RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9732
(250 letters)
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 96.6 bits (241), Expect = 1e-25
Identities = 35/63 (55%), Positives = 53/63 (84%)
Query: 1 MLQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALP 60
+L+G+WM+EF+APWCPAC+ ++ W+ ++ W +DL +N+A+VDVT PGLSGRF++ ALP
Sbjct: 20 LLEGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALP 79
Query: 61 TIF 63
TI+
Sbjct: 80 TIY 82
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 67.8 bits (166), Expect = 1e-14
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGW--AQDLNINVAQVDVTVSPGLSGRFMVTALPTI- 62
++EF+APWC CKQ +++ + D I VA++D T + L+ +F V+ PTI
Sbjct: 37 VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIK 96
Query: 63 -FQEG 66
++G
Sbjct: 97 ILKKG 101
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 65.0 bits (159), Expect = 6e-14
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 3 QGEWMVEFFAPWCPACKQMEKVWQEYSG--WAQDLNINVAQVDVTVSPGLSGRFMVTALP 60
+G ++F+APWC CK + W+E S + + +A+VD T + ++ V P
Sbjct: 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYP 80
Query: 61 TI--FQEG 66
T+ F+ G
Sbjct: 81 TLLLFRGG 88
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 65.5 bits (160), Expect = 8e-14
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSG---WAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
WMVEF+APWC CK +E W + + +A VD TV+ L+ R+ + PTI
Sbjct: 28 WMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTI 87
Query: 63 --FQEG 66
FQ+G
Sbjct: 88 KIFQKG 93
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 65.1 bits (159), Expect = 9e-14
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 6 WMVEFFAPWCPACKQMEKVWQE----YSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT 61
V ++ PW ++W + S L A++D P + R V+ PT
Sbjct: 36 VFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPT 95
Query: 62 IF 63
+
Sbjct: 96 MR 97
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 64.3 bits (157), Expect = 2e-13
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDL--NINVAQVDVTVSPGLSGRFMVTALPTI- 62
W+VEF+APWC C+++ W++ A L + V V+ L G++ V PTI
Sbjct: 38 WLVEFYAPWCGHCQRLTPEWKKA---ATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIK 94
Query: 63 -FQEG 66
F
Sbjct: 95 IFGAN 99
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 62.7 bits (153), Expect = 7e-13
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGW--AQDLNINVAQVDVTVSPGLSGRFMVTALPTI- 62
+VEF+APWC CK + + + +G A+ I +A+VD T L+ ++ V PTI
Sbjct: 27 LLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIK 86
Query: 63 -FQEGIRGNIE 72
F+ G + +
Sbjct: 87 FFRNGDTASPK 97
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 63.3 bits (154), Expect = 3e-12
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSG--WAQDLNINVAQVDVTVSPGLSGRFMVTALPTI- 62
++EF+APWC CKQ +++ + +D I VA++D T + L+ RF V+ PTI
Sbjct: 35 VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIK 94
Query: 63 -FQEG 66
++G
Sbjct: 95 ILKKG 99
Score = 57.9 bits (140), Expect = 2e-10
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGW--AQDLNINVAQVDVTVSPGLSGRFMVTALPTI- 62
+VEF+APWC CK++ +++ + + I +A+VD T L+ RF V+ PT+
Sbjct: 150 ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLK 209
Query: 63 -FQEG 66
F++G
Sbjct: 210 IFRKG 214
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 64.5 bits (156), Expect = 3e-12
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI--F 63
+ EFFAPWC CK M + + + + NI +AQ+D T + L + P++ F
Sbjct: 34 VLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIF 93
Query: 64 QEGIRGNIE 72
+ N
Sbjct: 94 KNSDVNNSI 102
Score = 50.2 bits (119), Expect = 2e-07
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDL--NINVAQVDVTVSPGLSGRFMVTALPTIF 63
