2.4E-10 5.1E-15 86.8 7.5 73 5-85 14-86 (89)
86 TIGR02740 TraF-like TraF-like 99.1 2.4E-10 5.3E-15 103.3 8.3 78 2-85 165-256 (271)
87 TIGR02738 TrbB type-F conjugat 99.1 4.5E-10 9.8E-15 93.5 8.7 77 3-85 50-145 (153)
88 PRK00293 dipZ thiol:disulfide 99.1 3.2E-10 6.9E-15 112.2 8.2 83 3-90 474-569 (571)
89 PRK15412 thiol:disulfide inter 99.0 1.4E-09 3.1E-14 92.5 9.4 75 3-85 68-168 (185)
90 TIGR00385 dsbE periplasmic pro 99.0 1.8E-09 3.9E-14 90.8 9.3 80 3-90 63-170 (173)
91 cd02955 SSP411 TRX domain, SSP 99.0 7.5E-10 1.6E-14 89.1 6.6 65 3-68 15-93 (124)
92 cd03011 TlpA_like_ScsD_MtbDsbE 98.9 3.1E-09 6.7E-14 83.3 7.8 75 3-85 20-118 (123)
93 cd03012 TlpA_like_DipZ_like Tl 98.9 5.4E-09 1.2E-13 83.0 7.7 66 3-68 23-118 (126)
94 PLN02919 haloacid dehalogenase 98.9 4.8E-09 1E-13 110.3 9.5 79 3-85 420-528 (1057)
95 cd02967 mauD Methylamine utili 98.9 2.3E-09 5E-14 82.9 4.0 39 3-42 21-59 (114)
96 PF08534 Redoxin: Redoxin; In 98.8 1E-08 2.2E-13 82.9 7.8 76 2-81 27-136 (146)
97 PRK13728 conjugal transfer pro 98.8 3.7E-08 8E-13 84.2 8.7 78 7-90 73-170 (181)
98 TIGR02196 GlrX_YruB Glutaredox 98.7 6.4E-08 1.4E-12 68.2 6.6 55 7-68 2-60 (74)
99 PTZ00056 glutathione peroxidas 98.7 4.1E-08 8.8E-13 84.9 6.5 43 3-45 39-81 (199)
100 COG0526 TrxA Thiol-disulfide i 98.7 4.8E-08 1E-12 72.2 5.9 65 3-68 32-101 (127)
101 cd02960 AGR Anterior Gradient 98.7 9.3E-08 2E-12 77.7 7.7 72 3-81 23-101 (130)
102 PF13899 Thioredoxin_7: Thiore 98.7 2.3E-08 4.9E-13 74.0 3.8 60 3-64 17-79 (82)
103 PRK11509 hydrogenase-1 operon 98.6 1.1E-07 2.3E-12 77.5 7.3 79 13-95 46-128 (132)
104 cd02958 UAS UAS family; UAS is 98.6 1.3E-07 2.9E-12 74.0 7.5 82 3-89 17-109 (114)
105 cd01659 TRX_superfamily Thiore 98.6 1.3E-07 2.9E-12 62.4 5.8 56 7-64 1-59 (69)
106 cd00340 GSH_Peroxidase Glutath 98.6 2.5E-07 5.4E-12 76.0 7.8 42 3-45 22-63 (152)
107 COG4232 Thiol:disulfide interc 98.5 8.8E-08 1.9E-12 93.7 5.1 83 4-90 475-567 (569)
108 TIGR02661 MauD methylamine deh 98.5 4.5E-07 9.7E-12 77.5 8.8 65 3-68 74-159 (189)
109 TIGR02200 GlrX_actino Glutared 98.5 3.2E-07 7E-12 65.7 6.4 55 7-68 2-62 (77)
110 PF13192 Thioredoxin_3: Thiore 98.5 5.7E-07 1.2E-11 65.8 7.0 68 8-85 3-71 (76)
111 PLN02412 probable glutathione 98.5 4.9E-07 1.1E-11 75.8 7.6 43 3-45 29-71 (167)
112 KOG0914|consensus 98.4 1.2E-07 2.6E-12 82.7 3.2 66 3-68 144-217 (265)
113 TIGR01626 ytfJ_HI0045 conserve 98.4 3.7E-07 8E-12 78.3 6.1 76 2-85 58-172 (184)
114 cd02969 PRX_like1 Peroxiredoxi 98.4 6.5E-07 1.4E-11 74.7 7.1 66 3-68 25-122 (171)
115 PF13728 TraF: F plasmid trans 98.4 8.3E-07 1.8E-11 77.8 8.0 76 3-85 120-210 (215)
116 PLN02399 phospholipid hydroper 98.4 8.2E-07 1.8E-11 78.9 8.0 43 3-45 99-141 (236)
117 smart00594 UAS UAS domain. 98.4 1.1E-06 2.5E-11 69.9 7.8 81 3-85 27-117 (122)
118 TIGR02540 gpx7 putative glutat 98.4 9.4E-07 2E-11 72.5 7.3 42 3-44 22-63 (153)
119 TIGR02180 GRX_euk Glutaredoxin 98.4 6.4E-07 1.4E-11 65.4 5.6 59 7-68 1-64 (84)
120 PF00578 AhpC-TSA: AhpC/TSA fa 98.4 1.1E-06 2.3E-11 68.5 6.5 66 3-68 25-121 (124)
121 cd03017 PRX_BCP Peroxiredoxin 98.3 1.8E-06 3.9E-11 68.9 6.8 79 3-85 23-135 (140)
122 TIGR02739 TraF type-F conjugat 98.2 5.1E-06 1.1E-10 74.7 7.9 76 3-85 150-240 (256)
123 cd02970 PRX_like2 Peroxiredoxi 98.1 9.2E-06 2E-10 65.1 7.8 45 4-48 24-69 (149)
124 PTZ00256 glutathione peroxidas 98.1 1.1E-05 2.3E-10 68.6 8.1 42 4-45 41-83 (183)
125 PRK11200 grxA glutaredoxin 1; 98.1 9.4E-06 2E-10 60.3 5.7 61 6-68 2-68 (85)
126 cd03015 PRX_Typ2cys Peroxiredo 98.0 1.5E-05 3.3E-10 66.7 7.2 43 3-45 29-72 (173)
127 TIGR03137 AhpC peroxiredoxin. 98.0 2.5E-05 5.5E-10 66.6 8.3 66 3-68 31-131 (187)
128 PRK13703 conjugal pilus assemb 98.0 2E-05 4.4E-10 70.5 7.7 75 4-85 144-233 (248)
129 KOG2501|consensus 98.0 6.4E-06 1.4E-10 68.7 3.8 66 3-68 33-128 (157)
130 cd03018 PRX_AhpE_like Peroxire 98.0 2.5E-05 5.5E-10 62.9 7.2 42 4-45 29-71 (149)
131 cd02976 NrdH NrdH-redoxin (Nrd 98.0 2.6E-05 5.5E-10 54.6 6.3 55 7-68 2-60 (73)
132 cd02968 SCO SCO (an acronym fo 98.0 2.1E-05 4.6E-10 62.8 6.5 44 3-46 22-69 (142)
133 PRK09437 bcp thioredoxin-depen 97.9 2.8E-05 6.2E-10 63.5 6.9 43 3-45 30-73 (154)
134 cd02971 PRX_family Peroxiredox 97.9 2.8E-05 6.1E-10 61.8 6.3 43 3-45 22-65 (140)
135 TIGR03143 AhpF_homolog putativ 97.9 3.5E-05 7.5E-10 76.1 8.0 75 3-85 475-550 (555)
136 PF14595 Thioredoxin_9: Thiore 97.8 4.7E-05 1E-09 61.6 6.3 75 4-85 42-122 (129)
137 cd03023 DsbA_Com1_like DsbA fa 97.8 9.1E-05 2E-09 59.3 7.7 30 4-33 6-35 (154)
138 PRK00522 tpx lipid hydroperoxi 97.8 5.1E-05 1.1E-09 63.5 6.4 42 3-46 44-86 (167)
139 PF00462 Glutaredoxin: Glutare 97.8 7E-05 1.5E-09 51.8 6.1 55 7-68 1-59 (60)
140 cd03419 GRX_GRXh_1_2_like Glut 97.8 5.3E-05 1.1E-09 55.0 5.6 57 7-68 2-63 (82)
141 cd03014 PRX_Atyp2cys Peroxired 97.8 9.3E-05 2E-09 59.5 7.2 41 3-45 26-67 (143)
142 PF03190 Thioredox_DsbH: Prote 97.8 2.8E-05 6.1E-10 65.4 4.3 65 3-68 37-115 (163)
143 COG2143 Thioredoxin-related pr 97.7 0.00012 2.5E-09 61.3 7.5 78 3-85 42-141 (182)
144 PRK15317 alkyl hydroperoxide r 97.7 9.7E-05 2.1E-09 72.2 8.1 79 3-89 115-196 (517)
145 PRK10382 alkyl hydroperoxide r 97.6 0.00024 5.2E-09 61.0 8.3 83 3-85 31-148 (187)
146 TIGR02183 GRXA Glutaredoxin, G 97.6 0.0001 2.2E-09 55.1 5.2 60 7-68 2-67 (86)
147 cd02066 GRX_family Glutaredoxi 97.6 0.00012 2.6E-09 50.8 5.2 55 7-68 2-60 (72)
148 PF02114 Phosducin: Phosducin; 97.6 0.00019 4.1E-09 64.9 7.7 61 5-68 148-210 (265)
149 PRK13190 putative peroxiredoxi 97.6 0.00016 3.4E-09 62.6 6.9 78 8-85 33-146 (202)
150 PRK15000 peroxidase; Provision 97.6 0.00025 5.4E-09 61.4 7.8 83 3-85 34-154 (200)
151 KOG1672|consensus 97.6 0.00019 4.2E-09 61.8 6.7 73 3-81 84-158 (211)
152 PRK10877 protein disulfide iso 97.6 0.0002 4.2E-09 63.5 7.0 76 4-90 108-230 (232)
153 KOG3425|consensus 97.6 0.00028 6.2E-09 56.4 6.9 64 4-68 26-106 (128)
154 cd03016 PRX_1cys Peroxiredoxin 97.5 0.00027 5.8E-09 61.1 7.2 40 6-45 29-68 (203)
155 PF06110 DUF953: Eukaryotic pr 97.5 0.00024 5.2E-09 56.9 6.2 61 3-64 19-95 (119)
156 cd03020 DsbA_DsbC_DsbG DsbA fa 97.5 0.00025 5.5E-09 60.6 6.5 70 4-85 78-193 (197)
157 PF13462 Thioredoxin_4: Thiore 97.4 0.00089 1.9E-08 54.3 8.8 41 4-44 13-54 (162)
158 PRK10606 btuE putative glutath 97.4 0.00025 5.3E-09 60.8 5.2 42 3-45 25-66 (183)
159 TIGR03140 AhpF alkyl hydropero 97.4 0.0005 1.1E-08 67.2 7.5 79 3-89 116-197 (515)
160 TIGR02190 GlrX-dom Glutaredoxi 97.3 0.00047 1E-08 50.5 5.4 59 3-68 6-67 (79)
161 cd03418 GRX_GRXb_1_3_like Glut 97.3 0.00065 1.4E-08 48.5 5.7 55 7-68 2-61 (75)
162 PRK13599 putative peroxiredoxi 97.3 0.0008 1.7E-08 58.9 7.0 41 6-46 32-72 (215)
163 TIGR02181 GRX_bact Glutaredoxi 97.3 0.00047 1E-08 50.1 4.6 55 7-68 1-59 (79)
164 cd02991 UAS_ETEA UAS family, E 97.2 0.001 2.2E-08 52.8 6.8 79 3-85 17-105 (116)
165 PHA03050 glutaredoxin; Provisi 97.2 0.00066 1.4E-08 53.3 5.5 60 5-68 13-79 (108)
166 KOG0911|consensus 97.2 0.0001 2.2E-09 64.7 0.9 77 3-85 17-95 (227)
167 TIGR02194 GlrX_NrdH Glutaredox 97.2 0.00089 1.9E-08 48.0 5.7 53 8-67 2-57 (72)
168 cd02972 DsbA_family DsbA famil 97.2 0.00097 2.1E-08 48.5 6.0 59 7-66 1-91 (98)
169 PTZ00137 2-Cys peroxiredoxin; 97.2 0.0015 3.2E-08 59.1 8.3 82 4-85 99-217 (261)
170 PRK13189 peroxiredoxin; Provis 97.2 0.0009 2E-08 58.8 6.8 40 6-45 39-78 (222)
171 cd03027 GRX_DEP Glutaredoxin ( 97.2 0.00096 2.1E-08 47.9 5.8 55 7-68 3-61 (73)
172 PRK10954 periplasmic protein d 97.2 0.00067 1.5E-08 58.6 5.8 39 3-42 37-78 (207)
173 PF14851 FAM176: FAM176 family 97.2 0.00083 1.8E-08 56.0 5.8 25 141-166 23-47 (153)
174 TIGR02189 GlrX-like_plant Glut 97.1 0.0011 2.4E-08 51.0 5.6 56 6-68 9-71 (99)
175 cd03019 DsbA_DsbA DsbA family, 97.1 0.0014 3.1E-08 54.0 6.3 37 3-40 15-51 (178)
176 PRK13191 putative peroxiredoxi 97.0 0.0021 4.6E-08 56.2 7.2 39 7-45 38-76 (215)
177 cd03029 GRX_hybridPRX5 Glutare 97.0 0.0025 5.4E-08 45.5 6.0 55 7-68 3-60 (72)
178 PF13848 Thioredoxin_6: Thiore 96.9 0.0056 1.2E-07 50.5 8.3 78 6-88 98-183 (184)
179 PRK10329 glutaredoxin-like pro 96.9 0.0048 1E-07 45.7 6.9 54 7-67 3-59 (81)
180 PRK11657 dsbG disulfide isomer 96.8 0.0026 5.6E-08 57.0 6.3 74 4-85 118-244 (251)
181 PF05768 DUF836: Glutaredoxin- 96.7 0.0054 1.2E-07 45.2 6.4 57 6-66 1-57 (81)
182 PTZ00253 tryparedoxin peroxida 96.7 0.0039 8.5E-08 53.5 6.5 43 3-45 36-79 (199)
183 TIGR00365 monothiol glutaredox 96.7 0.0035 7.6E-08 48.0 5.5 59 3-68 11-77 (97)
184 cd03028 GRX_PICOT_like Glutare 96.7 0.0033 7.3E-08 47.3 5.1 59 3-68 7-73 (90)
185 COG0695 GrxC Glutaredoxin and 96.5 0.0061 1.3E-07 45.1 5.1 55 7-68 3-63 (80)
186 cd02983 P5_C P5 family, C-term 96.5 0.013 2.9E-07 47.3 7.3 75 19-95 40-119 (130)
187 PRK10638 glutaredoxin 3; Provi 96.4 0.0086 1.9E-07 44.0 5.6 55 7-68 4-62 (83)
188 TIGR03143 AhpF_homolog putativ 96.4 0.025 5.5E-07 56.0 10.6 83 3-90 365-453 (555)
189 PF01216 Calsequestrin: Calseq 96.1 0.02 4.4E-07 53.6 7.2 84 5-94 53-147 (383)
190 PRK10824 glutaredoxin-4; Provi 96.0 0.011 2.3E-07 47.2 4.5 59 3-68 14-80 (115)
191 cd03073 PDI_b'_ERp72_ERp57 PDI 95.9 0.026 5.6E-07 44.4 6.4 71 14-89 29-109 (111)
192 KOG2603|consensus 95.8 0.051 1.1E-06 50.2 8.7 89 6-95 63-170 (331)
193 KOG3414|consensus 95.6 0.056 1.2E-06 43.8 7.2 65 3-68 23-89 (142)
194 cd03072 PDI_b'_ERp44 PDIb' fam 95.5 0.062 1.3E-06 42.1 7.0 80 5-91 18-108 (111)
195 cd02981 PDI_b_family Protein D 95.4 0.067 1.4E-06 39.8 6.6 76 3-89 17-96 (97)
196 KOG1752|consensus 95.3 0.057 1.2E-06 42.2 6.2 57 7-68 16-77 (104)
197 PRK12759 bifunctional gluaredo 95.2 0.05 1.1E-06 52.1 6.6 55 7-68 4-70 (410)
198 PF11009 DUF2847: Protein of u 94.9 0.18 3.8E-06 39.6 7.8 65 3-68 19-90 (105)
199 PTZ00062 glutaredoxin; Provisi 94.4 0.086 1.9E-06 46.0 5.4 59 3-68 112-178 (204)
200 PF02966 DIM1: Mitosis protein 94.3 0.52 1.1E-05 38.4 9.3 64 3-68 20-86 (133)
201 PF14851 FAM176: FAM176 family 93.9 0.079 1.7E-06 44.3 4.1 18 147-164 25-42 (153)
202 PF07449 HyaE: Hydrogenase-1 e 93.7 0.087 1.9E-06 41.4 3.8 73 6-83 28-105 (107)
203 PF07912 ERp29_N: ERp29, N-ter 93.4 0.29 6.4E-06 39.5 6.4 88 4-95 22-123 (126)
204 PF13848 Thioredoxin_6: Thiore 93.1 0.33 7.3E-06 39.8 6.7 63 20-92 7-76 (184)
205 COG3019 Predicted metal-bindin 92.5 0.68 1.5E-05 38.2 7.4 71 6-90 27-103 (149)
206 KOG2640|consensus 92.1 0.033 7.2E-07 51.3 -0.7 82 5-92 78-163 (319)
207 cd03013 PRX5_like Peroxiredoxi 92.0 0.15 3.3E-06 42.0 3.2 54 3-56 29-88 (155)
208 cd02978 KaiB_like KaiB-like fa 91.6 0.71 1.5E-05 33.8 5.9 57 8-64 5-61 (72)
209 cd03031 GRX_GRX_like Glutaredo 91.4 0.47 1E-05 39.3 5.4 55 7-68 2-70 (147)
210 COG1651 DsbG Protein-disulfide 90.6 1.3 2.9E-05 38.6 7.9 30 49-85 206-235 (244)
211 PF15050 SCIMP: SCIMP protein 90.3 0.26 5.6E-06 39.5 2.7 26 141-166 10-35 (133)
212 cd03006 PDI_a_EFP1_N PDIa fami 90.3 0.5 1.1E-05 37.1 4.5 34 108-143 10-46 (113)
213 cd03060 GST_N_Omega_like GST_N 89.7 1.2 2.5E-05 31.2 5.6 56 8-68 2-59 (71)
214 cd03067 PDI_b_PDIR_N PDIb fami 88.7 1.3 2.8E-05 34.8 5.5 79 5-89 21-110 (112)
215 cd00570 GST_N_family Glutathio 88.0 1.9 4.2E-05 28.5 5.6 56 8-68 2-59 (71)
216 cd02996 PDI_a_ERp44 PDIa famil 87.2 0.93 2E-05 34.4 4.0 31 111-143 5-35 (108)
217 PF07689 KaiB: KaiB domain; I 87.1 0.81 1.8E-05 34.3 3.4 55 10-64 3-57 (82)
218 TIGR02654 circ_KaiB circadian 86.1 3.2 7E-05 31.4 6.2 72 6-81 5-77 (87)
219 cd03003 PDI_a_ERdj5_N PDIa fam 85.9 1.2 2.5E-05 33.3 3.8 30 111-142 5-34 (101)
220 PRK09301 circadian clock prote 85.6 3.2 6.9E-05 32.5 6.1 73 6-82 8-81 (103)
221 PF06679 DUF1180: Protein of u 85.0 0.88 1.9E-05 38.4 3.0 13 182-194 128-140 (163)
222 cd03051 GST_N_GTT2_like GST_N 84.9 2.6 5.6E-05 29.0 5.1 56 8-68 2-62 (74)
223 PF14283 DUF4366: Domain of un 84.7 1.1 2.4E-05 39.6 3.6 14 77-90 102-117 (218)
224 cd03007 PDI_a_ERp29_N PDIa fam 84.2 0.9 1.9E-05 36.2 2.6 31 110-142 4-39 (116)
225 cd02994 PDI_a_TMX PDIa family, 83.4 1.7 3.7E-05 32.3 3.8 30 110-143 4-33 (101)
226 PF04277 OAD_gamma: Oxaloaceta 83.0 3.1 6.6E-05 30.2 4.9 27 140-166 7-33 (79)
227 PHA02278 thioredoxin-like prot 82.2 2.1 4.5E-05 33.0 3.9 27 116-144 6-32 (103)
228 cd02948 TRX_NDPK TRX domain, T 82.1 2.3 4.9E-05 32.1 4.1 29 114-144 7-35 (102)
229 cd03037 GST_N_GRX2 GST_N famil 82.1 3.1 6.8E-05 28.9 4.5 56 8-68 2-58 (71)
230 cd03002 PDI_a_MPD1_like PDI fa 81.8 1.5 3.2E-05 32.9 2.9 31 111-143 4-35 (109)
231 PRK15317 alkyl hydroperoxide r 81.6 14 0.0003 36.2 10.3 73 2-90 17-93 (517)
232 cd02977 ArsC_family Arsenate R 81.2 2.1 4.5E-05 32.7 3.6 35 7-48 1-35 (105)
233 KOG3170|consensus 80.7 3.8 8.3E-05 36.0 5.3 61 3-68 110-173 (240)
234 PF07423 DUF1510: Protein of u 80.6 2.9 6.3E-05 36.9 4.7 19 148-166 18-36 (217)
235 KOG3171|consensus 80.3 4.3 9.3E-05 36.0 5.6 61 5-68 161-223 (273)
236 COG1225 Bcp Peroxiredoxin [Pos 80.1 2.4 5.2E-05 35.6 3.8 55 3-57 30-88 (157)
237 COG1331 Highly conserved prote 78.8 1.9 4.2E-05 43.8 3.4 66 2-68 42-121 (667)
238 PF06305 DUF1049: Protein of u 78.4 0.98 2.1E-05 31.8 0.9 37 127-163 7-43 (68)
239 cd03004 PDI_a_ERdj5_C PDIa fam 78.3 3.3 7.2E-05 30.8 3.9 30 112-143 6-36 (104)
240 PF08374 Protocadherin: Protoc 78.2 1.9 4.1E-05 37.9 2.7 15 149-163 47-61 (221)
241 COG4545 Glutaredoxin-related p 77.0 3.4 7.3E-05 30.7 3.3 54 8-68 5-75 (85)
242 cd02997 PDI_a_PDIR PDIa family 76.6 3.5 7.7E-05 30.3 3.5 30 113-144 6-35 (104)
243 TIGR02978 phageshock_pspC phag 76.1 2.2 4.7E-05 34.3 2.3 45 128-172 20-64 (121)
244 PF00085 Thioredoxin: Thioredo 75.4 3.2 6.9E-05 30.3 3.0 30 112-143 4-34 (103)
245 PF01102 Glycophorin_A: Glycop 75.2 1.2 2.7E-05 35.8 0.8 22 145-166 66-87 (122)
246 PF14812 PBP1_TM: Transmembran 74.5 0.99 2.1E-05 33.8 0.0 13 205-217 47-59 (81)
247 PHA03075 glutaredoxin-like pro 74.3 4.4 9.5E-05 32.5 3.6 30 4-33 2-31 (123)
248 KOG4277|consensus 74.2 1.8 3.9E-05 40.3 1.6 19 122-142 41-59 (468)
249 TIGR01617 arsC_related transcr 74.1 6 0.00013 30.9 4.4 34 8-48 2-35 (117)
250 PRK09381 trxA thioredoxin; Pro 74.0 4.6 9.9E-05 30.4 3.6 31 112-144 8-39 (109)
251 KOG0910|consensus 73.9 3.2 7E-05 34.6 2.9 29 113-143 50-78 (150)
252 COG4575 ElaB Uncharacterized c 73.8 3.2 7E-05 32.4 2.7 20 135-154 82-101 (104)
253 cd03045 GST_N_Delta_Epsilon GS 73.6 11 0.00024 26.0 5.3 54 8-66 2-59 (74)
254 cd03036 ArsC_like Arsenate Red 73.0 6.5 0.00014 30.5 4.3 34 8-48 2-35 (111)
255 cd03059 GST_N_SspA GST_N famil 73.0 3 6.5E-05 28.9 2.2 55 7-66 1-56 (73)
256 cd02995 PDI_a_PDI_a'_C PDIa fa 72.3 5.4 0.00012 29.2 3.6 30 111-142 4-34 (104)
257 PRK01655 spxA transcriptional 72.2 7.4 0.00016 31.2 4.6 35 7-48 2-36 (131)
258 cd02993 PDI_a_APS_reductase PD 72.0 4.1 8.9E-05 31.0 2.9 30 112-143 6-38 (109)
259 cd03005 PDI_a_ERp46 PDIa famil 71.4 4.3 9.4E-05 29.8 2.9 29 112-143 5-33 (102)
260 PF12606 RELT: Tumour necrosis 71.3 6.8 0.00015 26.6 3.5 9 153-161 12-20 (50)
261 cd02953 DsbDgamma DsbD gamma f 71.3 5.5 0.00012 29.7 3.5 26 117-144 4-29 (104)
262 cd03040 GST_N_mPGES2 GST_N fam 70.6 7.8 0.00017 27.2 4.0 52 7-64 2-53 (77)
263 cd02985 TRX_CDSP32 TRX family, 70.5 6.8 0.00015 29.5 3.9 25 117-143 6-32 (103)
264 cd02992 PDI_a_QSOX PDIa family 69.7 7.2 0.00016 30.2 3.9 32 111-144 5-37 (114)
265 COG3634 AhpF Alkyl hydroperoxi 69.5 5.2 0.00011 38.3 3.5 71 7-85 120-190 (520)
266 cd02974 AhpF_NTD_N Alkyl hydro 68.6 44 0.00094 25.4 7.9 66 3-85 18-86 (94)
267 cd03035 ArsC_Yffb Arsenate Red 68.5 5.5 0.00012 30.8 3.0 35 7-48 1-35 (105)
268 cd03055 GST_N_Omega GST_N fami 67.6 19 0.00042 26.3 5.8 57 7-68 19-77 (89)
269 cd03001 PDI_a_P5 PDIa family, 66.1 7.3 0.00016 28.5 3.2 29 112-142 5-34 (103)
270 KOG1832|consensus 66.0 3 6.5E-05 43.9 1.3 8 61-68 1243-1251(1516)
271 PF06953 ArsD: Arsenical resis 65.9 15 0.00033 29.5 5.1 59 25-88 29-99 (123)
272 PF03153 TFIIA: Transcription 65.3 3 6.4E-05 39.2 1.1 30 218-247 339-375 (375)
273 TIGR00424 APS_reduc 5'-adenyly 64.4 9.2 0.0002 37.5 4.3 33 108-142 352-387 (463)
274 PRK12559 transcriptional regul 64.0 15 0.00033 29.5 4.9 35 7-48 2-36 (131)
275 TIGR03140 AhpF alkyl hydropero 63.9 67 0.0014 31.4 10.3 72 3-89 18-93 (515)
276 PF13743 Thioredoxin_5: Thiore 63.8 16 0.00034 30.7 5.2 34 9-43 2-35 (176)
277 cd03032 ArsC_Spx Arsenate Redu 63.4 18 0.00039 28.0 5.1 35 7-48 2-36 (115)
278 PF13417 GST_N_3: Glutathione 62.7 48 0.0011 23.1 6.9 54 10-68 2-56 (75)
279 cd02959 ERp19 Endoplasmic reti 62.6 8.6 0.00019 30.1 3.1 26 117-144 12-37 (117)
280 cd02962 TMX2 TMX2 family; comp 61.8 16 0.00034 30.3 4.6 31 110-142 31-63 (152)
281 PTZ00443 Thioredoxin domain-co 61.7 12 0.00026 33.1 4.1 35 107-143 30-69 (224)
282 cd02956 ybbN ybbN protein fami 61.0 11 0.00024 27.4 3.4 19 124-144 12-30 (96)
283 cd03041 GST_N_2GST_N GST_N fam 60.8 14 0.0003 26.2 3.7 50 8-64 3-56 (77)
284 PF09673 TrbC_Ftype: Type-F co 60.2 7.7 0.00017 30.5 2.4 25 42-66 55-80 (113)
285 cd02999 PDI_a_ERp44_like PDIa 60.1 9 0.00019 28.9 2.7 19 123-143 17-35 (100)
286 cd02957 Phd_like Phosducin (Ph 59.8 14 0.00031 28.2 3.9 28 113-142 10-40 (113)
287 PF01323 DSBA: DSBA-like thior 59.7 27 0.00058 28.7 5.8 38 6-43 1-38 (193)
288 PF02439 Adeno_E3_CR2: Adenovi 58.9 9.5 0.00021 24.5 2.2 13 148-160 8-20 (38)
289 PTZ00051 thioredoxin; Provisio 58.8 18 0.00039 26.3 4.2 29 114-144 8-36 (98)
290 cd02998 PDI_a_ERp38 PDIa famil 58.8 8.7 0.00019 28.0 2.4 27 114-142 7-34 (105)
291 cd02963 TRX_DnaJ TRX domain, D 58.7 12 0.00027 28.6 3.3 30 113-144 10-42 (111)
292 PRK10996 thioredoxin 2; Provis 58.5 16 0.00034 29.3 4.1 32 110-143 38-69 (139)
293 TIGR01126 pdi_dom protein disu 58.2 9.7 0.00021 27.6 2.6 27 115-143 4-30 (102)
294 KOG3540|consensus 57.9 6.1 0.00013 38.8 1.7 9 155-163 171-179 (615)
295 cd02950 TxlA TRX-like protein 57.7 14 0.00029 29.9 3.6 25 117-143 13-37 (142)
296 COG5336 Uncharacterized protei 57.7 13 0.00029 29.4 3.3 45 110-159 46-92 (116)
297 PF13807 GNVR: G-rich domain o 56.7 18 0.00038 26.4 3.7 23 139-161 57-79 (82)
298 cd02984 TRX_PICOT TRX domain, 56.6 18 0.00039 26.2 3.8 26 116-143 4-31 (97)
299 cd02961 PDI_a_family Protein D 56.2 18 0.00039 25.6 3.7 30 114-145 5-34 (101)
300 PRK10697 DNA-binding transcrip 56.0 8.1 0.00018 30.9 1.9 44 128-171 25-68 (118)
301 PF07172 GRP: Glycine rich pro 55.7 14 0.0003 28.4 3.1 17 147-163 6-22 (95)
302 cd03056 GST_N_4 GST_N family, 55.6 37 0.00081 23.0 5.2 56 8-68 2-61 (73)
303 COG2761 FrnE Predicted dithiol 55.5 13 0.00028 33.0 3.3 40 49-94 175-216 (225)
304 KOG1731|consensus 55.3 3.5 7.5E-05 41.2 -0.4 60 103-165 35-101 (606)
305 TIGR01195 oadG_fam sodium pump 54.9 39 0.00084 25.1 5.3 29 141-169 11-39 (82)
306 cd03024 DsbA_FrnE DsbA family, 54.9 9.3 0.0002 31.9 2.2 31 49-85 166-196 (201)
307 cd03000 PDI_a_TMX3 PDIa family 54.8 13 0.00027 27.8 2.7 26 116-144 8-33 (104)
308 PRK11677 hypothetical protein; 54.6 14 0.0003 30.2 3.1 20 141-160 3-22 (134)
309 cd02951 SoxW SoxW family; SoxW 54.1 21 0.00046 27.5 4.0 25 119-145 8-33 (125)
310 PRK13344 spxA transcriptional 53.5 31 0.00066 27.8 5.0 35 7-48 2-36 (132)
311 COG3531 Predicted protein-disu 51.7 10 0.00023 33.1 2.0 34 48-85 164-201 (212)
312 PF11446 DUF2897: Protein of u 51.1 25 0.00054 24.3 3.5 12 148-159 11-22 (55)
313 KOG2652|consensus 49.8 18 0.00039 34.0 3.4 15 233-247 334-348 (348)
314 PF06053 DUF929: Domain of unk 49.5 35 0.00075 30.8 5.1 54 3-64 58-111 (249)
315 PF07423 DUF1510: Protein of u 48.9 30 0.00064 30.6 4.5 14 217-230 132-145 (217)
316 cd03022 DsbA_HCCA_Iso DsbA fam 48.6 12 0.00027 30.8 2.0 30 49-85 158-187 (192)
317 PTZ00151 translationally contr 48.4 10 0.00023 32.3 1.5 30 201-230 59-88 (172)
318 cd02989 Phd_like_TxnDC9 Phosdu 48.2 39 0.00084 26.0 4.6 26 115-142 13-38 (113)
319 PLN02309 5'-adenylylsulfate re 48.0 24 0.00053 34.5 4.2 33 108-142 346-381 (457)
320 KOG2507|consensus 47.0 69 0.0015 31.3 6.9 79 3-85 18-103 (506)
321 PF01323 DSBA: DSBA-like thior 46.8 14 0.0003 30.4 2.0 32 48-85 157-188 (193)
322 PF06783 UPF0239: Uncharacteri 46.6 49 0.0011 25.0 4.6 19 150-168 24-44 (85)
323 PRK10884 SH3 domain-containing 46.6 20 0.00043 31.3 3.0 21 141-161 174-194 (206)
324 COG1983 PspC Putative stress-r 46.1 23 0.00049 25.8 2.7 45 127-171 20-65 (70)
325 PF11446 DUF2897: Protein of u 45.8 21 0.00046 24.7 2.5 17 150-166 9-25 (55)
326 cd02954 DIM1 Dim1 family; Dim1 45.7 33 0.00071 27.1 3.9 24 117-142 5-30 (114)
327 COG3105 Uncharacterized protei 44.7 26 0.00057 28.6 3.2 21 141-161 8-28 (138)
328 cd02967 mauD Methylamine utili 44.2 39 0.00084 25.2 4.0 40 24-68 66-108 (114)
329 PF02480 Herpes_gE: Alphaherpe 43.8 7.7 0.00017 37.7 0.0 7 58-64 267-273 (439)
330 PF04024 PspC: PspC domain; I 43.4 22 0.00048 24.9 2.3 40 128-169 20-59 (61)
331 cd03052 GST_N_GDAP1 GST_N fami 43.2 72 0.0016 22.4 5.1 56 8-68 2-61 (73)
332 TIGR02742 TrbC_Ftype type-F co 42.9 43 0.00092 27.2 4.2 19 46-64 59-77 (130)
333 PRK03814 oxaloacetate decarbox 40.8 88 0.0019 23.5 5.4 30 140-169 14-43 (85)
334 KOG4032|consensus 40.8 11 0.00024 32.4 0.5 6 58-63 23-28 (184)
335 cd02975 PfPDO_like_N Pyrococcu 40.5 37 0.0008 26.1 3.4 21 122-144 20-40 (113)
336 COG0278 Glutaredoxin-related p 40.5 28 0.00061 27.2 2.7 51 12-68 27-81 (105)
337 PHA02844 putative transmembran 40.5 41 0.0009 24.7 3.4 24 109-132 12-35 (75)
338 COG3118 Thioredoxin domain-con 39.9 44 0.00096 31.0 4.3 32 109-142 25-59 (304)
339 cd03069 PDI_b_ERp57 PDIb famil 39.7 1.3E+02 0.0029 22.6 6.4 78 3-90 18-103 (104)
340 TIGR01295 PedC_BrcD bacterioci 38.8 45 0.00097 26.2 3.7 26 116-143 15-40 (122)
341 PF00974 Rhabdo_glycop: Rhabdo 38.6 9.5 0.00021 37.7 -0.3 11 133-143 447-457 (501)
342 cd02952 TRP14_like Human TRX-r 38.3 42 0.00091 26.6 3.5 19 124-144 21-46 (119)
343 COG5058 LAG1 Protein transport 38.2 38 0.00082 31.9 3.6 16 135-150 333-348 (395)
344 PRK10132 hypothetical protein; 37.5 32 0.00069 27.0 2.6 20 135-158 85-104 (108)
345 KOG1832|consensus 36.8 18 0.00038 38.5 1.3 8 13-20 1214-1221(1516)
346 PF10577 UPF0560: Uncharacteri 36.0 48 0.001 34.6 4.3 26 141-166 272-297 (807)
347 PF15179 Myc_target_1: Myc tar 35.7 55 0.0012 28.3 3.9 24 147-170 28-51 (197)
348 PHA02975 hypothetical protein; 35.4 63 0.0014 23.4 3.6 23 109-131 12-34 (69)
349 cd03025 DsbA_FrnE_like DsbA fa 35.2 48 0.001 27.2 3.6 27 7-33 3-29 (193)
350 PRK11246 hypothetical protein; 35.1 67 0.0015 28.4 4.5 16 148-163 169-184 (218)
351 PF02630 SCO1-SenC: SCO1/SenC; 34.9 91 0.002 25.9 5.2 45 3-47 52-99 (174)
352 PHA03281 envelope glycoprotein 34.9 30 0.00066 34.6 2.5 24 65-91 497-522 (642)
353 cd02955 SSP411 TRX domain, SSP 34.8 38 0.00083 26.9 2.7 28 117-146 8-35 (124)
354 PRK00523 hypothetical protein; 34.6 52 0.0011 24.1 3.1 14 146-159 13-26 (72)
355 PF13743 Thioredoxin_5: Thiore 34.5 16 0.00034 30.7 0.5 16 49-64 138-153 (176)
356 TIGR03017 EpsF chain length de 33.9 50 0.0011 31.4 3.9 31 136-166 392-422 (444)
357 PRK10404 hypothetical protein; 33.0 42 0.0009 26.0 2.6 20 135-158 79-98 (101)
358 cd03065 PDI_b_Calsequestrin_N 32.9 56 0.0012 25.9 3.4 33 109-142 11-45 (120)
359 PF07511 DUF1525: Protein of u 31.8 31 0.00067 27.4 1.7 27 51-83 76-102 (114)
360 KOG1422|consensus 31.6 2.1E+02 0.0046 25.3 7.0 67 14-95 20-89 (221)
361 KOG2153|consensus 31.3 22 0.00049 36.2 1.0 29 178-206 141-170 (704)
362 PF00558 Vpu: Vpu protein; In 31.3 74 0.0016 23.8 3.5 13 195-207 50-62 (81)
363 KOG0772|consensus 31.2 37 0.00081 33.9 2.5 10 215-224 170-179 (641)
364 cd02960 AGR Anterior Gradient 31.0 56 0.0012 26.4 3.1 26 119-146 18-43 (130)
365 cd03033 ArsC_15kD Arsenate Red 30.8 68 0.0015 25.0 3.5 35 7-48 2-36 (113)
366 cd03030 GRX_SH3BGR Glutaredoxi 30.8 93 0.002 23.4 4.2 61 8-68 2-70 (92)
367 PF14654 Epiglycanin_C: Mucin, 30.8 79 0.0017 24.6 3.7 24 135-159 16-41 (106)
368 PF06295 DUF1043: Protein of u 30.6 47 0.001 26.6 2.6 16 145-160 3-18 (128)
369 cd03049 GST_N_3 GST_N family, 30.4 95 0.0021 21.2 4.0 58 8-68 2-61 (73)
370 PF15176 LRR19-TM: Leucine-ric 29.8 90 0.002 24.3 3.9 27 142-168 18-44 (102)
371 PF06422 PDR_CDR: CDR ABC tran 29.8 80 0.0017 24.3 3.7 6 137-142 49-54 (103)
372 PF03286 Pox_Ag35: Pox virus A 29.6 43 0.00094 29.2 2.4 8 78-85 13-20 (200)
373 PF04871 Uso1_p115_C: Uso1 / p 29.2 22 0.00047 29.0 0.4 8 157-164 89-96 (136)
374 KOG3241|consensus 28.6 37 0.0008 29.3 1.7 22 187-208 202-223 (227)
375 PF05957 DUF883: Bacterial pro 28.5 52 0.0011 24.6 2.4 20 135-158 72-91 (94)
376 cd03068 PDI_b_ERp72 PDIb famil 28.3 2.7E+02 0.0058 21.2 7.0 79 4-90 20-107 (107)
377 TIGR03757 conj_TIGR03757 integ 28.1 42 0.00092 26.7 1.9 27 51-83 77-103 (113)
378 cd03053 GST_N_Phi GST_N family 28.1 53 0.0011 22.6 2.3 56 7-67 2-61 (76)
379 PLN00410 U5 snRNP protein, DIM 28.1 88 0.0019 25.7 3.9 24 117-142 14-39 (142)
380 PF14991 MLANA: Protein melan- 28.1 10 0.00022 30.2 -1.6 19 151-171 33-51 (118)
381 PF13965 SID-1_RNA_chan: dsRNA 27.8 56 0.0012 32.9 3.2 29 36-64 14-42 (570)
382 cd03066 PDI_b_Calsequestrin_mi 27.7 2.6E+02 0.0056 20.8 6.5 77 3-90 19-100 (102)
383 PRK11752 putative S-transferas 27.2 1.4E+02 0.003 26.5 5.3 63 4-66 41-109 (264)
384 PF03137 OATP: Organic Anion T 26.9 21 0.00046 35.4 0.0 23 213-242 291-313 (539)
385 COG3763 Uncharacterized protei 26.7 91 0.002 22.7 3.2 22 137-159 4-25 (71)
386 COG3115 ZipA Cell division pro 26.6 95 0.0021 28.9 4.1 16 200-215 55-70 (324)
387 PF06706 CTV_P6: Citrus triste 26.3 50 0.0011 21.9 1.7 33 139-171 7-39 (51)
388 KOG2422|consensus 26.3 37 0.00081 34.3 1.6 16 171-186 89-104 (665)
389 TIGR00014 arsC arsenate reduct 26.1 1.3E+02 0.0027 23.4 4.3 34 8-48 2-35 (114)
390 PHA03281 envelope glycoprotein 26.1 94 0.002 31.3 4.2 11 197-207 609-619 (642)
391 PRK13730 conjugal transfer pil 25.7 38 0.00082 29.8 1.3 39 47-89 151-192 (212)
392 PRK01844 hypothetical protein; 25.6 1E+02 0.0022 22.6 3.3 17 143-159 9-25 (72)
393 PF13314 DUF4083: Domain of un 25.5 94 0.002 21.8 3.0 17 150-166 15-31 (58)
394 PF09822 ABC_transp_aux: ABC-t 25.4 2.2E+02 0.0047 25.1 6.3 58 2-60 23-90 (271)
395 KOG3593|consensus 25.3 45 0.00098 31.0 1.8 9 39-47 61-69 (355)
396 PF14575 EphA2_TM: Ephrin type 24.8 1.1E+02 0.0025 22.2 3.6 10 150-159 8-17 (75)
397 KOG2466|consensus 24.2 96 0.0021 31.0 3.9 13 160-172 510-522 (572)
398 PF04134 DUF393: Protein of un 24.1 1E+02 0.0022 23.3 3.4 45 10-57 2-46 (114)
399 KOG4075|consensus 24.0 75 0.0016 26.9 2.8 43 135-180 97-139 (167)
400 PF03672 UPF0154: Uncharacteri 24.0 74 0.0016 22.7 2.3 15 145-159 4-18 (64)
401 COG1999 Uncharacterized protei 24.0 1.8E+02 0.0039 25.1 5.3 54 3-56 67-127 (207)
402 PF12072 DUF3552: Domain of un 23.7 82 0.0018 27.1 3.1 19 141-159 3-21 (201)
403 KOG0843|consensus 23.6 28 0.00061 30.0 0.1 41 162-203 146-186 (197)
404 TIGR03007 pepcterm_ChnLen poly 23.3 97 0.0021 30.0 3.8 30 136-165 409-438 (498)
405 cd02987 Phd_like_Phd Phosducin 23.1 1.2E+02 0.0027 25.3 4.0 15 126-142 85-99 (175)
406 PF15345 TMEM51: Transmembrane 23.0 28 0.0006 31.1 -0.0 14 148-161 65-78 (233)
407 TIGR01006 polys_exp_MPA1 polys 23.0 1.2E+02 0.0025 26.2 3.9 28 138-165 172-199 (226)
408 PF05293 ASFV_L11L: African sw 22.9 1.6E+02 0.0035 21.1 3.8 21 150-170 32-52 (78)
409 KOG0911|consensus 22.9 88 0.0019 27.9 3.1 50 12-68 151-204 (227)
410 KOG0908|consensus 22.9 1.2E+02 0.0025 27.8 3.9 29 112-142 8-37 (288)
411 PRK14766 lipoprotein signal pe 22.8 78 0.0017 27.6 2.7 36 125-161 136-177 (201)
412 PF03376 Adeno_E3B: Adenovirus 22.7 1.6E+02 0.0034 21.2 3.8 35 134-168 9-46 (67)
413 PF15048 OSTbeta: Organic solu 22.7 1.5E+02 0.0033 23.9 4.2 22 135-159 33-54 (125)
414 cd03034 ArsC_ArsC Arsenate Red 22.6 95 0.0021 23.9 3.0 34 8-48 2-35 (112)
415 PF06809 NPDC1: Neural prolife 22.6 59 0.0013 30.4 2.0 8 12-19 60-67 (341)
416 PF12575 DUF3753: Protein of u 22.6 1E+02 0.0022 22.6 2.8 24 109-132 12-35 (72)
417 PF12438 DUF3679: Protein of u 22.2 84 0.0018 21.9 2.2 19 141-159 2-20 (56)
418 PF11021 DUF2613: Protein of u 21.4 1.1E+02 0.0024 21.3 2.7 25 142-166 6-30 (56)
419 PF02404 SCF: Stem cell factor 21.4 31 0.00068 31.3 0.0 22 136-157 214-235 (273)
420 KOG2140|consensus 21.3 38 0.00083 34.0 0.6 7 25-31 161-167 (739)
421 PF02529 PetG: Cytochrome B6-F 21.2 1.1E+02 0.0023 19.6 2.3 18 148-165 5-22 (37)
422 COG1393 ArsC Arsenate reductas 21.1 1.2E+02 0.0027 23.8 3.4 21 7-27 3-23 (117)
423 TIGR02830 spore_III_AG stage I 20.9 1.2E+02 0.0025 26.2 3.4 15 152-166 10-24 (186)
424 PF11287 DUF3088: Protein of u 20.5 80 0.0017 25.1 2.1 53 14-68 23-79 (112)
425 PHA03054 IMV membrane protein; 20.3 1.4E+02 0.003 21.8 3.1 20 112-131 15-34 (72)
426 PHA02692 hypothetical protein; 20.1 1.4E+02 0.0031 21.7 3.2 24 109-132 12-35 (70)
No 1
>KOG0913|consensus
Probab=99.95 E-value=3e-29 Score=217.96 Aligned_cols=164 Identities=38% Similarity=0.704 Sum_probs=153.8
Q ss_pred CCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecc
Q psy9732 1 MLQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNI 78 (250)
Q Consensus 1 ~~~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G 78 (250)
|++|.|||+|+|||||.|+.+.|.|+.+|..-.+..|.++.||++.++.|..||-|+..|||++ +|.+ ++| .|
T Consensus 37 ~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDGeF----rry-sg 111 (248)
T KOG0913|consen 37 LLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDGEF----RRY-SG 111 (248)
T ss_pred hhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeecccc----ccc-cC
Confidence 5789999999999999999999999999999888889999999999999999999999999999 9999 999 99
Q ss_pred ccChHHH--HhhhhccCCC-CCCCCCCCCCcceeehhhhHHHH--HHhhhccceeeEeecCCcchhHHHHHHHHHHHHHH
Q psy9732 79 AKEIEEL--FRVEHNFGQS-FIASTFPEHSTTIQCNVLMLISE--IQNKKMHNKMMEDYGIPAWGSYTIFAMVTIMIGAL 153 (250)
Q Consensus 79 ~~s~~~l--fI~~~~~~~~-p~p~~~~~~Pss~~~~~~~~~F~--~~~~~~~~~l~~~yg~a~W~~~~i~~~~t~~~g~~ 153 (250)
.|+..++ |+....|... |+|.| ..|.+..|.+.+.+|+ ..++..+ .+.+|.+.|.+|.+|+++++.+|.+
T Consensus 112 aRdk~dfisf~~~r~w~~i~p~p~w--~~p~S~~~~~~~~~~kl~~~~rdl~---~edlg~~~w~s~~l~a~v~~~~~~~ 186 (248)
T KOG0913|consen 112 ARDKNDFISFEEHREWQSIDPVPEW--EKPDSTEMSSASSLFKLEEELKDLG---DEDLGLPEWGSYNLFAGVTEFVGEA 186 (248)
T ss_pred cccchhHHHHHHhhhhhccCCcchh--cCCCchHHHHHHHHHhhHHHHHhcC---chhhcCchhhhhhhhhhHHHHHHHH
Confidence 9999999 8888888887 99999 9999999999999999 4456665 7889999999999999999999999
Q ss_pred HHHHHHHhhhccccCCccCCC
Q psy9732 154 LGLLLVFIIDQIYPPSAVVKK 174 (250)
Q Consensus 154 lgl~~v~~~d~~~~~k~~~~~ 174 (250)
+|++.++++|+.+|.++..++
T Consensus 187 l~~~~i~~~d~~~p~~~~~~~ 207 (248)
T KOG0913|consen 187 LGLLTIMTTDQGPPGKDGVTQ 207 (248)
T ss_pred HhhhhhheecccCCCccCccc
Confidence 999999999999999988766
No 2
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.90 E-value=2.1e-23 Score=183.28 Aligned_cols=146 Identities=21% Similarity=0.401 Sum_probs=109.7
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
+++|+|+||||||++|+++.|.|+++++.+++ .+.+++||+++++.++++|+|+++||+++ +|+. ..|..|.+
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~----v~~~~G~~ 126 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKM----YQYEGGDR 126 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEE----EEeeCCCC
Confidence 57999999999999999999999999999974 69999999999999999999999999998 9988 77767889
Q ss_pred ChHHH--HhhhhccCCCCCCCCCCCCCcceeehhhhHHHHHHh-hhccceeeEeecCCcchhHHHHHHHHHHHHHHHHHH
Q psy9732 81 EIEEL--FRVEHNFGQSFIASTFPEHSTTIQCNVLMLISEIQN-KKMHNKMMEDYGIPAWGSYTIFAMVTIMIGALLGLL 157 (250)
Q Consensus 81 s~~~l--fI~~~~~~~~p~p~~~~~~Pss~~~~~~~~~F~~~~-~~~~~~l~~~yg~a~W~~~~i~~~~t~~~g~~lgl~ 157 (250)
+.++| |+.+........|. .+|.+ .+..+.+++.... ...+.+...++ +..+++..++++|+++|++
T Consensus 127 s~e~L~~fi~~~~~~~~~~~~---p~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~ 196 (224)
T PTZ00443 127 STEKLAAFALGDFKKALGAPV---PAPLS-FFALTIDFFVSGTNEALRIYDAAFA------GFFTISSFAFLFGILMGLM 196 (224)
T ss_pred CHHHHHHHHHHHHHhhcCCCC---CCchH-HHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHH
Confidence 99999 88776543332221 22333 4445556665333 22333333333 2345566668899999999
Q ss_pred HHHhhh
Q psy9732 158 LVFIID 163 (250)
Q Consensus 158 ~v~~~d 163 (250)
+++++-
T Consensus 197 ~~~~~~ 202 (224)
T PTZ00443 197 IALFAF 202 (224)
T ss_pred HHHHHc
Confidence 996643
No 3
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.79 E-value=5e-19 Score=135.19 Aligned_cols=81 Identities=58% Similarity=1.225 Sum_probs=74.0
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
.+.|+|.||||||++|+++.|.|+++++.++..++.+++||+++++.++++|+|.++||+++ +|+. ..| .|.+
T Consensus 16 ~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~----~~~-~G~~ 90 (101)
T cd02994 16 EGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGVF----RRY-QGPR 90 (101)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCCE----EEe-cCCC
Confidence 56799999999999999999999999998865579999999999999999999999999998 8876 777 9999
Q ss_pred ChHHH--Hhh
Q psy9732 81 EIEEL--FRV 88 (250)
Q Consensus 81 s~~~l--fI~ 88 (250)
+.++| |+.