+V ++APWC CK++ +QE + + ++ +A++D T + ++ PTI
Sbjct: 379 VLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEN--DVRGVVIEGYPTIV 436
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 64.4 bits (156), Expect = 5e-12
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
W+V+FFAPW P + + ++ S + V +D T+ GL + + A PT
Sbjct: 458 WLVDFFAPWSPPSRALLPELRKASTLLYG-QLKVGTLDCTIHEGLCNMYNIQAYPTT 513
Score = 57.5 bits (138), Expect = 9e-10
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 5 EWMVEFFAPWCPACKQMEKVWQEYSGWAQDL--NINVAQVDVTVSPGLSGRFMVTALPTI 62
W+V+F+APW + ++ A+ + + +VD P + + A P++
Sbjct: 677 HWVVDFYAPWSGPSQNFAPEFELL---ARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSV 733
Query: 63 F 63
Sbjct: 734 K 734
Score = 57.1 bits (137), Expect = 1e-09
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLN--INVAQVDVTVSPGLSGRFMVTALPTIF 63
W V F++P + W+E+ A++++ + + V+ L V + P++F
Sbjct: 136 WFVNFYSPGSSHSHDLAPTWREF---AKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLF 192
Score = 52.4 bits (125), Expect = 4e-08
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLN--INVAQVDVTVSPGLSGRFMVTALPTI 62
WMV+F++PW + + W+ A+ L INV VD + V P I
Sbjct: 566 WMVDFYSPWSHPSQVLMPEWKRM---ARTLTGLINVGSVDCGQYHSFCTQENVQRYPEI 621
Score = 38.6 bits (89), Expect = 0.001
Identities = 11/60 (18%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 5 EWMVEFFAPWCPACKQMEKVWQEYS-GWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
V + +C + D +NV VD L TA T +
Sbjct: 241 AAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAY 300
Score = 34.0 bits (77), Expect = 0.044
Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Query: 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGI 67
F + + ++ ++ +I V + D + +PG+ V P++
Sbjct: 354 WLVFFHFGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVFQ-PSLAVFKG 412
Query: 68 RGNIERGYFNIAKEIEELFRVEHNFGQSFI----ASTFPEHST 106
+G E + K + ++ S + FP
Sbjct: 413 QGTKEYEIHHGKKILYDILAFAKESVNSHVTTLGPQNFPASDK 455
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 60.5 bits (147), Expect = 5e-12
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 6 WMVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT 61
W+V+F+APWC C+ E + + G + +VD P + + A P+
Sbjct: 24 WVVDFYAPWCGPCQNFAPEFELLARMIKG-----KVRAGKVDCQAYPQTCQKAGIKAYPS 78
Query: 62 I--FQEG 66
+ +Q
Sbjct: 79 VKLYQYE 85
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 60.5 bits (147), Expect = 6e-12
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 6 WMVEFFAPWCPACKQMEKVWQE----YSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT 61
++EF+APWC CKQ+E ++ Y G ++ +A++D T + + ++ V PT
Sbjct: 28 VLIEFYAPWCGHCKQLEPIYTSLGKKYKG---QKDLVIAKMDATANDITNDQYKVEGFPT 84
Query: 62 IF 63
I+
Sbjct: 85 IY 86
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 61.6 bits (149), Expect = 3e-11
Identities = 7/69 (10%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 1 MLQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDL-------NINVAQVDVTVSPGLSGR 53
+ + + + ++ + K +K +Q + + +I VD L+ +
Sbjct: 25 LKKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKK 84
Query: 54 FMVTALPTI 62
++
Sbjct: 85 LGFDEEGSL 93
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 60.8 bits (147), Expect = 6e-11
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSG-----WAQDLNINVAQVDVTVSPGLSGRFMVTALP 60
+V F+A WC + + +++E S + + + A+VD ++ R+ ++ P
Sbjct: 25 ALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYP 84
Query: 61 TI--FQEG 66
T+ F+ G
Sbjct: 85 TLKLFRNG 92
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 60.4 bits (145), Expect = 8e-11
Identities = 21/160 (13%), Positives = 46/160 (28%), Gaps = 19/160 (11%)
Query: 6 WMVEFFAPWCPACKQMEKVW-------QEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA 58
W+V F+ C AC++ + + G A V+ L ++ +
Sbjct: 45 WIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINF 104
Query: 59 LPTIF------------QEGIRGNIERGYFNIAKEIEELFRVEHNFGQSFIASTFPEHST 106
+P +F + G + N E++EL +
Sbjct: 105 VPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVNKHMVVDDSLKER 164
Query: 107 TIQCNVLMLISEIQNKKMHNKMMEDYGIPAWGSYTIFAMV 146
I + + S+ + K ++ G + +
Sbjct: 165 CIDMHFKLYTSKEELVKRSVSSTDESGRFVETTELYATDI 204
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 60.4 bits (145), Expect = 9e-11
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
Query: 6 WMVEFFAPWCPACKQMEKVW----QEYSGWAQDLNINVAQVDVT--VSPGLSGRFMVTAL 59
W VEFFA WC W + W +N+A +D + + F +
Sbjct: 33 WAVEFFASWCGHAIAFAPTWKELANDVKDW--RPALNLAVLDCAEETNSAVCREFNIAGF 90
Query: 60 PTI--FQEGIRGNIERGYFNIAKEIEEL 85
PT+ FQ + ++ L
Sbjct: 91 PTVRFFQAFTKNGSGATLPGAGANVQTL 118
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 59.9 bits (144), Expect = 1e-10
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI--F 63
+VEFFAPWC K++ ++ + + + +A+VD T + ++ V+ PT+ F
Sbjct: 24 MLVEFFAPWCGHAKRLAPEYEAAATRLKG-IVPLAKVDCTANTNTCNKYGVSGYPTLKIF 82
Query: 64 QEG 66
++G
Sbjct: 83 RDG 85
Score = 52.6 bits (125), Expect = 3e-08
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 3 QGEWMVEFFAPWCPACKQMEKVWQEYSG-WAQDLNINVAQVDVTVSPGLSGRFMVTALPT 61
+ ++EF+APWC CK +E ++E ++D NI +A++D T + + + V PT
Sbjct: 370 NKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPT 428
Query: 62 IF 63
I+
Sbjct: 429 IY 430
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 58.5 bits (141), Expect = 2e-10
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 10/88 (11%)
Query: 6 WMVEFFAPWCPACKQMEKVW----QEYSGWAQDLNINVAQVDVTVS--PGLSGRFMVTAL 59
W VEFFA WC C W ++ W + +A +D + F +
Sbjct: 33 WAVEFFASWCGHCIAFAPTWXALAEDVKAW--RPALYLAALDCAEETNSAVCRDFNIPGF 90
Query: 60 PTI--FQEGIRGNIERGYFNIAKEIEEL 85
PT+ F + +++ L
Sbjct: 91 PTVRFFXAFTXNGSGAVFPVAGADVQTL 118
Score = 37.7 bits (87), Expect = 0.002
Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 9/81 (11%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQE 65
+ F +++ +Q + V +V + +F VT P+ +
Sbjct: 160 LALIFEXGGSYLAREVAL------DLSQHKGVAVRRVL-NTEANVVRKFGVTDFPSCYL- 211
Query: 66 GIRGNIERGYFNIAKEIEELF 86
+ N + E +
Sbjct: 212 -LFRNGSVSRVPVLMESRSFY 231
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 54.7 bits (132), Expect = 5e-10
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
++ F W CK +++V++ S + N++ +D + +S F ++A+P I
Sbjct: 25 VLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFIIIH 84
Query: 65 EG 66
+G
Sbjct: 85 KG 86
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 54.7 bits (132), Expect = 6e-10
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 6 WMVEFFAPWCPACKQMEKVWQE----YSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT 61
++EF+APWC CK + ++E Y+ + +A+VD T + + PT
Sbjct: 28 VLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDE---IQGFPT 84
Query: 62 IF 63
I
Sbjct: 85 IK 86
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 55.2 bits (133), Expect = 7e-10
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
++ P + E + VA D+ S + RF V P +F
Sbjct: 40 LLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFT 99
Query: 65 EG 66
+G
Sbjct: 100 DG 101
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 57.1 bits (137), Expect = 8e-10
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEY-SGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI-- 62
+VEF+APWC CK++ +++ + + D+ + L ++ V PT+
Sbjct: 38 SLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMV 97
Query: 63 FQEG 66
F+
Sbjct: 98 FRPP 101
Score = 29.7 bits (66), Expect = 0.77