T Consensus 91 ~~~~l~~~i~ 100 (101)
T cd02994 91 DKEDLISFIE 100 (101)
T ss_pred CHHHHHHHHh
Confidence 99998 775
No 4
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.78 E-value=4.8e-19 Score=140.31 Aligned_cols=78 Identities=12% Similarity=0.174 Sum_probs=70.5
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCcccc-ccCcccccCceee--cCEeeeeeeeeeccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLS-GRFMVTALPTIFQ--EGIRGNIERGYFNIA 79 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~-~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~ 79 (250)
+++++|+||||||+||+++.|.|+++|+.+++ .+.|++|||+++..+| ++|+|.++||+++ +|+. ...| .|.
T Consensus 29 ~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~~---~~~y-~G~ 103 (113)
T cd03006 29 AEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSRG---PIEY-KGP 103 (113)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCChHHHHHhcCCcccCEEEEEECCcc---ceEE-eCC
Confidence 57899999999999999999999999999975 6999999999999999 5999999999998 7764 3667 899
Q ss_pred cChHHH
Q psy9732 80 KEIEEL 85 (250)
Q Consensus 80 ~s~~~l 85 (250)
++.+.|
T Consensus 104 ~~~~~i 109 (113)
T cd03006 104 MRAPYM 109 (113)
T ss_pred CCHHHH
Confidence 998887
No 5
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.77 E-value=3e-18 Score=129.60 Aligned_cols=83 Identities=31% Similarity=0.617 Sum_probs=76.5
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
+++++|.||++||++|+.+.|.|+++++.+++ ++.++.||+++++.++++|+|.++||+++ +|+. ...| .|.+
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~---~~~~-~g~~ 91 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKE---VKRY-NGPR 91 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEE---EEEE-ESSS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCCCCCEEEEEECCcE---EEEE-ECCC
Confidence 68999999999999999999999999999976 89999999999999999999999999998 8877 2355 9999
Q ss_pred ChHHH--Hhhhh
Q psy9732 81 EIEEL--FRVEH 90 (250)
Q Consensus 81 s~~~l--fI~~~ 90 (250)
+.++| ||++|
T Consensus 92 ~~~~l~~~i~~~ 103 (103)
T PF00085_consen 92 NAESLIEFIEKH 103 (103)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC
Confidence 99999 98875
No 6
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.76 E-value=1.8e-18 Score=132.46 Aligned_cols=78 Identities=22% Similarity=0.516 Sum_probs=70.7
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
.++|+|.||||||++|+++.|.|+++++.+++ .+.|++|||++++.+|++++|+++||+++ +|+. ...| .|.+
T Consensus 18 ~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~---~~~~-~G~~ 92 (101)
T cd03003 18 GEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGMN---PEKY-YGDR 92 (101)
T ss_pred CCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCCC---cccC-CCCC
Confidence 47899999999999999999999999999975 69999999999999999999999999988 7865 2566 8999
Q ss_pred ChHHH
Q psy9732 81 EIEEL 85 (250)
Q Consensus 81 s~~~l 85 (250)
+.++|
T Consensus 93 ~~~~l 97 (101)
T cd03003 93 SKESL 97 (101)
T ss_pred CHHHH
Confidence 98887
No 7
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.76 E-value=2e-18 Score=135.37 Aligned_cols=83 Identities=19% Similarity=0.432 Sum_probs=75.1
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
.++|+|.||||||++|+.+.|.|+++++.+++.++.+++||+++++.++++|+|.++||+++ +|+. ..+..|.+
T Consensus 24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~----~~~~~G~~ 99 (111)
T cd02963 24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQV----TFYHDSSF 99 (111)
T ss_pred CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEE----EEEecCCC
Confidence 58999999999999999999999999999975569999999999999999999999999998 8887 55558999
Q ss_pred ChHHH--Hhhh
Q psy9732 81 EIEEL--FRVE 89 (250)
Q Consensus 81 s~~~l--fI~~ 89 (250)
+.+.| ||.+
T Consensus 100 ~~~~l~~~i~~ 110 (111)
T cd02963 100 TKQHVVDFVRK 110 (111)
T ss_pred CHHHHHHHHhc
Confidence 98888 7764
No 8
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.74 E-value=4.5e-18 Score=131.31 Aligned_cols=79 Identities=25% Similarity=0.476 Sum_probs=70.4
Q ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc-CCccccccCcccccCceee--cCEeeeeeeeeecc
Q psy9732 2 LQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT-VSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNI 78 (250)
Q Consensus 2 ~~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d-~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G 78 (250)
..++++|.|||+||++|+++.|.|+++++.++ ++.+++||++ .++.++++|+|.++||+++ +|.. ..| .|
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~----~~~-~G 89 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPR----VRY-NG 89 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCCce----eEe-cC
Confidence 36789999999999999999999999999986 4889999998 7899999999999999998 7744 677 99
Q ss_pred ccChHHH--Hh
Q psy9732 79 AKEIEEL--FR 87 (250)
Q Consensus 79 ~~s~~~l--fI 87 (250)
.++.++| ||
T Consensus 90 ~~~~~~l~~f~ 100 (100)
T cd02999 90 TRTLDSLAAFY 100 (100)
T ss_pred CCCHHHHHhhC
Confidence 9999887 64
No 9
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.74 E-value=4.7e-18 Score=130.42 Aligned_cols=78 Identities=23% Similarity=0.483 Sum_probs=69.4
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cC-Eeeeeeeeeeccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EG-IRGNIERGYFNIA 79 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~G-k~~~~~~~y~~G~ 79 (250)
.++|+|.|||+||++|+++.|.|+++++.+++ .+.+++|||++++.+|++|+|.++||+++ +| +. ...| .|.
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~---~~~~-~G~ 93 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASK---YHSY-NGW 93 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCC---ceEc-cCC
Confidence 46899999999999999999999999999854 69999999999999999999999999998 65 44 3667 898
Q ss_pred cC-hHHH
Q psy9732 80 KE-IEEL 85 (250)
Q Consensus 80 ~s-~~~l 85 (250)
++ .++|
T Consensus 94 ~~~~~~l 100 (104)
T cd03004 94 HRDADSI 100 (104)
T ss_pred CCCHHHH
Confidence 86 8877
No 10
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.74 E-value=5.9e-18 Score=131.22 Aligned_cols=80 Identities=20% Similarity=0.466 Sum_probs=70.1
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCC-----CCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeee
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQD-----LNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGY 75 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~-----~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y 75 (250)
.++++|.||||||++|+++.|.|+++++.+++ .++.+++|||++++.++++|+|+++||+++ +|+. ....|
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~~--~~~~~ 95 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGMM--MKREY 95 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCcC--cceec
Confidence 46799999999999999999999999988642 258999999999999999999999999998 8873 23666
Q ss_pred eccccChHHH
Q psy9732 76 FNIAKEIEEL 85 (250)
Q Consensus 76 ~~G~~s~~~l 85 (250)
.|.++.++|
T Consensus 96 -~g~~~~~~l 104 (108)
T cd02996 96 -RGQRSVEAL 104 (108)
T ss_pred -CCCCCHHHH
Confidence 899999888
No 11
>KOG4277|consensus
Probab=99.74 E-value=1.7e-18 Score=156.16 Aligned_cols=115 Identities=24% Similarity=0.477 Sum_probs=91.4
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCC--CeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDL--NINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNI 78 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~--~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G 78 (250)
++.|+|+||||||+||+++.|+|.+++-.+++. .+.++++||+..+.++.+|+|++|||+.+ +|.. +.| .|
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a----~dY-RG 117 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHA----IDY-RG 117 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCee----eec-CC
Confidence 578999999999999999999999999998854 48999999999999999999999999999 6666 999 99
Q ss_pred ccChHHH--HhhhhccCCC-CCCCCCCCCCcceeehhhhHHHHHHhhhccceeeEeecCCc
Q psy9732 79 AKEIEEL--FRVEHNFGQS-FIASTFPEHSTTIQCNVLMLISEIQNKKMHNKMMEDYGIPA 136 (250)
Q Consensus 79 ~~s~~~l--fI~~~~~~~~-p~p~~~~~~Pss~~~~~~~~~F~~~~~~~~~~l~~~yg~a~ 136 (250)
.|+.+.| |..+..+.-. |++.- ...| ..++..|..+..|+|...
T Consensus 118 ~R~Kd~iieFAhR~a~aiI~pi~en-------------Q~~f-ehlq~Rhq~ffVf~Gtge 164 (468)
T KOG4277|consen 118 GREKDAIIEFAHRCAAAIIEPINEN-------------QIEF-EHLQARHQPFFVFFGTGE 164 (468)
T ss_pred CccHHHHHHHHHhcccceeeecChh-------------HHHH-HHHhhccCceEEEEeCCC
Confidence 9999999 8877654333 44321 0112 334455566667877643
No 12
>KOG0910|consensus
Probab=99.73 E-value=9.6e-18 Score=137.98 Aligned_cols=85 Identities=24% Similarity=0.408 Sum_probs=77.0
Q ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeeccc
Q psy9732 2 LQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIA 79 (250)
Q Consensus 2 ~~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~ 79 (250)
++.||+|+|||+||++|+.|.|.++++++.+++ .+.+++||.+++.+|+.+|+|.++||+++ +|+. .....|.
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~----~d~~vG~ 134 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEK----VDRFVGA 134 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC-eEEEEEEccccccchHhhcceeeeeEEEEEECCEE----eeeeccc
Confidence 478999999999999999999999999999965 79999999999999999999999999998 9988 6444899
Q ss_pred cChHHH--Hhhhhc
Q psy9732 80 KEIEEL--FRVEHN 91 (250)
Q Consensus 80 ~s~~~l--fI~~~~ 91 (250)
.+.+.| +|++..
T Consensus 135 ~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 135 VPKEQLRSLIKKFL 148 (150)
T ss_pred CCHHHHHHHHHHHh
Confidence 999888 877653
No 13
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.73 E-value=1.2e-17 Score=132.60 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=69.4
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
+++++|.|||+||++|+.|.|.++++++.+++ .+.|++||++++++++.+|+|.++||+++ +|+. .....|..
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~-~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~----v~~~~G~~ 88 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN-FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH----MKIDLGTG 88 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccC-ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE----EEEEcCCC
Confidence 67899999999999999999999999999864 58999999999999999999999999998 9988 55546776
Q ss_pred ChHHH
Q psy9732 81 EIEEL 85 (250)
Q Consensus 81 s~~~l 85 (250)
+...|
T Consensus 89 ~~~~~ 93 (114)
T cd02954 89 NNNKI 93 (114)
T ss_pred CCceE
Confidence 66555
No 14
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.72 E-value=2.1e-17 Score=124.87 Aligned_cols=80 Identities=28% Similarity=0.409 Sum_probs=71.4
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
.++++|.|||+||++|+++.|.++++++.+++ .+.+++||+++++.++++|+|.++||+++ +|+. .....|.+
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~----~~~~~g~~ 86 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP----VDGFQGAQ 86 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE----eeeecCCC
Confidence 46899999999999999999999999999964 69999999999999999999999999998 8877 43338998
Q ss_pred ChHHH--Hh
Q psy9732 81 EIEEL--FR 87 (250)
Q Consensus 81 s~~~l--fI 87 (250)
+.++| ++
T Consensus 87 ~~~~l~~~l 95 (96)
T cd02956 87 PEEQLRQML 95 (96)
T ss_pred CHHHHHHHh
Confidence 88887 54
No 15
>KOG0190|consensus
Probab=99.72 E-value=1e-17 Score=160.66 Aligned_cols=113 Identities=21% Similarity=0.352 Sum_probs=90.6
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCC--CeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDL--NINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNI 78 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~--~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G 78 (250)
+.-+||.||||||+||++++|.++++|+.++.. .+.+++|||+++..+|.+|+|++|||+.+ +|+. ...| +|
T Consensus 42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~---~~~Y-~G 117 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRS---AQDY-NG 117 (493)
T ss_pred CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCc---ceec-cC
Confidence 456789999999999999999999999999853 69999999999999999999999999988 9984 3788 99
Q ss_pred ccChHHH--HhhhhccCCCCCCCCCCCCCcceeehhhhHHHHHHhhhccceeeEee
Q psy9732 79 AKEIEEL--FRVEHNFGQSFIASTFPEHSTTIQCNVLMLISEIQNKKMHNKMMEDY 132 (250)
Q Consensus 79 ~~s~~~l--fI~~~~~~~~p~p~~~~~~Pss~~~~~~~~~F~~~~~~~~~~l~~~y 132 (250)
.|+++.| |+.+..++.+ ...... .....++...+.+++.++
T Consensus 118 ~r~adgIv~wl~kq~gPa~------------~~l~~~-~~a~~~l~~~~~~vig~F 160 (493)
T KOG0190|consen 118 PREADGIVKWLKKQSGPAS------------KTLKTV-DEAEEFLSKKDVVVIGFF 160 (493)
T ss_pred cccHHHHHHHHHhccCCCc------------eecccH-HHHHhhccCCceEEEEEe
Confidence 9999999 8888754333 222222 224456666666666665
No 16
>KOG0191|consensus
Probab=99.71 E-value=3.2e-17 Score=154.01 Aligned_cols=129 Identities=18% Similarity=0.333 Sum_probs=103.9
Q ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cC-Eeeeeeeeeecc
Q psy9732 2 LQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EG-IRGNIERGYFNI 78 (250)
Q Consensus 2 ~~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~G-k~~~~~~~y~~G 78 (250)
..++|+|+||||||+||+.+.|+|.+++..+++ .+.++.|||+++..+|++|+|+++||+.+ .| +. ..| .|
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~----~~~-~~ 119 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKP----IDY-SG 119 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCce----eec-cC
Confidence 368899999999999999999999999999975 79999999999999999999999999998 66 34 888 89
Q ss_pred ccChHHH--HhhhhccCCCCCCCCCCCCCcceeehhhhHHHH-HHhhhccceeeEeecCCcchhHHHHH
Q psy9732 79 AKEIEEL--FRVEHNFGQSFIASTFPEHSTTIQCNVLMLISE-IQNKKMHNKMMEDYGIPAWGSYTIFA 144 (250)
Q Consensus 79 ~~s~~~l--fI~~~~~~~~p~p~~~~~~Pss~~~~~~~~~F~-~~~~~~~~~l~~~yg~a~W~~~~i~~ 144 (250)
.++.+.+ |+............ +. -+..++...|+ ........+|++|| +|||+||.-.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~-----~~-~v~~l~~~~~~~~~~~~~~~~lv~f~--aPwc~~ck~l 180 (383)
T KOG0191|consen 120 PRNAESLAEFLIKELEPSVKKLV-----EG-EVFELTKDNFDETVKDSDADWLVEFY--APWCGHCKKL 180 (383)
T ss_pred cccHHHHHHHHHHhhcccccccc-----CC-ceEEccccchhhhhhccCcceEEEEe--ccccHHhhhc
Confidence 9999998 77666544442211 11 23455555566 44566788999998 9999998744
No 17
>PHA02278 thioredoxin-like protein
Probab=99.71 E-value=4.1e-17 Score=127.20 Aligned_cols=78 Identities=10% Similarity=0.193 Sum_probs=68.0
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCC----ccccccCcccccCceee--cCEeeeeeeeee
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS----PGLSGRFMVTALPTIFQ--EGIRGNIERGYF 76 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~----~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~ 76 (250)
+++++|+||||||++|+.|.|.++++++.+. .++.+++||++.+ +.++++|+|.++||+++ +|+. ....
T Consensus 14 ~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~----v~~~ 88 (103)
T PHA02278 14 KKDVIVMITQDNCGKCEILKSVIPMFQESGD-IKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQL----VKKY 88 (103)
T ss_pred CCcEEEEEECCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEE----EEEE
Confidence 6899999999999999999999999998863 3578999999986 68999999999999998 9888 5554
Q ss_pred ccccChHHH
Q psy9732 77 NIAKEIEEL 85 (250)
Q Consensus 77 ~G~~s~~~l 85 (250)
.|..+.+.|
T Consensus 89 ~G~~~~~~l 97 (103)
T PHA02278 89 EDQVTPMQL 97 (103)
T ss_pred eCCCCHHHH
Confidence 788877766
No 18
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.70 E-value=4.4e-17 Score=123.74 Aligned_cols=80 Identities=29% Similarity=0.684 Sum_probs=71.0
Q ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeec
Q psy9732 2 LQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQD--LNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFN 77 (250)
Q Consensus 2 ~~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~--~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~ 77 (250)
.+++++|.|||+||++|+++.|.|+++++.+++ .++.+++|||+.++.+|++|+|.++||+++ +|+. ...| .
T Consensus 15 ~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~---~~~~-~ 90 (102)
T cd03005 15 AEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGEK---VDKY-K 90 (102)
T ss_pred hcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCCe---eeEe-e
Confidence 356799999999999999999999999999864 369999999999999999999999999998 7765 2456 8
Q ss_pred cccChHHH
Q psy9732 78 IAKEIEEL 85 (250)
Q Consensus 78 G~~s~~~l 85 (250)
|.++.++|
T Consensus 91 G~~~~~~l 98 (102)
T cd03005 91 GTRDLDSL 98 (102)
T ss_pred CCCCHHHH
Confidence 99998877
No 19
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.70 E-value=5.9e-17 Score=124.90 Aligned_cols=83 Identities=28% Similarity=0.635 Sum_probs=73.3
Q ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeec
Q psy9732 2 LQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQD--LNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFN 77 (250)
Q Consensus 2 ~~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~--~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~ 77 (250)
.+++++|.|||+||++|+++.|.|+++++.+++ .++.++.+|+++.+.++++|+|.++||+++ +|.. ..| .
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~----~~~-~ 88 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA----YNY-R 88 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc----eee-c
Confidence 368999999999999999999999999999853 358999999999999999999999999998 5544 667 8
Q ss_pred cccChHHH--Hhhh
Q psy9732 78 IAKEIEEL--FRVE 89 (250)
Q Consensus 78 G~~s~~~l--fI~~ 89 (250)
|.++.++| |+++
T Consensus 89 G~~~~~~l~~~~~~ 102 (104)
T cd03000 89 GPRTKDDIVEFANR 102 (104)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999988 7765
No 20
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.69 E-value=8.6e-17 Score=125.36 Aligned_cols=80 Identities=24% Similarity=0.520 Sum_probs=68.2
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC-Cccccc-cCcccccCceee--cCEeeeeeeeeecc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV-SPGLSG-RFMVTALPTIFQ--EGIRGNIERGYFNI 78 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~-~~~l~~-rf~I~~~PT~i~--~Gk~~~~~~~y~~G 78 (250)
+++|||.||||||++|+++.|.|+++++.+++.++.++.||++. +..+|. +|+|+++||+++ +|.. ..+.| .|
T Consensus 21 ~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~~~--~~~~y-~g 97 (109)
T cd02993 21 NQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKNSR--QPIKY-PS 97 (109)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCCCC--Cceec-cC
Confidence 57999999999999999999999999999986569999999997 577886 599999999997 4321 23788 88
Q ss_pred c-cChHHH
Q psy9732 79 A-KEIEEL 85 (250)
Q Consensus 79 ~-~s~~~l 85 (250)
. ++.++|
T Consensus 98 ~~~~~~~l 105 (109)
T cd02993 98 EQRDVDSL 105 (109)
T ss_pred CCCCHHHH
Confidence 4 888887
No 21
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.69 E-value=7.1e-17 Score=124.37 Aligned_cols=83 Identities=25% Similarity=0.477 Sum_probs=71.0
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC--CccccccCcccccCceee--cCEe--eeeeeeee
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV--SPGLSGRFMVTALPTIFQ--EGIR--GNIERGYF 76 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~--~~~l~~rf~I~~~PT~i~--~Gk~--~~~~~~y~ 76 (250)
.++++|.|||+||++|+++.|.|+++++.+++ .+.++.||++. ++.++++|+|.++||+++ +|.. ......|
T Consensus 18 ~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~- 95 (109)
T cd03002 18 NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDY- 95 (109)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCcccccccccc-
Confidence 45699999999999999999999999999864 68999999998 889999999999999998 5531 0123677
Q ss_pred ccccChHHH--Hh
Q psy9732 77 NIAKEIEEL--FR 87 (250)
Q Consensus 77 ~G~~s~~~l--fI 87 (250)
.|.++.++| ||
T Consensus 96 ~G~~~~~~l~~fi 108 (109)
T cd03002 96 NGERSAKAIVDFV 108 (109)
T ss_pred cCccCHHHHHHHh
Confidence 899999988 76
No 22
>PRK09381 trxA thioredoxin; Provisional
Probab=99.67 E-value=3.5e-16 Score=121.09 Aligned_cols=83 Identities=24% Similarity=0.491 Sum_probs=74.3
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
+++|+|+||+|||++|+.+.|.|+++++.+.+ ++.++.||++.++.++++|+|.++||+++ +|+. .....|..
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~----~~~~~G~~ 95 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEV----AATKVGAL 95 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeE----EEEecCCC
Confidence 67899999999999999999999999999964 69999999999999999999999999998 8887 44338988
Q ss_pred ChHHH--Hhhhh
Q psy9732 81 EIEEL--FRVEH 90 (250)
Q Consensus 81 s~~~l--fI~~~ 90 (250)
+.+.| ++.++
T Consensus 96 ~~~~l~~~i~~~ 107 (109)
T PRK09381 96 SKGQLKEFLDAN 107 (109)
T ss_pred CHHHHHHHHHHh
Confidence 88888 77665
No 23
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.67 E-value=3.4e-16 Score=120.76 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=68.1
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
.++++|+|||+||++|+.+.|.++++++.+++..+.|+.+|++ ++.++++|+|+++||+++ +|+. .....|.
T Consensus 17 ~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~----~~~~~G~- 90 (102)
T cd02948 17 KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGEL----VAVIRGA- 90 (102)
T ss_pred CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEE----EEEEecC-
Confidence 6789999999999999999999999999987545889999999 778999999999999998 8887 5443564
Q ss_pred ChHHH--Hhh
Q psy9732 81 EIEEL--FRV 88 (250)
Q Consensus 81 s~~~l--fI~ 88 (250)
+.+.+ +|+
T Consensus 91 ~~~~~~~~i~ 100 (102)
T cd02948 91 NAPLLNKTIT 100 (102)
T ss_pred ChHHHHHHHh
Confidence 55665 554
No 24
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.66 E-value=1.6e-16 Score=127.20 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=72.7
Q ss_pred CCcEEEEEECCCCHH--HH--HHHHHHHHHHHHh-CCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeee
Q psy9732 3 QGEWMVEFFAPWCPA--CK--QMEKVWQEYSGWA-QDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGY 75 (250)
Q Consensus 3 ~g~~lV~FYApWC~~--Ck--~l~P~~e~la~~~-k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y 75 (250)
+.+++++|||+||++ |+ .+.|.++++|..+ +..++.|++||+++++.||++|+|.++||+++ +|+. ..|
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~G~~----v~~ 102 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDEV----IEY 102 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEEECCEE----EEe
Confidence 468899999999976 99 8889999988887 23479999999999999999999999999998 9998 677
Q ss_pred eccccChHHH--Hhhhh
Q psy9732 76 FNIAKEIEEL--FRVEH 90 (250)
Q Consensus 76 ~~G~~s~~~l--fI~~~ 90 (250)
.|.++.+.| |+.+.
T Consensus 103 -~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 103 -DGEFAADTLVEFLLDL 118 (120)
T ss_pred -eCCCCHHHHHHHHHHH
Confidence 999999999 88753
No 25
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.66 E-value=3.4e-16 Score=119.00 Aligned_cols=81 Identities=27% Similarity=0.601 Sum_probs=70.8
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
..+++|.|||+||++|+++.|.|.++++.+++ .+.++.+|+++++.++++|+|+++||+++ +|+. ....| .|.+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~--~~~~~-~g~~ 93 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKN--SPQDY-QGGR 93 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCCccCEEEEECCCCc--ceeec-CCCC
Confidence 34599999999999999999999999999864 69999999999999999999999999988 6622 23777 8999
Q ss_pred ChHHH--Hh
Q psy9732 81 EIEEL--FR 87 (250)
Q Consensus 81 s~~~l--fI 87 (250)
+.++| |+
T Consensus 94 ~~~~l~~~~ 102 (103)
T cd03001 94 TAKAIVSAA 102 (103)
T ss_pred CHHHHHHHh
Confidence 99888 64
No 26
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.66 E-value=4.7e-16 Score=120.27 Aligned_cols=73 Identities=11% Similarity=0.024 Sum_probs=63.6
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc---cccccCcccccCceee--cCEeeeeeeeeec
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP---GLSGRFMVTALPTIFQ--EGIRGNIERGYFN 77 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~---~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~ 77 (250)
.++++|+|||+||++|+.+.|.++++++.+. ++.|++||++++. .++++|+|+++||+++ +|+. .....
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~----v~~~~ 88 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEK----IHEEE 88 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeE----EEEEe
Confidence 5789999999999999999999999999983 6999999999874 8999999999999998 8887 43337
Q ss_pred cccC
Q psy9732 78 IAKE 81 (250)
Q Consensus 78 G~~s 81 (250)
|...
T Consensus 89 G~~~ 92 (103)
T cd02985 89 GIGP 92 (103)
T ss_pred CCCH
Confidence 7544
No 27
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.8e-16 Score=141.74 Aligned_cols=87 Identities=24% Similarity=0.471 Sum_probs=80.3
Q ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeeccc
Q psy9732 2 LQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIA 79 (250)
Q Consensus 2 ~~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~ 79 (250)
.+.||+|+||||||++|+++.|.+++++..+++ ++.+++||||+++.++.+|||+++||++. +|++ +.-+.|.
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqp----VdgF~G~ 116 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQP----VDGFQGA 116 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcC----ccccCCC
Confidence 456999999999999999999999999999974 89999999999999999999999999997 9999 6666999
Q ss_pred cChHHH--HhhhhccC
Q psy9732 80 KEIEEL--FRVEHNFG 93 (250)
Q Consensus 80 ~s~~~l--fI~~~~~~ 93 (250)
.+.+.+ |++++.+.
T Consensus 117 qPesqlr~~ld~~~~~ 132 (304)
T COG3118 117 QPESQLRQFLDKVLPA 132 (304)
T ss_pred CcHHHHHHHHHHhcCh
Confidence 999999 99988755
No 28
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.64 E-value=5.5e-16 Score=117.13 Aligned_cols=85 Identities=31% Similarity=0.586 Sum_probs=74.5
Q ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-CeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecc
Q psy9732 2 LQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDL-NINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNI 78 (250)
Q Consensus 2 ~~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~-~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G 78 (250)
..++++|.||++||++|+++.|.|+++++.+++. ++.++.+|+++++.++++|+|.++|++++ +|.. ...| .|
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~---~~~~-~g 87 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKK---PVDY-EG 87 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCc---ceee-cC
Confidence 3578999999999999999999999999998743 59999999999999999999999999987 5542 2778 99
Q ss_pred ccChHHH--Hhhhh
Q psy9732 79 AKEIEEL--FRVEH 90 (250)
Q Consensus 79 ~~s~~~l--fI~~~ 90 (250)
..+.+.| ||+++
T Consensus 88 ~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 88 GRDLEAIVEFVNEK 101 (102)
T ss_pred CCCHHHHHHHHHhc
Confidence 9999988 88765
No 29
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.63 E-value=1.2e-15 Score=115.93 Aligned_cols=80 Identities=29% Similarity=0.623 Sum_probs=68.4
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeeccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQD-LNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIA 79 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~-~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~ 79 (250)
.++++|.||||||++|+++.|.|+++++.+++ .++.+++||++++ .++..+++.++||+++ +|+. .....| .|.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~-~~~~~~-~g~ 94 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDK-SNPIKY-EGD 94 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCc-CCceEc-cCC
Confidence 36899999999999999999999999999875 4699999999987 5788999999999998 6651 113667 899
Q ss_pred cChHHH
Q psy9732 80 KEIEEL 85 (250)
Q Consensus 80 ~s~~~l 85 (250)
++.++|
T Consensus 95 ~~~~~l 100 (104)
T cd02995 95 RTLEDL 100 (104)
T ss_pred cCHHHH
Confidence 998887
No 30
>PRK10996 thioredoxin 2; Provisional
Probab=99.62 E-value=2.2e-15 Score=122.94 Aligned_cols=83 Identities=22% Similarity=0.484 Sum_probs=74.3
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
+++++|.|||+||++|+++.|.++++++.+.+ ++.+++||+++++.++++|+|.++||+++ +|+. .....|..
T Consensus 52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~----v~~~~G~~ 126 (139)
T PRK10996 52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQV----VDMLNGAV 126 (139)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEE----EEEEcCCC
Confidence 57899999999999999999999999999864 69999999999999999999999999998 8887 54448999
Q ss_pred ChHHH--Hhhhh
Q psy9732 81 EIEEL--FRVEH 90 (250)
Q Consensus 81 s~~~l--fI~~~ 90 (250)
+.+.| |+++.
T Consensus 127 ~~e~l~~~l~~~ 138 (139)
T PRK10996 127 PKAPFDSWLNEA 138 (139)
T ss_pred CHHHHHHHHHHh
Confidence 98888 77654
No 31
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.61 E-value=1.9e-15 Score=114.68 Aligned_cols=79 Identities=25% Similarity=0.592 Sum_probs=69.2
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhC-CCCeEEEEEECcC-CccccccCcccccCceee--cC-Eeeeeeeeeec
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQ-DLNINVAQVDVTV-SPGLSGRFMVTALPTIFQ--EG-IRGNIERGYFN 77 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k-~~~v~va~VD~d~-~~~l~~rf~I~~~PT~i~--~G-k~~~~~~~y~~ 77 (250)
.++++|.|||+||++|+++.|.|+++++.++ ..++.++++|++. ++.++++|+|.++||+++ +| +. ...| .
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~~~---~~~~-~ 93 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGSTE---PVKY-E 93 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCCCC---cccc-C
Confidence 3489999999999999999999999999987 3469999999999 999999999999999998 44 22 3666 8
Q ss_pred cccChHHH
Q psy9732 78 IAKEIEEL 85 (250)
Q Consensus 78 G~~s~~~l 85 (250)
|.++.++|
T Consensus 94 g~~~~~~l 101 (105)
T cd02998 94 GGRDLEDL 101 (105)
T ss_pred CccCHHHH
Confidence 99998887
No 32
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.61 E-value=2.5e-15 Score=114.23 Aligned_cols=79 Identities=25% Similarity=0.440 Sum_probs=69.3
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCeEEEEEECcC--CccccccCcccccCceee--cCEeeeeeeeeec
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQD-LNINVAQVDVTV--SPGLSGRFMVTALPTIFQ--EGIRGNIERGYFN 77 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~-~~v~va~VD~d~--~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~ 77 (250)
.++++|.|||+||++|+++.|.++++++.++. ..+.++.+|++. ++.++++|+|+++||+++ +|+. ...| .
T Consensus 17 ~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~~---~~~~-~ 92 (104)
T cd02997 17 EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGKF---VEKY-E 92 (104)
T ss_pred CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCCe---eEEe-C
Confidence 45899999999999999999999999999863 468999999998 899999999999999988 7765 2566 8
Q ss_pred cccChHHH
Q psy9732 78 IAKEIEEL 85 (250)
Q Consensus 78 G~~s~~~l 85 (250)
|..+.+.+
T Consensus 93 g~~~~~~l 100 (104)
T cd02997 93 GERTAEDI 100 (104)
T ss_pred CCCCHHHH
Confidence 98888776
No 33
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.61 E-value=2.2e-15 Score=125.24 Aligned_cols=66 Identities=32% Similarity=0.668 Sum_probs=61.6
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccc------cCceee--cCEe
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA------LPTIFQ--EGIR 68 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~------~PT~i~--~Gk~ 68 (250)
+++|+|+||||||++|+++.|.|+++++.+++.++.|++||++++++++++|+|.+ +||+++ +|+.
T Consensus 47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~ 120 (152)
T cd02962 47 RVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKE 120 (152)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEE
Confidence 46899999999999999999999999999875569999999999999999999998 999998 9988
No 34
>KOG0907|consensus
Probab=99.61 E-value=2e-15 Score=118.36 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=65.1
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
+++++|+|||+|||+|+.+.|.+++|+.+|.+ +.|++||+++...++++++|...|||+| +|+. ..-..|..
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~----~~~~vGa~ 94 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEE----VDEVVGAN 94 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecccCHhHHHhcCceEeeEEEEEECCEE----EEEEecCC
Confidence 47899999999999999999999999999974 9999999999999999999999999999 8877 44435654
Q ss_pred Ch
Q psy9732 81 EI 82 (250)
Q Consensus 81 s~ 82 (250)
..
T Consensus 95 ~~ 96 (106)
T KOG0907|consen 95 KA 96 (106)
T ss_pred HH
Confidence 43
No 35
>KOG0190|consensus
Probab=99.60 E-value=1e-15 Score=147.03 Aligned_cols=86 Identities=29% Similarity=0.541 Sum_probs=73.4
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-CeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeeccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDL-NINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIA 79 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~-~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~ 79 (250)
++.+||+||||||+||+++.|+|++||+.+++. ++.+|+||++.|. ...+.+.++|||++ .|.. ..+..| .|.
T Consensus 384 ~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~~~pag~k-~~pv~y-~g~ 459 (493)
T KOG0190|consen 384 GKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTILFFPAGHK-SNPVIY-NGD 459 (493)
T ss_pred ccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEEEecCCCC-CCCccc-CCC
Confidence 678999999999999999999999999999864 7999999999987 34557777999999 3331 235888 999
Q ss_pred cChHHH--Hhhhhcc
Q psy9732 80 KEIEEL--FRVEHNF 92 (250)
Q Consensus 80 ~s~~~l--fI~~~~~ 92 (250)
|+.++| |+.++..
T Consensus 460 R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 460 RTLEDLKKFIKKSAT 474 (493)
T ss_pred cchHHHHhhhccCCC
Confidence 999999 9988765
No 36
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.59 E-value=6e-15 Score=110.83 Aligned_cols=83 Identities=19% Similarity=0.435 Sum_probs=72.5
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
.++++|.||++||++|+.+.|.++++++.+. .++.++.||++.++.++++|+|.++||+++ +|+. .....|..
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~----~~~~~g~~ 88 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE-GKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE----VDRSVGAL 88 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE----eeeecCCC
Confidence 3589999999999999999999999998885 369999999999999999999999999998 7776 33337888
Q ss_pred ChHHH--Hhhhh
Q psy9732 81 EIEEL--FRVEH 90 (250)
Q Consensus 81 s~~~l--fI~~~ 90 (250)
+.+.| |+.+.
T Consensus 89 ~~~~l~~~l~~~ 100 (101)
T TIGR01068 89 PKAALKQLINKN 100 (101)
T ss_pred CHHHHHHHHHhh
Confidence 88888 77654
No 37
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.58 E-value=1.1e-14 Score=119.37 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=70.6
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCC--ccccccCcccccCceee---cCEeeeeeeeeec
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS--PGLSGRFMVTALPTIFQ---EGIRGNIERGYFN 77 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~--~~l~~rf~I~~~PT~i~---~Gk~~~~~~~y~~ 77 (250)
.++++|+|||+||++|+++.|.++++++.+.+ ++.|+.||++.. ..++++|+|.++||+++ +|+. .....
T Consensus 20 gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~----v~~~~ 94 (142)
T cd02950 20 GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE----EGQSI 94 (142)
T ss_pred CCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE----EEEEe
Confidence 57899999999999999999999999999864 578888888754 57899999999999998 6777 54448
Q ss_pred cccChHHH--Hhhhhc
Q psy9732 78 IAKEIEEL--FRVEHN 91 (250)
Q Consensus 78 G~~s~~~l--fI~~~~ 91 (250)
|..+.++| ++.+..
T Consensus 95 G~~~~~~l~~~l~~l~ 110 (142)
T cd02950 95 GLQPKQVLAQNLDALV 110 (142)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 99988888 666544
No 38
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.58 E-value=8.6e-15 Score=110.41 Aligned_cols=77 Identities=29% Similarity=0.476 Sum_probs=66.3
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
+++++|.||++||++|+++.|.++++++.+ ..++.+++||+++.+.++++|+|.++||+++ +|+. .....|.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~----~~~~~g~- 87 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI----VDRVSGA- 87 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccccCHHHHHhcCCccccEEEEEECCEE----EEEEeCC-
Confidence 478999999999999999999999999997 3579999999999999999999999999998 8877 5553553
Q ss_pred ChHHH
Q psy9732 81 EIEEL 85 (250)
Q Consensus 81 s~~~l 85 (250)
..+.|
T Consensus 88 ~~~~l 92 (97)
T cd02984 88 DPKEL 92 (97)
T ss_pred CHHHH
Confidence 34443
No 39
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.57 E-value=4.4e-15 Score=116.50 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=63.3
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
+++++|+||||||++|+.+.|.++++++.+. ++.|++||++++ .++++|+|.++||+++ +|+. .....|..
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~----v~~~~G~~ 96 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA-FLVNYLDIKVLPTLLVYKNGEL----IDNIVGFE 96 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh-HHHHhcCCCcCCEEEEEECCEE----EEEEecHH
Confidence 3789999999999999999999999999985 489999999998 9999999999999998 9988 44435644
Q ss_pred C
Q psy9732 81 E 81 (250)
Q Consensus 81 s 81 (250)
+
T Consensus 97 ~ 97 (113)
T cd02957 97 E 97 (113)
T ss_pred H
Confidence 3
No 40
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.57 E-value=8e-15 Score=109.15 Aligned_cols=78 Identities=31% Similarity=0.562 Sum_probs=68.4
Q ss_pred CcEEEEEECCCCHHHHHHHHHHHHHHHHhC-CCCeEEEEEECcCCccccccCcccccCceee--cC-Eeeeeeeeeeccc
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQ-DLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EG-IRGNIERGYFNIA 79 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e~la~~~k-~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~G-k~~~~~~~y~~G~ 79 (250)
++++|.||++||++|+.+.|.|+++++.++ ..++.++.||+++++.++++|+|.++||+++ +| +. ...| .|.
T Consensus 16 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~---~~~~-~g~ 91 (101)
T cd02961 16 KDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKE---PVKY-EGP 91 (101)
T ss_pred CcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCcc---cccC-CCC
Confidence 489999999999999999999999999984 3479999999999999999999999999998 44 23 2666 888
Q ss_pred cChHHH
Q psy9732 80 KEIEEL 85 (250)
Q Consensus 80 ~s~~~l 85 (250)
.+.++|
T Consensus 92 ~~~~~i 97 (101)
T cd02961 92 RTLESL 97 (101)
T ss_pred cCHHHH
Confidence 888776
No 41
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.57 E-value=1.3e-14 Score=110.47 Aligned_cols=78 Identities=12% Similarity=0.184 Sum_probs=70.2
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
+++++|.||++||++|+.+.|.++++++.+.+ ++.++.||+++++.++++++|.++||+++ +|+. .....|..
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~----v~~~~g~~ 87 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKEL----VKEISGVK 87 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeE----EEEEeCCc
Confidence 57899999999999999999999999999864 69999999999999999999999999998 8877 44448988
Q ss_pred ChHHH
Q psy9732 81 EIEEL 85 (250)
Q Consensus 81 s~~~l 85 (250)
+.++|
T Consensus 88 ~~~~~ 92 (97)
T cd02949 88 MKSEY 92 (97)
T ss_pred cHHHH
Confidence 88887
No 42
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.57 E-value=8.7e-15 Score=115.62 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=70.1
Q ss_pred CCcEEEEEECCC--CHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecc
Q psy9732 3 QGEWMVEFFAPW--CPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNI 78 (250)
Q Consensus 3 ~g~~lV~FYApW--C~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G 78 (250)
+++.+|.|||+| ||+|+.+.|.++++++.+++ .+.+++||+++++.++.+|+|.++||+++ +|+. .....|
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~-~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~----v~~~~G 101 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG-RFRAAVVGRADEQALAARFGVLRTPALLFFRDGRY----VGVLAG 101 (111)
T ss_pred CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC-cEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEE----EEEEeC
Confidence 688999999997 99999999999999999964 68999999999999999999999999998 9988 544478
Q ss_pred ccChHHH
Q psy9732 79 AKEIEEL 85 (250)
Q Consensus 79 ~~s~~~l 85 (250)
..+.+++
T Consensus 102 ~~~~~e~ 108 (111)
T cd02965 102 IRDWDEY 108 (111)
T ss_pred ccCHHHH
Confidence 8877664
No 43
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.57 E-value=3.8e-15 Score=118.55 Aligned_cols=81 Identities=20% Similarity=0.285 Sum_probs=67.6
Q ss_pred CCcEEEEEEC--CCCH---HHHHHHHHHHHHHHHhCCCCeEEEEEEC-----cCCccccccCccc--ccCceee--cCEe
Q psy9732 3 QGEWMVEFFA--PWCP---ACKQMEKVWQEYSGWAQDLNINVAQVDV-----TVSPGLSGRFMVT--ALPTIFQ--EGIR 68 (250)
Q Consensus 3 ~g~~lV~FYA--pWC~---~Ck~l~P~~e~la~~~k~~~v~va~VD~-----d~~~~l~~rf~I~--~~PT~i~--~Gk~ 68 (250)
+..+||+||| |||+ ||++++|.+.+.+. .|.+++||| +++..||++|+|+ +|||+++ +|..
T Consensus 18 ~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-----~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~ 92 (116)
T cd03007 18 FKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-----DLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGDF 92 (116)
T ss_pred CCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-----ceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCCc
Confidence 5679999999 9999 99999999887664 388999999 5678899999999 9999988 7741
Q ss_pred eeeeeeeeccc-cChHHH--Hhhhh
Q psy9732 69 GNIERGYFNIA-KEIEEL--FRVEH 90 (250)
Q Consensus 69 ~~~~~~y~~G~-~s~~~l--fI~~~ 90 (250)
..+..| .|. |+.++| ||.++
T Consensus 93 -~~~~~Y-~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 93 -ENPVPY-SGADVTVDALQRFLKGN 115 (116)
T ss_pred -CCCccC-CCCcccHHHHHHHHHhc
Confidence 012678 896 999999 98875
No 44
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.57 E-value=8.3e-15 Score=115.58 Aligned_cols=64 Identities=20% Similarity=0.320 Sum_probs=60.5
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEe
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIR 68 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~ 68 (250)
+++++|.||+|||++|+.+.|.++++++.+. ++.+++||+++++.++++|+|.++||+++ +|+.
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~ 87 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKT 87 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEE
Confidence 5789999999999999999999999999985 48999999999999999999999999998 9987
No 45
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.56 E-value=1.3e-14 Score=119.37 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=66.7
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCcee-e--cCEeeeeeeeeecc-
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF-Q--EGIRGNIERGYFNI- 78 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i-~--~Gk~~~~~~~y~~G- 78 (250)
+++++|.|||+||++|+.+.|.++++++.+++ .+.|++||+|+++++++.|+|.+.||++ | +|++ ...+..|
T Consensus 23 ~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~-~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~~---~vd~~tG~ 98 (142)
T PLN00410 23 ERLVVIRFGHDWDETCMQMDEVLASVAETIKN-FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKHI---MIDLGTGN 98 (142)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCeE---EEEEeccc
Confidence 67899999999999999999999999999864 5888999999999999999999776666 4 8873 1555577
Q ss_pred -------ccChHHH
Q psy9732 79 -------AKEIEEL 85 (250)
Q Consensus 79 -------~~s~~~l 85 (250)
..+.++|
T Consensus 99 ~~k~~~~~~~k~~l 112 (142)
T PLN00410 99 NNKINWALKDKQEF 112 (142)
T ss_pred ccccccccCCHHHH
Confidence 4566666
No 46
>PTZ00102 disulphide isomerase; Provisional
Probab=99.56 E-value=1e-14 Score=139.18 Aligned_cols=88 Identities=24% Similarity=0.403 Sum_probs=77.7
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQD--LNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNI 78 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~--~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G 78 (250)
.+.++|.||||||++|+++.|.|+++++.++. .++.+++|||+++..+|++|+|.++||+++ +|.. ..| .|
T Consensus 49 ~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~----~~y-~g 123 (477)
T PTZ00102 49 NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNP----VNY-SG 123 (477)
T ss_pred CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCce----EEe-cC
Confidence 45799999999999999999999999988753 359999999999999999999999999988 7776 577 99
Q ss_pred ccChHHH--HhhhhccCCC
Q psy9732 79 AKEIEEL--FRVEHNFGQS 95 (250)
Q Consensus 79 ~~s~~~l--fI~~~~~~~~ 95 (250)
.++.+.| |+.+....+.
T Consensus 124 ~~~~~~l~~~l~~~~~~~~ 142 (477)
T PTZ00102 124 GRTADGIVSWIKKLTGPAV 142 (477)
T ss_pred CCCHHHHHHHHHHhhCCCc
Confidence 9999999 9988865443
No 47
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.55 E-value=8.8e-15 Score=112.47 Aligned_cols=78 Identities=26% Similarity=0.286 Sum_probs=66.9
Q ss_pred CCcEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCeEEEEEECcC----CccccccCcccccCceee-c---CEeeee
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVW---QEYSGWAQDLNINVAQVDVTV----SPGLSGRFMVTALPTIFQ-E---GIRGNI 71 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~---e~la~~~k~~~v~va~VD~d~----~~~l~~rf~I~~~PT~i~-~---Gk~~~~ 71 (250)
+++++|.|||+||++|+++.|.+ +++++.+++ ++.++.||+++ .+.++++|+|.++||+++ + |+.