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDL 35
+F++ KQ+ + Y +
Sbjct: 188 GKFDFYSISNKKLKQLTDMNPTYEKTPEIF 217
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 54.4 bits (131), Expect = 9e-10
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDL-NINVAQVDVTV----SPGLSGRFMVTALPT 61
M++ +A WC ACK+ EK + L + + Q +VT L V LPT
Sbjct: 35 MLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPT 94
Query: 62 IF 63
I
Sbjct: 95 IL 96
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 53.2 bits (128), Expect = 2e-09
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
++ F CP C +M V +E G NI A+++ + L+ ++ +PT
Sbjct: 30 IIMFKTDTCPYCVEMQKELSYVSKEREG---KFNIYYARLEEEKNIDLAYKYDANIVPTT 86
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 55.6 bits (134), Expect = 2e-09
Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+ F++ C Q+ E + +Y+G +A++D ++ +F + A+PT+
Sbjct: 30 LFYFWSERSQHCLQLTPILESLAAQYNG-----QFILAKLDCDAEQMIAAQFGLRAIPTV 84
Query: 63 F 63
+
Sbjct: 85 Y 85
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 137
Score = 53.7 bits (129), Expect = 2e-09
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTA------L 59
W+VEFFA W C+ ++ + S +N +VDV +S R+ V+ L
Sbjct: 29 WIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQL 88
Query: 60 PT--IFQEG 66
PT +FQ G
Sbjct: 89 PTLILFQGG 97
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 51.9 bits (125), Expect = 4e-09
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 12/89 (13%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
++ C C M V + Y+ + ++ + ++GR+ V PT
Sbjct: 22 LLFIKTENCGVCDVMLRKVNYVLENYN------YVEKIEILLQDMQEIAGRYAVFTGPTV 75
Query: 62 -IFQEGIRGNIERGYFNIAKEIEELFRVE 89
+F G E + ++ + E
Sbjct: 76 LLFYNGKEILRESRFISLENLERTIQLFE 104
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 51.2 bits (123), Expect = 7e-09
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V F CP CK MEKV ++ A + ++ VD P L +PT +
Sbjct: 23 IVFFHKNLCPHCKNMEKVLDKFGARAPQ--VAISSVDSEARPELMKELGFERVPTLVFIR 80
Query: 65 EG 66
+G
Sbjct: 81 DG 82
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 54.2 bits (130), Expect = 8e-09
Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 6 WMVEFFAPWCPACKQ------MEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTAL 59
+ + P E + + + +D + VD ++ + +T
Sbjct: 33 LALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEE 92
Query: 60 PTI--FQEGIR 68
+I F+E
Sbjct: 93 DSIYVFKEDEV 103
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 51.8 bits (124), Expect = 1e-08
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V F+APW P C QM +V E + + ++ +++ P +S ++ ++++PT F+
Sbjct: 36 VVHFWAPWAPQCAQMNEVMAELA--KELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 93
Query: 65 EG 66
Sbjct: 94 NS 95
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase;
NMR {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Length = 85
Score = 50.0 bits (120), Expect = 1e-08
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+ F +P CP C ++ +E+ I+V ++D+ V + + + A+P I
Sbjct: 5 IEVFTSPTCPYCPMAIEVVDEAKKEFGD-----KIDVEKIDIMVDREKAIEYGLMAVPAI 59
Query: 63 FQEG 66
G
Sbjct: 60 AING 63
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 51.3 bits (123), Expect = 1e-08
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+F+APWC C+QM + +G + +A++D P ++GR + +P
Sbjct: 68 LVDFWAPWCGPCRQMAPQFQAAAATLAG-----QVRLAKIDTQAHPAVAGRHRIQGIPAF 122
Query: 62 -IFQEG 66
+F +G
Sbjct: 123 ILFHKG 128
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 50.9 bits (122), Expect = 2e-08
Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+FFAPWC C+ + E++ ++++G + V +V+V PGL+ R+ V ++PT
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAG-----RLKVVKVNVDEHPGLAARYGVRSVPTL 108