T Consensus 11 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~--- 86 (104)
T cd02953 11 GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPE--- 86 (104)
T ss_pred CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCC---
Confidence 67899999999999999999988 688888865 79999999987 568899999999999999 4 554
Q ss_pred eeeeeccccChHHH
Q psy9732 72 ERGYFNIAKEIEEL 85 (250)
Q Consensus 72 ~~~y~~G~~s~~~l 85 (250)
..++ .|..+.++|
T Consensus 87 ~~~~-~G~~~~~~l 99 (104)
T cd02953 87 PLRL-PGFLTADEF 99 (104)
T ss_pred Cccc-ccccCHHHH
Confidence 3445 899998887
No 48
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.55 E-value=2.7e-14 Score=124.24 Aligned_cols=125 Identities=15% Similarity=0.098 Sum_probs=87.6
Q ss_pred CCCcEEEEEEC---CCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeee
Q psy9732 2 LQGEWMVEFFA---PWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYF 76 (250)
Q Consensus 2 ~~g~~lV~FYA---pWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~ 76 (250)
..+..++.|++ +||++|+.+.|.++++++.+....+.++.+|.++++.++++|+|.++||+++ +|+. ...++
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~--~~~~~- 94 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKD--GGIRY- 94 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCee--eEEEE-
Confidence 45667888999 9999999999999999999854346677777779999999999999999998 7766 11245
Q ss_pred ccccChHHH--HhhhhccCCCCCCCCCCCCCcceeehhhhHHHHHHhhhccc-eeeEeecCCcchhHHHH
Q psy9732 77 NIAKEIEEL--FRVEHNFGQSFIASTFPEHSTTIQCNVLMLISEIQNKKMHN-KMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 77 ~G~~s~~~l--fI~~~~~~~~p~p~~~~~~Pss~~~~~~~~~F~~~~~~~~~-~l~~~yg~a~W~~~~i~ 143 (250)
.|..+.+++ |++.......... .+.....+.+...... .+..|+ ++||.||-.
T Consensus 95 ~G~~~~~~l~~~i~~~~~~~~~~~------------~L~~~~~~~l~~~~~pv~I~~F~--a~~C~~C~~ 150 (215)
T TIGR02187 95 TGIPAGYEFAALIEDIVRVSQGEP------------GLSEKTVELLQSLDEPVRIEVFV--TPTCPYCPY 150 (215)
T ss_pred eecCCHHHHHHHHHHHHHhcCCCC------------CCCHHHHHHHHhcCCCcEEEEEE--CCCCCCcHH
Confidence 898888888 7776642221100 1111122222222222 444577 999999984
No 49
>PLN02309 5'-adenylylsulfate reductase
Probab=99.54 E-value=1.8e-14 Score=138.38 Aligned_cols=85 Identities=22% Similarity=0.516 Sum_probs=73.2
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc-CCccccc-cCcccccCceee--cCEeeeeeeeeecc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT-VSPGLSG-RFMVTALPTIFQ--EGIRGNIERGYFNI 78 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d-~~~~l~~-rf~I~~~PT~i~--~Gk~~~~~~~y~~G 78 (250)
.++|||+||||||++|++|.|.|+++++.+.+.++.|++||++ .+..++. +|+|+++|||++ +|.. ....|..|
T Consensus 365 ~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~~g~~--~~v~Y~~~ 442 (457)
T PLN02309 365 KEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFPKNSS--RPIKYPSE 442 (457)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEeCCCC--CeeecCCC
Confidence 5789999999999999999999999999997667999999999 7788886 699999999998 5532 23778335
Q ss_pred ccChHHH--Hhhh
Q psy9732 79 AKEIEEL--FRVE 89 (250)
Q Consensus 79 ~~s~~~l--fI~~ 89 (250)
.|+.++| ||+.
T Consensus 443 ~R~~~~L~~fv~~ 455 (457)
T PLN02309 443 KRDVDSLLSFVNS 455 (457)
T ss_pred CcCHHHHHHHHHH
Confidence 7999999 8875
No 50
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.54 E-value=2.6e-14 Score=113.26 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=61.2
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEe
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIR 68 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~ 68 (250)
+++++|.|+|+||++|+.|.|.++++|+.+++ .+.|++||+++.+++++.|+|.+.||++| +|+.
T Consensus 14 ~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~-~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 14 EKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK-MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred CCEEEEEEeCCCChhHHHHHHHHHHHHHHccC-ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 68999999999999999999999999999964 39999999999999999999999999998 8877
No 51
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.53 E-value=2.3e-14 Score=135.26 Aligned_cols=87 Identities=24% Similarity=0.466 Sum_probs=75.9
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCC--CeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDL--NINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNI 78 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~--~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G 78 (250)
.++++|.||||||++|+++.|.|.++++.++.. ++.+++|||++++.+|++|+|.++||+++ +|+. ....| .|
T Consensus 18 ~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~--~~~~~-~g 94 (462)
T TIGR01130 18 HEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGED--SVSDY-NG 94 (462)
T ss_pred CCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCcc--ceeEe-cC
Confidence 467999999999999999999999999988643 49999999999999999999999999988 6652 12677 89
Q ss_pred ccChHHH--Hhhhhcc
Q psy9732 79 AKEIEEL--FRVEHNF 92 (250)
Q Consensus 79 ~~s~~~l--fI~~~~~ 92 (250)
.++.++| |+.+..+
T Consensus 95 ~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 95 PRDADGIVKYMKKQSG 110 (462)
T ss_pred CCCHHHHHHHHHHhcC
Confidence 9999999 9988753
No 52
>PTZ00051 thioredoxin; Provisional
Probab=99.53 E-value=3.1e-14 Score=107.71 Aligned_cols=71 Identities=24% Similarity=0.397 Sum_probs=63.1
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeeccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIA 79 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~ 79 (250)
+++++|.||++||++|+++.|.++++++.+. ++.++.||++++..++++|+|.++||+++ +|+. .....|.
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~----~~~~~G~ 90 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSV----VDTLLGA 90 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeE----EEEEeCC
Confidence 4689999999999999999999999999874 58999999999999999999999999988 8887 4443664
No 53
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.51 E-value=3.5e-14 Score=136.52 Aligned_cols=85 Identities=22% Similarity=0.484 Sum_probs=71.0
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc-ccc-ccCcccccCceee--cCEeeeeeeeeecc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP-GLS-GRFMVTALPTIFQ--EGIRGNIERGYFNI 78 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~-~l~-~rf~I~~~PT~i~--~Gk~~~~~~~y~~G 78 (250)
.++|||+||||||++|+.|.|.|+++++.+++.++.|++||++.+. .++ ++|+|.++||+++ +|.. .+..|..|
T Consensus 371 ~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g~~--~~~~Y~~g 448 (463)
T TIGR00424 371 KEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHSS--RPIKYPSE 448 (463)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEECCCC--CceeCCCC
Confidence 5789999999999999999999999999997656999999999764 455 6899999999998 6642 23678236
Q ss_pred ccChHHH--Hhhh
Q psy9732 79 AKEIEEL--FRVE 89 (250)
Q Consensus 79 ~~s~~~l--fI~~ 89 (250)
.|+.++| ||+.
T Consensus 449 ~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 449 KRDVDSLMSFVNL 461 (463)
T ss_pred CCCHHHHHHHHHh
Confidence 8999999 8864
No 54
>PTZ00102 disulphide isomerase; Provisional
Probab=99.51 E-value=6.5e-14 Score=133.73 Aligned_cols=88 Identities=30% Similarity=0.501 Sum_probs=76.9
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeeccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQD-LNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIA 79 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~-~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~ 79 (250)
.+++||.||||||++|+.+.|.|+++++.+++ ..+.++++|++.+..++++|+|+++||+++ +|.. .+..| .|.
T Consensus 375 ~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~--~~~~~-~G~ 451 (477)
T PTZ00102 375 DKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGER--TPIPY-EGE 451 (477)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCc--ceeEe-cCc
Confidence 57899999999999999999999999999874 358999999999999999999999999998 5533 23577 999
Q ss_pred cChHHH--HhhhhccC
Q psy9732 80 KEIEEL--FRVEHNFG 93 (250)
Q Consensus 80 ~s~~~l--fI~~~~~~ 93 (250)
++.+.| ||.++...
T Consensus 452 ~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 452 RTVEGFKEFVNKHATN 467 (477)
T ss_pred CCHHHHHHHHHHcCCC
Confidence 999999 99988643
No 55
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.51 E-value=4.7e-14 Score=111.31 Aligned_cols=62 Identities=31% Similarity=0.654 Sum_probs=55.3
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CCeEEEEEECc--CCccccccCcccccCceee
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQD--LNINVAQVDVT--VSPGLSGRFMVTALPTIFQ 64 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~--~~v~va~VD~d--~~~~l~~rf~I~~~PT~i~ 64 (250)
.++|+|.|||+||++|+.+.|.|+++++.+++ ..+.++.|||+ .++.++++|+|+++||+++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRY 84 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEE
Confidence 35899999999999999999999999998853 24899999986 4678999999999999998
No 56
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.48 E-value=1.6e-13 Score=100.32 Aligned_cols=77 Identities=23% Similarity=0.296 Sum_probs=66.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceeecCEeeeeeeeeeccccChHHH
Q psy9732 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 6 ~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~~Gk~~~~~~~y~~G~~s~~~l 85 (250)
.+..||++||++|+.+.|.++++++.++ ..+.+..||+++++.++++|++.++||++++|+. .+ .|..+.++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~~g~~-----~~-~G~~~~~~l 74 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG-DAVEVEYINVMENPQKAMEYGIMAVPAIVINGDV-----EF-IGAPTKEEL 74 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc-CceEEEEEeCccCHHHHHHcCCccCCEEEECCEE-----EE-ecCCCHHHH
Confidence 4678999999999999999999999985 3699999999999999999999999999997754 44 688888887
Q ss_pred --Hhhh
Q psy9732 86 --FRVE 89 (250)
Q Consensus 86 --fI~~ 89 (250)
++.+
T Consensus 75 ~~~l~~ 80 (82)
T TIGR00411 75 VEAIKK 80 (82)
T ss_pred HHHHHh
Confidence 5543
No 57
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.48 E-value=2.5e-13 Score=98.90 Aligned_cols=77 Identities=30% Similarity=0.509 Sum_probs=67.3
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
.++++|.||++||++|+.+.|.++++++. ..++.++.+|++.++.++++|++.++||+++ +|+. ...+ .|..
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~---~~~~-~g~~ 83 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKE---VDRV-VGAD 83 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEE---EEEE-ecCC
Confidence 37899999999999999999999999988 3479999999999999999999999999998 7775 2444 7877
Q ss_pred ChHHH
Q psy9732 81 EIEEL 85 (250)
Q Consensus 81 s~~~l 85 (250)
+.+.|
T Consensus 84 ~~~~l 88 (93)
T cd02947 84 PKEEL 88 (93)
T ss_pred CHHHH
Confidence 77776
No 58
>KOG0191|consensus
Probab=99.47 E-value=5.4e-14 Score=132.17 Aligned_cols=133 Identities=23% Similarity=0.423 Sum_probs=97.2
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeeccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQD-LNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIA 79 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~-~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~ 79 (250)
+..|+|.||+|||+||+.++|.|++++..++. ..+.++.+||+....++.+++|.++||+.+ +|.. ....| .|.
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~--~~~~~-~~~ 238 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE--DIYYY-SGL 238 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc--ccccc-ccc
Confidence 67899999999999999999999999999873 579999999999999999999999999988 3322 12444 899
Q ss_pred cChHHH--HhhhhccCCC---CCCCCCCCCCcceeehhhh-HHHHHHhhhccceeeEeecCCcchhHHH
Q psy9732 80 KEIEEL--FRVEHNFGQS---FIASTFPEHSTTIQCNVLM-LISEIQNKKMHNKMMEDYGIPAWGSYTI 142 (250)
Q Consensus 80 ~s~~~l--fI~~~~~~~~---p~p~~~~~~Pss~~~~~~~-~~F~~~~~~~~~~l~~~yg~a~W~~~~i 142 (250)
|+.+.+ |+.+...... .+..+ ..+.+....... +.|-.........++.++ ++||+++.
T Consensus 239 R~~~~i~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 303 (383)
T KOG0191|consen 239 RDSDSIVSFVEKKERRNIPEPELKEI--EDKDTFSPTFLDTAEFLDSLEKKKNKFVKFY--APWCGHCG 303 (383)
T ss_pred ccHHHHHHHHHhhcCCCCCCcccccc--cCccccccchhhhhhhhhhhHHhhhhHhhhh--cchhhccc
Confidence 999999 8887766532 33333 233211111111 222233444556777887 89999865
No 59
>KOG0912|consensus
Probab=99.46 E-value=6.1e-14 Score=126.74 Aligned_cols=87 Identities=18% Similarity=0.392 Sum_probs=78.4
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhC----CCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeee
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQ----DLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYF 76 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k----~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~ 76 (250)
...++|.|||+||+.++.++|+|++.|..++ ++++.+++|||+.+..++.+|.|..|||+.+ +|.+ ..+.|
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~--~~rEY- 89 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEM--MKREY- 89 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccch--hhhhh-
Confidence 4678999999999999999999999988754 5679999999999999999999999999987 9988 44678
Q ss_pred ccccChHHH--Hhhhhcc
Q psy9732 77 NIAKEIEEL--FRVEHNF 92 (250)
Q Consensus 77 ~G~~s~~~l--fI~~~~~ 92 (250)
.|.|+++.| ||++...
T Consensus 90 Rg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 90 RGQRSVEALIEFIEKQLS 107 (375)
T ss_pred ccchhHHHHHHHHHHHhc
Confidence 999999999 9998763
No 60
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.44 E-value=3e-13 Score=107.31 Aligned_cols=77 Identities=17% Similarity=0.337 Sum_probs=63.7
Q ss_pred CcEEEEEECCCCHHHHHHHHHHH---HHHHHhCCCCeEEEEEECcCC-------------ccccccCcccccCceee---
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQ---EYSGWAQDLNINVAQVDVTVS-------------PGLSGRFMVTALPTIFQ--- 64 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e---~la~~~k~~~v~va~VD~d~~-------------~~l~~rf~I~~~PT~i~--- 64 (250)
++++|.|||+||++|+++.|.+. ++.+.+++ ++.++.||++.. ..++.+|+|.++||+++
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~ 93 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLDP 93 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEcC
Confidence 68999999999999999999885 56666653 688999999864 57899999999999988
Q ss_pred c-CEeeeeeeeeeccccChHHH
Q psy9732 65 E-GIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 65 ~-Gk~~~~~~~y~~G~~s~~~l 85 (250)
+ |+. .....|..+.+.+
T Consensus 94 ~gg~~----~~~~~G~~~~~~~ 111 (125)
T cd02951 94 EGGKE----IARLPGYLPPDEF 111 (125)
T ss_pred CCCce----eEEecCCCCHHHH
Confidence 4 566 4444898888877
No 61
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.44 E-value=3.4e-13 Score=114.47 Aligned_cols=62 Identities=18% Similarity=0.347 Sum_probs=58.4
Q ss_pred CcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEe
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIR 68 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~ 68 (250)
++++|+||||||++|+.|.|.++++|+.+. .+.|++||+++. .++.+|+|.++||+++ +|+.
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~ 147 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT-GASDEFDTDALPALLVYKGGEL 147 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch-hhHHhCCCCCCCEEEEEECCEE
Confidence 489999999999999999999999999985 599999999987 8999999999999998 9988
No 62
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.43 E-value=3.5e-13 Score=106.26 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=68.0
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
+..++|.|||+||++|+.+.|.++++++.+ ..+.+..||+++++.++++|+|.++||+++ +|... ....+ .|..
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~-~~~~~-~G~~ 97 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKD-GGIRY-YGLP 97 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeec-ceEEE-EecC
Confidence 345788999999999999999999999886 369999999999999999999999999999 54331 11245 7888
Q ss_pred ChHHH--Hhhh
Q psy9732 81 EIEEL--FRVE 89 (250)
Q Consensus 81 s~~~l--fI~~ 89 (250)
+..+| +|..
T Consensus 98 ~~~el~~~i~~ 108 (113)
T cd02975 98 AGYEFASLIED 108 (113)
T ss_pred chHHHHHHHHH
Confidence 88887 6543
No 63
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.41 E-value=5.5e-13 Score=101.57 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=71.7
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCccc--ccCceee--c--CEeeeeeeeee
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVT--ALPTIFQ--E--GIRGNIERGYF 76 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~--~~PT~i~--~--Gk~~~~~~~y~ 76 (250)
.+++++.||++||++|+.+.|.++++|+++++ ++.|+.||+++++.+++.|+|. ++|++++ + |+. +.+.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k----~~~~ 86 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG-KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKK----YLMP 86 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccc----cCCC
Confidence 57899999999999999999999999999974 7999999999999999999999 9999998 4 555 5563
Q ss_pred ccccChHHH--Hhhh
Q psy9732 77 NIAKEIEEL--FRVE 89 (250)
Q Consensus 77 ~G~~s~~~l--fI~~ 89 (250)
.|..+.++| |+.+
T Consensus 87 ~~~~~~~~l~~fi~~ 101 (103)
T cd02982 87 EEELTAESLEEFVED 101 (103)
T ss_pred ccccCHHHHHHHHHh
Confidence 455588888 8765
No 64
>PTZ00062 glutaredoxin; Provisional
Probab=99.39 E-value=4.8e-12 Score=110.01 Aligned_cols=114 Identities=9% Similarity=-0.029 Sum_probs=82.7
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
+|..+++|||+||++|++|.|.+.++++.++ ++.|++||.+ |+|.++|||++ +|+. ...+.|.
T Consensus 17 ~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d--------~~V~~vPtfv~~~~g~~----i~r~~G~- 81 (204)
T PTZ00062 17 TGKLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA--------DANNEYGVFEFYQNSQL----INSLEGC- 81 (204)
T ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc--------cCcccceEEEEEECCEE----EeeeeCC-
Confidence 4889999999999999999999999999985 5999999987 99999999999 9888 5654664
Q ss_pred ChHHH--HhhhhccCCCCCCCCCCCCCcceeehhhhHHHHHHhhhccceeeEeecC--CcchhHHHHHHH
Q psy9732 81 EIEEL--FRVEHNFGQSFIASTFPEHSTTIQCNVLMLISEIQNKKMHNKMMEDYGI--PAWGSYTIFAMV 146 (250)
Q Consensus 81 s~~~l--fI~~~~~~~~p~p~~~~~~Pss~~~~~~~~~F~~~~~~~~~~l~~~yg~--a~W~~~~i~~~~ 146 (250)
++..+ ++.++... ++. .......+.++....-++... |. .|||.||.-+..
T Consensus 82 ~~~~~~~~~~~~~~~----------~~~----~~~~~~v~~li~~~~Vvvf~K-g~~~~p~C~~C~~~k~ 136 (204)
T PTZ00062 82 NTSTLVSFIRGWAQK----------GSS----EDTVEKIERLIRNHKILLFMK-GSKTFPFCRFSNAVVN 136 (204)
T ss_pred CHHHHHHHHHHHcCC----------CCH----HHHHHHHHHHHhcCCEEEEEc-cCCCCCCChhHHHHHH
Confidence 46667 88776531 111 123333445555544444333 42 479999885533
No 65
>KOG0908|consensus
Probab=99.38 E-value=7.6e-13 Score=116.85 Aligned_cols=82 Identities=21% Similarity=0.342 Sum_probs=69.9
Q ss_pred CcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeeccccC
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAKE 81 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~s 81 (250)
+.++|+|+|.||++|++++|.|+.++.+|+ +..|++||+++.++++..+||.+.|||++ +|+. +....| .+
T Consensus 22 k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k----id~~qG-Ad 94 (288)
T KOG0908|consen 22 KLVVVDFTASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK----IDQIQG-AD 94 (288)
T ss_pred eEEEEEEEecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHHhhchhhhcCcccCceEEEEecCeE----eeeecC-CC
Confidence 368999999999999999999999999996 58999999999999999999999999998 8877 555255 55
Q ss_pred hHHH--Hhhhhcc
Q psy9732 82 IEEL--FRVEHNF 92 (250)
Q Consensus 82 ~~~l--fI~~~~~ 92 (250)
+..| .|.++..
T Consensus 95 ~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 95 ASGLEEKVAKYAS 107 (288)
T ss_pred HHHHHHHHHHHhc
Confidence 6666 5655543
No 66
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.35 E-value=4.4e-12 Score=119.80 Aligned_cols=88 Identities=27% Similarity=0.532 Sum_probs=72.9
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCC-C-CeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQD-L-NINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNI 78 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~-~-~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G 78 (250)
+++++|.||||||++|+.+.|.|+++++.+++ . ++.+++||++.+.. .. ++|.++||+++ +|.. ..+..| .|
T Consensus 364 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~-~~-~~i~~~Pt~~~~~~~~~-~~~~~~-~g 439 (462)
T TIGR01130 364 TKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDV-PP-FEVEGFPTIKFVPAGKK-SEPVPY-DG 439 (462)
T ss_pred CCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCcc-CC-CCccccCEEEEEeCCCC-cCceEe-cC
Confidence 57899999999999999999999999999975 2 69999999998753 33 99999999999 5532 012567 89
Q ss_pred ccChHHH--HhhhhccCC
Q psy9732 79 AKEIEEL--FRVEHNFGQ 94 (250)
Q Consensus 79 ~~s~~~l--fI~~~~~~~ 94 (250)
.++.++| |+.++...+
T Consensus 440 ~~~~~~l~~~l~~~~~~~ 457 (462)
T TIGR01130 440 DRTLEDFSKFIAKHATFP 457 (462)
T ss_pred cCCHHHHHHHHHhcCCCC
Confidence 9999999 998886444
No 67
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.32 E-value=4e-12 Score=90.13 Aligned_cols=60 Identities=23% Similarity=0.444 Sum_probs=54.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceeecCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~~Gk~ 68 (250)
++.||++||++|+++.+.+++++... .++.+..+|+++++++++++++.++||++++|+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~~~~~l~~~~~i~~vPti~i~~~~ 62 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN--PNISAEMIDAAEFPDLADEYGVMSVPAIVINGKV 62 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC--CceEEEEEEcccCHhHHHHcCCcccCEEEECCEE
Confidence 67899999999999999999998764 3699999999999999999999999999987765
No 68
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.31 E-value=8.1e-12 Score=100.02 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=58.6
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc-----------cccccCc----ccccCceee--c
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP-----------GLSGRFM----VTALPTIFQ--E 65 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~-----------~l~~rf~----I~~~PT~i~--~ 65 (250)
.+..+|+|+++|||+|+.+.|.++++++.. ++.+..||++.+. .+.++|+ |.++||+++ +
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~ 99 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITD 99 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeC
Confidence 355799999999999999999999999983 4678888887543 3335554 556999998 9
Q ss_pred CEeeeeeeeeecc-ccChHHH
Q psy9732 66 GIRGNIERGYFNI-AKEIEEL 85 (250)
Q Consensus 66 Gk~~~~~~~y~~G-~~s~~~l 85 (250)
|+. .....| ..+.++|
T Consensus 100 Gk~----v~~~~G~~~~~~~l 116 (122)
T TIGR01295 100 GKQ----VSVRCGSSTTAQEL 116 (122)
T ss_pred CeE----EEEEeCCCCCHHHH
Confidence 988 555467 5567777
No 69
>PHA02125 thioredoxin-like protein
Probab=99.30 E-value=7.8e-12 Score=91.42 Aligned_cols=54 Identities=22% Similarity=0.460 Sum_probs=47.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceeecCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~~Gk~ 68 (250)
++.|||+||++|+.+.|.+++++ +.+++||+++++.++++|+|.++||++ +|+.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~~~l~~~~~v~~~PT~~-~g~~ 55 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEGVELTAKHHIRSLPTLV-NTST 55 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCCHHHHHHcCCceeCeEE-CCEE
Confidence 78999999999999999997652 458899999999999999999999988 5554
No 70
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.30 E-value=4.5e-12 Score=100.71 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=58.3
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc-cccccCcccc--cCceee---cCEeeeeeeeee
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP-GLSGRFMVTA--LPTIFQ---EGIRGNIERGYF 76 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~-~l~~rf~I~~--~PT~i~---~Gk~~~~~~~y~ 76 (250)
++++||.|||+||++|+.|.|.+.+.+.... .+..|+.||++.+. .+..+|++.+ +||+++ +|+........
T Consensus 19 ~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~~- 96 (117)
T cd02959 19 GKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIINK- 96 (117)
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhccC-
Confidence 6799999999999999999999999877654 23456667776554 4567899986 999999 77761111123
Q ss_pred ccccChHHH
Q psy9732 77 NIAKEIEEL 85 (250)
Q Consensus 77 ~G~~s~~~l 85 (250)
.|..+...+
T Consensus 97 ~~~~~~~~f 105 (117)
T cd02959 97 KGNPNYKYF 105 (117)
T ss_pred CCCcccccc
Confidence 455555554
No 71
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.29 E-value=7.8e-12 Score=91.86 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=55.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceeecCEeeeeeeeeecccc-ChHHH
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGIRGNIERGYFNIAK-EIEEL 85 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~~Gk~~~~~~~y~~G~~-s~~~l 85 (250)
|.|||+||++|+.+.|.++++++++. ..+.+.+|| +...+.++++.++||++++|+. . + .|.. +.+.+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~-~~~~~~~v~---~~~~a~~~~v~~vPti~i~G~~----~-~-~G~~~~~~~l 71 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELG-IDAEFEKVT---DMNEILEAGVTATPGVAVDGEL----V-I-MGKIPSKEEI 71 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcC-CCeEEEEeC---CHHHHHHcCCCcCCEEEECCEE----E-E-EeccCCHHHH
Confidence 88999999999999999999999985 468888887 3334788999999999999987 4 4 6753 33444
No 72
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.28 E-value=8.4e-12 Score=99.83 Aligned_cols=61 Identities=23% Similarity=0.417 Sum_probs=55.8
Q ss_pred CCcEEEEEEC-------CCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC-------CccccccCccc-ccCceee
Q psy9732 3 QGEWMVEFFA-------PWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV-------SPGLSGRFMVT-ALPTIFQ 64 (250)
Q Consensus 3 ~g~~lV~FYA-------pWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~-------~~~l~~rf~I~-~~PT~i~ 64 (250)
.++++|.||| +||++|+.+.|.+++++..+++ ++.|++||+++ +..++.+++|. ++||+++
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~ 96 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR 96 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence 4789999999 9999999999999999999863 69999999976 45899999998 9999998
No 73
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.27 E-value=8.9e-12 Score=107.33 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=58.4
Q ss_pred CcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeeccc
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIA 79 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~ 79 (250)
.+++|+||++||++|+.|.|.|+++|..+. .+.|++||++.. +.+|+|.++||+++ +|+. +..+.|.
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~~---~~~~~i~~lPTlliyk~G~~----v~~ivG~ 171 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQC---IPNYPDKNLPTILVYRNGDI----VKQFIGL 171 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHHh---HhhCCCCCCCEEEEEECCEE----EEEEeCc
Confidence 479999999999999999999999999985 599999999864 58999999999998 9988 4443553
No 74
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.18 E-value=5.4e-11 Score=103.49 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=65.2
Q ss_pred CCc-EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceeecCEeeeeeeeeeccccC
Q psy9732 3 QGE-WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGIRGNIERGYFNIAKE 81 (250)
Q Consensus 3 ~g~-~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~~Gk~~~~~~~y~~G~~s 81 (250)
+++ .++.|||+||++|+.+.|.+++++... .++.+..||.++++.++++|+|.++||++++++. ..+ .|..+
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~--~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~----~~~-~G~~~ 204 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN--DKILGEMIEANENPDLAEKYGVMSVPKIVINKGV----EEF-VGAYP 204 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc--CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCC----EEE-ECCCC
Confidence 344 455599999999999999999999885 3689999999999999999999999999992212 225 78888
Q ss_pred hHHH--Hhhh
Q psy9732 82 IEEL--FRVE 89 (250)
Q Consensus 82 ~~~l--fI~~ 89 (250)
.++| ++.+
T Consensus 205 ~~~l~~~l~~ 214 (215)
T TIGR02187 205 EEQFLEYILS 214 (215)
T ss_pred HHHHHHHHHh
Confidence 8887 6653
No 75
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.17 E-value=1.3e-10 Score=92.10 Aligned_cols=76 Identities=16% Similarity=0.301 Sum_probs=58.9
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEE-----------------------CcCCccccccCccccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVD-----------------------VTVSPGLSGRFMVTAL 59 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD-----------------------~d~~~~l~~rf~I~~~ 59 (250)
.++++|.|||+||++|+++.|.++++++.+ ++.|+.|+ ++.+..+++.|++.++
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 468999999999999999999999998875 26666555 3445577889999999
Q ss_pred Cceee---cCEeeeeeeeeeccccChHHH
Q psy9732 60 PTIFQ---EGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 60 PT~i~---~Gk~~~~~~~y~~G~~s~~~l 85 (250)
|+.++ +|+. +....|..+.+.|
T Consensus 102 P~~~~ld~~G~v----~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGII----RYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceE----EEEEeccCChHhc
Confidence 95555 8887 4433788876643
No 76
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.17 E-value=6.3e-11 Score=95.04 Aligned_cols=67 Identities=24% Similarity=0.387 Sum_probs=55.1
Q ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCC--CeEEEEEECcCCc-------------------------cccccC
Q psy9732 2 LQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDL--NINVAQVDVTVSP-------------------------GLSGRF 54 (250)
Q Consensus 2 ~~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~--~v~va~VD~d~~~-------------------------~l~~rf 54 (250)
..++++|.|||+||++|+.+.|.++++++.+++. ++.+..|+.+..+ .+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3578999999999999999999999999988753 5777777766432 456679
Q ss_pred cccccCceee---cCEe
Q psy9732 55 MVTALPTIFQ---EGIR 68 (250)
Q Consensus 55 ~I~~~PT~i~---~Gk~ 68 (250)
+|.++||+++ +|+.
T Consensus 96 ~v~~iPt~~lid~~G~i 112 (132)
T cd02964 96 KVEGIPTLVVLKPDGDV 112 (132)
T ss_pred CCCCCCEEEEECCCCCE
Confidence 9999999998 6776
No 77
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.17 E-value=7.5e-11 Score=97.52 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=58.9
Q ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhCC-------CCeEEEEEECcCCc-------------------------c
Q psy9732 2 LQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQD-------LNINVAQVDVTVSP-------------------------G 49 (250)
Q Consensus 2 ~~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~-------~~v~va~VD~d~~~-------------------------~ 49 (250)
..++++|.|||+||++|+++.|.+.++.+.+++ .++.++.|+.+++. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 357899999999999999999999998876643 24888888766431 4
Q ss_pred ccccCcccccCceee---cCEeeeeeeeeeccccCh
Q psy9732 50 LSGRFMVTALPTIFQ---EGIRGNIERGYFNIAKEI 82 (250)
Q Consensus 50 l~~rf~I~~~PT~i~---~Gk~~~~~~~y~~G~~s~ 82 (250)
++.+|+|.++||.++ +|+. +.. .|....
T Consensus 104 l~~~y~v~~iPt~vlId~~G~V----v~~-~~~~~i 134 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDV----LAA-NAVDEI 134 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcE----Eee-ChHHHH
Confidence 677899999999998 8887 554 554443
No 78
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.16 E-value=1.1e-10 Score=113.97 Aligned_cols=82 Identities=15% Similarity=0.211 Sum_probs=67.2
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEE----------------------------ECcCCccccccC
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQV----------------------------DVTVSPGLSGRF 54 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~V----------------------------D~d~~~~l~~rf 54 (250)
.++++|+|||+||++|++++|.++++++.++..++.|+.| +++.+..++++|
T Consensus 56 GKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~f 135 (521)
T PRK14018 56 DKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSL 135 (521)
T ss_pred CCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHHc
Confidence 4689999999999999999999999999987545666544 334556788999
Q ss_pred cccccCceee---cCEeeeeeeeeeccccChHHH--Hhh
Q psy9732 55 MVTALPTIFQ---EGIRGNIERGYFNIAKEIEEL--FRV 88 (250)
Q Consensus 55 ~I~~~PT~i~---~Gk~~~~~~~y~~G~~s~~~l--fI~ 88 (250)
+|.++||+++ +|++ +....|..+.++| +|+
T Consensus 136 gV~giPTt~IIDkdGkI----V~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 136 NISVYPSWAIIGKDGDV----QRIVKGSISEAQALALIR 170 (521)
T ss_pred CCCCcCeEEEEcCCCeE----EEEEeCCCCHHHHHHHHH
Confidence 9999999965 8888 5544899999988 666
No 79
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.15 E-value=9.8e-11 Score=93.33 Aligned_cols=67 Identities=19% Similarity=0.401 Sum_probs=54.8
Q ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCC--CeEEEEEECcCC------------------------ccccccCc
Q psy9732 2 LQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDL--NINVAQVDVTVS------------------------PGLSGRFM 55 (250)
Q Consensus 2 ~~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~--~v~va~VD~d~~------------------------~~l~~rf~ 55 (250)
..++++|.||++||++|+++.|.+.++.+.+++. ++.++.|+.+.. ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 3578999999999999999999999998887632 566776666533 35678999
Q ss_pred ccccCceee---cCEe
Q psy9732 56 VTALPTIFQ---EGIR 68 (250)
Q Consensus 56 I~~~PT~i~---~Gk~ 68 (250)
|.++|++++ +|+.
T Consensus 97 v~~~P~~~lid~~G~i 112 (131)
T cd03009 97 IEGIPTLIILDADGEV 112 (131)
T ss_pred CCCCCEEEEECCCCCE
Confidence 999999998 7776
No 80
>KOG1731|consensus
Probab=99.15 E-value=9.3e-12 Score=120.44 Aligned_cols=61 Identities=25% Similarity=0.541 Sum_probs=54.9
Q ss_pred CcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCC--eEEEEEECc--CCccccccCcccccCceee
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLN--INVAQVDVT--VSPGLSGRFMVTALPTIFQ 64 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~--v~va~VD~d--~~~~l~~rf~I~~~PT~i~ 64 (250)
.-++|+||++|||||++++|+|+++|+.+.... +.++.|||. +|..+|+.|+|++|||+.+
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlry 122 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRY 122 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeee
Confidence 357899999999999999999999999987433 789999995 5789999999999999998
No 81
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.15 E-value=1.6e-10 Score=86.82 Aligned_cols=64 Identities=20% Similarity=0.443 Sum_probs=53.0
Q ss_pred CcEEEEEECCCCHHHHHHHHHHHHHHHHhC-CCCeEEEEEECcCCc-------------------------cccccCccc
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQ-DLNINVAQVDVTVSP-------------------------GLSGRFMVT 57 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e~la~~~k-~~~v~va~VD~d~~~-------------------------~l~~rf~I~ 57 (250)
++++|.|||+||++|++..|.+.++.+.++ +.++.++.|..++.. .+.+.|+|.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 81 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGIN 81 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-T
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCC
Confidence 689999999999999999999999999998 457999998877542 577788999
Q ss_pred ccCceee---cCE
Q psy9732 58 ALPTIFQ---EGI 67 (250)
Q Consensus 58 ~~PT~i~---~Gk 67 (250)
++|++++ +|+
T Consensus 82 ~iP~~~lld~~G~ 94 (95)
T PF13905_consen 82 GIPTLVLLDPDGK 94 (95)
T ss_dssp SSSEEEEEETTSB
T ss_pred cCCEEEEECCCCC
Confidence 9999988 665
No 82
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.14 E-value=4.5e-11 Score=92.42 Aligned_cols=78 Identities=29% Similarity=0.395 Sum_probs=56.4
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHH---HHhCCCCeEEEEEECcCC--------------------ccccccCccccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYS---GWAQDLNINVAQVDVTVS--------------------PGLSGRFMVTAL 59 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la---~~~k~~~v~va~VD~d~~--------------------~~l~~rf~I~~~ 59 (250)
.++.+|.|++|||++|+++.+.+.+.. ..++ .++.++.++++.. ..++++|+|.++
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLK-DDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEH-CECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhh-cCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 578999999999999999999888644 4443 2588888888643 358999999999
Q ss_pred Cceee---cCEeeeeeeeeeccccChHHH
Q psy9732 60 PTIFQ---EGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 60 PT~i~---~Gk~~~~~~~y~~G~~s~~~l 85 (250)
||+++ +|+. +....|..+.++|
T Consensus 84 Pt~~~~d~~G~~----v~~~~G~~~~~~l 108 (112)
T PF13098_consen 84 PTIVFLDKDGKI----VYRIPGYLSPEEL 108 (112)
T ss_dssp SEEEECTTTSCE----EEEEESS--HHHH
T ss_pred CEEEEEcCCCCE----EEEecCCCCHHHH
Confidence 99999 5876 4333899998887
No 83
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.12 E-value=2.9e-10 Score=85.72 Aligned_cols=66 Identities=27% Similarity=0.480 Sum_probs=59.5
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCC-----------------------ccccccCccccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS-----------------------PGLSGRFMVTAL 59 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~-----------------------~~l~~rf~I~~~ 59 (250)
.++++|.||++||++|++..+.+.++.+.+...++.++.|+++.+ ..+++.|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 468999999999999999999999999998756799999999886 788999999999
Q ss_pred Cceee---cCEe
Q psy9732 60 PTIFQ---EGIR 68 (250)
Q Consensus 60 PT~i~---~Gk~ 68 (250)
|++++ +|+.
T Consensus 99 P~~~l~d~~g~v 110 (116)
T cd02966 99 PTTFLIDRDGRI 110 (116)
T ss_pred ceEEEECCCCcE
Confidence 99988 6766
No 84
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.12 E-value=4.2e-10 Score=93.26 Aligned_cols=83 Identities=18% Similarity=0.323 Sum_probs=68.9
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC----------------------CccccccCcccccC
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV----------------------SPGLSGRFMVTALP 60 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~----------------------~~~l~~rf~I~~~P 60 (250)
.++++|.||++||++|++..|.+.++++++++.++.++.|+++. +..++++|+|.++|
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 140 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLP 140 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcC
Confidence 56899999999999999999999999999976668888888753 45778999999999
Q ss_pred ceee---cCEeeeeeeeeeccccChHHH--Hhhh
Q psy9732 61 TIFQ---EGIRGNIERGYFNIAKEIEEL--FRVE 89 (250)
Q Consensus 61 T~i~---~Gk~~~~~~~y~~G~~s~~~l--fI~~ 89 (250)
++++ +|+. ...+ .|..+.+++ ++++
T Consensus 141 ~~~lid~~g~i---~~~~-~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 141 TTFLIDKDGKV---VKVI-TGEMTEEQLEEYLEK 170 (173)
T ss_pred eEEEECCCCcE---EEEE-eCCCCHHHHHHHHHH
Confidence 8877 7877 2344 898988888 6654
No 85
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.11 E-value=2.4e-10 Score=86.76 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=62.5
Q ss_pred cEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceeecCEeeeeeeeeeccccChHH
Q psy9732 5 EWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGIRGNIERGYFNIAKEIEE 84 (250)
Q Consensus 5 ~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~~Gk~~~~~~~y~~G~~s~~~ 84 (250)
.-+..|+++||++|..+.+.++++++.+. ++.+..+|.++.+.++.+|+|.++||++++|+. . + .|..+.++
T Consensus 14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~~e~a~~~~V~~vPt~vidG~~----~-~-~G~~~~~e 85 (89)
T cd03026 14 INFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALFQDEVEERGIMSVPAIFLNGEL----F-G-FGRMTLEE 85 (89)
T ss_pred EEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhCHHHHHHcCCccCCEEEECCEE----E-E-eCCCCHHH
Confidence 35788999999999999999999998864 699999999999999999999999999888876 3 3 57666554
Q ss_pred H
Q psy9732 85 L 85 (250)
Q Consensus 85 l 85 (250)
+
T Consensus 86 ~ 86 (89)
T cd03026 86 I 86 (89)
T ss_pred H
Confidence 3
No 86
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.10 E-value=2.4e-10 Score=103.28 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=62.1
Q ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC-----------CccccccCcccccCceee--c-CE
Q psy9732 2 LQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV-----------SPGLSGRFMVTALPTIFQ--E-GI 67 (250)
Q Consensus 2 ~~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~-----------~~~l~~rf~I~~~PT~i~--~-Gk 67 (250)
..+++||.|||+||++|+++.|.++++++.+. +.|..|+++. +.+++++|+|.++||+++ . |.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence 46789999999999999999999999999983 5666666654 347889999999999998 2 43
Q ss_pred eeeeeeeeeccccChHHH
Q psy9732 68 RGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 68 ~~~~~~~y~~G~~s~~~l 85 (250)
. + .....|..+.++|
T Consensus 242 ~--v-~~v~~G~~s~~eL 256 (271)
T TIGR02740 242 Q--F-TPIGFGVMSADEL 256 (271)
T ss_pred E--E-EEEEeCCCCHHHH
Confidence 3 1 3332588999888
No 87
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.09 E-value=4.5e-10 Score=93.49 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=56.0
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCC------------ccc-cccC---cccccCceee--
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS------------PGL-SGRF---MVTALPTIFQ-- 64 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~------------~~l-~~rf---~I~~~PT~i~-- 64 (250)
.+..+|+|||+||++|+++.|.++++++++. +.|..|+.+.. ... ...| ++.++||.++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~---~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG---LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC---CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 4567999999999999999999999999873 45555555432 222 2345 7899999998
Q ss_pred -cCEeeeeeeeeeccccChHHH
Q psy9732 65 -EGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 65 -~Gk~~~~~~~y~~G~~s~~~l 85 (250)
+|.. . +....|..+.+++
T Consensus 127 ~~G~~--i-~~~~~G~~s~~~l 145 (153)
T TIGR02738 127 VNTRK--A-YPVLQGAVDEAEL 145 (153)
T ss_pred CCCCE--E-EEEeecccCHHHH
Confidence 5443 1 3223798888877
No 88
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.07 E-value=3.2e-10 Score=112.16 Aligned_cols=83 Identities=25% Similarity=0.377 Sum_probs=67.5
Q ss_pred CCcEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCeEEEEEECcCC----ccccccCcccccCceee---cCEeeee-
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVW---QEYSGWAQDLNINVAQVDVTVS----PGLSGRFMVTALPTIFQ---EGIRGNI- 71 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~---e~la~~~k~~~v~va~VD~d~~----~~l~~rf~I~~~PT~i~---~Gk~~~~- 71 (250)
.++++|+|||+||++|+.+.+.. .++.+.++ ++.++++|++++ .+++++|+|.++||+++ +|+. .
T Consensus 474 gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~--i~ 549 (571)
T PRK00293 474 GKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQE--IP 549 (571)
T ss_pred CCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCC--cc
Confidence 47899999999999999999975 67888775 589999999864 57899999999999998 5765 1
Q ss_pred eeeeeccccChHHH--Hhhhh
Q psy9732 72 ERGYFNIAKEIEEL--FRVEH 90 (250)
Q Consensus 72 ~~~y~~G~~s~~~l--fI~~~ 90 (250)
..++ .|..+.+++ ++++.
T Consensus 550 ~~r~-~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 550 DARV-TGFMDAAAFAAHLRQL 569 (571)
T ss_pred cccc-cCCCCHHHHHHHHHHh
Confidence 1244 799999888 77653
No 89
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.02 E-value=1.4e-09 Score=92.49 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=57.6
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc-----------------------cccccCccccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP-----------------------GLSGRFMVTAL 59 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~-----------------------~l~~rf~I~~~ 59 (250)
.++++|.|||+||++|+++.|.+.++++. ++.|+.|+.++++ .++..|+|.++
T Consensus 68 gk~vvv~FwatwC~~C~~e~p~l~~l~~~----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 68 GKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHc----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 46899999999999999999999998652 4777777754322 24457899999
Q ss_pred Cceee---cCEeeeeeeeeeccccChHHH
Q psy9732 60 PTIFQ---EGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 60 PT~i~---~Gk~~~~~~~y~~G~~s~~~l 85 (250)
|+.++ +|+. +....|..+.+.+
T Consensus 144 P~t~vid~~G~i----~~~~~G~~~~~~l 168 (185)
T PRK15412 144 PETFLIDGNGII----RYRHAGDLNPRVW 168 (185)
T ss_pred CeEEEECCCceE----EEEEecCCCHHHH
Confidence 96555 8877 4443898888877
No 90
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.01 E-value=1.8e-09 Score=90.79 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=60.2
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEC-----------------------cCCccccccCccccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDV-----------------------TVSPGLSGRFMVTAL 59 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~-----------------------d~~~~l~~rf~I~~~ 59 (250)
.++++|.||++||++|+++.|.++++++. ++.++.|+. +.+..++++|++.++
T Consensus 63 gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 63 GKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 56899999999999999999999988753 355555553 333466778999999
Q ss_pred Cceee---cCEeeeeeeeeeccccChHHH--Hhhhh
Q psy9732 60 PTIFQ---EGIRGNIERGYFNIAKEIEEL--FRVEH 90 (250)
Q Consensus 60 PT~i~---~Gk~~~~~~~y~~G~~s~~~l--fI~~~ 90 (250)
|+.++ +|+. +....|..+.+++ .+.+.
T Consensus 139 P~~~~id~~G~i----~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 139 PETFLVDGNGVI----LYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CeEEEEcCCceE----EEEEeccCCHHHHHHHHHHH
Confidence 96555 7887 4433788888887 66554
No 91
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.01 E-value=7.5e-10 Score=89.14 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=53.8
Q ss_pred CCcEEEEEECCCCHHHHHHHHH-H--HHHHHHhCCCCeEEEEEECcCCcccccc--------CcccccCceee---cCEe
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKV-W--QEYSGWAQDLNINVAQVDVTVSPGLSGR--------FMVTALPTIFQ---EGIR 68 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~-~--e~la~~~k~~~v~va~VD~d~~~~l~~r--------f~I~~~PT~i~---~Gk~ 68 (250)
++++||+|||+||+.|+.|.+. | .++++.+. .++.+++||.++.++++++ |++.++||+++ +|+.
T Consensus 15 ~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~ 93 (124)
T cd02955 15 DKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKP 93 (124)
T ss_pred CCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCE
Confidence 6899999999999999999873 4 35666663 3699999999998877653 58999999999 7877
No 92
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.94 E-value=3.1e-09 Score=83.28 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=56.9
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEE---------------------CcCCccccccCcccccCc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVD---------------------VTVSPGLSGRFMVTALPT 61 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD---------------------~d~~~~l~~rf~I~~~PT 61 (250)
.++++|.||++||++|+.+.|.+.++++.+. +..+.+| .+.+..++++|+|.++|+
T Consensus 20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 96 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFTSPTVNQLAADYP---VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA 96 (123)
T ss_pred CCEEEEEEECCcChhhhhhChHHHHHHhhCC---EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence 4689999999999999999999999987742 2222222 234567999999999999
Q ss_pred eee---cCEeeeeeeeeeccccChHHH
Q psy9732 62 IFQ---EGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 62 ~i~---~Gk~~~~~~~y~~G~~s~~~l 85 (250)
+++ +| . ...+ .|..+.+.|
T Consensus 97 ~~vid~~g-i---~~~~-~g~~~~~~~ 118 (123)
T cd03011 97 IVIVDPGG-I---VFVT-TGVTSEWGL 118 (123)
T ss_pred EEEEcCCC-e---EEEE-eccCCHHHH
Confidence 998 55 4 2444 888887776
No 93
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.89 E-value=5.4e-09 Score=83.03 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=54.4
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc---------------------------CCccccccCc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT---------------------------VSPGLSGRFM 55 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d---------------------------~~~~l~~rf~ 55 (250)
.++++|.|||+||++|++..|.++++.+.+++.++.++.|+.+ ....+++.|+
T Consensus 23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~ 102 (126)
T cd03012 23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYG 102 (126)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhC
Confidence 4689999999999999999999999999998767888887542 1124567789
Q ss_pred ccccCceee---cCEe
Q psy9732 56 VTALPTIFQ---EGIR 68 (250)
Q Consensus 56 I~~~PT~i~---~Gk~ 68 (250)
+.++|+.++ +|+.
T Consensus 103 v~~~P~~~vid~~G~v 118 (126)
T cd03012 103 NQYWPALYLIDPTGNV 118 (126)
T ss_pred CCcCCeEEEECCCCcE
Confidence 999999888 6776
No 94
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.89 E-value=4.8e-09 Score=110.30 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=64.6
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEC---------------------------cCCccccccCc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDV---------------------------TVSPGLSGRFM 55 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~---------------------------d~~~~l~~rf~ 55 (250)
.++++|+|||+||++|++..|.++++++++++.++.|+.|.. +.+..+.++|+
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~ 499 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELG 499 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcC
Confidence 578999999999999999999999999999866688777742 12335678999
Q ss_pred ccccCceee---cCEeeeeeeeeeccccChHHH
Q psy9732 56 VTALPTIFQ---EGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 56 I~~~PT~i~---~Gk~~~~~~~y~~G~~s~~~l 85 (250)
|.++||+++ +|+. .....|....+.|
T Consensus 500 V~~iPt~ilid~~G~i----v~~~~G~~~~~~l 528 (1057)
T PLN02919 500 VSSWPTFAVVSPNGKL----IAQLSGEGHRKDL 528 (1057)
T ss_pred CCccceEEEECCCCeE----EEEEecccCHHHH
Confidence 999999998 7887 4444888887776
No 95
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.85 E-value=2.3e-09 Score=82.93 Aligned_cols=39 Identities=23% Similarity=0.434 Sum_probs=33.1
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEE
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQV 42 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~V 42 (250)
.++++|.||++||++|+++.|.++++++.+++ ++.++.+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v 59 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLA 59 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEE
Confidence 47899999999999999999999999988754 4665555
No 96
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.85 E-value=1e-08 Score=82.89 Aligned_cols=76 Identities=24% Similarity=0.355 Sum_probs=60.4
Q ss_pred CCCcEEEEEECC-CCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCC---------------------ccccccCccc--
Q psy9732 2 LQGEWMVEFFAP-WCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS---------------------PGLSGRFMVT-- 57 (250)
Q Consensus 2 ~~g~~lV~FYAp-WC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~---------------------~~l~~rf~I~-- 57 (250)
..++++|.||++ |||+|+...|.+.++++.+++.++.++.|..+.+ ..++++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 357889999999 9999999999999999997766788877764433 3788899988
Q ss_pred -------ccCceee---cCEeeeeeeeeeccccC
Q psy9732 58 -------ALPTIFQ---EGIRGNIERGYFNIAKE 81 (250)
Q Consensus 58 -------~~PT~i~---~Gk~~~~~~~y~~G~~s 81 (250)
++|++++ +|++ +....|..+
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V----~~~~~g~~~ 136 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKV----VYRHVGPDP 136 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBE----EEEEESSBT
T ss_pred cccccCCeecEEEEEECCCEE----EEEEeCCCC
Confidence 9999877 9988 444355544
No 97
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.76 E-value=3.7e-08 Score=84.20 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=58.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCC-------------ccccccCcc--cccCceee---cCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS-------------PGLSGRFMV--TALPTIFQ---EGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~-------------~~l~~rf~I--~~~PT~i~---~Gk~ 68 (250)
+|.||++||++|++..|.+.+++++++ +.|..|+.+.. ..+...|++ .++||.++ +|+.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g---~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i 149 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG---FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLE 149 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC---CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcE
Confidence 788999999999999999999999983 66666666533 125567885 69999988 7765
Q ss_pred eeeeeeeeccccChHHH--Hhhhh
Q psy9732 69 GNIERGYFNIAKEIEEL--FRVEH 90 (250)
Q Consensus 69 ~~~~~~y~~G~~s~~~l--fI~~~ 90 (250)
.+....|..+.++| .+.+.
T Consensus 150 ---~~~~~~G~~~~~~L~~~I~~l 170 (181)
T PRK13728 150 ---ALPLLQGATDAAGFMARMDTV 170 (181)
T ss_pred ---EEEEEECCCCHHHHHHHHHHH
Confidence 12223899998888 45443
No 98
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.68 E-value=6.4e-08 Score=68.21 Aligned_cols=55 Identities=20% Similarity=0.440 Sum_probs=44.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCcc----ccccCcccccCceeecCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPG----LSGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~----l~~rf~I~~~PT~i~~Gk~ 68 (250)
+..|+++||++|+++.+.+++ .++.+..+|++.++. +.+++++.++|+++++|+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~ 60 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKI 60 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEE
Confidence 568999999999999988865 247888999987654 4567999999999997654
No 99
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.67 E-value=4.1e-08 Score=84.86 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=39.1
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT 45 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d 45 (250)
.++++|.|||+||++|++..|.++++.+++++.++.|+.|+++
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 5789999999999999999999999999998767999999863
No 100
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.66 E-value=4.8e-08 Score=72.25 Aligned_cols=65 Identities=29% Similarity=0.674 Sum_probs=57.7
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc-CCccccccCc--ccccCceee--cCEe
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT-VSPGLSGRFM--VTALPTIFQ--EGIR 68 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d-~~~~l~~rf~--I~~~PT~i~--~Gk~ 68 (250)
.+++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. ..+.+...|+ +..+|++++ +|..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 45789999999999999999999999999864 6899999997 7889999999 999999976 6654
No 101
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.65 E-value=9.3e-08 Score=77.65 Aligned_cols=72 Identities=18% Similarity=0.136 Sum_probs=48.7
Q ss_pred CCcEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCeEEEEEECcCC-ccccccCcccccCceee---cCEeeeeeeee
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVW---QEYSGWAQDLNINVAQVDVTVS-PGLSGRFMVTALPTIFQ---EGIRGNIERGY 75 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~---e~la~~~k~~~v~va~VD~d~~-~~l~~rf~I~~~PT~i~---~Gk~~~~~~~y 75 (250)
.+++||.||+.||++|+.|.... .++.+.+. .++.++.++.+.. ..+. ..+ .++||++| +|+. +..
T Consensus 23 ~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~-~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~v----i~~ 95 (130)
T cd02960 23 NKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ-EDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLTV----RAD 95 (130)
T ss_pred CCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH-hCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCCC----ccc
Confidence 68999999999999999999964 34555553 2566667776522 2222 244 68999999 7766 443
Q ss_pred eccccC
Q psy9732 76 FNIAKE 81 (250)
Q Consensus 76 ~~G~~s 81 (250)
..|..+
T Consensus 96 i~Gy~~ 101 (130)
T cd02960 96 ITGRYS 101 (130)
T ss_pred cccccc
Confidence 356544
No 102
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.65 E-value=2.3e-08 Score=74.01 Aligned_cols=60 Identities=30% Similarity=0.485 Sum_probs=46.9
Q ss_pred CCcEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVW---QEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ 64 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~---e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~ 64 (250)
++++||+|+|+||++|+.|...+ .++.+.+. .++..++||.+...... ++...++|++++
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~~~~-~~~~~~~P~~~~ 79 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDEDPNA-QFDRQGYPTFFF 79 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHHHHH-HHHHCSSSEEEE
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCChhH-HhCCccCCEEEE
Confidence 68999999999999999999977 55666453 47999999998765433 333377999987
No 103
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.63 E-value=1.1e-07 Score=77.50 Aligned_cols=79 Identities=23% Similarity=0.171 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeeccccChHHH--Hhh
Q psy9732 13 PWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAKEIEEL--FRV 88 (250)
Q Consensus 13 pWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~s~~~l--fI~ 88 (250)
-.++.+-..+-+++++++++.+.++.+++||+++++.++.+|||.++||+++ +|+. .....|.++.+++ +|+
T Consensus 46 ~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~----v~~i~G~~~k~~l~~~I~ 121 (132)
T PRK11509 46 KRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNY----RGVLNGIHPWAELINLMR 121 (132)
T ss_pred CcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEE----EEEEeCcCCHHHHHHHHH
Confidence 3567888888999999999965569999999999999999999999999998 9998 6555899999998 888
Q ss_pred hhccCCC
Q psy9732 89 EHNFGQS 95 (250)
Q Consensus 89 ~~~~~~~ 95 (250)
+....+.
T Consensus 122 ~~L~~~~ 128 (132)
T PRK11509 122 GLVEPQQ 128 (132)
T ss_pred HHhcCcC
Confidence 8765443
No 104
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.62 E-value=1.3e-07 Score=73.97 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=64.6
Q ss_pred CCcEEEEEECCCCHHHHHHHH-HH--HHHHHHhCCCCeEEEEEECc--CCccccccCcccccCceee----cCEeeeeee
Q psy9732 3 QGEWMVEFFAPWCPACKQMEK-VW--QEYSGWAQDLNINVAQVDVT--VSPGLSGRFMVTALPTIFQ----EGIRGNIER 73 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P-~~--e~la~~~k~~~v~va~VD~d--~~~~l~~rf~I~~~PT~i~----~Gk~~~~~~ 73 (250)
.++++|+|+++||++|+.|.. .| +++.+.+.. +..+.++|.+ +...++..|++.++|++++ +|+. .
T Consensus 17 ~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~----l 91 (114)
T cd02958 17 KKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEV----L 91 (114)
T ss_pred CceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcE----e
Confidence 578999999999999999987 45 456666643 6888889987 4558899999999999999 3555 4
Q ss_pred eeeccccChHHH--Hhhh
Q psy9732 74 GYFNIAKEIEEL--FRVE 89 (250)
Q Consensus 74 ~y~~G~~s~~~l--fI~~ 89 (250)
....|..+.++| .+++
T Consensus 92 ~~~~G~~~~~~f~~~L~~ 109 (114)
T cd02958 92 KVWSGNITPEDLLSQLIE 109 (114)
T ss_pred EEEcCCCCHHHHHHHHHH
Confidence 444899999988 4443
No 105
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.59 E-value=1.3e-07 Score=62.41 Aligned_cols=56 Identities=34% Similarity=0.739 Sum_probs=48.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccc---cCcccccCceee
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSG---RFMVTALPTIFQ 64 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~---rf~I~~~PT~i~ 64 (250)
++.||++||++|+++.+.+.++ +. ...++.+..+|++....... .+++.++|++++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-AL-LNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-Hh-hCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence 5789999999999999999998 33 34579999999998876654 889999999998
No 106
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.55 E-value=2.5e-07 Score=75.98 Aligned_cols=42 Identities=10% Similarity=-0.017 Sum_probs=37.4
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT 45 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d 45 (250)
.++++|.|||+||+ |++..|.++++.+.+++.++.++.|+++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 46899999999999 9999999999999998667989888753
No 107
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.53 E-value=8.8e-08 Score=93.70 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=65.1
Q ss_pred CcEEEEEECCCCHHHHHHHH-HHHHHHHHhCCCCeEEEEEECcCCc----cccccCcccccCceee---cCEeeeeeeee
Q psy9732 4 GEWMVEFFAPWCPACKQMEK-VWQEYSGWAQDLNINVAQVDVTVSP----GLSGRFMVTALPTIFQ---EGIRGNIERGY 75 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P-~~e~la~~~k~~~v~va~VD~d~~~----~l~~rf~I~~~PT~i~---~Gk~~~~~~~y 75 (250)
+|+|++|||+||..||.+++ .+.+.....+-.++...++|.|++. ++-+||++-+.|++++ +|+. +..
T Consensus 475 ~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e---~~~- 550 (569)
T COG4232 475 KPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSE---PEI- 550 (569)
T ss_pred CcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCc---CcC-
Confidence 59999999999999999999 4544444444457999999999754 6778999999999998 5655 233
Q ss_pred eccccChHHH--Hhhhh
Q psy9732 76 FNIAKEIEEL--FRVEH 90 (250)
Q Consensus 76 ~~G~~s~~~l--fI~~~ 90 (250)
..|..+.+.+ ++++.
T Consensus 551 l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 551 LTGFLTADAFLEHLERA 567 (569)
T ss_pred CcceecHHHHHHHHHHh
Confidence 4888888887 66553
No 108
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.52 E-value=4.5e-07 Score=77.50 Aligned_cols=65 Identities=18% Similarity=0.318 Sum_probs=48.1
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEE-------------C-----cCCccccccCcccccCceee
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVD-------------V-----TVSPGLSGRFMVTALPTIFQ 64 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD-------------~-----d~~~~l~~rf~I~~~PT~i~ 64 (250)
.++++|.|||+||++|+++.|.+.++.+.. +.++.++..| . .....++++|++.++|+.++
T Consensus 74 gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~l 152 (189)
T TIGR02661 74 GRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVL 152 (189)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEE
Confidence 467999999999999999999999988765 2234444321 1 01336678999999998776
Q ss_pred ---cCEe
Q psy9732 65 ---EGIR 68 (250)
Q Consensus 65 ---~Gk~ 68 (250)
+|+.
T Consensus 153 ID~~G~I 159 (189)
T TIGR02661 153 LDQDGKI 159 (189)
T ss_pred ECCCCeE
Confidence 7876
No 109
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.51 E-value=3.2e-07 Score=65.74 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=43.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCcccccc-----CcccccCceee-cCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGR-----FMVTALPTIFQ-EGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~r-----f~I~~~PT~i~-~Gk~ 68 (250)
++.||++||++|+++.+.+.++. +.+-.+|+++++..... +++.++|++++ +|..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~ 62 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSF 62 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-------CceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeE
Confidence 67899999999999999887653 44556888877766555 38999999988 7765
No 110
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.47 E-value=5.7e-07 Score=65.85 Aligned_cols=68 Identities=22% Similarity=0.421 Sum_probs=53.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceeecCEeeeeeeeeecc-ccChHHH
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGIRGNIERGYFNI-AKEIEEL 85 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~~Gk~~~~~~~y~~G-~~s~~~l 85 (250)
|.+++++|++|..+...+++++..+ + +.+--+|....+.+ .+|||.++|++++||+. .+ .| ..+.++|
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~-~--i~~ei~~~~~~~~~-~~ygv~~vPalvIng~~-----~~-~G~~p~~~el 71 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL-G--IEVEIIDIEDFEEI-EKYGVMSVPALVINGKV-----VF-VGRVPSKEEL 71 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT-T--EEEEEEETTTHHHH-HHTT-SSSSEEEETTEE-----EE-ESS--HHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc-C--CeEEEEEccCHHHH-HHcCCCCCCEEEECCEE-----EE-EecCCCHHHH
Confidence 4558999999999999999999987 2 77777777666666 99999999999889987 44 68 5556665
No 111
>PLN02412 probable glutathione peroxidase
Probab=98.47 E-value=4.9e-07 Score=75.82 Aligned_cols=43 Identities=7% Similarity=-0.020 Sum_probs=38.9
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT 45 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d 45 (250)
.++++|.|||+||++|++..|.+.++.+.+++.++.|+.|+++
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 4679999999999999999999999999998777999999864
No 112
>KOG0914|consensus
Probab=98.45 E-value=1.2e-07 Score=82.74 Aligned_cols=66 Identities=29% Similarity=0.614 Sum_probs=60.8
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCccc------ccCceee--cCEe
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVT------ALPTIFQ--EGIR 68 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~------~~PT~i~--~Gk~ 68 (250)
+..|+|.|||-|-+.|++..|.|.+++.+|....++|++||+...++.+.+|+|. .+||+++ +|+.
T Consensus 144 ~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 144 RTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKE 217 (265)
T ss_pred ceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchh
Confidence 4569999999999999999999999999998778999999999999999999885 7899988 7776
No 113
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.44 E-value=3.7e-07 Score=78.29 Aligned_cols=76 Identities=7% Similarity=-0.030 Sum_probs=55.7
Q ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEE------EEEECcC-----------------------------
Q psy9732 2 LQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINV------AQVDVTV----------------------------- 46 (250)
Q Consensus 2 ~~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~v------a~VD~d~----------------------------- 46 (250)
..++++|.|||.||++|+...|.++++++. ++.+ ..||.++
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 457899999999999999999999999654 1223 3444332
Q ss_pred CccccccCcccccCce-ee---cCEeeeeeeeeeccccChHHH
Q psy9732 47 SPGLSGRFMVTALPTI-FQ---EGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 47 ~~~l~~rf~I~~~PT~-i~---~Gk~~~~~~~y~~G~~s~~~l 85 (250)
+..++.+|++.++|+. ++ +|+. +....|..+.+++
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk~GkV----v~~~~G~l~~ee~ 172 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDKTGKV----KFVKEGALSDSDI 172 (184)
T ss_pred cchHHHhcCCCCCCceEEEECCCCcE----EEEEeCCCCHHHH
Confidence 2245678999999766 44 8887 5555898888776
No 114
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.42 E-value=6.5e-07 Score=74.65 Aligned_cols=66 Identities=15% Similarity=0.251 Sum_probs=55.2
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCC-----------------------------cccccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS-----------------------------PGLSGR 53 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~-----------------------------~~l~~r 53 (250)
.+++||.||++||+.|.+..+.+.++.+++++.++.++.|..+.. ..+++.
T Consensus 25 ~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 104 (171)
T cd02969 25 GKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKA 104 (171)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHH
Confidence 578999999999999999999999999999766799988877531 145678
Q ss_pred CcccccCceee---cCEe
Q psy9732 54 FMVTALPTIFQ---EGIR 68 (250)
Q Consensus 54 f~I~~~PT~i~---~Gk~ 68 (250)
|+|...|++++ +|+.
T Consensus 105 ~~v~~~P~~~lid~~G~v 122 (171)
T cd02969 105 YGAACTPDFFLFDPDGKL 122 (171)
T ss_pred cCCCcCCcEEEECCCCeE
Confidence 89999998887 7766
No 115
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.42 E-value=8.3e-07 Score=77.79 Aligned_cols=76 Identities=22% Similarity=0.339 Sum_probs=61.2
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc-----------CCccccccCcccccCceee---cC-E
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT-----------VSPGLSGRFMVTALPTIFQ---EG-I 67 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d-----------~~~~l~~rf~I~~~PT~i~---~G-k 67 (250)
++--|+.||.+.|++|+++.|++..+++.+ + +.+..|+.| .+++++++|+|..+|++++ ++ +
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY-G--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh-C--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 455699999999999999999999999998 3 666666665 3468899999999999998 33 4
Q ss_pred eeeeeeeeeccccChHHH
Q psy9732 68 RGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 68 ~~~~~~~y~~G~~s~~~l 85 (250)
. .....|..+.++|
T Consensus 197 ~----~pv~~G~~s~~~L 210 (215)
T PF13728_consen 197 W----YPVSQGFMSLDEL 210 (215)
T ss_pred E----EEEeeecCCHHHH
Confidence 4 3333598888877
No 116
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.42 E-value=8.2e-07 Score=78.95 Aligned_cols=43 Identities=5% Similarity=-0.054 Sum_probs=39.2
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT 45 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d 45 (250)
.++++|.|||+||++|+...|.+.++.+.+++.++.|+.|+++
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 4689999999999999999999999999998767999999874
No 117
>smart00594 UAS UAS domain.
Probab=98.40 E-value=1.1e-06 Score=69.86 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=60.9
Q ss_pred CCcEEEEEECCCCHHHHHHHHH-H--HHHHHHhCCCCeEEEEEECcC--CccccccCcccccCceee---cC--Eeeeee
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKV-W--QEYSGWAQDLNINVAQVDVTV--SPGLSGRFMVTALPTIFQ---EG--IRGNIE 72 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~-~--e~la~~~k~~~v~va~VD~d~--~~~l~~rf~I~~~PT~i~---~G--k~~~~~ 72 (250)
.+.++|+|+++||+.|+.+... | .++.+.+.. ++.+..+|++. ...++.+|+++++|++.+ +| +...+.
T Consensus 27 ~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~ 105 (122)
T smart00594 27 RRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWV 105 (122)
T ss_pred cCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEe
Confidence 4689999999999999999884 4 345666643 68888899864 457899999999999998 44 111122
Q ss_pred eeeeccccChHHH
Q psy9732 73 RGYFNIAKEIEEL 85 (250)
Q Consensus 73 ~~y~~G~~s~~~l 85 (250)
.+. .|..+.++|
T Consensus 106 ~~~-~G~~~~~~l 117 (122)
T smart00594 106 GVV-EGEISPEEL 117 (122)
T ss_pred ccc-cCCCCHHHH
Confidence 344 899988887
No 118
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.40 E-value=9.4e-07 Score=72.54 Aligned_cols=42 Identities=19% Similarity=0.028 Sum_probs=38.1
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEC
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDV 44 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~ 44 (250)
.++++|.|||+||++|++..|.+.++.+.+++.++.|+.|++
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 467899999999999999999999999999876799999886
No 119
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.39 E-value=6.4e-07 Score=65.36 Aligned_cols=59 Identities=22% Similarity=0.387 Sum_probs=46.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc-----cccccCcccccCceeecCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP-----GLSGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~-----~l~~rf~I~~~PT~i~~Gk~ 68 (250)
++.|+++||++|+++.+.++++. .+ ..+.+..||.+.+. .+.+.+++.++|+++++|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEE
Confidence 47899999999999999999987 22 23677888876543 36677899999999888765
No 120
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.36 E-value=1.1e-06 Score=68.51 Aligned_cols=66 Identities=23% Similarity=0.421 Sum_probs=54.5
Q ss_pred CCcEEEEEECC-CCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC---------------------CccccccCccc---
Q psy9732 3 QGEWMVEFFAP-WCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV---------------------SPGLSGRFMVT--- 57 (250)
Q Consensus 3 ~g~~lV~FYAp-WC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~---------------------~~~l~~rf~I~--- 57 (250)
.++++|.||+. ||++|+...+.+.++.++++..++.++.|..+. +..+++.|++.
T Consensus 25 gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 104 (124)
T PF00578_consen 25 GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEK 104 (124)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEETT
T ss_pred CCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcccc
Confidence 56899999999 999999999999999999987679998887543 23667778888
Q ss_pred ---ccCceee---cCEe
Q psy9732 58 ---ALPTIFQ---EGIR 68 (250)
Q Consensus 58 ---~~PT~i~---~Gk~ 68 (250)
.+|++++ +|+.
T Consensus 105 ~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 105 DTLALPAVFLIDPDGKI 121 (124)
T ss_dssp TSEESEEEEEEETTSBE
T ss_pred CCceEeEEEEECCCCEE
Confidence 8888877 6654
No 121
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.30 E-value=1.8e-06 Score=68.88 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=57.3
Q ss_pred CCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC---------------------CccccccCccccc-
Q psy9732 3 QGEWMVEFF-APWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV---------------------SPGLSGRFMVTAL- 59 (250)
Q Consensus 3 ~g~~lV~FY-ApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~---------------------~~~l~~rf~I~~~- 59 (250)
.++++|.|| +.||+.|....|.+.++.+.+++.++.++.|..+. ...+++.|++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 568899999 58999999999999999998876567777776432 2367777888877
Q ss_pred --------Cceee---cCEeeeeeeeeeccccChHHH
Q psy9732 60 --------PTIFQ---EGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 60 --------PT~i~---~Gk~~~~~~~y~~G~~s~~~l 85 (250)
|+.++ +|+. +..+.|.....++
T Consensus 103 ~~~~~~~~p~~~lid~~G~v----~~~~~g~~~~~~~ 135 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKI----VKVWRKVKPKGHA 135 (140)
T ss_pred ccccCCcceeEEEECCCCEE----EEEEecCCccchH
Confidence 77666 6776 3332565544433
No 122
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.20 E-value=5.1e-06 Score=74.73 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=61.5
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCC-----------ccccccCcccccCceee---c-CE
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS-----------PGLSGRFMVTALPTIFQ---E-GI 67 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~-----------~~l~~rf~I~~~PT~i~---~-Gk 67 (250)
+.--|+.||.+.|++|+++.|++..+++.+. +.+..|++|.. .+++++++|..+|++++ + ++
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg---i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG---ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK 226 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence 3445899999999999999999999999983 66777776654 46889999999999998 3 44
Q ss_pred eeeeeeeeeccccChHHH
Q psy9732 68 RGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 68 ~~~~~~~y~~G~~s~~~l 85 (250)
. .....|..+.++|
T Consensus 227 ~----~pv~~G~iS~deL 240 (256)
T TIGR02739 227 M----SPLAYGFISQDEL 240 (256)
T ss_pred E----EEEeeccCCHHHH
Confidence 4 3333599999998
No 123
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.15 E-value=9.2e-06 Score=65.08 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=37.1
Q ss_pred CcEEEEE-ECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc
Q psy9732 4 GEWMVEF-FAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP 48 (250)
Q Consensus 4 g~~lV~F-YApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~ 48 (250)
++++|.| +++||++|+...|.+.++.+.++..++.++.|..+...
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~ 69 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE 69 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH
Confidence 5566665 59999999999999999999997667999999876543
No 124
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.12 E-value=1.1e-05 Score=68.59 Aligned_cols=42 Identities=10% Similarity=-0.023 Sum_probs=35.5
Q ss_pred CcE-EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc
Q psy9732 4 GEW-MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT 45 (250)
Q Consensus 4 g~~-lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d 45 (250)
+++ ++.|||+||++|++.+|.++++.+.+++.++.|+.|+++
T Consensus 41 k~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 41 KKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 344 456799999999999999999999998767999998763
No 125
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.06 E-value=9.4e-06 Score=60.26 Aligned_cols=61 Identities=23% Similarity=0.402 Sum_probs=48.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc----cccccCc--ccccCceeecCEe
Q psy9732 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP----GLSGRFM--VTALPTIFQEGIR 68 (250)
Q Consensus 6 ~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~----~l~~rf~--I~~~PT~i~~Gk~ 68 (250)
-++.|+.+||++|++..+.+++++..+. ++.+..+|+++++ .+....+ +..+|+++++|+.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~ 68 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD--DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKH 68 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc--CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEE
Confidence 3688999999999999999999997753 5788888887653 4544444 5789999888866
No 126
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.03 E-value=1.5e-05 Score=66.72 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=37.0
Q ss_pred CCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc
Q psy9732 3 QGEWMVEFF-APWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT 45 (250)
Q Consensus 3 ~g~~lV~FY-ApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d 45 (250)
.+.++|.|| +.||++|....|.+.++++.+.+.++.++.|.++
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d 72 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD 72 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 457899999 8999999999999999999997667877777654
No 127
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.01 E-value=2.5e-05 Score=66.56 Aligned_cols=66 Identities=20% Similarity=0.171 Sum_probs=50.9
Q ss_pred CCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC-------------------------CccccccCcc
Q psy9732 3 QGEWMVEFF-APWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV-------------------------SPGLSGRFMV 56 (250)
Q Consensus 3 ~g~~lV~FY-ApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~-------------------------~~~l~~rf~I 56 (250)
.++++|.|| +.||++|....|.+.++.+.++..++.++.|.++. ...+++.|++
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 357899999 99999999999999999999875567777776542 2256677887
Q ss_pred c------ccCceee---cCEe
Q psy9732 57 T------ALPTIFQ---EGIR 68 (250)
Q Consensus 57 ~------~~PT~i~---~Gk~ 68 (250)
. ..|+.++ +|+.
T Consensus 111 ~~~~~g~~~p~tfiID~~G~I 131 (187)
T TIGR03137 111 LIEEAGLADRGTFVIDPEGVI 131 (187)
T ss_pred cccCCCceeeEEEEECCCCEE
Confidence 6 3586555 8887
No 128
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.00 E-value=2e-05 Score=70.55 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=58.6
Q ss_pred CcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC--C---------ccccccCcccccCceee----cCEe
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV--S---------PGLSGRFMVTALPTIFQ----EGIR 68 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~--~---------~~l~~rf~I~~~PT~i~----~Gk~ 68 (250)
.--|+.||.+.|++|+++.|++..+++.+. +.+..|++|. . .+.+.+++|..+|++++ .++.
T Consensus 144 ~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg---~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLAQVINDFRDTYG---LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred cceEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 445899999999999999999999999983 5555555543 2 24677999999999998 3455
Q ss_pred eeeeeeeeccccChHHH
Q psy9732 69 GNIERGYFNIAKEIEEL 85 (250)
Q Consensus 69 ~~~~~~y~~G~~s~~~l 85 (250)
.....|..+.++|
T Consensus 221 ----~pv~~G~iS~deL 233 (248)
T PRK13703 221 ----RPLSYGFITQDDL 233 (248)
T ss_pred ----EEEeeccCCHHHH
Confidence 3333599999998
No 129
>KOG2501|consensus
Probab=97.97 E-value=6.4e-06 Score=68.74 Aligned_cols=66 Identities=21% Similarity=0.437 Sum_probs=51.7
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCC--CeEEEEEECcCCc-------------------------cccccCc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDL--NINVAQVDVTVSP-------------------------GLSGRFM 55 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~--~v~va~VD~d~~~-------------------------~l~~rf~ 55 (250)
.+.+.++|-|.||++|+++.|.+.++.+.+++. .+-++=|+.|.+. .++++|+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~ 112 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE 112 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence 466789999999999999999999998887642 2555555544322 7788999
Q ss_pred ccccCceee---cCEe
Q psy9732 56 VTALPTIFQ---EGIR 68 (250)
Q Consensus 56 I~~~PT~i~---~Gk~ 68 (250)
|.++|++.+ +|..
T Consensus 113 v~~iP~l~i~~~dG~~ 128 (157)
T KOG2501|consen 113 VKGIPALVILKPDGTV 128 (157)
T ss_pred cCcCceeEEecCCCCE
Confidence 999999988 8865
No 130
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.97 E-value=2.5e-05 Score=62.95 Aligned_cols=42 Identities=14% Similarity=0.251 Sum_probs=35.8
Q ss_pred CcEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc
Q psy9732 4 GEWMVEFF-APWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT 45 (250)
Q Consensus 4 g~~lV~FY-ApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d 45 (250)
++++|.|| ++||+.|.+..|.+.++.+.+++.++.++.|..+
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 71 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD 71 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC
Confidence 57788888 9999999999999999999997667888877644
No 131
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.97 E-value=2.6e-05 Score=54.64 Aligned_cols=55 Identities=22% Similarity=0.402 Sum_probs=41.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccC----cccccCceeecCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRF----MVTALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf----~I~~~PT~i~~Gk~ 68 (250)
++.|+++||++|+++...+.+. ++.+..+|++.++.....+ ++.++|+++++|+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~ 60 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEH 60 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEE
Confidence 5789999999999998877652 3667777887665444433 68899999885544
No 132
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.96 E-value=2.1e-05 Score=62.80 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=37.5
Q ss_pred CCcEEEEEECCCCHH-HHHHHHHHHHHHHHhCCC---CeEEEEEECcC
Q psy9732 3 QGEWMVEFFAPWCPA-CKQMEKVWQEYSGWAQDL---NINVAQVDVTV 46 (250)
Q Consensus 3 ~g~~lV~FYApWC~~-Ck~l~P~~e~la~~~k~~---~v~va~VD~d~ 46 (250)
.++++|.||++||++ |.+..+.+.++.+.++.. ++.++.|..+.
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 467999999999997 999999999999998753 48888887653
No 133
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.93 E-value=2.8e-05 Score=63.46 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=36.1
Q ss_pred CCcEEEEEECC-CCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc
Q psy9732 3 QGEWMVEFFAP-WCPACKQMEKVWQEYSGWAQDLNINVAQVDVT 45 (250)
Q Consensus 3 ~g~~lV~FYAp-WC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d 45 (250)
.++++|.||+. ||+.|....+.+.++.+.+++.++.++.|..+
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d 73 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD 73 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46899999975 78889999999999999987667888887754
No 134
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.90 E-value=2.8e-05 Score=61.79 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=36.9
Q ss_pred CCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc
Q psy9732 3 QGEWMVEFF-APWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT 45 (250)
Q Consensus 3 ~g~~lV~FY-ApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d 45 (250)
.++++|.|| +.||+.|....|.+.++.++++..++.++.|..+
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d 65 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD 65 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 578999999 7899999999999999999986556888877754
No 135
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.89 E-value=3.5e-05 Score=76.11 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=64.9
Q ss_pred CCcEEE-EEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceeecCEeeeeeeeeeccccC
Q psy9732 3 QGEWMV-EFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGIRGNIERGYFNIAKE 81 (250)
Q Consensus 3 ~g~~lV-~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~~Gk~~~~~~~y~~G~~s 81 (250)
++++-| .|.+++|++|.+....+++++...+ +|..-.||.+..++++.+|+|.++|++++||+. .+ .|..+
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~~~~~~~~~~v~~vP~~~i~~~~-----~~-~G~~~ 546 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSHFPDLKDEYGIMSVPAIVVDDQQ-----VY-FGKKT 546 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECcccHHHHHhCCceecCEEEECCEE-----EE-eeCCC
Confidence 567655 4579999999999999999999864 689999999999999999999999999998876 34 68888
Q ss_pred hHHH
Q psy9732 82 IEEL 85 (250)
Q Consensus 82 ~~~l 85 (250)
.++|
T Consensus 547 ~~~~ 550 (555)
T TIGR03143 547 IEEM 550 (555)
T ss_pred HHHH
Confidence 8776
No 136
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.82 E-value=4.7e-05 Score=61.64 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=48.1
Q ss_pred CcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCcccccc---CcccccCceee---cCEeeeeeeeeec
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGR---FMVTALPTIFQ---EGIRGNIERGYFN 77 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~r---f~I~~~PT~i~---~Gk~~~~~~~y~~ 77 (250)
+.-++.|..+|||.|++..|.+.++++..+ ++.+--+..++++++..+ .|...+||+++ +|+. ... -
T Consensus 42 ~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~----lg~-w 114 (129)
T PF14595_consen 42 PYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKE----LGR-W 114 (129)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--E----EEE-E
T ss_pred CcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCE----eEE-E
Confidence 446788999999999999999999999864 577777777776665554 47889999999 5565 444 4
Q ss_pred cccChHHH
Q psy9732 78 IAKEIEEL 85 (250)
Q Consensus 78 G~~s~~~l 85 (250)
|.|....-
T Consensus 115 gerP~~~~ 122 (129)
T PF14595_consen 115 GERPKEVQ 122 (129)
T ss_dssp ESS-HHHH
T ss_pred cCCCHHHh
Confidence 76665443
No 137
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.80 E-value=9.1e-05 Score=59.27 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=26.2
Q ss_pred CcEEEEEECCCCHHHHHHHHHHHHHHHHhC
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQ 33 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e~la~~~k 33 (250)
.+.++.|+.++||+|+++.|.+.++...+.
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 467899999999999999999999877653
No 138
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.80 E-value=5.1e-05 Score=63.50 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=36.1
Q ss_pred CCcEEEEEECCC-CHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC
Q psy9732 3 QGEWMVEFFAPW-CPACKQMEKVWQEYSGWAQDLNINVAQVDVTV 46 (250)
Q Consensus 3 ~g~~lV~FYApW-C~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~ 46 (250)
.++++|.||+.| |++|.+..|.+.++++.+. ++.++.|..+.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~ 86 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADL 86 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCC
Confidence 457999999999 9999999999999999984 57888877653
No 139
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.80 E-value=7e-05 Score=51.79 Aligned_cols=55 Identities=29% Similarity=0.479 Sum_probs=43.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCcc----ccccCcccccCceeecCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPG----LSGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~----l~~rf~I~~~PT~i~~Gk~ 68 (250)
++.|..+||++|++....+++ .++.+-.+|++..+. +.+..+..++|+++++|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEE
Confidence 578999999999999988854 247888889887753 3333499999999998875
No 140
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.79 E-value=5.3e-05 Score=55.02 Aligned_cols=57 Identities=23% Similarity=0.365 Sum_probs=43.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc-----cccccCcccccCceeecCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP-----GLSGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~-----~l~~rf~I~~~PT~i~~Gk~ 68 (250)
++.|+++|||+|+.+.+.++++.. .+.+..+|.+.+. .+.+..++.++|+++++|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEE
Confidence 578999999999999999998765 3456677766542 34556688999999778765
No 141
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.77 E-value=9.3e-05 Score=59.49 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=35.8
Q ss_pred CCcEEEEEECCC-CHHHHHHHHHHHHHHHHhCCCCeEEEEEECc
Q psy9732 3 QGEWMVEFFAPW-CPACKQMEKVWQEYSGWAQDLNINVAQVDVT 45 (250)
Q Consensus 3 ~g~~lV~FYApW-C~~Ck~l~P~~e~la~~~k~~~v~va~VD~d 45 (250)
.++++|.||+.| |++|++..|.+.++.++++ ++.++.|+.+
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d 67 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISAD 67 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECC
Confidence 568999999999 6999999999999999985 5888888775
No 142
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.77 E-value=2.8e-05 Score=65.45 Aligned_cols=65 Identities=18% Similarity=0.338 Sum_probs=46.2
Q ss_pred CCcEEEEEECCCCHHHHHHHH-HH--HHHHHHhCCCCeEEEEEECcCCccccccC--------cccccCceee---cCEe
Q psy9732 3 QGEWMVEFFAPWCPACKQMEK-VW--QEYSGWAQDLNINVAQVDVTVSPGLSGRF--------MVTALPTIFQ---EGIR 68 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P-~~--e~la~~~k~~~v~va~VD~d~~~~l~~rf--------~I~~~PT~i~---~Gk~ 68 (250)
++++||.++++||..|+.|.. .| .++++.+. .++.-++||.++.+++...| +..|+|+.+| +|++
T Consensus 37 ~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN-~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p 115 (163)
T PF03190_consen 37 NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLN-RNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKP 115 (163)
T ss_dssp T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHH-HH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-E
T ss_pred CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHh-CCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCe
Confidence 689999999999999999987 44 34676663 46888999999999998888 7889999998 8877
No 143
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00012 Score=61.28 Aligned_cols=78 Identities=15% Similarity=0.245 Sum_probs=61.6
Q ss_pred CCcEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCeEEEEEECcCC----------------ccccccCcccccCcee
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVW---QEYSGWAQDLNINVAQVDVTVS----------------PGLSGRFMVTALPTIF 63 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~---e~la~~~k~~~v~va~VD~d~~----------------~~l~~rf~I~~~PT~i 63 (250)
++-.+++|-++.|+.|-+|.... .++.+.++. ++.+..++.+.. .+|++.|+|+++|||+
T Consensus 42 ~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfv 120 (182)
T COG2143 42 DKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFV 120 (182)
T ss_pred CcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEE
Confidence 45678999999999999999865 455666653 688888876532 2899999999999999
Q ss_pred e---cCEeeeeeeeeeccccChHHH
Q psy9732 64 Q---EGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 64 ~---~Gk~~~~~~~y~~G~~s~~~l 85 (250)
| .|+. .-+..|..+.+++
T Consensus 121 Ffdk~Gk~----Il~lPGY~ppe~F 141 (182)
T COG2143 121 FFDKTGKT----ILELPGYMPPEQF 141 (182)
T ss_pred EEcCCCCE----EEecCCCCCHHHH
Confidence 9 5555 5566999999998
No 144
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.73 E-value=9.7e-05 Score=72.23 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=67.6
Q ss_pred CCcE-EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceeecCEeeeeeeeeeccccC
Q psy9732 3 QGEW-MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGIRGNIERGYFNIAKE 81 (250)
Q Consensus 3 ~g~~-lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~~Gk~~~~~~~y~~G~~s 81 (250)
++++ +-.|+++.||+|.+....+++++...+ +|..-.||..++++++.+|+|.++|+++++|+. .+ .|..+
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~-----~~-~g~~~ 186 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDGALFQDEVEARNIMAVPTVFLNGEE-----FG-QGRMT 186 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEchhCHhHHHhcCCcccCEEEECCcE-----EE-ecCCC
Confidence 3444 888999999999999999999998754 699999999999999999999999999997765 35 78888
Q ss_pred hHHH--Hhhh
Q psy9732 82 IEEL--FRVE 89 (250)
Q Consensus 82 ~~~l--fI~~ 89 (250)
.++| .+.+
T Consensus 187 ~~~~~~~~~~ 196 (517)
T PRK15317 187 LEEILAKLDT 196 (517)
T ss_pred HHHHHHHHhc
Confidence 8888 5544
No 145
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.64 E-value=0.00024 Score=60.96 Aligned_cols=83 Identities=20% Similarity=0.205 Sum_probs=58.1
Q ss_pred CCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC-------------------------CccccccCcc
Q psy9732 3 QGEWMVEFF-APWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV-------------------------SPGLSGRFMV 56 (250)
Q Consensus 3 ~g~~lV~FY-ApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~-------------------------~~~l~~rf~I 56 (250)
.+++++.|| +.||+.|....+.+.++.++++..++.++.|..+. +..++++|++
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 357889999 99999999999999999999976677787777543 2266778887
Q ss_pred ----ccc--Cceee---cCEeeeeeeeeeccccChHHH
Q psy9732 57 ----TAL--PTIFQ---EGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 57 ----~~~--PT~i~---~Gk~~~~~~~y~~G~~s~~~l 85 (250)
.++ |+.++ +|++....+.-....++.+++
T Consensus 111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~ei 148 (187)
T PRK10382 111 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDL 148 (187)
T ss_pred CcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHH
Confidence 355 87776 787711111101233567766
No 146
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.63 E-value=0.0001 Score=55.15 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=45.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc----cccccCc--ccccCceeecCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP----GLSGRFM--VTALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~----~l~~rf~--I~~~PT~i~~Gk~ 68 (250)
++.|..+|||+|+++...++++..... ++.+..+|++.+. .+....+ +..+|+++++|+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~ 67 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKH 67 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEE
Confidence 678999999999999999998876543 4677778876432 4555555 3799999888765
No 147
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.63 E-value=0.00012 Score=50.84 Aligned_cols=55 Identities=24% Similarity=0.419 Sum_probs=42.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccc----cccCcccccCceeecCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGL----SGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l----~~rf~I~~~PT~i~~Gk~ 68 (250)
++.|+++||++|+++.+.+.+.. +.+..+|++.++.. .+..+...+|+++++|+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~ 60 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-------IEFEEIDILEDGELREELKELSGWPTVPQIFINGEF 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEE
Confidence 56889999999999999888653 56778888776543 334577889988777765
No 148
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.63 E-value=0.00019 Score=64.93 Aligned_cols=61 Identities=20% Similarity=0.332 Sum_probs=52.3
Q ss_pred cEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEe
Q psy9732 5 EWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIR 68 (250)
Q Consensus 5 ~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~ 68 (250)
.++|.||-+.++.|+.|...+..||..|. .+.|++|.....+ +..+|.+..+||+++ +|..
T Consensus 148 ~VVVHiY~~~~~~C~~mn~~L~~LA~kyp--~vKFvkI~a~~~~-~~~~f~~~~LPtllvYk~G~l 210 (265)
T PF02114_consen 148 WVVVHIYEPGFPRCEIMNSCLECLARKYP--EVKFVKIRASKCP-ASENFPDKNLPTLLVYKNGDL 210 (265)
T ss_dssp EEEEEEE-TTSCCHHHHHHHHHHHHHH-T--TSEEEEEEECGCC-TTTTS-TTC-SEEEEEETTEE
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEEEehhccC-cccCCcccCCCEEEEEECCEE
Confidence 47999999999999999999999999996 5999999998766 788999999999998 8877
No 149
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.62 E-value=0.00016 Score=62.60 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=54.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC---------------------------CccccccCccc---
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV---------------------------SPGLSGRFMVT--- 57 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~---------------------------~~~l~~rf~I~--- 57 (250)
+.|++.||+.|....+.+.++.++++..++.++.|.++. +..+++.||+.
T Consensus 33 ~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~ 112 (202)
T PRK13190 33 FSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDEN 112 (202)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCcccc
Confidence 358999999999999999999999876667777776542 12566777874
Q ss_pred ---ccCceee---cCEeeeeeeeeeccccChHHH
Q psy9732 58 ---ALPTIFQ---EGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 58 ---~~PT~i~---~Gk~~~~~~~y~~G~~s~~~l 85 (250)
.+|+.++ +|+.......-..+.|+.+++
T Consensus 113 ~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~el 146 (202)
T PRK13190 113 SGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEI 146 (202)
T ss_pred CCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHH
Confidence 5788877 887711110001345788877
No 150
>PRK15000 peroxidase; Provisional
Probab=97.60 E-value=0.00025 Score=61.38 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=57.7
Q ss_pred CCcEEEEEEC-CCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC----------------------------Ccccccc
Q psy9732 3 QGEWMVEFFA-PWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV----------------------------SPGLSGR 53 (250)
Q Consensus 3 ~g~~lV~FYA-pWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~----------------------------~~~l~~r 53 (250)
.+.++|.||+ .||+.|....+.+.+++++++..++.++.|.++. +..+++.
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ 113 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA 113 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence 4578999999 5999999999999999999986678888777652 1145566
Q ss_pred Cccc------ccCceee---cCEeeeeeeeeeccccChHHH
Q psy9732 54 FMVT------ALPTIFQ---EGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 54 f~I~------~~PT~i~---~Gk~~~~~~~y~~G~~s~~~l 85 (250)
|++. .+|+.++ +|+.......-..-.|+.+++
T Consensus 114 ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~ei 154 (200)
T PRK15000 114 YGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEM 154 (200)
T ss_pred cCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHH
Confidence 7876 6887776 787721111111223566666
No 151
>KOG1672|consensus
Probab=97.58 E-value=0.00019 Score=61.81 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=65.0
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
..-+++.||-|.-..|+-|...++.+|+.+- ...|++||+...|=|+.+++|.-+|++.+ +|+. ..|..|..
T Consensus 84 S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~--eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~----~D~iVGF~ 157 (211)
T KOG1672|consen 84 SEKVVCHFYRPEFFRCKIMDKHLEILAKRHV--ETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKT----VDYVVGFT 157 (211)
T ss_pred CceEEEEEEcCCCcceehHHHHHHHHHHhcc--cceEEEEecccCceeeeeeeeeEeeeEEEEEcCEE----EEEEeeHh
Confidence 4568999999999999999999999999974 58999999999999999999999999998 9998 66656654
Q ss_pred C
Q psy9732 81 E 81 (250)
Q Consensus 81 s 81 (250)
+
T Consensus 158 d 158 (211)
T KOG1672|consen 158 D 158 (211)
T ss_pred h
Confidence 3
No 152
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.58 E-value=0.0002 Score=63.46 Aligned_cols=76 Identities=21% Similarity=0.307 Sum_probs=56.2
Q ss_pred CcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEE----------------------------------------
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVD---------------------------------------- 43 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD---------------------------------------- 43 (250)
+..++.|.-|.||+|+++.+.+.++.+. ++.+.-+.
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 4578999999999999999998876541 23322111
Q ss_pred ----CcCCccccccCcccccCceee-cCEeeeeeeeeeccccChHHH--Hhhhh
Q psy9732 44 ----VTVSPGLSGRFMVTALPTIFQ-EGIRGNIERGYFNIAKEIEEL--FRVEH 90 (250)
Q Consensus 44 ----~d~~~~l~~rf~I~~~PT~i~-~Gk~~~~~~~y~~G~~s~~~l--fI~~~ 90 (250)
+.++..+++++||+++|||++ +|+. . .|..+.+.| ++++.
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv~~~G~~------~-~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIVLSNGTL------V-PGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEEEcCCeE------e-eCCCCHHHHHHHHHHc
Confidence 122338899999999999999 9976 3 798999988 66543
No 153
>KOG3425|consensus
Probab=97.55 E-value=0.00028 Score=56.37 Aligned_cols=64 Identities=27% Similarity=0.440 Sum_probs=50.1
Q ss_pred CcEEEEEEC--------CCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc-------cccccCcc-cccCceee-cC
Q psy9732 4 GEWMVEFFA--------PWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP-------GLSGRFMV-TALPTIFQ-EG 66 (250)
Q Consensus 4 g~~lV~FYA--------pWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~-------~l~~rf~I-~~~PT~i~-~G 66 (250)
+.++|.|++ +|||.|.+..|.+.+.-+... .++.|+.|++-+.+ .+...+++ +++||++- +|
T Consensus 26 ~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 26 KTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred ceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-CceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcC
Confidence 448899986 799999999999999888654 47999999986543 45556666 99999987 54
Q ss_pred Ee
Q psy9732 67 IR 68 (250)
Q Consensus 67 k~ 68 (250)
+.