Query: 62 -IFQEG 66
+F+ G
Sbjct: 109 VLFRRG 114
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 49.8 bits (119), Expect = 4e-08
Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 2 LQGEWMVEFFAPWCPACKQM----EKVWQEYSGWAQ--DLNINVAQVDVTVSPGLSGRFM 55
LQG+ ++ ++ CP C + + +E + + +++ + +
Sbjct: 30 LQGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAG 89
Query: 56 VTALPTI--FQEG 66
V PT+ ++EG
Sbjct: 90 VEGTPTLVFYKEG 102
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 50.1 bits (120), Expect = 4e-08
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+++F+APWC C+ + E +G + +V+ P LS RF + ++PT
Sbjct: 59 VIDFWAPWCGPCRSFAPIFAETAAERAG-----KVRFVKVNTEAEPALSTRFRIRSIPTI 113
Query: 62 -IFQEG 66
+++ G
Sbjct: 114 MLYRNG 119
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 49.8 bits (119), Expect = 5e-08
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+ F A WC +Q+ + E S ++ +DV S + + A PT +
Sbjct: 50 LANFSARWCGPSRQIAPYYIELS--ENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLR 107
Query: 65 EG 66
+G
Sbjct: 108 DG 109
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 49.3 bits (118), Expect = 5e-08
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V+FFA WC CK + +++E ++ + +VDV + ++ ++A+PT +
Sbjct: 37 VVDFFATWCGPCKTIAPLFKE---LSEKYDAIFVKVDVDKLEETARKYNISAMPTFIAIK 93
Query: 65 EG 66
G
Sbjct: 94 NG 95
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 48.9 bits (117), Expect = 8e-08
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 7 MVEFFAPWCPACKQMEK-VWQEYSGWAQDLNINVAQVDVTVS----PGLSGRFMVTALPT 61
MV F + CP C+QM V + G ++ L V+V L+ R+ V PT
Sbjct: 23 MVYFHSEHCPYCQQMNTFVLSD-PGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPT 81
Query: 62 IF 63
Sbjct: 82 FV 83
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula}
SCOP: c.47.1.1
Length = 113
Score = 48.5 bits (116), Expect = 9e-08
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+V+F A WCP CK + ++ E + + N+ +VDV ++ + V A+PT
Sbjct: 30 VVDFTASWCPPCKMIAPIFAELA--KKFPNVTFLKVDVDELKAVAEEWNVEAMPTFI 84
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 47.7 bits (114), Expect = 9e-08
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+ F +P CP C E+V E + V ++V +P + + + A+PT
Sbjct: 6 IELFTSPMCPHCPAAKRVVEEVANEMPD-----AVEVEYINVMENPQKAMEYGIMAVPTI 60
Query: 62 -IFQEG 66
I +
Sbjct: 61 VINGDV 66
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity,
IGE, fungi, epitope, allergen; 1.41A {Malassezia
sympodialis}
Length = 121
Score = 48.5 bits (116), Expect = 9e-08
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+++F+A WC CK + V+++ S + +VDV ++ + A+PT F+
Sbjct: 37 VIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFK 96
Query: 65 EG 66
G
Sbjct: 97 NG 98
>1gh2_A Thioredoxin-like protein; redox-active center, electron
transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 48.1 bits (115), Expect = 1e-07
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V+F C C ++ + S + +VDV G + ++A PT F+
Sbjct: 25 VVKFTMRGCGPCLRIAPAFSSMS--NKYPQAVFLEVDVHQCQGTAATNNISATPTFQFFR 82
Query: 65 EG 66
Sbjct: 83 NK 84
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 48.2 bits (115), Expect = 1e-07
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+++F A WC C+ M V+ + + + N +VDV ++ +F V A+PT
Sbjct: 38 VIDFTASWCGPCRIMAPVFADLA--KKFPNAVFLKVDVDELKPIAEQFSVEAMPTFL 92
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 48.1 bits (115), Expect = 1e-07
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V+F A WC K ++ + S + N+ +VDV ++ V ++PT F+
Sbjct: 35 VVDFSATWCGPSKMIKPFFHSLS--EKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFK 92
Query: 65 EG 66
+G
Sbjct: 93 KG 94