T Consensus 105 ~~ 106 (128)
T KOG3425|consen 105 QP 106 (128)
T ss_pred cc
Confidence 33
No 154
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.54 E-value=0.00027 Score=61.06 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=34.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc
Q psy9732 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT 45 (250)
Q Consensus 6 ~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d 45 (250)
+|+.|+++||+.|....+.+.++++.++..++.++.|.++
T Consensus 29 vlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D 68 (203)
T cd03016 29 ILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD 68 (203)
T ss_pred EEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 4558999999999999999999999997667888887765
No 155
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.52 E-value=0.00024 Score=56.88 Aligned_cols=61 Identities=21% Similarity=0.410 Sum_probs=42.2
Q ss_pred CCcEEEEEEC-------CCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCC-------ccccc--cCcccccCceee
Q psy9732 3 QGEWMVEFFA-------PWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS-------PGLSG--RFMVTALPTIFQ 64 (250)
Q Consensus 3 ~g~~lV~FYA-------pWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~-------~~l~~--rf~I~~~PT~i~ 64 (250)
.++++|.|++ +|||.|.+..|.+++.-...+. +..++.|.+... ..+-. +++++++||++-
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence 4788999996 5999999999999998777643 688888876421 23333 699999999997
No 156
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.50 E-value=0.00025 Score=60.58 Aligned_cols=70 Identities=26% Similarity=0.339 Sum_probs=49.9
Q ss_pred CcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEE-----------------------------------------
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQV----------------------------------------- 42 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~V----------------------------------------- 42 (250)
+..++.|..|.||+|+++.+.+.+. . .++.+..+
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~~---~--~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKPN---A--DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhhc---c--CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 4688999999999999999988761 1 12222211
Q ss_pred ----ECcCCccccccCcccccCceee-cCEeeeeeeeeeccccChHHH
Q psy9732 43 ----DVTVSPGLSGRFMVTALPTIFQ-EGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 43 ----D~d~~~~l~~rf~I~~~PT~i~-~Gk~~~~~~~y~~G~~s~~~l 85 (250)
+++++..+++++||.++||+++ +|+. . .|..+.+.|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii~~~G~~------~-~G~~~~~~l 193 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIVLADGRV------V-PGAPPAAQL 193 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEEECCCeE------e-cCCCCHHHH
Confidence 1112337888999999999999 8865 3 677777666
No 157
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.44 E-value=0.00089 Score=54.31 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=32.8
Q ss_pred CcEEEEEECCCCHHHHHHHHHHHHHHHHh-CCCCeEEEEEEC
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWA-QDLNINVAQVDV 44 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e~la~~~-k~~~v~va~VD~ 44 (250)
.++++.|+.+.||+|.++.+.+.++.+.+ ..+++.+.-.+.
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 45799999999999999999999988887 334788776653
No 158
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.40 E-value=0.00025 Score=60.79 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=37.6
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT 45 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d 45 (250)
.++++|.|||+||+.|++ .|.++++.+.+++.++.|..+.|.
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 478999999999999975 889999999998777999999885
No 159
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.36 E-value=0.0005 Score=67.24 Aligned_cols=79 Identities=16% Similarity=0.244 Sum_probs=66.7
Q ss_pred CCc-EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceeecCEeeeeeeeeeccccC
Q psy9732 3 QGE-WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGIRGNIERGYFNIAKE 81 (250)
Q Consensus 3 ~g~-~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~~Gk~~~~~~~y~~G~~s 81 (250)
+++ -+-.|+++.||+|.+....+.+++...+ +|..-.||..+.++++.+|+|.++|+++++|+. .+ .|..+
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~-----~~-~g~~~ 187 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDGALFQDEVEALGIQGVPAVFLNGEE-----FH-NGRMD 187 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEchhCHHHHHhcCCcccCEEEECCcE-----EE-ecCCC
Confidence 344 4788999999999999999999998864 688888999999999999999999999997765 34 78888
Q ss_pred hHHH--Hhhh
Q psy9732 82 IEEL--FRVE 89 (250)
Q Consensus 82 ~~~l--fI~~ 89 (250)
.+++ .+.+
T Consensus 188 ~~~~~~~l~~ 197 (515)
T TIGR03140 188 LAELLEKLEE 197 (515)
T ss_pred HHHHHHHHhh
Confidence 8887 4443
No 160
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.34 E-value=0.00047 Score=50.52 Aligned_cols=59 Identities=22% Similarity=0.377 Sum_probs=44.4
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCC---ccccccCcccccCceeecCEe
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS---PGLSGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~---~~l~~rf~I~~~PT~i~~Gk~ 68 (250)
+..-++.|..+||++|++....+++. ++.+-.+|++++ ..+....+...+|.++++|+.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~ 67 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKL 67 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEE
Confidence 44557899999999999999888742 355666777655 344555688999999888765
No 161
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.30 E-value=0.00065 Score=48.49 Aligned_cols=55 Identities=22% Similarity=0.467 Sum_probs=41.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCcccc----ccCccc-ccCceeecCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLS----GRFMVT-ALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~----~rf~I~-~~PT~i~~Gk~ 68 (250)
++.|..+||++|++....+++. ++.+-.+|++.++... ++.+.. ++|+++++|+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~ 61 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVH 61 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEE
Confidence 5678899999999999888752 4667778887765433 334665 89999888766
No 162
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.27 E-value=0.0008 Score=58.94 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=35.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC
Q psy9732 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV 46 (250)
Q Consensus 6 ~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~ 46 (250)
+|+.|++.||+.|....+.+.+++.+++..++.++.|.++.
T Consensus 32 VL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~ 72 (215)
T PRK13599 32 VLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ 72 (215)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 35789999999999999999999999976678888877653
No 163
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.27 E-value=0.00047 Score=50.08 Aligned_cols=55 Identities=20% Similarity=0.488 Sum_probs=40.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccc----cccCcccccCceeecCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGL----SGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l----~~rf~I~~~PT~i~~Gk~ 68 (250)
++.|..+|||+|++....+++. ++.+-.+|++.++.. .+..+..++|+++++|+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~ 59 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVH 59 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEE
Confidence 3678899999999999988753 355666677666533 334477899999888765
No 164
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.25 E-value=0.001 Score=52.78 Aligned_cols=79 Identities=11% Similarity=-0.000 Sum_probs=58.0
Q ss_pred CCcEEEEEECC----CCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC--CccccccCcccccCceee----cCEeeeee
Q psy9732 3 QGEWMVEFFAP----WCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV--SPGLSGRFMVTALPTIFQ----EGIRGNIE 72 (250)
Q Consensus 3 ~g~~lV~FYAp----WC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~--~~~l~~rf~I~~~PT~i~----~Gk~~~~~ 72 (250)
.+..+|+||++ ||..|+.... =+++.+-+. .++.+...|++. ...++..+++.++|++.+ +++. .+.
T Consensus 17 ~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln-~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~-~vv 93 (116)
T cd02991 17 LRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYIN-TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM-TIV 93 (116)
T ss_pred CCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHH-cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce-EEE
Confidence 36789999999 8999976652 134444453 368899999974 457899999999999988 4433 122
Q ss_pred eeeeccccChHHH
Q psy9732 73 RGYFNIAKEIEEL 85 (250)
Q Consensus 73 ~~y~~G~~s~~~l 85 (250)
.+. .|..++++|
T Consensus 94 ~~i-~G~~~~~~l 105 (116)
T cd02991 94 GRL-EGLIQPEDL 105 (116)
T ss_pred EEE-eCCCCHHHH
Confidence 334 899999998
No 165
>PHA03050 glutaredoxin; Provisional
Probab=97.24 E-value=0.00066 Score=53.27 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=42.6
Q ss_pred cEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC---C----ccccccCcccccCceeecCEe
Q psy9732 5 EWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV---S----PGLSGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 5 ~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~---~----~~l~~rf~I~~~PT~i~~Gk~ 68 (250)
.-++.|..+|||+|++....+++..-..+ .+-.+|+++ . ..+.+.-|...+|+++++|+.
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~----~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~ 79 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRG----AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTS 79 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcC----CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEE
Confidence 44788999999999999998887654322 244455543 2 234555677899999888876
No 166
>KOG0911|consensus
Probab=97.23 E-value=0.0001 Score=64.71 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=64.6
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
....++.|||+||..|++|...++.+++.. .++.+++++.++.++++..+.+...|.+.+ .|+. .....|..
T Consensus 17 ~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~----v~~l~~~~ 90 (227)
T KOG0911|consen 17 GKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEK----VDRLSGAD 90 (227)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchh----hhhhhccC
Confidence 456789999999999999999999999998 369999999999999999999999999998 6655 44435555
Q ss_pred ChHHH
Q psy9732 81 EIEEL 85 (250)
Q Consensus 81 s~~~l 85 (250)
.....
T Consensus 91 ~~~~~ 95 (227)
T KOG0911|consen 91 PPFLV 95 (227)
T ss_pred cHHHH
Confidence 54444
No 167
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.22 E-value=0.00089 Score=48.02 Aligned_cols=53 Identities=19% Similarity=0.348 Sum_probs=41.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccC---cccccCceeecCE
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRF---MVTALPTIFQEGI 67 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf---~I~~~PT~i~~Gk 67 (250)
..|..++|++|++....+++ .++.+-.+|+++++.....+ |..++|+++++|.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCC
Confidence 56788999999999988874 24777888888777554444 8889999988654
No 168
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.22 E-value=0.00097 Score=48.54 Aligned_cols=59 Identities=27% Similarity=0.404 Sum_probs=44.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc--CC------------------------------ccccccC
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT--VS------------------------------PGLSGRF 54 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d--~~------------------------------~~l~~rf 54 (250)
++.|+.+.||+|..+.+.++++..... .++.+..+... .. ..++.++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD-GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARAL 79 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC-CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHc
Confidence 468999999999999999999975543 35666655432 21 1456788
Q ss_pred cccccCceeecC
Q psy9732 55 MVTALPTIFQEG 66 (250)
Q Consensus 55 ~I~~~PT~i~~G 66 (250)
|+.++||++++|
T Consensus 80 g~~g~Pt~v~~~ 91 (98)
T cd02972 80 GVTGTPTFVVNG 91 (98)
T ss_pred CCCCCCEEEECC
Confidence 999999999954
No 169
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.22 E-value=0.0015 Score=59.11 Aligned_cols=82 Identities=13% Similarity=0.158 Sum_probs=57.5
Q ss_pred CcEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC----------------------------CccccccC
Q psy9732 4 GEWMVEFF-APWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV----------------------------SPGLSGRF 54 (250)
Q Consensus 4 g~~lV~FY-ApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~----------------------------~~~l~~rf 54 (250)
+.+++.|| +.||+.|....+.+.++.++++..++.++.|.++. +..+++.|
T Consensus 99 k~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakay 178 (261)
T PTZ00137 99 SYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSF 178 (261)
T ss_pred CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHc
Confidence 46777777 89999999999999999999976667777776653 12567788
Q ss_pred ccc-----ccCceee---cCEeeeeeeeeeccccChHHH
Q psy9732 55 MVT-----ALPTIFQ---EGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 55 ~I~-----~~PT~i~---~Gk~~~~~~~y~~G~~s~~~l 85 (250)
|+. ..|+.++ +|+.......-....++.+++
T Consensus 179 Gv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~ei 217 (261)
T PTZ00137 179 GLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDET 217 (261)
T ss_pred CCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHH
Confidence 875 4787777 787722111111344677776
No 170
>PRK13189 peroxiredoxin; Provisional
Probab=97.22 E-value=0.0009 Score=58.82 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=33.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc
Q psy9732 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT 45 (250)
Q Consensus 6 ~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d 45 (250)
+|+.|++.||+.|....+.+.+++++++..++.++.|.++
T Consensus 39 vL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D 78 (222)
T PRK13189 39 VLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID 78 (222)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 3456789999999999999999999997667878777665
No 171
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.21 E-value=0.00096 Score=47.86 Aligned_cols=55 Identities=16% Similarity=0.327 Sum_probs=42.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCcc----ccccCcccccCceeecCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPG----LSGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~----l~~rf~I~~~PT~i~~Gk~ 68 (250)
++.|..+||++|++....+++. ++.+-.+|+++++. +.+..+-..+|+++++|+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~ 61 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-------GLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKL 61 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEE
Confidence 5678899999999999888852 46677888887664 4444566789999887765
No 172
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.21 E-value=0.00067 Score=58.65 Aligned_cols=39 Identities=23% Similarity=0.534 Sum_probs=29.8
Q ss_pred CCcEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCeEEEEE
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVW---QEYSGWAQDLNINVAQV 42 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~---e~la~~~k~~~v~va~V 42 (250)
.++-+|+|+...||||.++.+.+ +.+.+.+.+ ++.+.++
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~ 78 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKY 78 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEe
Confidence 45779999999999999999866 777777753 4444443
No 173
>PF14851 FAM176: FAM176 family
Probab=97.19 E-value=0.00083 Score=56.00 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q psy9732 141 TIFAMVTIMIGALLGLLLVFIIDQIY 166 (250)
Q Consensus 141 ~i~~~~t~~~g~~lgl~~v~~~d~~~ 166 (250)
.++-+..+++||+|.|.++ ++.+-|
T Consensus 23 aLYFv~gVC~GLlLtLcll-V~risc 47 (153)
T PF14851_consen 23 ALYFVSGVCAGLLLTLCLL-VIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHHHHHH-Hhhhee
Confidence 4555566888888887666 556666
No 174
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.13 E-value=0.0011 Score=51.03 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=39.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCcc-------ccccCcccccCceeecCEe
Q psy9732 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPG-------LSGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 6 ~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~-------l~~rf~I~~~PT~i~~Gk~ 68 (250)
=++.|..||||+|+++...+.+. ++.+..+|+++.+. +.+..|...+|.++++|+.
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~-------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~ 71 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTL-------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKL 71 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc-------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEE
Confidence 36789999999999999877754 24445566655432 3334467899999888866
No 175
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.07 E-value=0.0014 Score=54.01 Aligned_cols=37 Identities=19% Similarity=0.454 Sum_probs=30.5
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEE
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVA 40 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va 40 (250)
..+.++.|+.+.||+|+++.+.+..+.+++++ ++.+.
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~ 51 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFE 51 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEE
Confidence 35689999999999999999999999888743 45544
No 176
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.02 E-value=0.0021 Score=56.21 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=33.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT 45 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d 45 (250)
|+.|+++||+.|....+.+.+++++++..++.++.|.++
T Consensus 38 Lff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D 76 (215)
T PRK13191 38 LFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD 76 (215)
T ss_pred EEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 347789999999999999999999997667888887765
No 177
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.97 E-value=0.0025 Score=45.47 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=41.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCcc---ccccCcccccCceeecCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPG---LSGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~---l~~rf~I~~~PT~i~~Gk~ 68 (250)
++.|..+||++|.+....+++. ++.+-.+|++.+.. +....+...+|.++++|+.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~ 60 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGEL 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEE
Confidence 6788999999999998877742 46677777766542 3334588899999778865
No 178
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.88 E-value=0.0056 Score=50.53 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=64.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCccc--ccCceee-c---CEeeeeeeeeeccc
Q psy9732 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVT--ALPTIFQ-E---GIRGNIERGYFNIA 79 (250)
Q Consensus 6 ~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~--~~PT~i~-~---Gk~~~~~~~y~~G~ 79 (250)
+++.|+.........+...+.++|+.+++ ++.|+.+|++..+.+++.+++. .+|++++ + ++. .+.+ .|.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~---~~~~-~~~ 172 (184)
T PF13848_consen 98 VLILFDNKDNESTEAFKKELQDIAKKFKG-KINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGKY---YYLP-EGE 172 (184)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHCTTT-TSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSEE---EE---SSC
T ss_pred EEEEEEcCCchhHHHHHHHHHHHHHhcCC-eEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCcE---EcCC-CCC
Confidence 78888877888899999999999999975 7999999999989999999998 9999998 3 333 1223 788
Q ss_pred cChHHH--Hhh
Q psy9732 80 KEIEEL--FRV 88 (250)
Q Consensus 80 ~s~~~l--fI~ 88 (250)
.+.++| |+.
T Consensus 173 ~~~~~i~~Fl~ 183 (184)
T PF13848_consen 173 ITPESIEKFLN 183 (184)
T ss_dssp GCHHHHHHHHH
T ss_pred CCHHHHHHHhc
Confidence 888888 775
No 179
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.86 E-value=0.0048 Score=45.74 Aligned_cols=54 Identities=11% Similarity=0.274 Sum_probs=41.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCcccc---ccCcccccCceeecCE
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLS---GRFMVTALPTIFQEGI 67 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~---~rf~I~~~PT~i~~Gk 67 (250)
++.|..+||++|++....+++ .++.+-.+|++++++.. ...+...+|++++++.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~ 59 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDL 59 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCE
Confidence 567888999999999888854 24778888998776533 3347789999988543
No 180
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.85 E-value=0.0026 Score=56.99 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=51.4
Q ss_pred CcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEE----------------Cc----------------------
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVD----------------VT---------------------- 45 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD----------------~d---------------------- 45 (250)
+.+++.|.-|.||+|+++.+.+.++.+. +++.+..+- |.
T Consensus 118 k~~I~vFtDp~CpyC~kl~~~l~~~~~~---g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 118 PRIVYVFADPNCPYCKQFWQQARPWVDS---GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHhhc---CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 3578899999999999999887765543 123332211 00
Q ss_pred ------------CCccccccCcccccCceee-c--CEeeeeeeeeeccccChHHH
Q psy9732 46 ------------VSPGLSGRFMVTALPTIFQ-E--GIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 46 ------------~~~~l~~rf~I~~~PT~i~-~--Gk~~~~~~~y~~G~~s~~~l 85 (250)
++..+++++||+++|||++ + |.. ... .|..+.+.|
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~----~~v-~G~~~~~~L 244 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTL----QQV-VGLPDPAQL 244 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE----EEe-cCCCCHHHH
Confidence 1125778899999999999 6 654 344 788888877
No 181
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.75 E-value=0.0054 Score=45.24 Aligned_cols=57 Identities=18% Similarity=0.430 Sum_probs=48.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceeecC
Q psy9732 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEG 66 (250)
Q Consensus 6 ~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~~G 66 (250)
.++.|..|.|+-|..+...++++.... .+.+-.||+++++.+..+|+. .+|.+.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~---~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEF---PFELEEVDIDEDPELFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTS---TCEEEEEETTTTHHHHHHSCT-STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhc---CceEEEEECCCCHHHHHHhcC-CCCEEEEcC
Confidence 368899999999999999998876553 489999999999999999996 799998844
No 182
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.75 E-value=0.0039 Score=53.51 Aligned_cols=43 Identities=12% Similarity=0.141 Sum_probs=36.4
Q ss_pred CCcEEEEEEC-CCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECc
Q psy9732 3 QGEWMVEFFA-PWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT 45 (250)
Q Consensus 3 ~g~~lV~FYA-pWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d 45 (250)
.+.++|.||+ .||++|....+.+.+++++++..++.++.|+++
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d 79 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD 79 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3567889995 889999999999999999998777888888765
No 183
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.74 E-value=0.0035 Score=48.04 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=42.1
Q ss_pred CCcEEEEEE----CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCcc----ccccCcccccCceeecCEe
Q psy9732 3 QGEWMVEFF----APWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPG----LSGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 3 ~g~~lV~FY----ApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~----l~~rf~I~~~PT~i~~Gk~ 68 (250)
..+++|+-. +||||+|++....+.+. ++.+..+|+++++. +.+..|...+|.++++|+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~ 77 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC-------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEF 77 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEE
Confidence 455665554 39999999999888764 35567788876653 3344567799999888876
No 184
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.70 E-value=0.0033 Score=47.26 Aligned_cols=59 Identities=8% Similarity=0.241 Sum_probs=41.6
Q ss_pred CCcEEEEEEC----CCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccc----cccCcccccCceeecCEe
Q psy9732 3 QGEWMVEFFA----PWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGL----SGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 3 ~g~~lV~FYA----pWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l----~~rf~I~~~PT~i~~Gk~ 68 (250)
+.+++|.-.+ |||++|++....+++.. +.+..+|+..++.+ .+.-|-..+|+++++|+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~ 73 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG-------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGEL 73 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC-------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEE
Confidence 4556665443 79999999998887642 56777777666533 344577799999778866
No 185
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0061 Score=45.14 Aligned_cols=55 Identities=22% Similarity=0.448 Sum_probs=40.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc-----cccccC-cccccCceeecCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP-----GLSGRF-MVTALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~-----~l~~rf-~I~~~PT~i~~Gk~ 68 (250)
++.|-.++||+|++....+.+ .++.+..+|++.+. ...++- |...+|+++++|+.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~ 63 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKH 63 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEE
Confidence 567888999999999988773 24667777776554 333444 78999999996654
No 186
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=96.45 E-value=0.013 Score=47.29 Aligned_cols=75 Identities=7% Similarity=0.051 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCccc--ccCceee-cCEeeeeeeeeeccccChHHH--HhhhhccC
Q psy9732 19 KQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVT--ALPTIFQ-EGIRGNIERGYFNIAKEIEEL--FRVEHNFG 93 (250)
Q Consensus 19 k~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~--~~PT~i~-~Gk~~~~~~~y~~G~~s~~~l--fI~~~~~~ 93 (250)
..+...+.++|+.+++..+.|+-+|.+++..+.+.||+. ++|++++ +.+.+ .+....|..+.++| |+.+....
T Consensus 40 ~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~--KY~~~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 40 NKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKM--KFATLKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccC--ccccccCccCHHHHHHHHHHHHcC
Confidence 467789999999998633999999999998899999995 5999998 22210 13423799999999 88877654
Q ss_pred CC
Q psy9732 94 QS 95 (250)
Q Consensus 94 ~~ 95 (250)
..
T Consensus 118 kl 119 (130)
T cd02983 118 RG 119 (130)
T ss_pred Cc
Confidence 44
No 187
>PRK10638 glutaredoxin 3; Provisional
Probab=96.42 E-value=0.0086 Score=44.05 Aligned_cols=55 Identities=15% Similarity=0.333 Sum_probs=40.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc----cccccCcccccCceeecCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP----GLSGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~----~l~~rf~I~~~PT~i~~Gk~ 68 (250)
++.|..+||++|++....+++. ++.+..+|++.++ .+.+..+...+|+++++|+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~ 62 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQH 62 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEE
Confidence 5677789999999999888753 3556677887665 33445577889999778766
No 188
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.42 E-value=0.025 Score=55.95 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=65.6
Q ss_pred CCc-EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee---cCEeeeeeeeeecc
Q psy9732 3 QGE-WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ---EGIRGNIERGYFNI 78 (250)
Q Consensus 3 ~g~-~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~---~Gk~~~~~~~y~~G 78 (250)
+++ .++.|+.+.|..|..+...++++++.. .++.+...|..++..++++|+|...|+|.+ +|+. ..++| .|
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s--~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~--~~i~f-~g 439 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFASLS--EKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNY--TGLKF-HG 439 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHhcC--CcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcc--cceEE-Ee
Confidence 344 577888899999999999999999764 368898899988999999999999999998 3432 22566 78
Q ss_pred ccChHHH--Hhhhh
Q psy9732 79 AKEIEEL--FRVEH 90 (250)
Q Consensus 79 ~~s~~~l--fI~~~ 90 (250)
-..-.+| ||..-
T Consensus 440 ~P~G~Ef~s~i~~i 453 (555)
T TIGR03143 440 VPSGHELNSFILAL 453 (555)
T ss_pred cCccHhHHHHHHHH
Confidence 7777777 66543
No 189
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=96.07 E-value=0.02 Score=53.56 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=58.5
Q ss_pred cEEEEEECCCCHHHHHHHHH-------HHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeee
Q psy9732 5 EWMVEFFAPWCPACKQMEKV-------WQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGY 75 (250)
Q Consensus 5 ~~lV~FYApWC~~Ck~l~P~-------~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y 75 (250)
..+|.||.|- +.-+..+.. ++=.|+.+...+|.|+.||...+..+++++|+...+++++ +|+. +.|
T Consensus 53 ~l~l~yh~p~-~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~~----IEy 127 (383)
T PF01216_consen 53 VLVLYYHEPV-ESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDGEV----IEY 127 (383)
T ss_dssp EEEEEEE--S-TSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--STTEEEEEETTEE----EEE
T ss_pred EEEEEEecCC-ccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccccCcEEEEECCcE----EEe
Confidence 4567777765 333333332 3334556666679999999999999999999999999998 9999 999
Q ss_pred eccccChHHH--HhhhhccCC
Q psy9732 76 FNIAKEIEEL--FRVEHNFGQ 94 (250)
Q Consensus 76 ~~G~~s~~~l--fI~~~~~~~ 94 (250)
.|.++++.| |+-.....+
T Consensus 128 -dG~~saDtLVeFl~dl~edP 147 (383)
T PF01216_consen 128 -DGERSADTLVEFLLDLLEDP 147 (383)
T ss_dssp --S--SHHHHHHHHHHHHSSS
T ss_pred -cCccCHHHHHHHHHHhcccc
Confidence 899999999 887765433
No 190
>PRK10824 glutaredoxin-4; Provisional
Probab=96.01 E-value=0.011 Score=47.16 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=39.6
Q ss_pred CCcEEEEEEC----CCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccc----cccCcccccCceeecCEe
Q psy9732 3 QGEWMVEFFA----PWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGL----SGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 3 ~g~~lV~FYA----pWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l----~~rf~I~~~PT~i~~Gk~ 68 (250)
+.+++|.--+ ||||+|++....+.++. +.+..+|+++++.+ .+.-|-..+|.++++|+.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~ 80 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACG-------ERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGEL 80 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcC-------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEE
Confidence 4556665544 79999999998887753 33444566555433 333366788988888877
No 191
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=95.95 E-value=0.026 Score=44.39 Aligned_cols=71 Identities=13% Similarity=0.019 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccc----cCceee---cCEeeeeeeeeecccc-ChHHH
Q psy9732 14 WCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA----LPTIFQ---EGIRGNIERGYFNIAK-EIEEL 85 (250)
Q Consensus 14 WC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~----~PT~i~---~Gk~~~~~~~y~~G~~-s~~~l 85 (250)
.-..-..+...+.++|+.++++++.|+-+|.++.....+.||+.. +|++.+ +++. +.. .+.. +.++|
T Consensus 29 ~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~K----Y~~-~~~~~t~e~i 103 (111)
T cd03073 29 NPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKK----YVM-EEEFSDVDAL 103 (111)
T ss_pred ChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCc----cCC-CcccCCHHHH
Confidence 335557789999999999983379999999998877889999984 999998 3322 333 6667 88888
Q ss_pred --Hhhh
Q psy9732 86 --FRVE 89 (250)
Q Consensus 86 --fI~~ 89 (250)
|+.+
T Consensus 104 ~~F~~~ 109 (111)
T cd03073 104 EEFLED 109 (111)
T ss_pred HHHHHH
Confidence 7765
No 192
>KOG2603|consensus
Probab=95.83 E-value=0.051 Score=50.15 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=65.3
Q ss_pred EEEEEEC----CCCHHHHHHHHHHHHHHHHhCC-------CCeEEEEEECcCCccccccCcccccCceee----cCEee-
Q psy9732 6 WMVEFFA----PWCPACKQMEKVWQEYSGWAQD-------LNINVAQVDVTVSPGLSGRFMVTALPTIFQ----EGIRG- 69 (250)
Q Consensus 6 ~lV~FYA----pWC~~Ck~l~P~~e~la~~~k~-------~~v~va~VD~d~~~~l~~rf~I~~~PT~i~----~Gk~~- 69 (250)
.+|+|.| ..|.-|+++..+|.-+|..... .++-|..||.++.++.-++++++..|++++ .|+..
T Consensus 63 ~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~P~~~n~~~ 142 (331)
T KOG2603|consen 63 LIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLNLNNVPHLVLFSPAKGNKKR 142 (331)
T ss_pred EEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhcccCCCeEEEeCCCcccccc
Confidence 5777877 5799999999999999988542 136799999999999999999999999998 33331
Q ss_pred -eeeeeeeccccChHHH--HhhhhccCCC
Q psy9732 70 -NIERGYFNIAKEIEEL--FRVEHNFGQS 95 (250)
Q Consensus 70 -~~~~~y~~G~~s~~~l--fI~~~~~~~~ 95 (250)
.....+..| ..++++ |+++.+...+
T Consensus 143 s~~~d~~~~g-~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 143 SDQMDQQDLG-FEAEQIAQFVADRTKVNV 170 (331)
T ss_pred Cccchhhhcc-hhHHHHHHHHHHhhhhee
Confidence 111222123 336777 8887765554
No 193
>KOG3414|consensus
Probab=95.64 E-value=0.056 Score=43.82 Aligned_cols=65 Identities=15% Similarity=0.300 Sum_probs=57.4
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEe
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIR 68 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~ 68 (250)
.+.++|-|--.|-|.|.+|...+.+.++...+ =..++-+|+++-+.+-+-|++...||++| +++-
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn-fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN-FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhh-ceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 56789999999999999999999999999864 26678899999999999999999999987 6655
No 194
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=95.50 E-value=0.062 Score=42.11 Aligned_cols=80 Identities=15% Similarity=0.072 Sum_probs=59.6
Q ss_pred cEEEEEECCCCHHHHHHHHHHHHHHHH---hCCCCeEEEEEECcCCccccccCcccc--cCceee---cC-Eeeeeeeee
Q psy9732 5 EWMVEFFAPWCPACKQMEKVWQEYSGW---AQDLNINVAQVDVTVSPGLSGRFMVTA--LPTIFQ---EG-IRGNIERGY 75 (250)
Q Consensus 5 ~~lV~FYApWC~~Ck~l~P~~e~la~~---~k~~~v~va~VD~d~~~~l~~rf~I~~--~PT~i~---~G-k~~~~~~~y 75 (250)
+..+.|+.+ ..-..+.+.+.++|+. +++ +++|+.+|.+......+.||+.. +|.+.+ ++ .. +.+
T Consensus 18 ~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kg-ki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~K----y~~ 90 (111)
T cd03072 18 PFLILFHDK--DDLESLKEFKQAVARQLISEKG-AINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYL----FPD 90 (111)
T ss_pred CeEEEEecc--hHHHHHHHHHHHHHHHHHhcCc-eEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCc----CCC
Confidence 444556632 2346788899999999 875 79999999999877899999997 999998 22 22 331
Q ss_pred eccccChHHH--Hhhhhc
Q psy9732 76 FNIAKEIEEL--FRVEHN 91 (250)
Q Consensus 76 ~~G~~s~~~l--fI~~~~ 91 (250)
..+..+.++| |+.+..
T Consensus 91 ~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 91 FEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred CccccCHHHHHHHHHHHh
Confidence 3678888888 887643
No 195
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=95.38 E-value=0.067 Score=39.77 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=54.8
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
+.+++|-|+.++|+ .+...|.++|+.+++ .+.|+.+. ++.++..+++.. |++++ .+.. ....| .|..
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~--~~~~y-~g~~ 85 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRD-DYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEE--EPVEY-DGEF 85 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhccc-CCeEEEEC---hHHHHHHcCCCC-CceEEeCCccc--CCccC-CCCC
Confidence 56789999999988 577799999999864 57887766 345666677755 66666 3211 12567 8888
Q ss_pred ChHHH--Hhhh
Q psy9732 81 EIEEL--FRVE 89 (250)
Q Consensus 81 s~~~l--fI~~ 89 (250)
+.++| ||..
T Consensus 86 ~~~~l~~fi~~ 96 (97)
T cd02981 86 TEESLVEFIKD 96 (97)
T ss_pred CHHHHHHHHHh
Confidence 88888 8764
No 196
>KOG1752|consensus
Probab=95.35 E-value=0.057 Score=42.25 Aligned_cols=57 Identities=19% Similarity=0.349 Sum_probs=41.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc-cc----cccCcccccCceeecCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP-GL----SGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~-~l----~~rf~I~~~PT~i~~Gk~ 68 (250)
+|.|-.+||+.|+++...|.+ + +....+..+|-..+. ++ .+--+.+.+|.++++|+.
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~-~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~ 77 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----L-GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKF 77 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----C-CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEE
Confidence 577899999999998888887 2 234567777776543 22 222345699999999987
No 197
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=95.17 E-value=0.05 Score=52.12 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=40.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccc------------cccCcccccCceeecCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGL------------SGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l------------~~rf~I~~~PT~i~~Gk~ 68 (250)
++.|..||||+|++....+.+. ++.+-.||+++.+.. ..+.|...+|+++++|+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~ 70 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVH 70 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEE
Confidence 6789999999999999877763 466777888766521 122477899999886654
No 198
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.89 E-value=0.18 Score=39.59 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=48.9
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc----cccccCccc-ccCceee--cCEe
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP----GLSGRFMVT-ALPTIFQ--EGIR 68 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~----~l~~rf~I~-~~PT~i~--~Gk~ 68 (250)
+++++|+=.++.||-.......|++......+ .+.++-+|+-+.+ .++++|||. .-|.+++ +|+.
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~-~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~ 90 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPD-EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKV 90 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEE
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc-cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEE
Confidence 57888888999999999999999999998864 4999999998765 678899997 7899888 9987
No 199
>PTZ00062 glutaredoxin; Provisional
Probab=94.35 E-value=0.086 Score=45.97 Aligned_cols=59 Identities=10% Similarity=0.205 Sum_probs=40.8
Q ss_pred CCcEEEEEE----CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCcccc----ccCcccccCceeecCEe
Q psy9732 3 QGEWMVEFF----APWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLS----GRFMVTALPTIFQEGIR 68 (250)
Q Consensus 3 ~g~~lV~FY----ApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~----~rf~I~~~PT~i~~Gk~ 68 (250)
..+++|.-- +|+|++|+++...+.+. ++.+..+|+++++.+. +.-+-..+|.++++|+.
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~ 178 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSS-------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGEL 178 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHc-------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEE
Confidence 345555544 38999999998887753 3667778887665432 33355688989888876
No 200
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=94.26 E-value=0.52 Score=38.41 Aligned_cols=64 Identities=16% Similarity=0.311 Sum_probs=53.6
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCc-eee--cCEe
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT-IFQ--EGIR 68 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT-~i~--~Gk~ 68 (250)
++.++|-|-.+|-+.|.+|-..+.+++...++ =..++.||.++-+.+.+-|.+. -|. ++| +++.
T Consensus 20 drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkh 86 (133)
T PF02966_consen 20 DRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKH 86 (133)
T ss_dssp SSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEE
T ss_pred ceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEcccchhhhcccccC-CCeEEEEEecCeE
Confidence 67899999999999999999999999999975 3778999999999999999998 674 444 7766
No 201
>PF14851 FAM176: FAM176 family
Probab=93.90 E-value=0.079 Score=44.26 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhhc
Q psy9732 147 TIMIGALLGLLLVFIIDQ 164 (250)
Q Consensus 147 t~~~g~~lgl~~v~~~d~ 164 (250)
-+++|+.+||+|++++=.
T Consensus 25 YFv~gVC~GLlLtLcllV 42 (153)
T PF14851_consen 25 YFVSGVCAGLLLTLCLLV 42 (153)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355688888888876543
No 202
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=93.69 E-value=0.087 Score=41.44 Aligned_cols=73 Identities=21% Similarity=0.159 Sum_probs=54.4
Q ss_pred EEEEEECCCC---HHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 6 WMVEFFAPWC---PACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 6 ~lV~FYApWC---~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
..|.|.+..| +.+...+=++-++.+.+. +.+..+.|+-..+..|..+|++..+|+++| +|+. .....|.+
T Consensus 28 ~~vlf~~gDp~r~~E~~DvaVILPEL~~af~-~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~----lG~i~gi~ 102 (107)
T PF07449_consen 28 DAVLFFAGDPARFPETADVAVILPELVKAFP-GRFRGAVVARAAERALAARFGVRRWPALVFFRDGRY----LGAIEGIR 102 (107)
T ss_dssp CEEEEESS-TTTSTTCCHHHHHHHHHHCTST-TSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEE----EEEEESSS
T ss_pred cEEEEECCCCCcCcccccceeEcHHHHHhhh-CccceEEECchhHHHHHHHhCCccCCeEEEEECCEE----EEEecCee
Confidence 3455555444 556666668888888885 468888888788899999999999999999 9988 66656766
Q ss_pred ChH
Q psy9732 81 EIE 83 (250)
Q Consensus 81 s~~ 83 (250)
+-+
T Consensus 103 dW~ 105 (107)
T PF07449_consen 103 DWA 105 (107)
T ss_dssp THH
T ss_pred ccc
Confidence 654
No 203
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=93.42 E-value=0.29 Score=39.46 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=53.0
Q ss_pred CcEEEEEECCCCHHHHHHHHHHHHHH-HHhC-CCCeEEEEEECc-----CCccccccCcc--cccCceee--cCEeeeee
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQEYS-GWAQ-DLNINVAQVDVT-----VSPGLSGRFMV--TALPTIFQ--EGIRGNIE 72 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e~la-~~~k-~~~v~va~VD~d-----~~~~l~~rf~I--~~~PT~i~--~Gk~~~~~ 72 (250)
+.++|.|=... |+- .-.-.|.++| +..+ ..++-+|.|-+. +|.+|++||+| ..+|.+++ .|.. .+
T Consensus 22 ~~~LVKFD~ay-PyG-eKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~~~~--~p 97 (126)
T PF07912_consen 22 KYVLVKFDVAY-PYG-EKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVGDKE--EP 97 (126)
T ss_dssp SEEEEEEEESS---C-HHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEESSTT--SE
T ss_pred ceEEEEEeccC-CCc-chHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecCCCC--CC
Confidence 44677775433 111 2244777888 4443 346999999874 46799999999 67999998 3322 12
Q ss_pred eee-eccccChHHH--HhhhhccCCC
Q psy9732 73 RGY-FNIAKEIEEL--FRVEHNFGQS 95 (250)
Q Consensus 73 ~~y-~~G~~s~~~l--fI~~~~~~~~ 95 (250)
..| ..|..+.++| |+.++++...
T Consensus 98 v~~p~~~~~t~~~l~~fvk~~t~~yi 123 (126)
T PF07912_consen 98 VRYPFDGDVTADNLQRFVKSNTGLYI 123 (126)
T ss_dssp EEE-TCS-S-HHHHHHHHHHTSS--T
T ss_pred ccCCccCCccHHHHHHHHHhCCCeee
Confidence 433 2688899999 9998865443
No 204
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=93.14 E-value=0.33 Score=39.80 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee----cCEeeeeeeeeeccc-cChHHH--Hhhhhcc
Q psy9732 20 QMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ----EGIRGNIERGYFNIA-KEIEEL--FRVEHNF 92 (250)
Q Consensus 20 ~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~----~Gk~~~~~~~y~~G~-~s~~~l--fI~~~~~ 92 (250)
.+...|.++|+.+.+ ++.|+.+. ++.+++++++.. |++++ +++. ..| .|. .+.++| ||..+.-
T Consensus 7 ~~~~~f~~~A~~~~~-~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~----~~y-~~~~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKG-DYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKP----VVY-DGDKFTPEELKKFIKKNSF 76 (184)
T ss_dssp HHHHHHHHHHHHHTT-TSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSE----EEE-SSSTTSHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCcC-CcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCc----eec-ccccCCHHHHHHHHHHhcc
Confidence 356689999999975 58998887 666889999999 99998 3445 778 887 789999 9998853
No 205
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=92.49 E-value=0.68 Score=38.19 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=54.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCccc----ccCceeecCEeeeeeeeeeccccC
Q psy9732 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVT----ALPTIFQEGIRGNIERGYFNIAKE 81 (250)
Q Consensus 6 ~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~----~~PT~i~~Gk~~~~~~~y~~G~~s 81 (250)
=++.|++|.|+-|......++. ..+.|-.+..+....+-++++|. +--|.+++|.. . .|...
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~-------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~------v-EGHVP 92 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKA-------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYY------V-EGHVP 92 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHh-------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEE------E-eccCC
Confidence 4788999999999987766552 24777788888877888888875 66677778865 3 79999
Q ss_pred hHHH--Hhhhh
Q psy9732 82 IEEL--FRVEH 90 (250)
Q Consensus 82 ~~~l--fI~~~ 90 (250)
++++ ++.+.
T Consensus 93 a~aI~~ll~~~ 103 (149)
T COG3019 93 AEAIARLLAEK 103 (149)
T ss_pred HHHHHHHHhCC
Confidence 9999 66554
No 206
>KOG2640|consensus
Probab=92.14 E-value=0.033 Score=51.27 Aligned_cols=82 Identities=17% Similarity=0.315 Sum_probs=65.0
Q ss_pred cEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEC-cCCccccccCcccccCceee-cCEeeeeeeeeeccccCh
Q psy9732 5 EWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDV-TVSPGLSGRFMVTALPTIFQ-EGIRGNIERGYFNIAKEI 82 (250)
Q Consensus 5 ~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~-d~~~~l~~rf~I~~~PT~i~-~Gk~~~~~~~y~~G~~s~ 82 (250)
.+-+.||+.|||..+..+|.+.-....+. .+....|+- ...++..+++++.+.|++++ +-.. ...| .|.+..
T Consensus 78 ~vs~~fy~s~C~fsr~~~~~fd~~~sl~~--~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~---~~~~-~~~r~l 151 (319)
T KOG2640|consen 78 YVSLLFYASWCPFSRAVRPEFDVRSSLFS--SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC---PASY-RGERDL 151 (319)
T ss_pred cccccchhcccCcccccCcccchhhhhcc--ccccccHHHHhhcccchhccccccCCcceeecccc---chhh-cccccH
Confidence 45678999999999999999998888875 355544432 35678899999999999999 6555 3566 899999
Q ss_pred HHH--Hhhhhcc
Q psy9732 83 EEL--FRVEHNF 92 (250)
Q Consensus 83 ~~l--fI~~~~~ 92 (250)
.+| |..+..+
T Consensus 152 ~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 152 ASLVNFYTEITP 163 (319)
T ss_pred HHHHHHHHhhcc
Confidence 999 7777664
No 207
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=92.05 E-value=0.15 Score=42.05 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=40.4
Q ss_pred CCcEEEEEE-CCCCHHHHHH-HHHHHHHHHHhCCCCe-EEEEEECcC---CccccccCcc
Q psy9732 3 QGEWMVEFF-APWCPACKQM-EKVWQEYSGWAQDLNI-NVAQVDVTV---SPGLSGRFMV 56 (250)
Q Consensus 3 ~g~~lV~FY-ApWC~~Ck~l-~P~~e~la~~~k~~~v-~va~VD~d~---~~~l~~rf~I 56 (250)
.++++|.|| +.||+.|... .+.|.+..++++..++ .++.|..+. ...+++++++
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 345555555 7999999998 9999999999876667 588888764 3456667766
No 208
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=91.55 E-value=0.71 Score=33.77 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=47.3
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ 64 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~ 64 (250)
..|-+..-+..++....+.++-+.+..+++.+--||+.++|++++.++|-..||++-
T Consensus 5 ~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 5 RLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 344455558888888888888777666689999999999999999999999999875
No 209
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=91.37 E-value=0.47 Score=39.29 Aligned_cols=55 Identities=18% Similarity=0.443 Sum_probs=39.6
Q ss_pred EEEEECC------CCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCcc----ccccCcc----cccCceeecCEe
Q psy9732 7 MVEFFAP------WCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPG----LSGRFMV----TALPTIFQEGIR 68 (250)
Q Consensus 7 lV~FYAp------WC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~----l~~rf~I----~~~PT~i~~Gk~ 68 (250)
+|.|.++ +|++|+++...++.+ +|.+-.+|++.++. |.+..+- ..+|.++++|+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~ 70 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRY 70 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEE
Confidence 4556666 899999999888753 47788888876653 3344443 689999998765
No 210
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=1.3 Score=38.56 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=21.4
Q ss_pred cccccCcccccCceeecCEeeeeeeeeeccccChHHH
Q psy9732 49 GLSGRFMVTALPTIFQEGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 49 ~l~~rf~I~~~PT~i~~Gk~~~~~~~y~~G~~s~~~l 85 (250)
.++..+||.+.||++++|+. + .|..+.++|
T Consensus 206 ~~a~~~gv~gTPt~~v~~~~------~-~g~~~~~~l 235 (244)
T COG1651 206 KLAQQLGVNGTPTFIVNGKL------V-PGLPDLDEL 235 (244)
T ss_pred HHHHhcCCCcCCeEEECCee------e-cCCCCHHHH
Confidence 56677889999999994432 2 666767776
No 211
>PF15050 SCIMP: SCIMP protein
Probab=90.28 E-value=0.26 Score=39.50 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q psy9732 141 TIFAMVTIMIGALLGLLLVFIIDQIY 166 (250)
Q Consensus 141 ~i~~~~t~~~g~~lgl~~v~~~d~~~ 166 (250)
.|+|+|.+++++.|||+|-|++.+.+
T Consensus 10 iiLAVaII~vS~~lglIlyCvcR~~l 35 (133)
T PF15050_consen 10 IILAVAIILVSVVLGLILYCVCRWQL 35 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999988766
No 212
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=90.26 E-value=0.5 Score=37.13 Aligned_cols=34 Identities=6% Similarity=0.063 Sum_probs=27.0
Q ss_pred eeehhhhHHHHHH---hhhccceeeEeecCCcchhHHHH
Q psy9732 108 IQCNVLMLISEIQ---NKKMHNKMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 108 ~~~~~~~~~F~~~---~~~~~~~l~~~yg~a~W~~~~i~ 143 (250)
.++.+....|+.. ++....+++.|| ++||++|..
T Consensus 10 ~v~~l~~~~f~~~~~v~~~~~~vlV~Fy--A~WC~~Ck~ 46 (113)
T cd03006 10 PVLDFYKGQLDYAEELRTDAEVSLVMYY--APWDAQSQA 46 (113)
T ss_pred CeEEechhhhHHHHhcccCCCEEEEEEE--CCCCHHHHH
Confidence 3557777777744 577888999999 999999983
No 213
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=89.72 E-value=1.2 Score=31.24 Aligned_cols=56 Identities=9% Similarity=0.189 Sum_probs=37.6
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC-CccccccCcccccCceee-cCEe
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV-SPGLSGRFMVTALPTIFQ-EGIR 68 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~-~~~l~~rf~I~~~PT~i~-~Gk~ 68 (250)
+.|+++||++|++..-.+++.. ..+.+..+|... .+.+.+......+|++.. +|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~g-----l~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAG-----ITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcC-----CCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcE
Confidence 4577899999999876665543 335556666543 234555556779999988 6754
No 214
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=88.75 E-value=1.3 Score=34.77 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=56.8
Q ss_pred cEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC--CccccccCccc----ccCceee---cCEeeeeeeee
Q psy9732 5 EWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV--SPGLSGRFMVT----ALPTIFQ---EGIRGNIERGY 75 (250)
Q Consensus 5 ~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~--~~~l~~rf~I~----~~PT~i~---~Gk~~~~~~~y 75 (250)
.+||.|..+-=.. ......+.++|+..++ .-.++-|||.. ...||+++.|. --|..+. +|.+ ...|
T Consensus 21 NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG-~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~f---HkdY 95 (112)
T cd03067 21 NVLVLYSKSAKSA-EALLKLLSDVAQAVKG-QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKDGDF---HTEY 95 (112)
T ss_pred cEEEEEecchhhH-HHHHHHHHHHHHHhcC-ceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccCCCc---cccc
Confidence 4666666554443 4445589999999875 56899999975 67999999998 5665543 9988 3566
Q ss_pred eccccChHHH--Hhhh
Q psy9732 76 FNIAKEIEEL--FRVE 89 (250)
Q Consensus 76 ~~G~~s~~~l--fI~~ 89 (250)
.-..+..+| |+..
T Consensus 96 -dR~~t~kSmv~FlrD 110 (112)
T cd03067 96 -NRQLTFKSMVAFLRD 110 (112)
T ss_pred -cchhhHHHHHHHhhC
Confidence 667777777 7754
No 215
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=87.98 E-value=1.9 Score=28.49 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=36.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCcc--ccccCcccccCceeecCEe
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPG--LSGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~--l~~rf~I~~~PT~i~~Gk~ 68 (250)
..|+.++|+.|++..-.++...- .+.+..++...... +-...+-..+|++..+|..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i-----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~ 59 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL-----PYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLV 59 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC-----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEE
Confidence 46788999999998877665532 34455555433322 3445567789988886544
No 216
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=87.17 E-value=0.93 Score=34.36 Aligned_cols=31 Identities=6% Similarity=0.094 Sum_probs=24.9
Q ss_pred hhhhHHHHHHhhhccceeeEeecCCcchhHHHH
Q psy9732 111 NVLMLISEIQNKKMHNKMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 111 ~~~~~~F~~~~~~~~~~l~~~yg~a~W~~~~i~ 143 (250)
.+....|+..++....+++.|| ++||.+|.-
T Consensus 5 ~l~~~~f~~~i~~~~~vlv~F~--a~wC~~C~~ 35 (108)
T cd02996 5 SLTSGNIDDILQSAELVLVNFY--ADWCRFSQM 35 (108)
T ss_pred EcCHhhHHHHHhcCCEEEEEEE--CCCCHHHHh
Confidence 4456678877777778999999 999999983
No 217
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=87.06 E-value=0.81 Score=34.25 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=46.8
Q ss_pred EECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee
Q psy9732 10 FFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ 64 (250)
Q Consensus 10 FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~ 64 (250)
|-+..-+..++.......+.+..-..++.+--||+.++|.+++.++|-..||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 4445556778888888888888666789999999999999999999999999986
No 218
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=86.06 E-value=3.2 Score=31.45 Aligned_cols=72 Identities=15% Similarity=0.013 Sum_probs=54.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee-cCEeeeeeeeeeccccC
Q psy9732 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ-EGIRGNIERGYFNIAKE 81 (250)
Q Consensus 6 ~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~-~Gk~~~~~~~y~~G~~s 81 (250)
++=.|.|..-+.+++....+.++-+.+-.+.+.+--||+.++|++++.++|-+.||++- .-.+ .++. .|..+
T Consensus 5 ~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P---~rri-iGdls 77 (87)
T TIGR02654 5 VLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPPP---VRKI-IGDLS 77 (87)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCC---ccee-ecccc
Confidence 34456677778888888888888776555568899999999999999999999999876 3323 0333 67655
No 219
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=85.85 E-value=1.2 Score=33.31 Aligned_cols=30 Identities=7% Similarity=-0.236 Sum_probs=24.0
Q ss_pred hhhhHHHHHHhhhccceeeEeecCCcchhHHH
Q psy9732 111 NVLMLISEIQNKKMHNKMMEDYGIPAWGSYTI 142 (250)
Q Consensus 111 ~~~~~~F~~~~~~~~~~l~~~yg~a~W~~~~i 142 (250)
.+....|+..+.....+++.|| ++||++|.
T Consensus 5 ~l~~~~f~~~v~~~~~~~v~f~--a~wC~~C~ 34 (101)
T cd03003 5 TLDRGDFDAAVNSGEIWFVNFY--SPRCSHCH 34 (101)
T ss_pred EcCHhhHHHHhcCCCeEEEEEE--CCCChHHH
Confidence 3455667877766678999999 99999988
No 220
>PRK09301 circadian clock protein KaiB; Provisional
Probab=85.56 E-value=3.2 Score=32.47 Aligned_cols=73 Identities=14% Similarity=-0.023 Sum_probs=55.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee-cCEeeeeeeeeeccccCh
Q psy9732 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ-EGIRGNIERGYFNIAKEI 82 (250)
Q Consensus 6 ~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~-~Gk~~~~~~~y~~G~~s~ 82 (250)
++=.|.|..-+..++....+.++-+.+-.+.+.+--||+.++|.+++.++|-+.||++- .-.+ ++...|..+.
T Consensus 8 ~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P----~rriiGDlsd 81 (103)
T PRK09301 8 ILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPPP----VRKIIGDLSD 81 (103)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCC----cceeeccccc
Confidence 45566788888888888888888776555568899999999999999999999999876 3333 3333677653
No 221
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=84.97 E-value=0.88 Score=38.43 Aligned_cols=13 Identities=31% Similarity=0.271 Sum_probs=5.7
Q ss_pred cCCCCCCCCCCcc
Q psy9732 182 KGKDLGAKDSDVE 194 (250)
Q Consensus 182 ~~~~~~~~~~~~~ 194 (250)
|+--.+..+...|
T Consensus 128 kYgvl~~~~~~~E 140 (163)
T PF06679_consen 128 KYGVLTTRAENVE 140 (163)
T ss_pred eecccCCCcccce
Confidence 4443455533345
No 222
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=84.93 E-value=2.6 Score=29.02 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=36.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC----CccccccCcccccCceee-cCEe
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV----SPGLSGRFMVTALPTIFQ-EGIR 68 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~----~~~l~~rf~I~~~PT~i~-~Gk~ 68 (250)
..|+.++|+.|++..-.+....- .+....+|... .+.+.+...-..+|++.. +|..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l-----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~ 62 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI-----DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTV 62 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC-----CceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCE
Confidence 46778999999999877665532 34445555422 233444555668999988 6643
No 223
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=84.74 E-value=1.1 Score=39.57 Aligned_cols=14 Identities=14% Similarity=0.036 Sum_probs=7.9
Q ss_pred ccccChHHH--Hhhhh
Q psy9732 77 NIAKEIEEL--FRVEH 90 (250)
Q Consensus 77 ~G~~s~~~l--fI~~~ 90 (250)
-...+..+| ++.+.
T Consensus 102 Ln~VdE~DLl~l~e~~ 117 (218)
T PF14283_consen 102 LNQVDEADLLALMEEE 117 (218)
T ss_pred eccCCHHHHHHHHhcc
Confidence 455666666 66544
No 224
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=84.18 E-value=0.9 Score=36.16 Aligned_cols=31 Identities=6% Similarity=-0.032 Sum_probs=25.8
Q ss_pred ehhhhHHHHHHhhhccceeeEeecCC--cchh---HHH
Q psy9732 110 CNVLMLISEIQNKKMHNKMMEDYGIP--AWGS---YTI 142 (250)
Q Consensus 110 ~~~~~~~F~~~~~~~~~~l~~~yg~a--~W~~---~~i 142 (250)
..+....|+.+++....+|++|| + |||+ +|-
T Consensus 4 v~L~~~nF~~~v~~~~~vlV~F~--A~~Pwc~k~~~~~ 39 (116)
T cd03007 4 VDLDTVTFYKVIPKFKYSLVKFD--TAYPYGEKHEAFT 39 (116)
T ss_pred eECChhhHHHHHhcCCcEEEEEe--CCCCCCCChHHHH
Confidence 35667789989988899999999 8 9999 655
No 225
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=83.42 E-value=1.7 Score=32.29 Aligned_cols=30 Identities=13% Similarity=0.065 Sum_probs=22.3
Q ss_pred ehhhhHHHHHHhhhccceeeEeecCCcchhHHHH
Q psy9732 110 CNVLMLISEIQNKKMHNKMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 110 ~~~~~~~F~~~~~~~~~~l~~~yg~a~W~~~~i~ 143 (250)
..+....|+..++. .+++.|| ++||.+|.-
T Consensus 4 ~~l~~~~f~~~~~~--~~lv~f~--a~wC~~C~~ 33 (101)
T cd02994 4 VELTDSNWTLVLEG--EWMIEFY--APWCPACQQ 33 (101)
T ss_pred EEcChhhHHHHhCC--CEEEEEE--CCCCHHHHH
Confidence 34556677766654 3789999 999999984
No 226
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=82.98 E-value=3.1 Score=30.21 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy9732 140 YTIFAMVTIMIGALLGLLLVFIIDQIY 166 (250)
Q Consensus 140 ~~i~~~~t~~~g~~lgl~~v~~~d~~~ 166 (250)
..+++++++++.|++-.+++.++..+.
T Consensus 7 i~i~Gm~iVF~~L~lL~~~i~l~~~~~ 33 (79)
T PF04277_consen 7 IMIIGMGIVFLVLILLILVISLMSKLI 33 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667766666555555555555543
No 227
>PHA02278 thioredoxin-like protein
Probab=82.17 E-value=2.1 Score=33.00 Aligned_cols=27 Identities=0% Similarity=-0.237 Sum_probs=21.6
Q ss_pred HHHHHhhhccceeeEeecCCcchhHHHHH
Q psy9732 116 ISEIQNKKMHNKMMEDYGIPAWGSYTIFA 144 (250)
Q Consensus 116 ~F~~~~~~~~~~l~~~yg~a~W~~~~i~~ 144 (250)
.|...+.....++++|| ++||+.|-..
T Consensus 6 ~~~~~i~~~~~vvV~F~--A~WCgpCk~m 32 (103)
T PHA02278 6 DLNTAIRQKKDVIVMIT--QDNCGKCEIL 32 (103)
T ss_pred HHHHHHhCCCcEEEEEE--CCCCHHHHhH
Confidence 35556677788999999 9999999833
No 228
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=82.14 E-value=2.3 Score=32.10 Aligned_cols=29 Identities=10% Similarity=-0.032 Sum_probs=23.1
Q ss_pred hHHHHHHhhhccceeeEeecCCcchhHHHHH
Q psy9732 114 MLISEIQNKKMHNKMMEDYGIPAWGSYTIFA 144 (250)
Q Consensus 114 ~~~F~~~~~~~~~~l~~~yg~a~W~~~~i~~ 144 (250)
...|+.++.....+++.|| ++||.+|...
T Consensus 7 ~~~~~~~i~~~~~vvv~F~--a~wC~~Ck~~ 35 (102)
T cd02948 7 QEEWEELLSNKGLTVVDVY--QEWCGPCKAV 35 (102)
T ss_pred HHHHHHHHccCCeEEEEEE--CCcCHhHHHH
Confidence 4456667777788999999 9999999833
No 229
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=82.05 E-value=3.1 Score=28.90 Aligned_cols=56 Identities=9% Similarity=0.089 Sum_probs=32.4
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee-cCEe
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ-EGIR 68 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~-~Gk~ 68 (250)
..++.++|++|++.+-.+....- .+....++........+..+-..+|++.. +|..
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl-----~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~~~~~ 58 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNI-----PVEQIILQNDDEATPIRMIGAKQVPILEKDDGSF 58 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCC-----CeEEEECCCCchHHHHHhcCCCccCEEEeCCCeE
Confidence 35778999999998876665422 23334444332222223334457899877 4643
No 230
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=81.79 E-value=1.5 Score=32.94 Aligned_cols=31 Identities=10% Similarity=0.023 Sum_probs=22.1
Q ss_pred hhhhHHHHHHh-hhccceeeEeecCCcchhHHHH
Q psy9732 111 NVLMLISEIQN-KKMHNKMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 111 ~~~~~~F~~~~-~~~~~~l~~~yg~a~W~~~~i~ 143 (250)
.+....|+..+ +....+++.|| ++||++|.-
T Consensus 4 ~l~~~~~~~~i~~~~~~~lv~f~--a~wC~~C~~ 35 (109)
T cd03002 4 ELTPKNFDKVVHNTNYTTLVEFY--APWCGHCKN 35 (109)
T ss_pred EcchhhHHHHHhcCCCeEEEEEE--CCCCHHHHh
Confidence 34455677555 44455999999 999999983
No 231
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=81.56 E-value=14 Score=36.25 Aligned_cols=73 Identities=10% Similarity=0.057 Sum_probs=50.6
Q ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeeccc
Q psy9732 2 LQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIA 79 (250)
Q Consensus 2 ~~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~ 79 (250)
+++++-+.++...|..|..+...++++++... ++.+-..+.. ...|+|.+ +|+. ..++| .|-
T Consensus 17 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--~i~~~~~~~~-----------~~~p~~~~~~~~~~--~~i~f-~g~ 80 (517)
T PRK15317 17 LERPIELVASLDDSEKSAELKELLEEIASLSD--KITVEEDSLD-----------VRKPSFSITRPGED--TGVRF-AGI 80 (517)
T ss_pred CCCCEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEEccCC-----------CCCCEEEEEcCCcc--ceEEE-Eec
Confidence 35677677777789999999999999998863 5665332211 24799988 5533 23666 788
Q ss_pred cChHHH--Hhhhh
Q psy9732 80 KEIEEL--FRVEH 90 (250)
Q Consensus 80 ~s~~~l--fI~~~ 90 (250)
..-.+| ||...
T Consensus 81 P~g~Ef~s~i~~i 93 (517)
T PRK15317 81 PMGHEFTSLVLAL 93 (517)
T ss_pred CccHHHHHHHHHH
Confidence 887888 66543
No 232
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=81.22 E-value=2.1 Score=32.65 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=25.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP 48 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~ 48 (250)
+..|+.|+|+.|++....+++. ++.+-.+|..+++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~ 35 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-------GIEYEFIDYLKEP 35 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-------CCCcEEEeeccCC
Confidence 3578899999999998776652 3566677776543
No 233
>KOG3170|consensus
Probab=80.71 E-value=3.8 Score=35.98 Aligned_cols=61 Identities=20% Similarity=0.401 Sum_probs=47.6
Q ss_pred CCcE-EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEe
Q psy9732 3 QGEW-MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIR 68 (250)
Q Consensus 3 ~g~~-lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~ 68 (250)
.|.| +|..|...-+.|.-+...++++|..|+ .+.|++|-.+..- ..|-=...||+++ .|..
T Consensus 110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp--~iKFVki~at~cI---pNYPe~nlPTl~VY~~G~l 173 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFP--QIKFVKIPATTCI---PNYPESNLPTLLVYHHGAL 173 (240)
T ss_pred CccEEEEEeeccccHHHHHHHHHHHHHhhcCC--cceEEeccccccc---CCCcccCCCeEEEeecchH
Confidence 4555 578999999999999999999999997 4888888765431 2344568999988 6655
No 234
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=80.63 E-value=2.9 Score=36.90 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhhhccc
Q psy9732 148 IMIGALLGLLLVFIIDQIY 166 (250)
Q Consensus 148 ~~~g~~lgl~~v~~~d~~~ 166 (250)
++||+++-||+++..-.++
T Consensus 18 iaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 18 IAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred HHHHHHHHHHHHHhhhhee
Confidence 3344444444444344455
No 235
>KOG3171|consensus
Probab=80.31 E-value=4.3 Score=36.03 Aligned_cols=61 Identities=16% Similarity=0.295 Sum_probs=52.6
Q ss_pred cEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEe
Q psy9732 5 EWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIR 68 (250)
Q Consensus 5 ~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~ 68 (250)
.++|..|-+.-+-|-.|...+.-||..++ .+.|.+|-.+. -+...+|...++||+++ +|..
T Consensus 161 ~i~VhIYEdgi~gcealn~~~~cLAAeyP--~vKFckikss~-~gas~~F~~n~lP~LliYkgGeL 223 (273)
T KOG3171|consen 161 TIVVHIYEDGIKGCEALNSSLTCLAAEYP--IVKFCKIKSSN-TGASDRFSLNVLPTLLIYKGGEL 223 (273)
T ss_pred EEEEEEecCCCchHHHHhhhHHHhhccCC--ceeEEEeeecc-ccchhhhcccCCceEEEeeCCch
Confidence 47899999999999999999999999996 58899887653 35578999999999998 7766
No 236
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=80.09 E-value=2.4 Score=35.60 Aligned_cols=55 Identities=11% Similarity=0.180 Sum_probs=41.5
Q ss_pred CCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC---CccccccCccc
Q psy9732 3 QGEWMVEFF-APWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV---SPGLSGRFMVT 57 (250)
Q Consensus 3 ~g~~lV~FY-ApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~---~~~l~~rf~I~ 57 (250)
.++++++|| ..++|-|-..+-.|.+...+++..++.|..|..+. ...++++++++
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 346888888 58899999999999999999887788888888664 33444554443
No 237
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=78.84 E-value=1.9 Score=43.78 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=54.3
Q ss_pred CCCcEEEEEECCCCHHHHHHHH-HH--HHHHHHhCCCCeEEEEEECcCCccccccCc--------ccccCceee---cCE
Q psy9732 2 LQGEWMVEFFAPWCPACKQMEK-VW--QEYSGWAQDLNINVAQVDVTVSPGLSGRFM--------VTALPTIFQ---EGI 67 (250)
Q Consensus 2 ~~g~~lV~FYApWC~~Ck~l~P-~~--e~la~~~k~~~v~va~VD~d~~~~l~~rf~--------I~~~PT~i~---~Gk 67 (250)
.++|+|+-.-.+||.=|+-|.. .| .++|+.+. .+++-++||.++-|.+-+.|. --++|--+| +|+
T Consensus 42 edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN-~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~k 120 (667)
T COG1331 42 EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILN-ENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGK 120 (667)
T ss_pred hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHH-hCceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEEECCCCc
Confidence 3789999999999999999987 33 46777774 478889999999998877775 569997766 887
Q ss_pred e
Q psy9732 68 R 68 (250)
Q Consensus 68 ~ 68 (250)
+
T Consensus 121 P 121 (667)
T COG1331 121 P 121 (667)
T ss_pred e
Confidence 7
No 238
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=78.44 E-value=0.98 Score=31.75 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=24.3
Q ss_pred eeeEeecCCcchhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9732 127 KMMEDYGIPAWGSYTIFAMVTIMIGALLGLLLVFIID 163 (250)
Q Consensus 127 ~l~~~yg~a~W~~~~i~~~~t~~~g~~lgl~~v~~~d 163 (250)
+-+.++....|....+..++++++|+++|.++....-
T Consensus 7 V~v~~~~~~~~~pl~l~il~~f~~G~llg~l~~~~~~ 43 (68)
T PF06305_consen 7 VTVNFLFGQFPLPLGLLILIAFLLGALLGWLLSLPSR 43 (68)
T ss_pred EEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455667777888899999997776543
No 239
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=78.35 E-value=3.3 Score=30.83 Aligned_cols=30 Identities=7% Similarity=-0.046 Sum_probs=22.2
Q ss_pred hhhHHHHHHh-hhccceeeEeecCCcchhHHHH
Q psy9732 112 VLMLISEIQN-KKMHNKMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 112 ~~~~~F~~~~-~~~~~~l~~~yg~a~W~~~~i~ 143 (250)
+....|+..+ ...+.+++.|| ++||.+|..
T Consensus 6 l~~~~f~~~i~~~~~~v~v~f~--a~wC~~C~~ 36 (104)
T cd03004 6 LTPEDFPELVLNRKEPWLVDFY--APWCGPCQA 36 (104)
T ss_pred cCHHHHHHHHhcCCCeEEEEEE--CCCCHHHHH
Confidence 4455677554 55568999999 999999883
No 240
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=78.22 E-value=1.9 Score=37.94 Aligned_cols=15 Identities=13% Similarity=0.538 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhh
Q psy9732 149 MIGALLGLLLVFIID 163 (250)
Q Consensus 149 ~~g~~lgl~~v~~~d 163 (250)
.++++|-|+++.++.
T Consensus 47 ~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 47 IMTVILVIFIVVLVR 61 (221)
T ss_pred hhhhHHHHHHHHHHH
Confidence 345566666666665
No 241
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.96 E-value=3.4 Score=30.69 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=38.1
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc----------------cccccCcccccCceee-cCEe
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP----------------GLSGRFMVTALPTIFQ-EGIR 68 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~----------------~l~~rf~I~~~PT~i~-~Gk~ 68 (250)
+.|+|--||.|..+...++++. +.+-.|++++.- +-.+.+|--|+|.++. +|+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~-------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~v 75 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN-------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKV 75 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC-------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcE
Confidence 7899999999988777777653 344445544321 2245667779999999 8876
No 242
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=76.56 E-value=3.5 Score=30.29 Aligned_cols=30 Identities=13% Similarity=-0.068 Sum_probs=23.3
Q ss_pred hhHHHHHHhhhccceeeEeecCCcchhHHHHH
Q psy9732 113 LMLISEIQNKKMHNKMMEDYGIPAWGSYTIFA 144 (250)
Q Consensus 113 ~~~~F~~~~~~~~~~l~~~yg~a~W~~~~i~~ 144 (250)
....|+..+.....+++.|| ++||.+|.-.
T Consensus 6 ~~~~~~~~~~~~~~~~v~f~--a~wC~~C~~~ 35 (104)
T cd02997 6 TDEDFRKFLKKEKHVLVMFY--APWCGHCKKM 35 (104)
T ss_pred chHhHHHHHhhCCCEEEEEE--CCCCHHHHHh
Confidence 44567766767778899999 9999999844
No 243
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=76.07 E-value=2.2 Score=34.29 Aligned_cols=45 Identities=9% Similarity=0.249 Sum_probs=29.1
Q ss_pred eeEeecCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccC
Q psy9732 128 MMEDYGIPAWGSYTIFAMVTIMIGALLGLLLVFIIDQIYPPSAVV 172 (250)
Q Consensus 128 l~~~yg~a~W~~~~i~~~~t~~~g~~lgl~~v~~~d~~~~~k~~~ 172 (250)
+.+.+|+++|..-.+|.+++++.|..+++++=+++-++.|.++..
T Consensus 20 lA~y~gi~~~~VRl~~vl~~~~~~~~~~ll~Y~i~w~~lp~~p~~ 64 (121)
T TIGR02978 20 LADYFGVEVWLVRILVVSALLFGGGFFVLVAYIALWLLLDKKPIN 64 (121)
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCccc
Confidence 456678899988888887776655444444344455566766643
No 244
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=75.44 E-value=3.2 Score=30.28 Aligned_cols=30 Identities=10% Similarity=-0.095 Sum_probs=23.0
Q ss_pred hhhHHHHHHhhh-ccceeeEeecCCcchhHHHH
Q psy9732 112 VLMLISEIQNKK-MHNKMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 112 ~~~~~F~~~~~~-~~~~l~~~yg~a~W~~~~i~ 143 (250)
++...|+..+.. ...+++.|| ++||.+|..
T Consensus 4 lt~~~f~~~i~~~~~~vvv~f~--~~~C~~C~~ 34 (103)
T PF00085_consen 4 LTDENFEKFINESDKPVVVYFY--APWCPPCKA 34 (103)
T ss_dssp ESTTTHHHHHTTTSSEEEEEEE--STTSHHHHH
T ss_pred CCHHHHHHHHHccCCCEEEEEe--CCCCCcccc
Confidence 344557766655 788999998 999999984
No 245
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=75.23 E-value=1.2 Score=35.76 Aligned_cols=22 Identities=14% Similarity=0.486 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q psy9732 145 MVTIMIGALLGLLLVFIIDQIY 166 (250)
Q Consensus 145 ~~t~~~g~~lgl~~v~~~d~~~ 166 (250)
++.+++|+++|+++++++-.+|
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~ 87 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYC 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHH
Confidence 3456667777776655443344
No 246
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=74.51 E-value=0.99 Score=33.78 Aligned_cols=13 Identities=15% Similarity=-0.095 Sum_probs=0.0
Q ss_pred ccccCceeeeeee
Q psy9732 205 GLIEGTVTTKVLP 217 (250)
Q Consensus 205 ~~~~~~~~~~~~~ 217 (250)
+|+|..++.|.-.
T Consensus 47 deeee~m~rK~k~ 59 (81)
T PF14812_consen 47 DEEEEPMPRKGKK 59 (81)
T ss_dssp -------------
T ss_pred hhhcccccccccc
Confidence 3466777777654
No 247
>PHA03075 glutaredoxin-like protein; Provisional
Probab=74.30 E-value=4.4 Score=32.46 Aligned_cols=30 Identities=17% Similarity=0.401 Sum_probs=26.4
Q ss_pred CcEEEEEECCCCHHHHHHHHHHHHHHHHhC
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQ 33 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e~la~~~k 33 (250)
+.++|.|--|.|+-|......+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999999988877764
No 248
>KOG4277|consensus
Probab=74.17 E-value=1.8 Score=40.27 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=16.1
Q ss_pred hhccceeeEeecCCcchhHHH
Q psy9732 122 KKMHNKMMEDYGIPAWGSYTI 142 (250)
Q Consensus 122 ~~~~~~l~~~yg~a~W~~~~i 142 (250)
+...-||++|| +|||+||.
T Consensus 41 kdddiW~VdFY--APWC~HCK 59 (468)
T KOG4277|consen 41 KDDDIWFVDFY--APWCAHCK 59 (468)
T ss_pred ccCCeEEEEee--chhhhhcc
Confidence 45566999999 99999986
No 249
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=74.14 E-value=6 Score=30.88 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=25.8
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP 48 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~ 48 (250)
..|+.++|+.|++....+++ .++.+-.+|..+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCCh
Confidence 46889999999999877775 24667777776654
No 250
>PRK09381 trxA thioredoxin; Provisional
Probab=73.98 E-value=4.6 Score=30.41 Aligned_cols=31 Identities=6% Similarity=-0.062 Sum_probs=22.5
Q ss_pred hhhHHHH-HHhhhccceeeEeecCCcchhHHHHH
Q psy9732 112 VLMLISE-IQNKKMHNKMMEDYGIPAWGSYTIFA 144 (250)
Q Consensus 112 ~~~~~F~-~~~~~~~~~l~~~yg~a~W~~~~i~~ 144 (250)
+....|+ .+......+++.|| ++||.+|.-.
T Consensus 8 ~~~~~~~~~v~~~~~~vvv~f~--~~~C~~C~~~ 39 (109)
T PRK09381 8 LTDDSFDTDVLKADGAILVDFW--AEWCGPCKMI 39 (109)
T ss_pred eChhhHHHHHhcCCCeEEEEEE--CCCCHHHHHH
Confidence 3344555 45566678999999 9999999844
No 251
>KOG0910|consensus
Probab=73.91 E-value=3.2 Score=34.56 Aligned_cols=29 Identities=3% Similarity=-0.088 Sum_probs=23.2
Q ss_pred hhHHHHHHhhhccceeeEeecCCcchhHHHH
Q psy9732 113 LMLISEIQNKKMHNKMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 113 ~~~~F~~~~~~~~~~l~~~yg~a~W~~~~i~ 143 (250)
.+.+-+.++++...++++|| |+||+.|-+
T Consensus 50 ~~~~~~~Vi~S~~PVlVdF~--A~WCgPCk~ 78 (150)
T KOG0910|consen 50 DSEFDDKVINSDVPVLVDFH--AEWCGPCKM 78 (150)
T ss_pred HHHHHHHHHccCCCEEEEEe--cCcCccHhH
Confidence 33433377888999999999 999999983
No 252
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=73.83 E-value=3.2 Score=32.43 Aligned_cols=20 Identities=30% Similarity=0.624 Sum_probs=12.1
Q ss_pred CcchhHHHHHHHHHHHHHHH
Q psy9732 135 PAWGSYTIFAMVTIMIGALL 154 (250)
Q Consensus 135 a~W~~~~i~~~~t~~~g~~l 154 (250)
.|||+..+-+...+++|+++
T Consensus 82 ~PWq~VGvaAaVGlllGlLl 101 (104)
T COG4575 82 NPWQGVGVAAAVGLLLGLLL 101 (104)
T ss_pred CCchHHHHHHHHHHHHHHHH
Confidence 59999877554444444443
No 253
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=73.59 E-value=11 Score=26.02 Aligned_cols=54 Identities=19% Similarity=0.394 Sum_probs=35.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC----CccccccCcccccCceeecC
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV----SPGLSGRFMVTALPTIFQEG 66 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~----~~~l~~rf~I~~~PT~i~~G 66 (250)
..|+.+.|++|++..-.+++.. ..+....+|..+ .+.+.+......+|++..+|
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~g-----i~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~ 59 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALG-----LELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNG 59 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcC-----CCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECC
Confidence 4688999999998876666543 234455566432 24455555566889996654
No 254
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=73.05 E-value=6.5 Score=30.49 Aligned_cols=34 Identities=21% Similarity=0.496 Sum_probs=25.3
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP 48 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~ 48 (250)
..|..|+|+.|++....+++ .++.+-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCceEEecccCCc
Confidence 46889999999998877665 24667777776554
No 255
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=73.03 E-value=3 Score=28.86 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=33.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCC-ccccccCcccccCceeecC
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS-PGLSGRFMVTALPTIFQEG 66 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~-~~l~~rf~I~~~PT~i~~G 66 (250)
|..|+.++|+.|++..-.+++..- .+....+|.... +.+.+......+|++..+|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi-----~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~ 56 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGV-----SVEIIDVDPDNPPEDLAELNPYGTVPTLVDRD 56 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCC-----ccEEEEcCCCCCCHHHHhhCCCCCCCEEEECC
Confidence 356788999999998876655432 334444554432 3444444556889775544
No 256
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=72.26 E-value=5.4 Score=29.22 Aligned_cols=30 Identities=13% Similarity=0.074 Sum_probs=22.0
Q ss_pred hhhhHHHHHHh-hhccceeeEeecCCcchhHHH
Q psy9732 111 NVLMLISEIQN-KKMHNKMMEDYGIPAWGSYTI 142 (250)
Q Consensus 111 ~~~~~~F~~~~-~~~~~~l~~~yg~a~W~~~~i 142 (250)
.+....|+..+ .....+++.|| ++||++|.
T Consensus 4 ~l~~~~f~~~i~~~~~~~~v~f~--~~~C~~C~ 34 (104)
T cd02995 4 VVVGKNFDEVVLDSDKDVLVEFY--APWCGHCK 34 (104)
T ss_pred EEchhhhHHHHhCCCCcEEEEEE--CCCCHHHH
Confidence 34455677555 44477899999 99999988
No 257
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=72.19 E-value=7.4 Score=31.24 Aligned_cols=35 Identities=23% Similarity=0.524 Sum_probs=25.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP 48 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~ 48 (250)
+..|+.|+|+.|++....+++- ++.+-.+|..+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCcEEeeccCCh
Confidence 4577889999999988666542 4667777776554
No 258
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=71.99 E-value=4.1 Score=31.01 Aligned_cols=30 Identities=10% Similarity=0.207 Sum_probs=21.9
Q ss_pred hhhHHHHHHh---hhccceeeEeecCCcchhHHHH
Q psy9732 112 VLMLISEIQN---KKMHNKMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 112 ~~~~~F~~~~---~~~~~~l~~~yg~a~W~~~~i~ 143 (250)
+....|+.++ +....+|+.|| ++||.+|.-
T Consensus 6 ~~~~~~~~~~~~~~~~k~vlv~f~--a~wC~~C~~ 38 (109)
T cd02993 6 LSRAEIEALAKGERRNQSTLVVLY--APWCPFCQA 38 (109)
T ss_pred ccHHHHHHHHhhhhcCCCEEEEEE--CCCCHHHHH
Confidence 3445566554 34578999999 999999983
No 259
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=71.43 E-value=4.3 Score=29.75 Aligned_cols=29 Identities=7% Similarity=-0.001 Sum_probs=20.8
Q ss_pred hhhHHHHHHhhhccceeeEeecCCcchhHHHH
Q psy9732 112 VLMLISEIQNKKMHNKMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 112 ~~~~~F~~~~~~~~~~l~~~yg~a~W~~~~i~ 143 (250)
+....|+..+... .+++.|| ++||.+|..
T Consensus 5 l~~~~f~~~~~~~-~~lv~f~--a~wC~~C~~ 33 (102)
T cd03005 5 LTEDNFDHHIAEG-NHFVKFF--APWCGHCKR 33 (102)
T ss_pred CCHHHHHHHhhcC-CEEEEEE--CCCCHHHHH
Confidence 3445577555444 4899999 999999883
No 260
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=71.31 E-value=6.8 Score=26.65 Aligned_cols=9 Identities=44% Similarity=0.659 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q psy9732 153 LLGLLLVFI 161 (250)
Q Consensus 153 ~lgl~~v~~ 161 (250)
++|++.+++
T Consensus 12 v~~lLg~~I 20 (50)
T PF12606_consen 12 VMGLLGLSI 20 (50)
T ss_pred HHHHHHHHH
Confidence 344444433
No 261
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=71.27 E-value=5.5 Score=29.73 Aligned_cols=26 Identities=4% Similarity=-0.069 Sum_probs=20.9
Q ss_pred HHHHhhhccceeeEeecCCcchhHHHHH
Q psy9732 117 SEIQNKKMHNKMMEDYGIPAWGSYTIFA 144 (250)
Q Consensus 117 F~~~~~~~~~~l~~~yg~a~W~~~~i~~ 144 (250)
|+..++..+.+++.|| ++||.+|...
T Consensus 4 ~~~~~~~~k~vlv~f~--a~wC~~C~~~ 29 (104)
T cd02953 4 LAQALAQGKPVFVDFT--ADWCVTCKVN 29 (104)
T ss_pred HHHHHHcCCeEEEEEE--cchhHHHHHH
Confidence 5556677788999999 9999999843
No 262
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=70.58 E-value=7.8 Score=27.23 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=31.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ 64 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~ 64 (250)
+..|+.+.|+.|++.+-.+.+..- .+.+..+|......+ ..-+-..+|++..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi-----~y~~~~~~~~~~~~~-~~~~~~~vP~l~~ 53 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGI-----PYEVVEVNPVSRKEI-KWSSYKKVPILRV 53 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC-----ceEEEECCchhHHHH-HHhCCCccCEEEE
Confidence 456788999999999866655422 233333333222223 2234568999987
No 263
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=70.49 E-value=6.8 Score=29.53 Aligned_cols=25 Identities=12% Similarity=-0.126 Sum_probs=18.6
Q ss_pred HHHHhhh--ccceeeEeecCCcchhHHHH
Q psy9732 117 SEIQNKK--MHNKMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 117 F~~~~~~--~~~~l~~~yg~a~W~~~~i~ 143 (250)
|+..+.. ...+++.|| ++||+.|..
T Consensus 6 ~~~~i~~~~~k~vvv~F~--a~wC~~C~~ 32 (103)
T cd02985 6 LDEALKKAKGRLVVLEFA--LKHSGPSVK 32 (103)
T ss_pred HHHHHHHcCCCEEEEEEE--CCCCHhHHH
Confidence 4544433 567999999 999999983
No 264
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=69.68 E-value=7.2 Score=30.17 Aligned_cols=32 Identities=9% Similarity=-0.091 Sum_probs=22.8
Q ss_pred hhhhHHHHHHhhh-ccceeeEeecCCcchhHHHHH
Q psy9732 111 NVLMLISEIQNKK-MHNKMMEDYGIPAWGSYTIFA 144 (250)
Q Consensus 111 ~~~~~~F~~~~~~-~~~~l~~~yg~a~W~~~~i~~ 144 (250)
.+....|+..+.. ...+++.|| ++||.+|...
T Consensus 5 ~l~~~~f~~~i~~~~~~vvV~f~--a~wC~~C~~~ 37 (114)
T cd02992 5 VLDAASFNSALLGSPSAWLVEFY--ASWCGHCRAF 37 (114)
T ss_pred ECCHHhHHHHHhcCCCeEEEEEE--CCCCHHHHHH
Confidence 4455567755443 457999999 9999999844
No 265
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.47 E-value=5.2 Score=38.26 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=55.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceeecCEeeeeeeeeeccccChHHH
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~~Gk~~~~~~~y~~G~~s~~~l 85 (250)
|=-|++-.|..|-..-..+.-++-. +.+|.-..||-.-.+.-.+.-+|.++||+++||+. +-+|..+.++|
T Consensus 120 FETy~SltC~nCPDVVQALN~msvl--Np~I~H~~IdGa~Fq~Evear~IMaVPtvflnGe~------fg~GRmtleei 190 (520)
T COG3634 120 FETYFSLTCHNCPDVVQALNLMSVL--NPRIKHTAIDGALFQDEVEARNIMAVPTVFLNGEE------FGQGRMTLEEI 190 (520)
T ss_pred EEEEEEeeccCChHHHHHHHHHHhc--CCCceeEEecchhhHhHHHhccceecceEEEcchh------hcccceeHHHH
Confidence 4456788899998888777766655 35799999998766555666699999999998876 33799999988
No 266
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=68.62 E-value=44 Score=25.37 Aligned_cols=66 Identities=9% Similarity=0.068 Sum_probs=41.7
Q ss_pred CCcE-EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeeccc
Q psy9732 3 QGEW-MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIA 79 (250)
Q Consensus 3 ~g~~-lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~ 79 (250)
++++ ++.|..+. ..|+.+...++++++... ++.+-..+..+ ..|++.+ +|+. ..++| .|-
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd--kI~~~~~~~~~-----------~~P~~~i~~~~~~--~gIrF-~Gi 80 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD--KITLEEDNDDE-----------RKPSFSINRPGED--TGIRF-AGI 80 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC--ceEEEEecCCC-----------CCCEEEEecCCCc--ccEEE-Eec
Confidence 4455 44555555 999999999999998753 46554333211 4699988 5422 23566 676
Q ss_pred cChHHH
Q psy9732 80 KEIEEL 85 (250)
Q Consensus 80 ~s~~~l 85 (250)
..-.+|
T Consensus 81 P~GhEf 86 (94)
T cd02974 81 PMGHEF 86 (94)
T ss_pred CCchhH
Confidence 665565
No 267
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=68.45 E-value=5.5 Score=30.76 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=25.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP 48 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~ 48 (250)
+..|+.|+|+.|++....+++- ++.+-.+|..+++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-------~i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-------GVAYTFHDYRKDG 35 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-------CCCeEEEecccCC
Confidence 3578899999999988766642 4666667766554
No 268
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=67.63 E-value=19 Score=26.30 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=36.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCC-ccccccCcccccCceee-cCEe
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS-PGLSGRFMVTALPTIFQ-EGIR 68 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~-~~l~~rf~I~~~PT~i~-~Gk~ 68 (250)
+..|+.+.|+.|++..-.++.. +..+.+..+|.... +.+.+......+|++.. +|..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~-----gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~ 77 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK-----NIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKV 77 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-----CCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCE
Confidence 4556788899999987665553 23345556665433 23445555678999988 4644
No 269
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=66.10 E-value=7.3 Score=28.54 Aligned_cols=29 Identities=10% Similarity=0.025 Sum_probs=20.5
Q ss_pred hhhHHHHHHh-hhccceeeEeecCCcchhHHH
Q psy9732 112 VLMLISEIQN-KKMHNKMMEDYGIPAWGSYTI 142 (250)
Q Consensus 112 ~~~~~F~~~~-~~~~~~l~~~yg~a~W~~~~i 142 (250)
+....|+..+ +....+++.|| ++||.+|.
T Consensus 5 l~~~~~~~~i~~~~~~vlv~f~--a~~C~~C~ 34 (103)
T cd03001 5 LTDSNFDKKVLNSDDVWLVEFY--APWCGHCK 34 (103)
T ss_pred cCHHhHHHHHhcCCCcEEEEEE--CCCCHHHH
Confidence 3445566554 44455899998 99999988
No 270
>KOG1832|consensus
Probab=66.00 E-value=3 Score=43.91 Aligned_cols=8 Identities=25% Similarity=0.621 Sum_probs=4.8
Q ss_pred ceee-cCEe
Q psy9732 61 TIFQ-EGIR 68 (250)
Q Consensus 61 T~i~-~Gk~ 68 (250)
++++ +|..
T Consensus 1243 ~LIlndGvL 1251 (1516)
T KOG1832|consen 1243 TLILNDGVL 1251 (1516)
T ss_pred ceEeeCcee
Confidence 4566 7765
No 271
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=65.89 E-value=15 Score=29.55 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=36.7
Q ss_pred HHHHHHHhCCCCeEEEEEECcCCc----------cccccCcccccCceeecCEeeeeeeeeeccccChHHH--Hhh
Q psy9732 25 WQEYSGWAQDLNINVAQVDVTVSP----------GLSGRFMVTALPTIFQEGIRGNIERGYFNIAKEIEEL--FRV 88 (250)
Q Consensus 25 ~e~la~~~k~~~v~va~VD~d~~~----------~l~~rf~I~~~PT~i~~Gk~~~~~~~y~~G~~s~~~l--fI~ 88 (250)
|....+.+++.++.+.+-|.+.++ ++-++-|...+|-+++||+. +.. ....+.++| |..
T Consensus 29 ~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVdGei----v~~-G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 29 FAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVDGEI----VKT-GRYPTNEELAEWLG 99 (123)
T ss_dssp HHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEETTEE----EEE-SS---HHHHHHHHT
T ss_pred HHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEECCEE----EEe-cCCCCHHHHHHHhC
Confidence 333344444557999999999877 44455688999999999998 665 455667777 554
No 272
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=65.31 E-value=3 Score=39.21 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=19.4
Q ss_pred eEeeeccccccccc-------CCCCeeecCCCceeee
Q psy9732 218 LRIQRTGYKKASYC-------KNKPYLFNNNNNRLEW 247 (250)
Q Consensus 218 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 247 (250)
-+|+|+-=|---+- .+|-|+|+.-+..+||
T Consensus 339 ~kv~r~k~~wk~~lk~g~~~~~~~d~~f~~~~ge~~w 375 (375)
T PF03153_consen 339 DKVTRVKNKWKCTLKDGIMHINGKDYVFQKATGEFEW 375 (375)
T ss_dssp EEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEEE-
T ss_pred eccccccceeEEEeeeeEEEECCeEEEEeeeeeeecC
Confidence 36777643322222 3678999999999999
No 273
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=64.38 E-value=9.2 Score=37.49 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=26.3
Q ss_pred eeehhhhHHHHHHhh---hccceeeEeecCCcchhHHH
Q psy9732 108 IQCNVLMLISEIQNK---KMHNKMMEDYGIPAWGSYTI 142 (250)
Q Consensus 108 ~~~~~~~~~F~~~~~---~~~~~l~~~yg~a~W~~~~i 142 (250)
.+..+....|+..++ ....+|+.|| +|||.+|.
T Consensus 352 ~Vv~L~~~nf~~~v~~~~~~k~VLV~Fy--ApWC~~Ck 387 (463)
T TIGR00424 352 NVVSLSRPGIENLLKLEERKEAWLVVLY--APWCPFCQ 387 (463)
T ss_pred CeEECCHHHHHHHHhhhcCCCeEEEEEE--CCCChHHH
Confidence 455677778887664 5567999999 99999998
No 274
>PRK12559 transcriptional regulator Spx; Provisional
Probab=63.96 E-value=15 Score=29.49 Aligned_cols=35 Identities=14% Similarity=0.420 Sum_probs=24.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP 48 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~ 48 (250)
+..|+.|+|+.|++....+++- ++.+-.+|..+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-------gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-------QIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCeEEEEeeCCc
Confidence 4578899999999987665542 4566667766554
No 275
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=63.89 E-value=67 Score=31.45 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=49.3
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--cCEeeeeeeeeecccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--EGIRGNIERGYFNIAK 80 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G~~ 80 (250)
++++-+.++..-|..|..+...++++++... ++.+...+... ...|++.+ +|+. ..++| .|..
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--ki~~~~~~~~~----------~~~p~~~~~~~~~~--~~i~f-~g~P 82 (515)
T TIGR03140 18 ENPVTLVLSAGSHEKSKELLELLDEIASLSD--KISLTQNTADT----------LRKPSFTILRDGAD--TGIRF-AGIP 82 (515)
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHhCC--CeEEEEecCCc----------CCCCeEEEecCCcc--cceEE-EecC
Confidence 5566666666579999999999999998863 56664433221 34599977 6643 23566 7888
Q ss_pred ChHHH--Hhhh
Q psy9732 81 EIEEL--FRVE 89 (250)
Q Consensus 81 s~~~l--fI~~ 89 (250)
.-.+| ||..
T Consensus 83 ~g~Ef~s~i~~ 93 (515)
T TIGR03140 83 GGHEFTSLVLA 93 (515)
T ss_pred CcHHHHHHHHH
Confidence 87888 6654
No 276
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=63.83 E-value=16 Score=30.69 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=25.5
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEE
Q psy9732 9 EFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVD 43 (250)
Q Consensus 9 ~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD 43 (250)
.|.-|.|+.|-.+.|.|.++...+.. .+.+--|=
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~-~i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN-KIEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T-TEEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC-cEEEEEEE
Confidence 58899999999999999999999964 56554443
No 277
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=63.37 E-value=18 Score=28.05 Aligned_cols=35 Identities=17% Similarity=0.461 Sum_probs=25.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP 48 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~ 48 (250)
+..|+.++|+.|++....+++. ++.+-.+|..+++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-------gi~~~~idi~~~~ 36 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-------QIPFEERNLFKQP 36 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCceEEEecCCCc
Confidence 3467789999999988777652 3566667765543
No 278
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=62.75 E-value=48 Score=23.13 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=35.6
Q ss_pred EECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCC-ccccccCcccccCceeecCEe
Q psy9732 10 FFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS-PGLSGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 10 FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~-~~l~~rf~I~~~PT~i~~Gk~ 68 (250)
++.++|+.|++..=.++.. +..+.+..++..+. +.+.....-..+|++..+|..
T Consensus 2 y~~~~Sp~~~kv~~~l~~~-----~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~ 56 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEK-----GIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEV 56 (75)
T ss_dssp EEETTSHHHHHHHHHHHHH-----TEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEE
T ss_pred CCcCCChHHHHHHHHHHHc-----CCeEEEeccCcccchhHHHhhcccccceEEEECCEE
Confidence 6789999999987555443 22345556665443 455556667789999876654
No 279
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=62.60 E-value=8.6 Score=30.06 Aligned_cols=26 Identities=8% Similarity=-0.066 Sum_probs=19.9
Q ss_pred HHHHhhhccceeeEeecCCcchhHHHHH
Q psy9732 117 SEIQNKKMHNKMMEDYGIPAWGSYTIFA 144 (250)
Q Consensus 117 F~~~~~~~~~~l~~~yg~a~W~~~~i~~ 144 (250)
++......+.+|+.|+ ++||++|..-
T Consensus 12 l~~A~~~~kpVlV~F~--a~WC~~C~~~ 37 (117)
T cd02959 12 IKEAKDSGKPLMLLIH--KTWCGACKAL 37 (117)
T ss_pred HHHHHHcCCcEEEEEe--CCcCHHHHHH
Confidence 4445566678999999 9999999833
No 280
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=61.76 E-value=16 Score=30.29 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=22.2
Q ss_pred ehhhhHHHHHHhh-h-ccceeeEeecCCcchhHHH
Q psy9732 110 CNVLMLISEIQNK-K-MHNKMMEDYGIPAWGSYTI 142 (250)
Q Consensus 110 ~~~~~~~F~~~~~-~-~~~~l~~~yg~a~W~~~~i 142 (250)
..+....|+..+. . ...+++.|| ++||.+|.
T Consensus 31 ~~l~~~~f~~~l~~~~~~~vvV~Fy--a~wC~~Ck 63 (152)
T cd02962 31 KYFTPKTLEEELERDKRVTWLVEFF--TTWSPECV 63 (152)
T ss_pred EEcCHHHHHHHHHhcCCCEEEEEEE--CCCCHHHH
Confidence 3444556775553 2 356899999 99999998
No 281
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=61.70 E-value=12 Score=33.06 Aligned_cols=35 Identities=11% Similarity=-0.068 Sum_probs=26.3
Q ss_pred ceeehhhhHHHHHHhhh-----ccceeeEeecCCcchhHHHH
Q psy9732 107 TIQCNVLMLISEIQNKK-----MHNKMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 107 s~~~~~~~~~F~~~~~~-----~~~~l~~~yg~a~W~~~~i~ 143 (250)
+.+..+....|+..+.. ...+++.|| ++||.+|.-
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~Fy--ApWC~~Ck~ 69 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFY--APWCSHCRK 69 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEE--CCCChHHHH
Confidence 34556777788866543 367999999 999999983
No 282
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=61.04 E-value=11 Score=27.39 Aligned_cols=19 Identities=0% Similarity=-0.157 Sum_probs=15.8
Q ss_pred ccceeeEeecCCcchhHHHHH
Q psy9732 124 MHNKMMEDYGIPAWGSYTIFA 144 (250)
Q Consensus 124 ~~~~l~~~yg~a~W~~~~i~~ 144 (250)
...+++.|| ++||++|...
T Consensus 12 ~~~vlv~f~--a~wC~~C~~~ 30 (96)
T cd02956 12 QVPVVVDFW--APRSPPSKEL 30 (96)
T ss_pred CCeEEEEEE--CCCChHHHHH
Confidence 457899999 9999999833
No 283
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=60.82 E-value=14 Score=26.25 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=30.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCC----ccccccCcccccCceee
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS----PGLSGRFMVTALPTIFQ 64 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~----~~l~~rf~I~~~PT~i~ 64 (250)
..++.++|+.|++.+-.+++.. +.+-.+++... +++....+-..+|++..
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g-------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE-------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC-------CcEEEEECCCChHHHHHHHHhCCCCcccEEEe
Confidence 4566789999999886666543 33333444332 23333335568999877
No 284
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=60.17 E-value=7.7 Score=30.47 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=20.5
Q ss_pred EECcCCccccccCcccccCceee-cC
Q psy9732 42 VDVTVSPGLSGRFMVTALPTIFQ-EG 66 (250)
Q Consensus 42 VD~d~~~~l~~rf~I~~~PT~i~-~G 66 (250)
..+.=+|.+.++|+|+.+||+++ .+
T Consensus 55 ~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 55 PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred cceeEChhHHhhCCceEcCEEEEEcC
Confidence 34445788999999999999999 55
No 285
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=60.10 E-value=9 Score=28.90 Aligned_cols=19 Identities=11% Similarity=0.321 Sum_probs=16.0
Q ss_pred hccceeeEeecCCcchhHHHH
Q psy9732 123 KMHNKMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 123 ~~~~~l~~~yg~a~W~~~~i~ 143 (250)
..+.+++.|| ++||.+|..