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 48.2 bits (115), Expect = 1e-07
Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+++F A WC C ++++ ++ + + +DV + P L+ + + ALPT +
Sbjct: 44 VIKFGAVWCKPCNKIKEYFKN---QLNYYYVTLVDIDVDIHPKLNDQHNIKALPTFEFYF 100
Query: 65 EG 66
Sbjct: 101 NL 102
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A
{Fasciola hepatica}
Length = 104
Score = 47.6 bits (114), Expect = 1e-07
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V+FFA WC C+ + + + + + A+VDV + + ++ VTA+PT +
Sbjct: 23 VVDFFAQWCGPCRNIAPKVEALA--KEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIK 80
Query: 65 EG 66
+G
Sbjct: 81 DG 82
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo
sapiens} PDB: 1xbs_A
Length = 149
Score = 48.8 bits (116), Expect = 1e-07
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
++ F P C Q++ + + S + VDV + + F ++ +P+
Sbjct: 27 VLRFGRDEDPVCLQLDDILSKTSSDLSK-MAAIYLVDVDQTAVYTQYFDISYIPSTV 82
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 50.5 bits (120), Expect = 1e-07
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSG-WAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
VEF+APWC CKQ+ +W + + NI +A++D T + V + PT+
Sbjct: 270 VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTAN--EVEAVKVHSFPTLK 326
Score = 28.1 bits (62), Expect = 2.9
Identities = 11/100 (11%), Positives = 23/100 (23%), Gaps = 2/100 (2%)
Query: 6 WMVEFFAPWCPACKQMEKVWQE-YSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQ 64
++ F ++ + + D T + + F +
Sbjct: 138 HILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAV 197
Query: 65 EGIRGNIERGYFNIAKEIEELFRVEHNFGQSFIASTFPEH 104
I E + E R+ F F+ H
Sbjct: 198 RLITLEEEMTKYKPESEELTAERIT-EFCHRFLEGKIKPH 236
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 47.7 bits (114), Expect = 2e-07
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+++F A WC C+ + V+ EY+ + +VDV ++ + V A+PT +
Sbjct: 32 IIDFTASWCGPCRVIAPVFAEYA--KKFPGAIFLKVDVDELKDVAEAYNVEAMPTFLFIK 89
Query: 65 EG 66
+G
Sbjct: 90 DG 91
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A
3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 47.3 bits (113), Expect = 2e-07
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V+F A WC CK ++ + S + N+ +VDV ++ V ++PT F+
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLS--EKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFFK 81
Query: 65 EG 66
+G
Sbjct: 82 KG 83
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 47.3 bits (113), Expect = 2e-07
Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+++FFA WC CK + ++ +++ N+ V +VDV ++ + ++++PT
Sbjct: 24 VLDFFATWCGPCKMISPKLVELSTQFAD-----NVVVLKVDVDECEDIAMEYNISSMPTF 78
Query: 62 -IFQEG 66
+ G
Sbjct: 79 VFLKNG 84
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 47.3 bits (113), Expect = 2e-07
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+F A WC CK + E + +Y+G + +VDV ++ +TA+PT
Sbjct: 28 VVDFTATWCGPCKMIAPLFETLSNDYAG-----KVIFLKVDVDAVAAVAEAAGITAMPTF 82
Query: 62 -IFQEG 66
++++G
Sbjct: 83 HVYKDG 88
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 47.8 bits (114), Expect = 2e-07
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V F++P CP CK M E+ +EY + ++++ +P + ++ V PT
Sbjct: 28 VVMFYSPACPYCKAMEPYFEEYAKEYGS-----SAVFGRINIATNPWTAEKYGVQGTPTF 82
Query: 62 -IFQEG 66
F G
Sbjct: 83 KFFCHG 88
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 48.9 bits (116), Expect = 3e-07
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSG---WAQDLNINVAQVDVTVSPGLSGRFMVTALPT-- 61
++ F P CP C ++ +++ A I V+ P + ++ V A+P
Sbjct: 138 ILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIV 197
Query: 62 IFQEGIRGNIERGYFNIAKEIEEL 85
I G G + +E+L
Sbjct: 198 IQVNGEDRVEFEGAYPEKMFLEKL 221
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 47.4 bits (113), Expect = 3e-07
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+++F A WC C+ + V+ EY+ + +VDV ++ ++ V A+PT +
Sbjct: 40 IIDFTASWCGPCRFIAPVFAEYA--KKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIK 97
Query: 65 EG 66
+G
Sbjct: 98 DG 99
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 47.0 bits (112), Expect = 4e-07
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
++ FFA WC AC +K+ + Y I + +VD+ + L+ +F V +LPT
Sbjct: 46 VLYFFAKWCQACTMQSTEMDKLQKYYGK-----RIYLLKVDLDKNESLARKFSVKSLPTI 100
Query: 62 -IFQEG 66
+ +
Sbjct: 101 ILLKNK 106
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 48.3 bits (115), Expect = 4e-07
Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLN--INVAQVDVTVSPGLSGRFMVTALPTIF 63
W V F++P C C + W+E+ A++++ + + V+ L V + P++F
Sbjct: 117 WFVNFYSPGCSHCHDLAPTWREF---AKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLF 173
Query: 64 QEGIRGNIERGYFNIAKEIEELFRVEHNFGQSFIASTFPEHSTTI 108
R + +N + E L +F T +
Sbjct: 174 --IFRSGMAAVKYNGDRSKESL--------VAFAMQHVRSTVTEL 208
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 46.6 bits (111), Expect = 4e-07
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+V+F A WC C+ + + + + + N+ +VD ++ + + A+PT
Sbjct: 42 VVDFTASWCGPCRFIAPFFADLA--KKLPNVLFLKVDTDELKSVASDWAIQAMPTFM 96
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae}
PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 46.1 bits (110), Expect = 6e-07
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V+F+A WC CK + + +++S Q + ++DV ++ + V+A+PT +F+
Sbjct: 28 VVDFYATWCGPCKMIAPMIEKFS--EQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFK 85
Query: 65 EG 66
G
Sbjct: 86 NG 87
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 46.2 bits (110), Expect = 6e-07
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+++F+A WC CK M+ + ++ + DV SP ++ VTA+PT + +
Sbjct: 34 VIDFYATWCGPCKMMQPHLTKLI--QAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGK 91
Query: 65 EG 66
+G
Sbjct: 92 DG 93
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 46.2 bits (110), Expect = 6e-07
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+ F A WC CK +E+ ++ + + + A+VD + + + V LPT I +
Sbjct: 41 VAWFTAVWCGPCKTIERPMEKIA--YEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIAR 98
Query: 65 EG 66
G
Sbjct: 99 SG 100
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 45.8 bits (109), Expect = 6e-07
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+F+A WC C+ + E++ +EY G + VA++DV +P + R+ V ++PT
Sbjct: 22 LVDFWAEWCAPCRMIAPILEEIAKEYEG-----KLLVAKLDVDENPKTAMRYRVMSIPTV 76
Query: 62 -IFQEG 66
+F++G
Sbjct: 77 ILFKDG 82
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP:
c.47.1.1
Length = 112
Score = 45.8 bits (109), Expect = 7e-07
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQ 64
+V+FFA WC CK++ ++E S + +VDV ++ + +T++PT +++
Sbjct: 30 IVDFFAEWCGPCKRIAPFYEECS--KTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYK 87
Query: 65 EG 66
G
Sbjct: 88 NG 89
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 45.8 bits (109), Expect = 8e-07
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+F+A WC CK + E++ E + ++ VA++DV +P + F V ++PT
Sbjct: 34 LVDFWATWCGPCKMVAPVLEEIATERAT-----DLTVAKLDVDTNPETARNFQVVSIPTL 88
Query: 62 -IFQEG 66
+F++G
Sbjct: 89 ILFKDG 94
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 45.4 bits (108), Expect = 1e-06
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+F A WC CK + EK+ + G + +A+VD+ L+ + V+A+PT
Sbjct: 35 VVDFHAQWCGPCKILGPRLEKMVAKQHG-----KVVMAKVDIDDHTDLAIEYEVSAVPTV 89
Query: 62 -IFQEG 66
+ G
Sbjct: 90 LAMKNG 95
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 45.0 bits (107), Expect = 1e-06