T Consensus 17 ~g~~vlV~F~--a~WC~~C~~ 35 (100)
T cd02999 17 REDYTAVLFY--ASWCPFSAS 35 (100)
T ss_pred CCCEEEEEEE--CCCCHHHHh
Confidence 4566999999 999999983
No 286
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=59.78 E-value=14 Score=28.17 Aligned_cols=28 Identities=7% Similarity=-0.267 Sum_probs=20.4
Q ss_pred hhHHHHHHhhhc---cceeeEeecCCcchhHHH
Q psy9732 113 LMLISEIQNKKM---HNKMMEDYGIPAWGSYTI 142 (250)
Q Consensus 113 ~~~~F~~~~~~~---~~~l~~~yg~a~W~~~~i 142 (250)
.+..|...+... ..+++.|| ++||+.|.
T Consensus 10 ~~~~f~~~i~~~~~~~~vvv~F~--a~~c~~C~ 40 (113)
T cd02957 10 SSKEFLEEVTKASKGTRVVVHFY--EPGFPRCK 40 (113)
T ss_pred cHHHHHHHHHccCCCCEEEEEEe--CCCCCcHH
Confidence 335566555443 67889999 99999988
No 287
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=59.73 E-value=27 Score=28.67 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=29.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEE
Q psy9732 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVD 43 (250)
Q Consensus 6 ~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD 43 (250)
.+..||..-||.|-...+.+.++.+.+.+.+|.+.-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 36889999999999999999999999844334444443
No 288
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=58.88 E-value=9.5 Score=24.46 Aligned_cols=13 Identities=15% Similarity=0.741 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q psy9732 148 IMIGALLGLLLVF 160 (250)
Q Consensus 148 ~~~g~~lgl~~v~ 160 (250)
+.+|+++|++++.
T Consensus 8 IIv~V~vg~~iii 20 (38)
T PF02439_consen 8 IIVAVVVGMAIII 20 (38)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555554443
No 289
>PTZ00051 thioredoxin; Provisional
Probab=58.80 E-value=18 Score=26.28 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=22.4
Q ss_pred hHHHHHHhhhccceeeEeecCCcchhHHHHH
Q psy9732 114 MLISEIQNKKMHNKMMEDYGIPAWGSYTIFA 144 (250)
Q Consensus 114 ~~~F~~~~~~~~~~l~~~yg~a~W~~~~i~~ 144 (250)
...|+..++....+++.|| ++||.+|.-.
T Consensus 8 ~~~~~~~~~~~~~vli~f~--~~~C~~C~~~ 36 (98)
T PTZ00051 8 QAEFESTLSQNELVIVDFY--AEWCGPCKRI 36 (98)
T ss_pred HHHHHHHHhcCCeEEEEEE--CCCCHHHHHH
Confidence 3456667777778899998 9999998843
No 290
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=58.76 E-value=8.7 Score=28.04 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=19.6
Q ss_pred hHHHHHHhhhc-cceeeEeecCCcchhHHH
Q psy9732 114 MLISEIQNKKM-HNKMMEDYGIPAWGSYTI 142 (250)
Q Consensus 114 ~~~F~~~~~~~-~~~l~~~yg~a~W~~~~i 142 (250)
...|+..++.. ..+++.+| ++||.+|.
T Consensus 7 ~~~~~~~~~~~~~~~~v~f~--a~~C~~C~ 34 (105)
T cd02998 7 DSNFDKVVGDDKKDVLVEFY--APWCGHCK 34 (105)
T ss_pred hhcHHHHhcCCCCcEEEEEE--CCCCHHHH
Confidence 34466555443 47888998 99999987
No 291
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=58.72 E-value=12 Score=28.57 Aligned_cols=30 Identities=10% Similarity=-0.058 Sum_probs=20.7
Q ss_pred hhHHHH-HHhh--hccceeeEeecCCcchhHHHHH
Q psy9732 113 LMLISE-IQNK--KMHNKMMEDYGIPAWGSYTIFA 144 (250)
Q Consensus 113 ~~~~F~-~~~~--~~~~~l~~~yg~a~W~~~~i~~ 144 (250)
+...|. ..+. ....+++.|| ++||.+|...
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~--a~wC~~C~~~ 42 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKIT--SDWCFSCIHI 42 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEE--CCccHhHHHh
Confidence 344454 3332 4577999999 9999999843
No 292
>PRK10996 thioredoxin 2; Provisional
Probab=58.54 E-value=16 Score=29.33 Aligned_cols=32 Identities=6% Similarity=-0.065 Sum_probs=25.2
Q ss_pred ehhhhHHHHHHhhhccceeeEeecCCcchhHHHH
Q psy9732 110 CNVLMLISEIQNKKMHNKMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 110 ~~~~~~~F~~~~~~~~~~l~~~yg~a~W~~~~i~ 143 (250)
.......|+..++....+++.|| ++||++|..
T Consensus 38 i~~~~~~~~~~i~~~k~vvv~F~--a~wC~~C~~ 69 (139)
T PRK10996 38 INATGETLDKLLQDDLPVVIDFW--APWCGPCRN 69 (139)
T ss_pred EEcCHHHHHHHHhCCCeEEEEEE--CCCCHHHHH
Confidence 34556667777777788999999 999999883
No 293
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=58.24 E-value=9.7 Score=27.62 Aligned_cols=27 Identities=11% Similarity=0.010 Sum_probs=21.1
Q ss_pred HHHHHHhhhccceeeEeecCCcchhHHHH
Q psy9732 115 LISEIQNKKMHNKMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 115 ~~F~~~~~~~~~~l~~~yg~a~W~~~~i~ 143 (250)
..|+..+.....+++.|| ++||.+|.-
T Consensus 4 ~~~~~~~~~~~~~~i~f~--~~~C~~c~~ 30 (102)
T TIGR01126 4 SNFDDIVLSNKDVLVEFY--APWCGHCKN 30 (102)
T ss_pred hhHHHHhccCCcEEEEEE--CCCCHHHHh
Confidence 456666666777899998 999999873
No 294
>KOG3540|consensus
Probab=57.94 E-value=6.1 Score=38.82 Aligned_cols=9 Identities=44% Similarity=0.659 Sum_probs=3.9
Q ss_pred HHHHHHhhh
Q psy9732 155 GLLLVFIID 163 (250)
Q Consensus 155 gl~~v~~~d 163 (250)
|+++=|-+|
T Consensus 171 gmLlPCg~D 179 (615)
T KOG3540|consen 171 GMLLPCGLD 179 (615)
T ss_pred cceeccccc
Confidence 444444443
No 295
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=57.69 E-value=14 Score=29.90 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=19.7
Q ss_pred HHHHhhhccceeeEeecCCcchhHHHH
Q psy9732 117 SEIQNKKMHNKMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 117 F~~~~~~~~~~l~~~yg~a~W~~~~i~ 143 (250)
|+..+.....+++.|| ++||.+|.-
T Consensus 13 ~~~a~~~gk~vvV~F~--A~WC~~C~~ 37 (142)
T cd02950 13 PEVALSNGKPTLVEFY--ADWCTVCQE 37 (142)
T ss_pred HHHHHhCCCEEEEEEE--CCcCHHHHH
Confidence 4455566678999999 999999983
No 296
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.66 E-value=13 Score=29.37 Aligned_cols=45 Identities=18% Similarity=0.106 Sum_probs=25.1
Q ss_pred ehhhhHHHHHHhhh-ccce-eeEeecCCcchhHHHHHHHHHHHHHHHHHHHH
Q psy9732 110 CNVLMLISEIQNKK-MHNK-MMEDYGIPAWGSYTIFAMVTIMIGALLGLLLV 159 (250)
Q Consensus 110 ~~~~~~~F~~~~~~-~~~~-l~~~yg~a~W~~~~i~~~~t~~~g~~lgl~~v 159 (250)
+.+.++|....+.. .-.| +-.|.|.+||+-. ..+++|+..|++.|
T Consensus 46 ~klssefIsGilVGa~iG~llD~~agTsPwglI-----v~lllGf~AG~lnv 92 (116)
T COG5336 46 FKLSSEFISGILVGAGIGWLLDKFAGTSPWGLI-----VFLLLGFGAGVLNV 92 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH-----HHHHHHHHHHHHHH
Confidence 45666666633322 2223 3345678999732 34666777777666
No 297
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=56.74 E-value=18 Score=26.44 Aligned_cols=23 Identities=22% Similarity=0.577 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q psy9732 139 SYTIFAMVTIMIGALLGLLLVFI 161 (250)
Q Consensus 139 ~~~i~~~~t~~~g~~lgl~~v~~ 161 (250)
.-.++.+..+++|+++|+.++++
T Consensus 57 ~~~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 57 KRALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555677899999988876
No 298
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=56.63 E-value=18 Score=26.17 Aligned_cols=26 Identities=12% Similarity=-0.020 Sum_probs=19.5
Q ss_pred HHHHHhhhc--cceeeEeecCCcchhHHHH
Q psy9732 116 ISEIQNKKM--HNKMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 116 ~F~~~~~~~--~~~l~~~yg~a~W~~~~i~ 143 (250)
.|+..+... ..+++.|| ++||..|.-
T Consensus 4 ~~~~~~~~~~~~~v~v~f~--~~~C~~C~~ 31 (97)
T cd02984 4 EFEELLKSDASKLLVLHFW--APWAEPCKQ 31 (97)
T ss_pred HHHHHHhhCCCCEEEEEEE--CCCCHHHHH
Confidence 355555544 77899998 999999983
No 299
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=56.18 E-value=18 Score=25.59 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=22.4
Q ss_pred hHHHHHHhhhccceeeEeecCCcchhHHHHHH
Q psy9732 114 MLISEIQNKKMHNKMMEDYGIPAWGSYTIFAM 145 (250)
Q Consensus 114 ~~~F~~~~~~~~~~l~~~yg~a~W~~~~i~~~ 145 (250)
...|...+.+...+++.|| ++||.+|.-..
T Consensus 5 ~~~~~~~i~~~~~~~v~f~--~~~C~~C~~~~ 34 (101)
T cd02961 5 DDNFDELVKDSKDVLVEFY--APWCGHCKALA 34 (101)
T ss_pred HHHHHHHHhCCCcEEEEEE--CCCCHHHHhhh
Confidence 3456666666668899998 99999988543
No 300
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=56.01 E-value=8.1 Score=30.91 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=28.2
Q ss_pred eeEeecCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccccCCcc
Q psy9732 128 MMEDYGIPAWGSYTIFAMVTIMIGALLGLLLVFIIDQIYPPSAV 171 (250)
Q Consensus 128 l~~~yg~a~W~~~~i~~~~t~~~g~~lgl~~v~~~d~~~~~k~~ 171 (250)
+.+.+|+++|..-+++.+++++-+..+|+++=+++-++.|+++.
T Consensus 25 iA~y~gi~~~~VRl~~vl~~~~~~~~~~~~~Yi~l~~~lp~~P~ 68 (118)
T PRK10697 25 IAHYFDVPVKLVRIIVVLSIFFGLFVFTLVAYIILSFALDPMPD 68 (118)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHhccCCcc
Confidence 45667889988887766555443334555555566667777764
No 301
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=55.74 E-value=14 Score=28.36 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy9732 147 TIMIGALLGLLLVFIID 163 (250)
Q Consensus 147 t~~~g~~lgl~~v~~~d 163 (250)
.|+++++|.++|++..+
T Consensus 6 ~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSE 22 (95)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 35556666666655433
No 302
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=55.57 E-value=37 Score=22.99 Aligned_cols=56 Identities=13% Similarity=0.152 Sum_probs=34.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCC----ccccccCcccccCceeecCEe
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS----PGLSGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~----~~l~~rf~I~~~PT~i~~Gk~ 68 (250)
..|+.+.|+.|++..-.++... ..+....+|.... +.+.+...-..+|++..+|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~ 61 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLG-----IPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRV 61 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcC-----CCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEE
Confidence 4578899999999876666543 2344555664321 223333344578998776543
No 303
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.54 E-value=13 Score=33.05 Aligned_cols=40 Identities=13% Similarity=0.078 Sum_probs=30.2
Q ss_pred cccccCcccccCceeecCEeeeeeeeeeccccChHHH--HhhhhccCC
Q psy9732 49 GLSGRFMVTALPTIFQEGIRGNIERGYFNIAKEIEEL--FRVEHNFGQ 94 (250)
Q Consensus 49 ~l~~rf~I~~~PT~i~~Gk~~~~~~~y~~G~~s~~~l--fI~~~~~~~ 94 (250)
..+++.||+++|||+|+|+ +.. +|..+.+.+ -|.+..+..
T Consensus 175 ~~A~e~gI~gVP~fv~d~~-----~~V-~Gaq~~~v~~~al~~~~~~~ 216 (225)
T COG2761 175 AAAQEMGIRGVPTFVFDGK-----YAV-SGAQPYDVLEDALRQLLAEK 216 (225)
T ss_pred HHHHHCCCccCceEEEcCc-----Eee-cCCCCHHHHHHHHHHHHhcc
Confidence 5688999999999999443 345 899999998 665554433
No 304
>KOG1731|consensus
Probab=55.26 E-value=3.5 Score=41.24 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=40.1
Q ss_pred CCCcceeehhhhHHHHHHh-hhccceeeEeecCCcchhHHHHHHHHHHHHH------HHHHHHHHhhhcc
Q psy9732 103 EHSTTIQCNVLMLISEIQN-KKMHNKMMEDYGIPAWGSYTIFAMVTIMIGA------LLGLLLVFIIDQI 165 (250)
Q Consensus 103 ~~Pss~~~~~~~~~F~~~~-~~~~~~l~~~yg~a~W~~~~i~~~~t~~~g~------~lgl~~v~~~d~~ 165 (250)
.+|...++.+....|+..+ .+...+|++|| +.||++|. +.|-..-.+ .-.++.|..+||-
T Consensus 35 y~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy--~swCGhCr-~FAPtfk~~A~dl~~W~~vv~vaaVdCA 101 (606)
T KOG1731|consen 35 YSPDDPIIELDVDTFNAAVFGSRKAKLVEFY--NSWCGHCR-AFAPTFKKFAKDLEKWRPVVRVAAVDCA 101 (606)
T ss_pred cCCCCCeEEeehhhhHHHhcccchhHHHHHH--Hhhhhhhh-hcchHHHHHHHHHhcccceeEEEEeecc
Confidence 4566778888888899554 44468999999 99999998 333322222 1233556667774
No 305
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=54.92 E-value=39 Score=25.11 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy9732 141 TIFAMVTIMIGALLGLLLVFIIDQIYPPS 169 (250)
Q Consensus 141 ~i~~~~t~~~g~~lgl~~v~~~d~~~~~k 169 (250)
.+++++++++.|++-++++-++..++.+.
T Consensus 11 ~v~GM~~VF~fL~lLi~~i~~~~~~~~~~ 39 (82)
T TIGR01195 11 TVLGMGIVFLFLSLLIYAVRGMGKVVGRK 39 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555555554444444443444444333
No 306
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=54.92 E-value=9.3 Score=31.88 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=24.5
Q ss_pred cccccCcccccCceeecCEeeeeeeeeeccccChHHH
Q psy9732 49 GLSGRFMVTALPTIFQEGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 49 ~l~~rf~I~~~PT~i~~Gk~~~~~~~y~~G~~s~~~l 85 (250)
..+.+.||.++|||+++|+. .. .|..+.+.|
T Consensus 166 ~~a~~~gv~G~Pt~vv~g~~-----~~-~G~~~~~~~ 196 (201)
T cd03024 166 ARARQLGISGVPFFVFNGKY-----AV-SGAQPPEVF 196 (201)
T ss_pred HHHHHCCCCcCCEEEECCeE-----ee-cCCCCHHHH
Confidence 56778899999999997754 23 788887776
No 307
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=54.85 E-value=13 Score=27.85 Aligned_cols=26 Identities=12% Similarity=0.049 Sum_probs=19.3
Q ss_pred HHHHHhhhccceeeEeecCCcchhHHHHH
Q psy9732 116 ISEIQNKKMHNKMMEDYGIPAWGSYTIFA 144 (250)
Q Consensus 116 ~F~~~~~~~~~~l~~~yg~a~W~~~~i~~ 144 (250)
.|+.. +....+++.|| ++||.+|...
T Consensus 8 ~~~~~-~~~~~vlv~f~--a~wC~~C~~~ 33 (104)
T cd03000 8 SFKDV-RKEDIWLVDFY--APWCGHCKKL 33 (104)
T ss_pred hhhhh-ccCCeEEEEEE--CCCCHHHHhh
Confidence 35543 44567899999 9999999844
No 308
>PRK11677 hypothetical protein; Provisional
Probab=54.65 E-value=14 Score=30.19 Aligned_cols=20 Identities=15% Similarity=0.491 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9732 141 TIFAMVTIMIGALLGLLLVF 160 (250)
Q Consensus 141 ~i~~~~t~~~g~~lgl~~v~ 160 (250)
|+++++.+++|+++|.++.-
T Consensus 3 W~~a~i~livG~iiG~~~~R 22 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35667778888888887763
No 309
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=54.14 E-value=21 Score=27.48 Aligned_cols=25 Identities=4% Similarity=-0.270 Sum_probs=19.2
Q ss_pred HHhhhc-cceeeEeecCCcchhHHHHHH
Q psy9732 119 IQNKKM-HNKMMEDYGIPAWGSYTIFAM 145 (250)
Q Consensus 119 ~~~~~~-~~~l~~~yg~a~W~~~~i~~~ 145 (250)
...+.. +.+++.|+ ++||.+|.-..
T Consensus 8 ~a~~~~~k~vlv~f~--a~wC~~C~~~~ 33 (125)
T cd02951 8 EAAADGKKPLLLLFS--QPGCPYCDKLK 33 (125)
T ss_pred HHHHcCCCcEEEEEe--CCCCHHHHHHH
Confidence 445556 78899998 99999998443
No 310
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=53.52 E-value=31 Score=27.77 Aligned_cols=35 Identities=11% Similarity=0.329 Sum_probs=24.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP 48 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~ 48 (250)
+..|+.|+|+.|++....+++ .++.+-.+|..+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA-------HQLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------cCCCeEEEECCCCC
Confidence 346778999999997755553 24677777776554
No 311
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=51.68 E-value=10 Score=33.10 Aligned_cols=34 Identities=15% Similarity=0.024 Sum_probs=25.2
Q ss_pred ccccccCcccccCceee--cCEeeeeeeeeecc--ccChHHH
Q psy9732 48 PGLSGRFMVTALPTIFQ--EGIRGNIERGYFNI--AKEIEEL 85 (250)
Q Consensus 48 ~~l~~rf~I~~~PT~i~--~Gk~~~~~~~y~~G--~~s~~~l 85 (250)
..+++++++.++||+++ ||++ +....| ..+.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~----~~l~~g~y~~~~~~~ 201 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTM----YVLGTGAYFGSPDAW 201 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCce----EeccCCcccCCcHHH
Confidence 36788999999999999 9998 655455 3444444
No 312
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=51.11 E-value=25 Score=24.32 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q psy9732 148 IMIGALLGLLLV 159 (250)
Q Consensus 148 ~~~g~~lgl~~v 159 (250)
+++|+++|=+.+
T Consensus 11 iVlgvIigNia~ 22 (55)
T PF11446_consen 11 IVLGVIIGNIAA 22 (55)
T ss_pred HHHHHHHhHHHH
Confidence 555666665554
No 313
>KOG2652|consensus
Probab=49.83 E-value=18 Score=34.02 Aligned_cols=15 Identities=33% Similarity=0.862 Sum_probs=13.4
Q ss_pred CCCeeecCCCceeee
Q psy9732 233 NKPYLFNNNNNRLEW 247 (250)
Q Consensus 233 ~~~~~~~~~~~~~~~ 247 (250)
.|-|+|+--+...||
T Consensus 334 gkDY~F~KA~GeaEW 348 (348)
T KOG2652|consen 334 GKDYVFQKAQGEAEW 348 (348)
T ss_pred CceeEeeecccccCC
Confidence 578999999999998
No 314
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=49.51 E-value=35 Score=30.80 Aligned_cols=54 Identities=11% Similarity=-0.065 Sum_probs=32.4
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ 64 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~ 64 (250)
.+++++..-+.|||.|-..+=.+-.+-.++ +++.+.-.-.+... .-..+||++|
T Consensus 58 Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf--Gn~~l~~~~S~~~d------~~pn~Ptl~F 111 (249)
T PF06053_consen 58 GKPEVIFIGWEGCPYCAAESWALYIALSRF--GNFSLEYHYSDPYD------NYPNTPTLIF 111 (249)
T ss_pred CeeEEEEEecccCccchhhHHHHHHHHHhc--CCeeeEEeecCccc------CCCCCCeEEE
Confidence 467899999999999998764444444444 34433222222110 1147899999
No 315
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=48.89 E-value=30 Score=30.58 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=6.3
Q ss_pred eeEeeecccccccc
Q psy9732 217 PLRIQRTGYKKASY 230 (250)
Q Consensus 217 ~~~~~~~~~~~~~~ 230 (250)
|.--+.+|=.-++|
T Consensus 132 pvgT~Q~g~h~~~y 145 (217)
T PF07423_consen 132 PVGTEQTGEHVMTY 145 (217)
T ss_pred ccccccCCCccccc
Confidence 44444555433333
No 316
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=48.62 E-value=12 Score=30.76 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=22.5
Q ss_pred cccccCcccccCceeecCEeeeeeeeeeccccChHHH
Q psy9732 49 GLSGRFMVTALPTIFQEGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 49 ~l~~rf~I~~~PT~i~~Gk~~~~~~~y~~G~~s~~~l 85 (250)
..+.+.||.++|||+++|+. + .|....+.+
T Consensus 158 ~~a~~~gi~gvPtfvv~g~~------~-~G~~~l~~~ 187 (192)
T cd03022 158 EEAIARGVFGVPTFVVDGEM------F-WGQDRLDML 187 (192)
T ss_pred HHHHHcCCCcCCeEEECCee------e-cccccHHHH
Confidence 56778899999999998765 3 566655544
No 317
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=48.41 E-value=10 Score=32.25 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=23.3
Q ss_pred CCCCccccCceeeeeeeeEeeecccccccc
Q psy9732 201 RDDTGLIEGTVTTKVLPLRIQRTGYKKASY 230 (250)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (250)
++..++.-.+|---|+-.|+|-|+|.|.+|
T Consensus 59 ~e~~d~~~~~vvDIV~~frLqet~f~Kk~Y 88 (172)
T PTZ00151 59 VEGVDADVETVIDIVDAFKLQSTPFTKKEY 88 (172)
T ss_pred ccccccccEEEEEeeecCcceecCCCHHHH
Confidence 334555566777788999999999999876
No 318
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=48.22 E-value=39 Score=26.04 Aligned_cols=26 Identities=8% Similarity=-0.387 Sum_probs=20.8
Q ss_pred HHHHHHhhhccceeeEeecCCcchhHHH
Q psy9732 115 LISEIQNKKMHNKMMEDYGIPAWGSYTI 142 (250)
Q Consensus 115 ~~F~~~~~~~~~~l~~~yg~a~W~~~~i 142 (250)
..|...+.....+++.|| ++||+.|.
T Consensus 13 ~~~~~~i~~~~~vvV~f~--a~~c~~C~ 38 (113)
T cd02989 13 KEFFEIVKSSERVVCHFY--HPEFFRCK 38 (113)
T ss_pred HHHHHHHhCCCcEEEEEE--CCCCccHH
Confidence 445666666678999999 99999998
No 319
>PLN02309 5'-adenylylsulfate reductase
Probab=47.98 E-value=24 Score=34.51 Aligned_cols=33 Identities=9% Similarity=0.027 Sum_probs=25.0
Q ss_pred eeehhhhHHHHHHh---hhccceeeEeecCCcchhHHH
Q psy9732 108 IQCNVLMLISEIQN---KKMHNKMMEDYGIPAWGSYTI 142 (250)
Q Consensus 108 ~~~~~~~~~F~~~~---~~~~~~l~~~yg~a~W~~~~i 142 (250)
.+..+....|+.++ .....+++.|| +|||.+|.
T Consensus 346 ~Vv~Lt~~nfe~ll~~~~~~k~vlV~Fy--ApWC~~Cq 381 (457)
T PLN02309 346 NVVALSRAGIENLLKLENRKEPWLVVLY--APWCPFCQ 381 (457)
T ss_pred CcEECCHHHHHHHHHhhcCCCeEEEEEE--CCCChHHH
Confidence 34456677777555 35667999999 99999998
No 320
>KOG2507|consensus
Probab=47.00 E-value=69 Score=31.27 Aligned_cols=79 Identities=13% Similarity=0.197 Sum_probs=55.7
Q ss_pred CCcEEEEEECCCCHHHHHHHH-HHHHHH-HHhCCCCeEEEEEECcC--CccccccCcccccCceee---cCEeeeeeeee
Q psy9732 3 QGEWMVEFFAPWCPACKQMEK-VWQEYS-GWAQDLNINVAQVDVTV--SPGLSGRFMVTALPTIFQ---EGIRGNIERGY 75 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P-~~e~la-~~~k~~~v~va~VD~d~--~~~l~~rf~I~~~PT~i~---~Gk~~~~~~~y 75 (250)
+|.+||.|-+-.-....+|.. .|.+-. ...-...+.-++|+... ..+++.-|.+..+|.++| .|.+ ...
T Consensus 18 kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtp----Lev 93 (506)
T KOG2507|consen 18 KKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTP----LEV 93 (506)
T ss_pred CCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCce----eEE
Confidence 577899999999999999883 554432 22212235556666533 346677788999999998 8888 565
Q ss_pred eccccChHHH
Q psy9732 76 FNIAKEIEEL 85 (250)
Q Consensus 76 ~~G~~s~~~l 85 (250)
..|..++++|
T Consensus 94 itg~v~adeL 103 (506)
T KOG2507|consen 94 ITGFVTADEL 103 (506)
T ss_pred eeccccHHHH
Confidence 5899888887
No 321
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=46.84 E-value=14 Score=30.42 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=24.5
Q ss_pred ccccccCcccccCceeecCEeeeeeeeeeccccChHHH
Q psy9732 48 PGLSGRFMVTALPTIFQEGIRGNIERGYFNIAKEIEEL 85 (250)
Q Consensus 48 ~~l~~rf~I~~~PT~i~~Gk~~~~~~~y~~G~~s~~~l 85 (250)
...+.++||.++||++++|+. .+ .|....+.|
T Consensus 157 ~~~a~~~gv~GvP~~vv~g~~-----~~-~G~~~~~~l 188 (193)
T PF01323_consen 157 TAEARQLGVFGVPTFVVNGKY-----RF-FGADRLDEL 188 (193)
T ss_dssp HHHHHHTTCSSSSEEEETTTE-----EE-ESCSSHHHH
T ss_pred HHHHHHcCCcccCEEEECCEE-----EE-ECCCCHHHH
Confidence 366788999999999997752 23 687777766
No 322
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=46.64 E-value=49 Score=24.99 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=11.9
Q ss_pred HHHHHHHHH--HHhhhccccC
Q psy9732 150 IGALLGLLL--VFIIDQIYPP 168 (250)
Q Consensus 150 ~g~~lgl~~--v~~~d~~~~~ 168 (250)
.||++|.++ |||..+++|.
T Consensus 24 YGLf~GAIFQliCilAiI~~~ 44 (85)
T PF06783_consen 24 YGLFVGAIFQLICILAIILPI 44 (85)
T ss_pred HHHHHHHHHHHHHHHheeeec
Confidence 366666654 6677777763
No 323
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.60 E-value=20 Score=31.31 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy9732 141 TIFAMVTIMIGALLGLLLVFI 161 (250)
Q Consensus 141 ~i~~~~t~~~g~~lgl~~v~~ 161 (250)
++.+.+.+++|+++||++.-+
T Consensus 174 f~~Gg~v~~~GlllGlilp~l 194 (206)
T PRK10884 174 FMYGGGVAGIGLLLGLLLPHL 194 (206)
T ss_pred HHHchHHHHHHHHHHHHhccc
Confidence 455777788899999988743
No 324
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=46.09 E-value=23 Score=25.80 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=29.6
Q ss_pred eeeEeecCCcchhHHHHHHHHHHHH-HHHHHHHHHhhhccccCCcc
Q psy9732 127 KMMEDYGIPAWGSYTIFAMVTIMIG-ALLGLLLVFIIDQIYPPSAV 171 (250)
Q Consensus 127 ~l~~~yg~a~W~~~~i~~~~t~~~g-~~lgl~~v~~~d~~~~~k~~ 171 (250)
-+.++||+.++..-.++.+.+++-+ ...|+++=++.-.+.|+.+.
T Consensus 20 Gla~yf~id~tlVRll~vl~~~~~~~~~~~ii~Yiia~~imP~~~~ 65 (70)
T COG1983 20 GLAEYFGIDPTLVRLLFVLLTLFGGLTGFGIIAYIIAALIMPSEED 65 (70)
T ss_pred hHHHHhCCChHHHHHHHHHHHHHhcchhHHHHHHHHHHHHCCCCcc
Confidence 3556778888888888887777653 34445555566666766653
No 325
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=45.81 E-value=21 Score=24.67 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhhccc
Q psy9732 150 IGALLGLLLVFIIDQIY 166 (250)
Q Consensus 150 ~g~~lgl~~v~~~d~~~ 166 (250)
+-+++|+++--++-..+
T Consensus 9 IviVlgvIigNia~LK~ 25 (55)
T PF11446_consen 9 IVIVLGVIIGNIAALKY 25 (55)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 44444444444444444
No 326
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=45.69 E-value=33 Score=27.10 Aligned_cols=24 Identities=4% Similarity=0.016 Sum_probs=18.0
Q ss_pred HHHHhh--hccceeeEeecCCcchhHHH
Q psy9732 117 SEIQNK--KMHNKMMEDYGIPAWGSYTI 142 (250)
Q Consensus 117 F~~~~~--~~~~~l~~~yg~a~W~~~~i 142 (250)
|+..+. ....++++|+ ++||+.|.
T Consensus 5 ~~~~i~~~~~~~vVV~F~--A~WCgpCk 30 (114)
T cd02954 5 VDQAILSEEEKVVVIRFG--RDWDPVCM 30 (114)
T ss_pred HHHHHhccCCCEEEEEEE--CCCChhHH
Confidence 444443 3456899999 99999998
No 327
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.71 E-value=26 Score=28.56 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy9732 141 TIFAMVTIMIGALLGLLLVFI 161 (250)
Q Consensus 141 ~i~~~~t~~~g~~lgl~~v~~ 161 (250)
|+.++..+++|+++|.+++-+
T Consensus 8 W~~a~igLvvGi~IG~li~Rl 28 (138)
T COG3105 8 WEYALIGLVVGIIIGALIARL 28 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666677888888876643
No 328
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=44.16 E-value=39 Score=25.16 Aligned_cols=40 Identities=18% Similarity=0.108 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee---cCEe
Q psy9732 24 VWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ---EGIR 68 (250)
Q Consensus 24 ~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~---~Gk~ 68 (250)
.+.++++.++-..+.+.. +..++++|++.++|+.++ +|+.
T Consensus 66 ~~~~~~~~~~~~~~p~~~-----~~~~~~~~~~~~~P~~~vid~~G~v 108 (114)
T cd02967 66 EHQRFLKKHGLEAFPYVL-----SAELGMAYQVSKLPYAVLLDEAGVI 108 (114)
T ss_pred HHHHHHHHhCCCCCcEEe-----cHHHHhhcCCCCcCeEEEECCCCeE
Confidence 455566655421233221 235789999999999888 6765
No 329
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=43.80 E-value=7.7 Score=37.74 Aligned_cols=7 Identities=0% Similarity=-0.420 Sum_probs=3.4
Q ss_pred ccCceee
Q psy9732 58 ALPTIFQ 64 (250)
Q Consensus 58 ~~PT~i~ 64 (250)
..|.+.|
T Consensus 267 ~~~~l~f 273 (439)
T PF02480_consen 267 NGVDLQF 273 (439)
T ss_dssp TSSSEEE
T ss_pred CCcceEe
Confidence 3445555
No 330
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=43.45 E-value=22 Score=24.93 Aligned_cols=40 Identities=30% Similarity=0.506 Sum_probs=25.3
Q ss_pred eeEeecCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy9732 128 MMEDYGIPAWGSYTIFAMVTIMIGALLGLLLVFIIDQIYPPS 169 (250)
Q Consensus 128 l~~~yg~a~W~~~~i~~~~t~~~g~~lgl~~v~~~d~~~~~k 169 (250)
+.+.+|+++|..-.+|.+++++.|. |+++=++.-.+.|.+
T Consensus 20 lA~~~gid~~~vRl~~v~l~~~~~~--~~l~Y~~~w~~lP~~ 59 (61)
T PF04024_consen 20 LAEYFGIDPTLVRLIFVVLTFFTGG--GILLYLILWLLLPKE 59 (61)
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHhH--HHHHHHHHHHHcCCC
Confidence 4456788888888888887776655 444434444455554
No 331
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=43.20 E-value=72 Score=22.38 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=35.4
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC----CccccccCcccccCceeecCEe
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV----SPGLSGRFMVTALPTIFQEGIR 68 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~----~~~l~~rf~I~~~PT~i~~Gk~ 68 (250)
..|+.+.|+.|++.+-.+++. +..+.+..+|... .+.+.+-..-..+|++..+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~-----gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK-----GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc-----CCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEE
Confidence 567889999998887555443 3345566676532 2234444556688988666543
No 332
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=42.90 E-value=43 Score=27.16 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=17.6
Q ss_pred CCccccccCcccccCceee
Q psy9732 46 VSPGLSGRFMVTALPTIFQ 64 (250)
Q Consensus 46 ~~~~l~~rf~I~~~PT~i~ 64 (250)
=+|.+.++|+|+.+|+|++
T Consensus 59 IdP~lF~~f~I~~VPa~V~ 77 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVV 77 (130)
T ss_pred EChHHHhhcCceEcCEEEE
Confidence 3689999999999999999
No 333
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=40.80 E-value=88 Score=23.48 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy9732 140 YTIFAMVTIMIGALLGLLLVFIIDQIYPPS 169 (250)
Q Consensus 140 ~~i~~~~t~~~g~~lgl~~v~~~d~~~~~k 169 (250)
+.+++++++++-+++-++++-++..++|..
T Consensus 14 lm~~GM~~VF~fL~lLi~~~~l~~~~~~~~ 43 (85)
T PRK03814 14 LMLTGMGVVFIFLTLLVYLVQLMSKLIPQE 43 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345666666655555445554555556443
No 334
>KOG4032|consensus
Probab=40.77 E-value=11 Score=32.39 Aligned_cols=6 Identities=17% Similarity=0.457 Sum_probs=2.4
Q ss_pred ccCcee
Q psy9732 58 ALPTIF 63 (250)
Q Consensus 58 ~~PT~i 63 (250)
++|.+.
T Consensus 23 ~W~al~ 28 (184)
T KOG4032|consen 23 SWPALR 28 (184)
T ss_pred ccHHHH
Confidence 344443
No 335
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=40.49 E-value=37 Score=26.11 Aligned_cols=21 Identities=10% Similarity=-0.053 Sum_probs=15.0
Q ss_pred hhccceeeEeecCCcchhHHHHH
Q psy9732 122 KKMHNKMMEDYGIPAWGSYTIFA 144 (250)
Q Consensus 122 ~~~~~~l~~~yg~a~W~~~~i~~ 144 (250)
+....+++.++ ++||.+|...
T Consensus 20 ~~~~~vvv~f~--a~wC~~C~~~ 40 (113)
T cd02975 20 KNPVDLVVFSS--KEGCQYCEVT 40 (113)
T ss_pred CCCeEEEEEeC--CCCCCChHHH
Confidence 44555667776 9999999833
No 336
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.49 E-value=28 Score=27.22 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCc-ccccCce---eecCEe
Q psy9732 12 APWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFM-VTALPTI---FQEGIR 68 (250)
Q Consensus 12 ApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~-I~~~PT~---i~~Gk~ 68 (250)
.|-||.+.+....+..... +.++.||+-+++++.+... ...+||| +++|++
T Consensus 27 ~P~CGFS~~~vqiL~~~g~------v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEf 81 (105)
T COG0278 27 FPQCGFSAQAVQILSACGV------VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEF 81 (105)
T ss_pred CCCCCccHHHHHHHHHcCC------cceeEEeeccCHHHHhccHhhcCCCCCceeeECCEE
Confidence 5889999988766654321 6789999988887765443 2356665 449887
No 337
>PHA02844 putative transmembrane protein; Provisional
Probab=40.46 E-value=41 Score=24.72 Aligned_cols=24 Identities=8% Similarity=-0.123 Sum_probs=17.3
Q ss_pred eehhhhHHHHHHhhhccceeeEee
Q psy9732 109 QCNVLMLISEIQNKKMHNKMMEDY 132 (250)
Q Consensus 109 ~~~~~~~~F~~~~~~~~~~l~~~y 132 (250)
.|...++.|+.+++-.+.+|.+.|
T Consensus 12 FmsS~DdDFnnFI~vVksVLtd~~ 35 (75)
T PHA02844 12 FLSSENEDFNNFIDVVKSVLSDDY 35 (75)
T ss_pred hcCCchHHHHHHHHHHHHHHcCCC
Confidence 455566678888877778888874
No 338
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.93 E-value=44 Score=30.97 Aligned_cols=32 Identities=9% Similarity=-0.030 Sum_probs=23.4
Q ss_pred eehhhhHHHH-HHhh-hc-cceeeEeecCCcchhHHH
Q psy9732 109 QCNVLMLISE-IQNK-KM-HNKMMEDYGIPAWGSYTI 142 (250)
Q Consensus 109 ~~~~~~~~F~-~~~~-~~-~~~l~~~yg~a~W~~~~i 142 (250)
....+...|. .+++ +. ..+++.|| +|||+.|.
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fW--ap~~~~c~ 59 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFW--APWCGPCK 59 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEec--CCCCchHH
Confidence 4566666677 4443 33 47999999 99999988
No 339
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=39.72 E-value=1.3e+02 Score=22.58 Aligned_cols=78 Identities=9% Similarity=0.064 Sum_probs=47.7
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee-cC-----Eeeeeeeeee
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ-EG-----IRGNIERGYF 76 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~-~G-----k~~~~~~~y~ 76 (250)
+...+|-|+..--. .+...|.++|..+++ ++.|+...- ..++..+++ .|++++ .. +.......|
T Consensus 18 ~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~~---~~~~~~~~~--~~~ivl~~p~~~~~k~de~~~~y- 87 (104)
T cd03069 18 DDASVVGFFEDEDS---KLLSEFLKAADTLRE-SFRFAHTSD---KQLLEKYGY--GEGVVLFRPPRLSNKFEDSSVKF- 87 (104)
T ss_pred CCcEEEEEEcCCCc---hHHHHHHHHHHhhhh-cCEEEEECh---HHHHHhcCC--CCceEEEechhhhcccCcccccc-
Confidence 44567777765433 466788999999864 577754433 355677788 465554 21 110111346
Q ss_pred ccccChHHH--Hhhhh
Q psy9732 77 NIAKEIEEL--FRVEH 90 (250)
Q Consensus 77 ~G~~s~~~l--fI~~~ 90 (250)
.|..+.++| ||..+
T Consensus 88 ~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 88 DGDLDSSKIKKFIREN 103 (104)
T ss_pred cCcCCHHHHHHHHHhh
Confidence 888888888 88654
No 340
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=38.85 E-value=45 Score=26.21 Aligned_cols=26 Identities=8% Similarity=-0.287 Sum_probs=20.1
Q ss_pred HHHHHhhhccceeeEeecCCcchhHHHH
Q psy9732 116 ISEIQNKKMHNKMMEDYGIPAWGSYTIF 143 (250)
Q Consensus 116 ~F~~~~~~~~~~l~~~yg~a~W~~~~i~ 143 (250)
-|...+.+....++.|+ ++||.||-.
T Consensus 15 ~~~~~i~~~~~~iv~f~--~~~Cp~C~~ 40 (122)
T TIGR01295 15 RALEALDKKETATFFIG--RKTCPYCRK 40 (122)
T ss_pred HHHHHHHcCCcEEEEEE--CCCChhHHH
Confidence 35566666777788888 999999983
No 341
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=38.61 E-value=9.5 Score=37.71 Aligned_cols=11 Identities=18% Similarity=0.610 Sum_probs=0.0
Q ss_pred cCCcchhHHHH
Q psy9732 133 GIPAWGSYTIF 143 (250)
Q Consensus 133 g~a~W~~~~i~ 143 (250)
+.+.|..+..+
T Consensus 447 ~~~~W~~~~~~ 457 (501)
T PF00974_consen 447 WFSNWGEWLSI 457 (501)
T ss_dssp -----------
T ss_pred ccccHHHHHHH
Confidence 34678766543
No 342
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=38.25 E-value=42 Score=26.61 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=15.6
Q ss_pred ccceeeEeecCC-------cchhHHHHH
Q psy9732 124 MHNKMMEDYGIP-------AWGSYTIFA 144 (250)
Q Consensus 124 ~~~~l~~~yg~a-------~W~~~~i~~ 144 (250)
...+++.|| + +||+.|...
T Consensus 21 ~~~vvV~F~--A~~~~~~~~WC~pCr~~ 46 (119)
T cd02952 21 GKPIFILFY--GDKDPDGQSWCPDCVKA 46 (119)
T ss_pred CCeEEEEEE--ccCCCCCCCCCHhHHhh
Confidence 356899998 8 999999844
No 343
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=38.21 E-value=38 Score=31.90 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=8.4
Q ss_pred CcchhHHHHHHHHHHH
Q psy9732 135 PAWGSYTIFAMVTIMI 150 (250)
Q Consensus 135 a~W~~~~i~~~~t~~~ 150 (250)
.-|.++-++.+....+
T Consensus 333 kcwisl~i~~iLl~aL 348 (395)
T COG5058 333 KCWISLPIVFILLQAL 348 (395)
T ss_pred ccchHHHHHHHHHHHH
Confidence 5577775555433333
No 344
>PRK10132 hypothetical protein; Provisional
Probab=37.47 E-value=32 Score=27.03 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=12.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHH
Q psy9732 135 PAWGSYTIFAMVTIMIGALLGLLL 158 (250)
Q Consensus 135 a~W~~~~i~~~~t~~~g~~lgl~~ 158 (250)
.||.+..|.+ ++|+++|+++
T Consensus 85 ~Pw~svgiaa----gvG~llG~Ll 104 (108)
T PRK10132 85 RPWCSVGTAA----AVGIFIGALL 104 (108)
T ss_pred CcHHHHHHHH----HHHHHHHHHH
Confidence 5898876533 3566666654
No 345
>KOG1832|consensus
Probab=36.83 E-value=18 Score=38.54 Aligned_cols=8 Identities=13% Similarity=0.356 Sum_probs=4.0
Q ss_pred CCCHHHHH
Q psy9732 13 PWCPACKQ 20 (250)
Q Consensus 13 pWC~~Ck~ 20 (250)
..|.+|+.
T Consensus 1214 qT~~~l~t 1221 (1516)
T KOG1832|consen 1214 QTCSPLQT 1221 (1516)
T ss_pred ccCcHHHH
Confidence 34555554
No 346
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=36.00 E-value=48 Score=34.64 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q psy9732 141 TIFAMVTIMIGALLGLLLVFIIDQIY 166 (250)
Q Consensus 141 ~i~~~~t~~~g~~lgl~~v~~~d~~~ 166 (250)
.+|.+++++..+++.++|.|++-|+|
T Consensus 272 T~fLl~ILG~~~livl~lL~vLl~yC 297 (807)
T PF10577_consen 272 TVFLLAILGGTALIVLILLCVLLCYC 297 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445545444444445555554545
No 347
>PF15179 Myc_target_1: Myc target protein 1
Probab=35.67 E-value=55 Score=28.29 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhhhccccCCc
Q psy9732 147 TIMIGALLGLLLVFIIDQIYPPSA 170 (250)
Q Consensus 147 t~~~g~~lgl~~v~~~d~~~~~k~ 170 (250)
.+++||++|.++-++.-|+..+|+
T Consensus 28 Sm~iGLviG~li~~LltwlSRRRA 51 (197)
T PF15179_consen 28 SMAIGLVIGALIWALLTWLSRRRA 51 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 345566666655555555554444
No 348
>PHA02975 hypothetical protein; Provisional
Probab=35.45 E-value=63 Score=23.41 Aligned_cols=23 Identities=4% Similarity=-0.305 Sum_probs=16.1
Q ss_pred eehhhhHHHHHHhhhccceeeEe
Q psy9732 109 QCNVLMLISEIQNKKMHNKMMED 131 (250)
Q Consensus 109 ~~~~~~~~F~~~~~~~~~~l~~~ 131 (250)
.|...++.|+.+++-...+|++.
T Consensus 12 FmsS~DdDF~nFI~vVksVLtdk 34 (69)
T PHA02975 12 FLESNDSDFEDFIDTIMHVLTGK 34 (69)
T ss_pred hcCCChHHHHHHHHHHHHHHcCC
Confidence 34555666777777777778776
No 349
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=35.21 E-value=48 Score=27.21 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=24.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhC
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQ 33 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k 33 (250)
+..|+-+.||.|-...+.+.++.+.+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 567889999999999999999999984
No 350
>PRK11246 hypothetical protein; Provisional
Probab=35.07 E-value=67 Score=28.43 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhhh
Q psy9732 148 IMIGALLGLLLVFIID 163 (250)
Q Consensus 148 ~~~g~~lgl~~v~~~d 163 (250)
+++.+++|++|....-
T Consensus 169 ll~al~iG~lL~~~l~ 184 (218)
T PRK11246 169 LLLALAIGIVLTRTLL 184 (218)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445566666665433
No 351
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=34.93 E-value=91 Score=25.94 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=33.1
Q ss_pred CCcEEEEEECCCC-HHHHHHHHHHHHHHHHhC--CCCeEEEEEECcCC
Q psy9732 3 QGEWMVEFFAPWC-PACKQMEKVWQEYSGWAQ--DLNINVAQVDVTVS 47 (250)
Q Consensus 3 ~g~~lV~FYApWC-~~Ck~l~P~~e~la~~~k--~~~v~va~VD~d~~ 47 (250)
.++++|.|.-+.| ..|-.+...+.++.+.+. +.++.+..|.+|-.
T Consensus 52 Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 52 GKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp TSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred CCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 4677899998999 569888888888777664 23688888888743
No 352
>PHA03281 envelope glycoprotein E; Provisional
Probab=34.93 E-value=30 Score=34.63 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=12.3
Q ss_pred cCEeeeeeeeeeccccChHHH--Hhhhhc
Q psy9732 65 EGIRGNIERGYFNIAKEIEEL--FRVEHN 91 (250)
Q Consensus 65 ~Gk~~~~~~~y~~G~~s~~~l--fI~~~~ 91 (250)
||.+ ..-.| .=-.+.+.+ -+.++.
T Consensus 497 NGHV--eAWtY-tlvSTad~fvNvV~d~~ 522 (642)
T PHA03281 497 NGHV--EAVAY-TVVSTIDHFVNAIEEHG 522 (642)
T ss_pred CCee--eeeEE-EEEehHHhhhhhehhcC
Confidence 7776 22334 334555666 555553
No 353
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=34.75 E-value=38 Score=26.91 Aligned_cols=28 Identities=4% Similarity=-0.197 Sum_probs=21.0
Q ss_pred HHHHhhhccceeeEeecCCcchhHHHHHHH
Q psy9732 117 SEIQNKKMHNKMMEDYGIPAWGSYTIFAMV 146 (250)
Q Consensus 117 F~~~~~~~~~~l~~~yg~a~W~~~~i~~~~ 146 (250)
+....+..+.+|+.++ ++||.+|..--.
T Consensus 8 l~~Ak~~~KpVll~f~--a~WC~~Ck~me~ 35 (124)
T cd02955 8 FEKARREDKPIFLSIG--YSTCHWCHVMEH 35 (124)
T ss_pred HHHHHHcCCeEEEEEc--cCCCHhHHHHHH
Confidence 4555666778899998 999999984433
No 354
>PRK00523 hypothetical protein; Provisional
Probab=34.61 E-value=52 Score=24.09 Aligned_cols=14 Identities=14% Similarity=0.653 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q psy9732 146 VTIMIGALLGLLLV 159 (250)
Q Consensus 146 ~t~~~g~~lgl~~v 159 (250)
..+++|++.|+++.
T Consensus 13 ~~li~G~~~Gffia 26 (72)
T PRK00523 13 PLLIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 33556777776654
No 355
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=34.49 E-value=16 Score=30.72 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=14.3
Q ss_pred cccccCcccccCceee
Q psy9732 49 GLSGRFMVTALPTIFQ 64 (250)
Q Consensus 49 ~l~~rf~I~~~PT~i~ 64 (250)
.++++++|+++||+++
T Consensus 138 ~la~~m~I~~~Ptlvi 153 (176)
T PF13743_consen 138 QLAREMGITGFPTLVI 153 (176)
T ss_dssp HHHHHTT-SSSSEEEE
T ss_pred HHHHHcCCCCCCEEEE
Confidence 8899999999999999
No 356
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=33.93 E-value=50 Score=31.36 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=23.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy9732 136 AWGSYTIFAMVTIMIGALLGLLLVFIIDQIY 166 (250)
Q Consensus 136 ~W~~~~i~~~~t~~~g~~lgl~~v~~~d~~~ 166 (250)
.++...++.++.+++|+++|+.++++.+.+-
T Consensus 392 ~~P~~~~~l~~~~~~Gl~lg~~~~~l~e~ld 422 (444)
T TIGR03017 392 SSPRLLLNLVLSIFLGMLLGIGFAFLAELMD 422 (444)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555566666678889999999999888754
No 357
>PRK10404 hypothetical protein; Provisional
Probab=33.02 E-value=42 Score=26.00 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=12.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHH
Q psy9732 135 PAWGSYTIFAMVTIMIGALLGLLL 158 (250)
Q Consensus 135 a~W~~~~i~~~~t~~~g~~lgl~~ 158 (250)
.||-+..+. .++|+++|+++
T Consensus 79 ~Pw~avGia----agvGlllG~Ll 98 (101)
T PRK10404 79 KPWQGIGVG----AAVGLVLGLLL 98 (101)
T ss_pred CcHHHHHHH----HHHHHHHHHHH
Confidence 589876543 33666777664
No 358
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=32.89 E-value=56 Score=25.89 Aligned_cols=33 Identities=9% Similarity=-0.218 Sum_probs=20.2
Q ss_pred eehhhhHHHHHHhhhccceeeEeecCCcchh--HHH
Q psy9732 109 QCNVLMLISEIQNKKMHNKMMEDYGIPAWGS--YTI 142 (250)
Q Consensus 109 ~~~~~~~~F~~~~~~~~~~l~~~yg~a~W~~--~~i 142 (250)
+..++...|+..+.+....++.+| .|+||+ ||-
T Consensus 11 v~~lt~~nF~~~v~~~~~~vvv~f-~a~wc~p~~Ck 45 (120)
T cd03065 11 VIDLNEKNYKQVLKKYDVLCLLYH-EPVESDKEAQK 45 (120)
T ss_pred eeeCChhhHHHHHHhCCceEEEEE-CCCcCChhhCh
Confidence 345567788876666555444454 377774 476
No 359
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=31.79 E-value=31 Score=27.43 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=21.8
Q ss_pred cccCcccccCceeecCEeeeeeeeeeccccChH
Q psy9732 51 SGRFMVTALPTIFQEGIRGNIERGYFNIAKEIE 83 (250)
Q Consensus 51 ~~rf~I~~~PT~i~~Gk~~~~~~~y~~G~~s~~ 83 (250)
+-.+||+.+|.++||++. +-| |..+..
T Consensus 76 Aw~lgi~k~PAVVfD~~~----VVY--G~tDV~ 102 (114)
T PF07511_consen 76 AWSLGITKYPAVVFDDRY----VVY--GETDVA 102 (114)
T ss_pred HHHhCccccCEEEEcCCe----EEe--cccHHH
Confidence 557899999999998877 777 776654
No 360
>KOG1422|consensus
Probab=31.65 E-value=2.1e+02 Score=25.31 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccc-cCcccccCceeecCEeeeeeeeeeccccChHHH--Hhhhh
Q psy9732 14 WCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSG-RFMVTALPTIFQEGIRGNIERGYFNIAKEIEEL--FRVEH 90 (250)
Q Consensus 14 WC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~-rf~I~~~PT~i~~Gk~~~~~~~y~~G~~s~~~l--fI~~~ 90 (250)
.|+.||++.-.++ .++..+++-.||....++... -..-...|-+.++|+. ..+.+.| |+.+.
T Consensus 20 dcpf~qr~~m~L~-----~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~----------~tDs~~Ie~~Lee~ 84 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE-----LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKW----------VTDSDKIEEFLEEK 84 (221)
T ss_pred CChhHHHHHHHHH-----HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCce----------eccHHHHHHHHHHh
Confidence 4888888777666 233468899999988775553 3344566666666644 3444566 88777
Q ss_pred ccCCC
Q psy9732 91 NFGQS 95 (250)
Q Consensus 91 ~~~~~ 95 (250)
...+.
T Consensus 85 l~~p~ 89 (221)
T KOG1422|consen 85 LPPPK 89 (221)
T ss_pred cCCCC
Confidence 64443
No 361
>KOG2153|consensus
Probab=31.32 E-value=22 Score=36.16 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=11.5
Q ss_pred cccccCCCCCCCCCCcc-ccccccCCCCcc
Q psy9732 178 TKKKKGKDLGAKDSDVE-TDESDLRDDTGL 206 (250)
Q Consensus 178 ~~~k~~~~~~~~~~~~~-~~~~~~~~~~~~ 206 (250)
+++|+++.+.++|.||. +|.++++|++..
T Consensus 141 ~~~k~~e~~~~~~eed~~~e~~~e~de~~~ 170 (704)
T KOG2153|consen 141 QKAKKEERESDDDEEDLDEEDSDEDDETPN 170 (704)
T ss_pred hhhcccccccccchhcccchhccccccccC
Confidence 33344444444443343 333344444333
No 362
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=31.28 E-value=74 Score=23.82 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=5.6
Q ss_pred ccccccCCCCccc
Q psy9732 195 TDESDLRDDTGLI 207 (250)
Q Consensus 195 ~~~~~~~~~~~~~ 207 (250)
.|++|.|+|.+++
T Consensus 50 aEDSGnES~Gd~E 62 (81)
T PF00558_consen 50 AEDSGNESDGDEE 62 (81)
T ss_dssp TTCCHCTTTTCCH
T ss_pred cccCCCCCCCcHH
Confidence 3444444444433
No 363
>KOG0772|consensus
Probab=31.22 E-value=37 Score=33.88 Aligned_cols=10 Identities=30% Similarity=0.541 Sum_probs=4.3
Q ss_pred eeeeEeeecc
Q psy9732 215 VLPLRIQRTG 224 (250)
Q Consensus 215 ~~~~~~~~~~ 224 (250)
|..|+..-.|
T Consensus 170 Vsal~~Dp~G 179 (641)
T KOG0772|consen 170 VSALAVDPSG 179 (641)
T ss_pred EEEeeecCCC
Confidence 4444444433
No 364
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=30.95 E-value=56 Score=26.44 Aligned_cols=26 Identities=8% Similarity=-0.249 Sum_probs=19.2
Q ss_pred HHhhhccceeeEeecCCcchhHHHHHHH
Q psy9732 119 IQNKKMHNKMMEDYGIPAWGSYTIFAMV 146 (250)
Q Consensus 119 ~~~~~~~~~l~~~yg~a~W~~~~i~~~~ 146 (250)
...+....+|+.++ +.||.+|..---
T Consensus 18 ~Ak~~~Kpvmv~f~--sdwC~~Ck~l~k 43 (130)
T cd02960 18 KAKKSNKPLMVIHH--LEDCPHSQALKK 43 (130)
T ss_pred HHHHCCCeEEEEEe--CCcCHhHHHHHH
Confidence 44455677888888 999999984433
No 365
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=30.77 E-value=68 Score=25.04 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=24.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP 48 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~ 48 (250)
+..|..|.|+.|++....+++ .++.+-.+|.-+++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~-------~gi~~~~~d~~~~p 36 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA-------AGHEVEVRDLLTEP 36 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEeehhcCC
Confidence 356788999999998765554 24666677765544
No 366
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=30.77 E-value=93 Score=23.44 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=35.8
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccc----c----CcccccCceeecCEe
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSG----R----FMVTALPTIFQEGIR 68 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~----r----f~I~~~PT~i~~Gk~ 68 (250)
|..|.+.+.--++....=+.+-..+...+|.+-.+|++.+++..+ + .+-..+|.++++|+.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~ 70 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEY 70 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEE
Confidence 344444454455555554555555555568899999986653222 1 234677878776654
No 367
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=30.75 E-value=79 Score=24.59 Aligned_cols=24 Identities=21% Similarity=0.732 Sum_probs=15.8
Q ss_pred CcchhHHHHHHHHHH--HHHHHHHHHH
Q psy9732 135 PAWGSYTIFAMVTIM--IGALLGLLLV 159 (250)
Q Consensus 135 a~W~~~~i~~~~t~~--~g~~lgl~~v 159 (250)
.||--++| .+++++ +|++.||++.
T Consensus 16 ~PWeIfLI-tLasVvvavGl~aGLfFc 41 (106)
T PF14654_consen 16 KPWEIFLI-TLASVVVAVGLFAGLFFC 41 (106)
T ss_pred cchHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 78987755 444443 4888888665
No 368
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.59 E-value=47 Score=26.64 Aligned_cols=16 Identities=19% Similarity=0.665 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9732 145 MVTIMIGALLGLLLVF 160 (250)
Q Consensus 145 ~~t~~~g~~lgl~~v~ 160 (250)
++.+++|+++|+++.-
T Consensus 3 ~i~lvvG~iiG~~~~r 18 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGR 18 (128)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4457777777777653
No 369
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=30.41 E-value=95 Score=21.19 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=33.9
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC-CccccccCcccccCceee-cCEe
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV-SPGLSGRFMVTALPTIFQ-EGIR 68 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~-~~~l~~rf~I~~~PT~i~-~Gk~ 68 (250)
..|+.+.|+.|++..-.+..... +..+....+|... .+.+........+|++.. +|..
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~---~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~ 61 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGL---GDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEA 61 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCC---CCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCE
Confidence 35678899999987765554211 2234555555432 233444445568898877 6643
No 370
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=29.83 E-value=90 Score=24.34 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccC
Q psy9732 142 IFAMVTIMIGALLGLLLVFIIDQIYPP 168 (250)
Q Consensus 142 i~~~~t~~~g~~lgl~~v~~~d~~~~~ 168 (250)
.|.++.++..+++.|++++.+.|-...
T Consensus 18 ~~LVGVv~~al~~SlLIalaaKC~~~~ 44 (102)
T PF15176_consen 18 PFLVGVVVTALVTSLLIALAAKCPVWY 44 (102)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344455555666666666666665433
No 371
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=29.79 E-value=80 Score=24.25 Aligned_cols=6 Identities=33% Similarity=1.226 Sum_probs=2.5
Q ss_pred chhHHH
Q psy9732 137 WGSYTI 142 (250)
Q Consensus 137 W~~~~i 142 (250)
|-.+.|
T Consensus 49 WRN~GI 54 (103)
T PF06422_consen 49 WRNFGI 54 (103)
T ss_pred hhhHHH
Confidence 444433
No 372
>PF03286 Pox_Ag35: Pox virus Ag35 surface protein; InterPro: IPR004966 The Pox virus Ag35 surface protein is an evelope protein known as protein H5.; GO: 0019031 viral envelope
Probab=29.65 E-value=43 Score=29.23 Aligned_cols=8 Identities=38% Similarity=0.451 Sum_probs=3.9
Q ss_pred cccChHHH
Q psy9732 78 IAKEIEEL 85 (250)
Q Consensus 78 G~~s~~~l 85 (250)
|..+.++|
T Consensus 13 ~f~tl~ei 20 (200)
T PF03286_consen 13 NFKTLEEI 20 (200)
T ss_pred cceeHHHH
Confidence 34445555
No 373
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=29.22 E-value=22 Score=28.99 Aligned_cols=8 Identities=50% Similarity=0.617 Sum_probs=4.0
Q ss_pred HHHHhhhc
Q psy9732 157 LLVFIIDQ 164 (250)
Q Consensus 157 ~~v~~~d~ 164 (250)
+|+++.|.
T Consensus 89 LL~ll~Dl 96 (136)
T PF04871_consen 89 LLVLLGDL 96 (136)
T ss_pred HHHHHHhH
Confidence 44555554
No 374
>KOG3241|consensus
Probab=28.60 E-value=37 Score=29.30 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=11.3
Q ss_pred CCCCCCccccccccCCCCcccc
Q psy9732 187 GAKDSDVETDESDLRDDTGLIE 208 (250)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~ 208 (250)
+.+|+.+|+|.++++.|+++++
T Consensus 202 D~eD~~gD~e~~~edsde~~q~ 223 (227)
T KOG3241|consen 202 DEEDNVGDDEHDLEDSDENEQS 223 (227)
T ss_pred ccccccCccccccccccccccc
Confidence 3444444466666555555543
No 375
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=28.48 E-value=52 Score=24.57 Aligned_cols=20 Identities=50% Similarity=0.733 Sum_probs=12.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHH
Q psy9732 135 PAWGSYTIFAMVTIMIGALLGLLL 158 (250)
Q Consensus 135 a~W~~~~i~~~~t~~~g~~lgl~~ 158 (250)
.||.+..+. +++|+++|+++
T Consensus 72 ~P~~svgiA----agvG~llG~Ll 91 (94)
T PF05957_consen 72 NPWQSVGIA----AGVGFLLGLLL 91 (94)
T ss_pred ChHHHHHHH----HHHHHHHHHHH
Confidence 588775442 44667777654
No 376
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=28.31 E-value=2.7e+02 Score=21.18 Aligned_cols=79 Identities=11% Similarity=0.068 Sum_probs=44.4
Q ss_pred CcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee-----cCEeeeeeeeeecc
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ-----EGIRGNIERGYFNI 78 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~-----~Gk~~~~~~~y~~G 78 (250)
...+|-|+..-=+ .+...|.++|..+++ ++.|+...- ..+..++++..-|.+++ ..+...-...| .|
T Consensus 20 ~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd-d~~F~~t~~---~~~~~~~~~~~~~vvl~rp~~~~~k~e~~~~~~-~~ 91 (107)
T cd03068 20 DVIIIGVFSGEED---PAYQLYQDAANSLRE-DYKFHHTFD---SEIFKSLKVSPGQLVVFQPEKFQSKYEPKSHVL-NK 91 (107)
T ss_pred CEEEEEEECCCCC---HHHHHHHHHHHhccc-CCEEEEECh---HHHHHhcCCCCCceEEECcHHHhhhcCcceeee-ec
Confidence 4566667665433 456688899999864 577754333 35566677765444444 11111111456 66
Q ss_pred c-cChHH-H--Hhhhh
Q psy9732 79 A-KEIEE-L--FRVEH 90 (250)
Q Consensus 79 ~-~s~~~-l--fI~~~ 90 (250)
. .+..+ | ||.++
T Consensus 92 ~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 92 KDSTSEDELKDFFKEH 107 (107)
T ss_pred cccchHHHHHHHHhcC
Confidence 6 45544 7 77653
No 377
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=28.13 E-value=42 Score=26.65 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=21.5
Q ss_pred cccCcccccCceeecCEeeeeeeeeeccccChH
Q psy9732 51 SGRFMVTALPTIFQEGIRGNIERGYFNIAKEIE 83 (250)
Q Consensus 51 ~~rf~I~~~PT~i~~Gk~~~~~~~y~~G~~s~~ 83 (250)
+-.+||+.+|.++||++. +-| |..+..
T Consensus 77 Aw~lGi~k~PAVV~D~~~----VVY--G~~DV~ 103 (113)
T TIGR03757 77 AWQLGVTKIPAVVVDRRY----VVY--GETDVA 103 (113)
T ss_pred HHHcCCccCCEEEEcCCe----EEe--cCccHH
Confidence 457899999999998877 777 766654
No 378
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=28.11 E-value=53 Score=22.63 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=33.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcC----CccccccCcccccCceeecCE
Q psy9732 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV----SPGLSGRFMVTALPTIFQEGI 67 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~----~~~l~~rf~I~~~PT~i~~Gk 67 (250)
+..|+.+.|+.|++..-.++... ..+....++... .+.+.+......+|++..+|.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~ 61 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKG-----VDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDL 61 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcC-----CCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCE
Confidence 44555777999999886666543 234455555432 233444455678888765553
No 379
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=28.08 E-value=88 Score=25.67 Aligned_cols=24 Identities=4% Similarity=-0.011 Sum_probs=17.7
Q ss_pred HHHHhh--hccceeeEeecCCcchhHHH
Q psy9732 117 SEIQNK--KMHNKMMEDYGIPAWGSYTI 142 (250)
Q Consensus 117 F~~~~~--~~~~~l~~~yg~a~W~~~~i 142 (250)
|+..+. ....++++|+ ++||+.|.
T Consensus 14 ~d~~I~~~~~~lVVvdF~--A~WCgpCk 39 (142)
T PLN00410 14 VDQAILAEEERLVVIRFG--HDWDETCM 39 (142)
T ss_pred HHHHHHhcCCCEEEEEEE--CCCChhHH
Confidence 444443 3456899999 99999997
No 380
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=28.07 E-value=10 Score=30.19 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhccccCCcc
Q psy9732 151 GALLGLLLVFIIDQIYPPSAV 171 (250)
Q Consensus 151 g~~lgl~~v~~~d~~~~~k~~ 171 (250)
.++||++|+ +.|+|++|+.
T Consensus 33 ~VILgiLLl--iGCWYckRRS 51 (118)
T PF14991_consen 33 IVILGILLL--IGCWYCKRRS 51 (118)
T ss_dssp ---------------------
T ss_pred HHHHHHHHH--Hhheeeeecc
Confidence 345555555 7889888775
No 381
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=27.80 E-value=56 Score=32.94 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=18.3
Q ss_pred CeEEEEEECcCCccccccCcccccCceee
Q psy9732 36 NINVAQVDVTVSPGLSGRFMVTALPTIFQ 64 (250)
Q Consensus 36 ~v~va~VD~d~~~~l~~rf~I~~~PT~i~ 64 (250)
++.-+.|.++.+.+.|....|+..=.=++
T Consensus 14 ~vdsV~I~V~Sd~~~Ca~VSvQ~~~CPVf 42 (570)
T PF13965_consen 14 GVDSVIIRVTSDDDICAVVSVQNASCPVF 42 (570)
T ss_pred CCcEEEEEEEcCCCceeEEEEecCCCCcc
Confidence 45555555555566688888876555555
No 382
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=27.74 E-value=2.6e+02 Score=20.77 Aligned_cols=77 Identities=13% Similarity=0.070 Sum_probs=47.5
Q ss_pred CCcEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCcccccCceee--c-CEeeeeeeeeeccc
Q psy9732 3 QGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ--E-GIRGNIERGYFNIA 79 (250)
Q Consensus 3 ~g~~lV~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~~~PT~i~--~-Gk~~~~~~~y~~G~ 79 (250)
+...+|-|+..-=+ .+...|.++|..+++ .+.|+.. .++.++..+++. .|++++ + ... ...|..|.
T Consensus 19 ~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~---~~~~~~~~~~~~-~~~i~l~~~~~e~---~~~y~~g~ 87 (102)
T cd03066 19 DDIKLIGYFKSEDS---EHYKAFEEAAEEFHP-YIKFFAT---FDSKVAKKLGLK-MNEVDFYEPFMEE---PVTIPDKP 87 (102)
T ss_pred CCeEEEEEECCCCC---HHHHHHHHHHHhhhc-CCEEEEE---CcHHHHHHcCCC-CCcEEEeCCCCCC---CcccCCCC
Confidence 34566767765444 456689999999864 5677443 333556666765 677777 3 222 13352567
Q ss_pred cChHHH--Hhhhh
Q psy9732 80 KEIEEL--FRVEH 90 (250)
Q Consensus 80 ~s~~~l--fI~~~ 90 (250)
.+.+.| ||..+
T Consensus 88 ~~~~~l~~fi~~~ 100 (102)
T cd03066 88 YSEEELVDFVEEH 100 (102)
T ss_pred CCHHHHHHHHHHh
Confidence 788888 88654
No 383
>PRK11752 putative S-transferase; Provisional
Probab=27.20 E-value=1.4e+02 Score=26.54 Aligned_cols=63 Identities=11% Similarity=0.217 Sum_probs=41.6
Q ss_pred CcEEEEEECCCCHHHHHHHHHHHHH-HHHhCCCCeEEEEEECcC----CccccccCcccccCceee-cC
Q psy9732 4 GEWMVEFFAPWCPACKQMEKVWQEY-SGWAQDLNINVAQVDVTV----SPGLSGRFMVTALPTIFQ-EG 66 (250)
Q Consensus 4 g~~lV~FYApWC~~Ck~l~P~~e~l-a~~~k~~~v~va~VD~d~----~~~l~~rf~I~~~PT~i~-~G 66 (250)
|.-.+.+|...++.|++..=.++++ +..+++..+.+..||... .+++.+-.-...+|++.. +|
T Consensus 41 ~~~~~~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg 109 (264)
T PRK11752 41 GKHPLQLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSG 109 (264)
T ss_pred CCCCeEEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCC
Confidence 3335777778899999988888774 444443346677777643 234444445568999988 54
No 384
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=26.89 E-value=21 Score=35.43 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred eeeeeeEeeecccccccccCCCCeeecCCC
Q psy9732 213 TKVLPLRIQRTGYKKASYCKNKPYLFNNNN 242 (250)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (250)
.|-+|..+.| -.+|++|+++.-.
T Consensus 291 ~~df~~~l~~-------Ll~Np~f~~~~la 313 (539)
T PF03137_consen 291 IKDFPKALKR-------LLTNPVFMCLILA 313 (539)
T ss_dssp ------------------------------
T ss_pred hhhHHHHHHH-------HhcChHHHHHHHH
Confidence 3555555544 4789999987643
No 385
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.67 E-value=91 Score=22.74 Aligned_cols=22 Identities=14% Similarity=0.611 Sum_probs=13.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q psy9732 137 WGSYTIFAMVTIMIGALLGLLLV 159 (250)
Q Consensus 137 W~~~~i~~~~t~~~g~~lgl~~v 159 (250)
|... ++.+..+++|++.|.+++
T Consensus 4 ~lai-l~ivl~ll~G~~~G~fia 25 (71)
T COG3763 4 WLAI-LLIVLALLAGLIGGFFIA 25 (71)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHH
Confidence 4444 444455667777776654
No 386
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=26.64 E-value=95 Score=28.90 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=9.1
Q ss_pred cCCCCccccCceeeee
Q psy9732 200 LRDDTGLIEGTVTTKV 215 (250)
Q Consensus 200 ~~~~~~~~~~~~~~~~ 215 (250)
-++|++-.+-+|+++-
T Consensus 55 ~~~~e~~~~~rv~~~~ 70 (324)
T COG3115 55 VADDEGVGEVRVVRKN 70 (324)
T ss_pred hhccccCCcceeeecC
Confidence 3445555566666654
No 387
>PF06706 CTV_P6: Citrus tristeza virus 6-kDa protein; InterPro: IPR009584 This family consists of several Citrus tristeza virus (CTV) 6 kDa, 51 residue long hydrophobic (P6) proteins. The function of this family is unknown.
Probab=26.28 E-value=50 Score=21.88 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccccCCcc
Q psy9732 139 SYTIFAMVTIMIGALLGLLLVFIIDQIYPPSAV 171 (250)
Q Consensus 139 ~~~i~~~~t~~~g~~lgl~~v~~~d~~~~~k~~ 171 (250)
+|+-|.++..+...+.+++++.+.-..|..++.
T Consensus 7 GfLT~LvG~~VF~AF~~~iiIvitiyrctt~pv 39 (51)
T PF06706_consen 7 GFLTFLVGIAVFKAFAALIIIVITIYRCTTKPV 39 (51)
T ss_pred HHHHHHHHHHHHHHHHHHhEEEEEEEEeccccc
Confidence 344555555555667777777666666655553
No 388
>KOG2422|consensus
Probab=26.25 E-value=37 Score=34.32 Aligned_cols=16 Identities=38% Similarity=0.308 Sum_probs=6.8
Q ss_pred cCCCccccccccCCCC
Q psy9732 171 VVKKSSVTKKKKGKDL 186 (250)
Q Consensus 171 ~~~~~~~~~~k~~~~~ 186 (250)
+++++|++++|++++.
T Consensus 89 k~k~KKK~krkkKk~~ 104 (665)
T KOG2422|consen 89 KNKKKKKKKRKKKKST 104 (665)
T ss_pred ccccchhhhhcccccc
Confidence 3344444444444444
No 389
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=26.09 E-value=1.3e+02 Score=23.35 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=25.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP 48 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~ 48 (250)
..|+.|.|..|++....+++- ++.+-.+|..+++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-------~i~~~~~di~~~p 35 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-------GIEPEVVKYLKNP 35 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-------CCCeEEEeccCCC
Confidence 468899999999988766652 3566677776554
No 390
>PHA03281 envelope glycoprotein E; Provisional
Probab=26.08 E-value=94 Score=31.29 Aligned_cols=11 Identities=36% Similarity=0.250 Sum_probs=5.2
Q ss_pred ccccCCCCccc
Q psy9732 197 ESDLRDDTGLI 207 (250)
Q Consensus 197 ~~~~~~~~~~~ 207 (250)
||+++-|++|+
T Consensus 609 ed~~~~~~~~~ 619 (642)
T PHA03281 609 EDDEETDTDEE 619 (642)
T ss_pred ccccccchhhh
Confidence 44444455553
No 391
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=25.72 E-value=38 Score=29.80 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=27.5
Q ss_pred CccccccCcccccCceee-cCEeeeeeeeeeccccChHH-H-Hhhh
Q psy9732 47 SPGLSGRFMVTALPTIFQ-EGIRGNIERGYFNIAKEIEE-L-FRVE 89 (250)
Q Consensus 47 ~~~l~~rf~I~~~PT~i~-~Gk~~~~~~~y~~G~~s~~~-l-fI~~ 89 (250)
+|.+.++|+|+.+|+|++ .+.. +....|..+... | .+..
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~~----yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQG----YDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCCC----CCEEEecccHHHHHHHHHh
Confidence 688899999999999999 4333 333368877654 4 4443
No 392
>PRK01844 hypothetical protein; Provisional
Probab=25.62 E-value=1e+02 Score=22.60 Aligned_cols=17 Identities=24% Similarity=0.643 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9732 143 FAMVTIMIGALLGLLLV 159 (250)
Q Consensus 143 ~~~~t~~~g~~lgl~~v 159 (250)
+.+.++++|+++|+++.
T Consensus 9 l~I~~li~G~~~Gff~a 25 (72)
T PRK01844 9 VGVVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455667777777664
No 393
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=25.53 E-value=94 Score=21.78 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhhhccc
Q psy9732 150 IGALLGLLLVFIIDQIY 166 (250)
Q Consensus 150 ~g~~lgl~~v~~~d~~~ 166 (250)
+-+++|+.+..++..+.
T Consensus 15 l~vl~~~~Ftl~IRri~ 31 (58)
T PF13314_consen 15 LIVLFGASFTLFIRRIL 31 (58)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 394
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=25.39 E-value=2.2e+02 Score=25.13 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=35.7
Q ss_pred CCCcEEEEEECCC------CHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCcccccc----CcccccC
Q psy9732 2 LQGEWMVEFFAPW------CPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGR----FMVTALP 60 (250)
Q Consensus 2 ~~g~~lV~FYApW------C~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~r----f~I~~~P 60 (250)
+++|+-|.+|.+- =..=+.+...+++.+... .+++.+-.||-+.++..+++ +||+..+
T Consensus 23 L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s-~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~ 90 (271)
T PF09822_consen 23 LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYS-PGKIKVEFIDPDENPSEAEEKAKEYGIQPVQ 90 (271)
T ss_pred CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhC-CCceEEEEECCCCChHHHHHHHHhcCCCccc
Confidence 3567777777665 333344444444444443 23799999999777765555 8887733
No 395
>KOG3593|consensus
Probab=25.30 E-value=45 Score=31.00 Aligned_cols=9 Identities=11% Similarity=0.183 Sum_probs=4.5
Q ss_pred EEEEECcCC
Q psy9732 39 VAQVDVTVS 47 (250)
Q Consensus 39 va~VD~d~~ 47 (250)
+..|+|-..
T Consensus 61 I~aVncGgd 69 (355)
T KOG3593|consen 61 IPAVNCGGD 69 (355)
T ss_pred hheeccCCh
Confidence 445665443
No 396
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=24.84 E-value=1.1e+02 Score=22.16 Aligned_cols=10 Identities=60% Similarity=0.886 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy9732 150 IGALLGLLLV 159 (250)
Q Consensus 150 ~g~~lgl~~v 159 (250)
+|+++.++++
T Consensus 8 ~g~~~ll~~v 17 (75)
T PF14575_consen 8 VGVLLLLVLV 17 (75)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 3433333333
No 397
>KOG2466|consensus
Probab=24.24 E-value=96 Score=30.98 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=7.7
Q ss_pred HhhhccccCCccC
Q psy9732 160 FIIDQIYPPSAVV 172 (250)
Q Consensus 160 ~~~d~~~~~k~~~ 172 (250)
.++..++|.|...
T Consensus 510 wiLc~~fP~k~t~ 522 (572)
T KOG2466|consen 510 WILCLFFPVKGTP 522 (572)
T ss_pred HHHHhhcCccccc
Confidence 3344467777764
No 398
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=24.07 E-value=1e+02 Score=23.26 Aligned_cols=45 Identities=11% Similarity=0.349 Sum_probs=27.6
Q ss_pred EECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCccc
Q psy9732 10 FFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVT 57 (250)
Q Consensus 10 FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~I~ 57 (250)
||=.+|+-|......+..... ...+.++.+.-.....+...++++
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~---~~~l~~~~~~~~~~~~~~~~~~~~ 46 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR---GGRLRFVDIQSEPDQALLASYGIS 46 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC---CCCEEEEECCChhhhhHHHhcCcC
Confidence 788999999999987777622 224666555333333334445543
No 399
>KOG4075|consensus
Probab=24.02 E-value=75 Score=26.93 Aligned_cols=43 Identities=16% Similarity=0.440 Sum_probs=24.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhhccccCCccCCCcccccc
Q psy9732 135 PAWGSYTIFAMVTIMIGALLGLLLVFIIDQIYPPSAVVKKSSVTKK 180 (250)
Q Consensus 135 a~W~~~~i~~~~t~~~g~~lgl~~v~~~d~~~~~k~~~~~~~~~~~ 180 (250)
..|=. +|+.+.+++|+.+++++...+ |++++.|..-.+..|++
T Consensus 97 ~ewKt--v~g~~~~f~Gl~~~v~l~~~v-~vy~~~P~Tf~~Ewq~k 139 (167)
T KOG4075|consen 97 NEWKT--VFGVAGFFLGLTISVILFGKV-RVYGPLPKTFNKEWQEK 139 (167)
T ss_pred Ccccc--hhhHHHHHHHHHHHHHHHHhh-eecCCCCcchhHHHHHH
Confidence 45544 344455555665555444333 38999988665555543
No 400
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=23.97 E-value=74 Score=22.74 Aligned_cols=15 Identities=20% Similarity=0.897 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy9732 145 MVTIMIGALLGLLLV 159 (250)
Q Consensus 145 ~~t~~~g~~lgl~~v 159 (250)
+.++++|+++|.++.
T Consensus 4 ilali~G~~~Gff~a 18 (64)
T PF03672_consen 4 ILALIVGAVIGFFIA 18 (64)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344667777777665
No 401
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=23.96 E-value=1.8e+02 Score=25.07 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=37.4
Q ss_pred CCcEEEEEECCCCH-HHHHHHHHHHHHHHHhC---CCCeEEEEEECcCCcc---ccccCcc
Q psy9732 3 QGEWMVEFFAPWCP-ACKQMEKVWQEYSGWAQ---DLNINVAQVDVTVSPG---LSGRFMV 56 (250)
Q Consensus 3 ~g~~lV~FYApWC~-~Ck~l~P~~e~la~~~k---~~~v~va~VD~d~~~~---l~~rf~I 56 (250)
.++++|.|-=+.|| -|-.+...+..+.+++. ..++.++-|-+|-+.+ ..+.|..
T Consensus 67 Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 67 GKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 46788888878885 59988888888877765 3457777777765543 3444444
No 402
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=23.73 E-value=82 Score=27.08 Aligned_cols=19 Identities=32% Similarity=0.637 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9732 141 TIFAMVTIMIGALLGLLLV 159 (250)
Q Consensus 141 ~i~~~~t~~~g~~lgl~~v 159 (250)
.+++++++++|+++|.++.
T Consensus 3 ii~~i~~~~vG~~~G~~~~ 21 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVR 21 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888775
No 403
>KOG0843|consensus
Probab=23.58 E-value=28 Score=30.03 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=17.2
Q ss_pred hhccccCCccCCCccccccccCCCCCCCCCCccccccccCCC
Q psy9732 162 IDQIYPPSAVVKKSSVTKKKKGKDLGAKDSDVETDESDLRDD 203 (250)
Q Consensus 162 ~d~~~~~k~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 203 (250)
+..+|.-++...+...++ +|..+..+++..+++++++.+++
T Consensus 146 VkvWFQNRRtk~kr~~~e-~k~s~~~~~~~~~~~~~de~~~~ 186 (197)
T KOG0843|consen 146 VKVWFQNRRTKHKRMQQE-DKGSDPRAEKKSDEEDKDEEEDD 186 (197)
T ss_pred hhhhhhhhhHHHHHHHHH-hhccCcccccccccccccccccc
Confidence 344664444333333333 23444455554444333333333
No 404
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=23.26 E-value=97 Score=29.98 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=23.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy9732 136 AWGSYTIFAMVTIMIGALLGLLLVFIIDQI 165 (250)
Q Consensus 136 ~W~~~~i~~~~t~~~g~~lgl~~v~~~d~~ 165 (250)
.++...++.++.+++|+++|+.++++.+.+
T Consensus 409 ~~P~~~~~l~~g~~~Gl~lg~~~~~l~e~l 438 (498)
T TIGR03007 409 SGPNRPLLMLAGLLGGLGAGIGLAFLLSQL 438 (498)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666677888999999999988864
No 405
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=23.13 E-value=1.2e+02 Score=25.33 Aligned_cols=15 Identities=7% Similarity=-0.157 Sum_probs=13.6
Q ss_pred ceeeEeecCCcchhHHH
Q psy9732 126 NKMMEDYGIPAWGSYTI 142 (250)
Q Consensus 126 ~~l~~~yg~a~W~~~~i 142 (250)
.+++.|| ++||+.|.
T Consensus 85 ~VVV~Fy--a~wc~~Ck 99 (175)
T cd02987 85 TVVVHIY--EPGIPGCA 99 (175)
T ss_pred EEEEEEE--CCCCchHH
Confidence 6888998 99999987
No 406
>PF15345 TMEM51: Transmembrane protein 51
Probab=22.96 E-value=28 Score=31.09 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHh
Q psy9732 148 IMIGALLGLLLVFI 161 (250)
Q Consensus 148 ~~~g~~lgl~~v~~ 161 (250)
++.|++|-|+.+|+
T Consensus 65 VG~Gv~LLLLSICL 78 (233)
T PF15345_consen 65 VGSGVALLLLSICL 78 (233)
T ss_pred hhHHHHHHHHHHHH
Confidence 44455555555554
No 407
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=22.95 E-value=1.2e+02 Score=26.17 Aligned_cols=28 Identities=11% Similarity=0.360 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy9732 138 GSYTIFAMVTIMIGALLGLLLVFIIDQI 165 (250)
Q Consensus 138 ~~~~i~~~~t~~~g~~lgl~~v~~~d~~ 165 (250)
+...+..+..+++|+++|++++++.+.+
T Consensus 172 P~~~~~~~~g~~~G~~~~~~~~~~~~~~ 199 (226)
T TIGR01006 172 PNPKRNLLIGFLLGLVVALIIVLLKELL 199 (226)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666778888888888776653
No 408
>PF05293 ASFV_L11L: African swine fever virus (ASFV) L11L protein; InterPro: IPR007957 L11L is an integral membrane protein of the African swine fever virus, which is expressed late in the virus replication cycle. The protein is thought to be non-essential for growth in vitro and for virus virulence in domestic pigs [].
Probab=22.94 E-value=1.6e+02 Score=21.12 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhhccccCCc
Q psy9732 150 IGALLGLLLVFIIDQIYPPSA 170 (250)
Q Consensus 150 ~g~~lgl~~v~~~d~~~~~k~ 170 (250)
+.+++|-++.++-|+++||.-
T Consensus 32 ialflgclffilrdfcfppml 52 (78)
T PF05293_consen 32 IALFLGCLFFILRDFCFPPML 52 (78)
T ss_pred HHHHHHHHHHHHHHccCCHHH
Confidence 467888888888999998753
No 409
>KOG0911|consensus
Probab=22.93 E-value=88 Score=27.85 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCccccccCc-ccccCc---eeecCEe
Q psy9732 12 APWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFM-VTALPT---IFQEGIR 68 (250)
Q Consensus 12 ApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~~l~~rf~-I~~~PT---~i~~Gk~ 68 (250)
.|-||..+++..++... ++.+...|+-++.++.+-.+ ...+|| ++++|.+
T Consensus 151 ~P~CGFS~~~v~iL~~~-------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEF 204 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSH-------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEF 204 (227)
T ss_pred cccccccHHHHHHHHHc-------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEe
Confidence 58999999988777652 47788899987776544322 234555 4559987
No 410
>KOG0908|consensus
Probab=22.89 E-value=1.2e+02 Score=27.80 Aligned_cols=29 Identities=3% Similarity=-0.152 Sum_probs=19.7
Q ss_pred hhhHHHHHHh-hhccceeeEeecCCcchhHHH
Q psy9732 112 VLMLISEIQN-KKMHNKMMEDYGIPAWGSYTI 142 (250)
Q Consensus 112 ~~~~~F~~~~-~~~~~~l~~~yg~a~W~~~~i 142 (250)
..+.|-..+. ...+.++++|+ +.||+.|.
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdft--a~wCGPCk 37 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFT--ASWCGPCK 37 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEE--ecccchHH
Confidence 3333333443 34567899998 99999998
No 411
>PRK14766 lipoprotein signal peptidase; Provisional
Probab=22.77 E-value=78 Score=27.62 Aligned_cols=36 Identities=14% Similarity=0.045 Sum_probs=18.7
Q ss_pred cceeeEeecCC------cchhHHHHHHHHHHHHHHHHHHHHHh
Q psy9732 125 HNKMMEDYGIP------AWGSYTIFAMVTIMIGALLGLLLVFI 161 (250)
Q Consensus 125 ~~~l~~~yg~a------~W~~~~i~~~~t~~~g~~lgl~~v~~ 161 (250)
+.+.++|..+. .|..+ -+|-..+.+|+++|++++++
T Consensus 136 ~G~VVDFi~~~~~~~~~~~~iF-NvADi~I~iG~~l~vi~li~ 177 (201)
T PRK14766 136 YGGVVDFLTWDFSLLNSRDYVF-NLADLYVNIAIGLTILFTII 177 (201)
T ss_pred CceEEEeEEEeecccCCCCcEE-EhHHHHHHHHHHHHHHHHHH
Confidence 45666774321 23322 23445666687777655544
No 412
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=22.70 E-value=1.6e+02 Score=21.17 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=20.8
Q ss_pred CCcchhHHHHHHHHHHH---HHHHHHHHHHhhhccccC
Q psy9732 134 IPAWGSYTIFAMVTIMI---GALLGLLLVFIIDQIYPP 168 (250)
Q Consensus 134 ~a~W~~~~i~~~~t~~~---g~~lgl~~v~~~d~~~~~ 168 (250)
++||.+|++|++.+... .+.+-+.+.-.+|.++.|
T Consensus 9 l~pf~vYlif~fv~c~~iCSi~~~~it~~Q~iDy~~vR 46 (67)
T PF03376_consen 9 LPPFAVYLIFAFVTCTCICSIVCFVITFFQCIDYIYVR 46 (67)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999998876543 222222233356766644
No 413
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=22.70 E-value=1.5e+02 Score=23.93 Aligned_cols=22 Identities=23% Similarity=0.766 Sum_probs=13.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHH
Q psy9732 135 PAWGSYTIFAMVTIMIGALLGLLLV 159 (250)
Q Consensus 135 a~W~~~~i~~~~t~~~g~~lgl~~v 159 (250)
+||- |.+++++.++ +++|++|.
T Consensus 33 tpWN-ysiL~Ls~vv--lvi~~~LL 54 (125)
T PF15048_consen 33 TPWN-YSILALSFVV--LVISFFLL 54 (125)
T ss_pred CCcc-hHHHHHHHHH--HHHHHHHH
Confidence 6775 6677766554 34555544
No 414
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=22.63 E-value=95 Score=23.91 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=24.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc
Q psy9732 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP 48 (250)
Q Consensus 8 V~FYApWC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~ 48 (250)
..|+.|.|..|++....+++- ++.+--+|.-+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-------~i~~~~~di~~~~ 35 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-------GIEPEIVEYLKTP 35 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-------CCCeEEEecccCC
Confidence 568899999999987655542 4566667765554
No 415
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=22.58 E-value=59 Score=30.45 Aligned_cols=8 Identities=25% Similarity=0.729 Sum_probs=4.5
Q ss_pred CCCCHHHH
Q psy9732 12 APWCPACK 19 (250)
Q Consensus 12 ApWC~~Ck 19 (250)
|..||+|-
T Consensus 60 s~~CGPCL 67 (341)
T PF06809_consen 60 SSACGPCL 67 (341)
T ss_pred CCCcCccc
Confidence 44566664
No 416
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=22.58 E-value=1e+02 Score=22.58 Aligned_cols=24 Identities=0% Similarity=-0.313 Sum_probs=14.0
Q ss_pred eehhhhHHHHHHhhhccceeeEee
Q psy9732 109 QCNVLMLISEIQNKKMHNKMMEDY 132 (250)
Q Consensus 109 ~~~~~~~~F~~~~~~~~~~l~~~y 132 (250)
.|...++.|+.++.....+|.+..
T Consensus 12 Fmss~ddDf~~Fi~vVksVltdk~ 35 (72)
T PF12575_consen 12 FMSSSDDDFNNFINVVKSVLTDKK 35 (72)
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCc
Confidence 344555566666666666666554
No 417
>PF12438 DUF3679: Protein of unknown function (DUF3679) ; InterPro: IPR020534 This entry contains proteins with no known function.
Probab=22.17 E-value=84 Score=21.89 Aligned_cols=19 Identities=26% Similarity=0.611 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9732 141 TIFAMVTIMIGALLGLLLV 159 (250)
Q Consensus 141 ~i~~~~t~~~g~~lgl~~v 159 (250)
|+++...+++|+++|+=..
T Consensus 2 ~~~~~~il~~gVl~Gmq~A 20 (56)
T PF12438_consen 2 CILLVIILFFGVLLGMQQA 20 (56)
T ss_pred chHHHHHHHHHHHHhHHHH
Confidence 3455566777888888554
No 418
>PF11021 DUF2613: Protein of unknown function (DUF2613); InterPro: IPR022566 This is a family of putative small secreted proteins expressed by Actinobacteria. The function is not known.
Probab=21.44 E-value=1.1e+02 Score=21.29 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Q psy9732 142 IFAMVTIMIGALLGLLLVFIIDQIY 166 (250)
Q Consensus 142 i~~~~t~~~g~~lgl~~v~~~d~~~ 166 (250)
.-+++..++|+++|+..++.+-...
T Consensus 6 ~pa~aSaV~Gi~lG~~av~gvt~~~ 30 (56)
T PF11021_consen 6 GPAAASAVVGIVLGVAAVFGVTAAA 30 (56)
T ss_pred hHHHHHHHHHHHHHHHHHhhhheee
Confidence 4467788899999999998776644
No 419
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=21.43 E-value=31 Score=31.32 Aligned_cols=22 Identities=27% Similarity=0.694 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q psy9732 136 AWGSYTIFAMVTIMIGALLGLL 157 (250)
Q Consensus 136 ~W~~~~i~~~~t~~~g~~lgl~ 157 (250)
.|...++.+++.+++|+++|++
T Consensus 214 q~~~iAL~sl~SLVIGFvlG~l 235 (273)
T PF02404_consen 214 QWPAIALPSLFSLVIGFVLGAL 235 (273)
T ss_dssp ----------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5777778889999999999986
No 420
>KOG2140|consensus
Probab=21.34 E-value=38 Score=34.03 Aligned_cols=7 Identities=14% Similarity=0.553 Sum_probs=2.9
Q ss_pred HHHHHHH
Q psy9732 25 WQEYSGW 31 (250)
Q Consensus 25 ~e~la~~ 31 (250)
|+.+-+.
T Consensus 161 WEalkks 167 (739)
T KOG2140|consen 161 WEALKKS 167 (739)
T ss_pred HHHHHHH
Confidence 4444333
No 421
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=21.20 E-value=1.1e+02 Score=19.56 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhhhcc
Q psy9732 148 IMIGALLGLLLVFIIDQI 165 (250)
Q Consensus 148 ~~~g~~lgl~~v~~~d~~ 165 (250)
++.|+++|++.|-++..+
T Consensus 5 lL~GiVlGli~vtl~Glf 22 (37)
T PF02529_consen 5 LLSGIVLGLIPVTLAGLF 22 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhHHHHHHHHH
Confidence 556777777776655443
No 422
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=21.13 E-value=1.2e+02 Score=23.85 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=17.2
Q ss_pred EEEEECCCCHHHHHHHHHHHH
Q psy9732 7 MVEFFAPWCPACKQMEKVWQE 27 (250)
Q Consensus 7 lV~FYApWC~~Ck~l~P~~e~ 27 (250)
+..|+.|.|..|++....+++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456779999999998877765
No 423
>TIGR02830 spore_III_AG stage III sporulation protein AG. CC A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AG.
Probab=20.93 E-value=1.2e+02 Score=26.20 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhhccc
Q psy9732 152 ALLGLLLVFIIDQIY 166 (250)
Q Consensus 152 ~~lgl~~v~~~d~~~ 166 (250)
+++|++|+++...+-
T Consensus 10 ~l~GvlLli~s~~f~ 24 (186)
T TIGR02830 10 LLIGLLLLIVSSFFS 24 (186)
T ss_pred HHHHHHHHHhhcccc
Confidence 477888877766544
No 424
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=20.52 E-value=80 Score=25.07 Aligned_cols=53 Identities=19% Similarity=0.506 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCc-cccccC--cccccCceee-cCEe
Q psy9732 14 WCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP-GLSGRF--MVTALPTIFQ-EGIR 68 (250)
Q Consensus 14 WC~~Ck~l~P~~e~la~~~k~~~v~va~VD~d~~~-~l~~rf--~I~~~PT~i~-~Gk~ 68 (250)
.|+||..++-.+...-..-. ++-|.+|+...-. .+.... .-++.|++++ +|..
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~--~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~ 79 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRE--RLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAP 79 (112)
T ss_pred ECCchHHHHhHHhhChhhhh--cccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCC
Confidence 49999998887766555432 4778888876533 222222 2369999999 6654
No 425
>PHA03054 IMV membrane protein; Provisional
Probab=20.27 E-value=1.4e+02 Score=21.82 Aligned_cols=20 Identities=0% Similarity=-0.283 Sum_probs=11.6
Q ss_pred hhhHHHHHHhhhccceeeEe
Q psy9732 112 VLMLISEIQNKKMHNKMMED 131 (250)
Q Consensus 112 ~~~~~F~~~~~~~~~~l~~~ 131 (250)
..++.|+.+++....++.+.
T Consensus 15 s~d~Df~~Fi~vV~sVl~dk 34 (72)
T PHA03054 15 SPEDDLTDFIEIVKSVLSDE 34 (72)
T ss_pred CchHHHHHHHHHHHHHHcCC
Confidence 33445666666666666665
No 426
>PHA02692 hypothetical protein; Provisional
Probab=20.11 E-value=1.4e+02 Score=21.68 Aligned_cols=24 Identities=13% Similarity=-0.277 Sum_probs=15.9
Q ss_pred eehhhhHHHHHHhhhccceeeEee
Q psy9732 109 QCNVLMLISEIQNKKMHNKMMEDY 132 (250)
Q Consensus 109 ~~~~~~~~F~~~~~~~~~~l~~~y 132 (250)
.|...++.|+.+++-...++.+.+
T Consensus 12 Fmss~DdDF~~Fi~vVksVLtDk~ 35 (70)
T PHA02692 12 FLSNSDEDFEEFLNIVRTVMTEKP 35 (70)
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCC
Confidence 344455667777777777777764
Done!