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+ +A WC C +KV ++Y G +++V + ++ ++ V +PT
Sbjct: 25 LVDCWAEWCAPCHLYEPIYKKVAEKYKG-----KAVFGRLNVDENQKIADKYSVLNIPTT 79
Query: 62 -IFQEG 66
IF G
Sbjct: 80 LIFVNG 85
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 45.0 bits (107), Expect = 1e-06
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+F+A WC C+ M E+ + ++ + VA+++V +P + +F + ++PT
Sbjct: 21 LVDFWAAWCGPCRMMAPVLEEFAEAHAD-----KVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 62 -IFQEG 66
+F+ G
Sbjct: 76 ILFKGG 81
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 45.5 bits (108), Expect = 1e-06
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+F+A WC CK + +++ +EY G I + +VD L+G F + ++P+
Sbjct: 42 IVDFYADWCGPCKMVAPILDELAKEYDG-----QIVIYKVDTEKEQELAGAFGIRSIPSI 96
Query: 62 -IFQEG 66
Sbjct: 97 LFIPME 102
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 45.0 bits (107), Expect = 1e-06
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+F+A WC C+Q+ E + EY I + ++++ +PG + ++ V ++PT
Sbjct: 27 LVDFWAAWCGPCRQIAPSLEAIAAEYGD-----KIEIVKLNIDENPGTAAKYGVMSIPTL 81
Query: 62 -IFQEG 66
++Q G
Sbjct: 82 NVYQGG 87
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 44.6 bits (106), Expect = 1e-06
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Query: 2 LQGEWMVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVT 57
G +V+F+A C CK + E++ +Y G ++ ++DV +P + ++ V
Sbjct: 18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEG-----KADILKLDVDENPSTAAKYEVM 72
Query: 58 ALPT--IFQEG 66
++PT +F++G
Sbjct: 73 SIPTLIVFKDG 83
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea}
SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 44.5 bits (106), Expect = 2e-06
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
MV+F+APWC CK + +++ +EYSG I V +++ +PG++ ++ + ++PT
Sbjct: 22 MVDFWAPWCGPCKLIAPVIDELAKEYSG-----KIAVYKLNTDEAPGIATQYNIRSIPTV 76
Query: 62 -IFQEG 66
F+ G
Sbjct: 77 LFFKNG 82
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 46.6 bits (110), Expect = 2e-06
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQE 65
+ F C C + +++ + I +D + + L+ +F V +P I
Sbjct: 139 EIWVFVTTSCGYCPSAAVMAWDFA--LANDYITSKVIDASENQDLAEQFQVVGVPKIVIN 196
Query: 66 G 66
Sbjct: 197 K 197
Score = 41.6 bits (97), Expect = 8e-05
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 8 VEFFAPWCPACKQMEKVWQE----YSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+ A C +C+ E++ +E I + + ++ V +PTI
Sbjct: 27 LFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTI 85
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 43.8 bits (104), Expect = 3e-06
Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+F+APWC C+ + +++ EY + +++ SP ++ + + ++PT
Sbjct: 23 LVDFWAPWCGPCRIIAPVVDEIAGEYKD-----KLKCVKLNTDESPNVASEYGIRSIPTI 77
Query: 62 -IFQEG 66
+F+ G
Sbjct: 78 MVFKGG 83
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 43.8 bits (104), Expect = 3e-06
Identities = 19/66 (28%), Positives = 39/66 (59%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+F+APWC C+ + E++ +EY G + V +V+V +P + ++ + ++PT
Sbjct: 23 LVDFWAPWCGPCRMIAPIIEELAKEYEG-----KVKVVKVNVDENPNTAAQYGIRSIPTL 77
Query: 62 -IFQEG 66
+F+ G
Sbjct: 78 LLFKNG 83
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2,
protein structure initiative, midwest CENT structural
genomics; 1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 43.8 bits (104), Expect = 3e-06
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V F C C+++ E++ Y + VDV L RF + +P
Sbjct: 26 LVMFSRKNCHVCQKVTPVLEELRLNYEE-----SFGFYYVDVEEEKTLFQRFSLKGVPQI 80
Query: 62 -IFQEG 66
F++G
Sbjct: 81 LYFKDG 86
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase;
1.00A {Acetobacter aceti}
Length = 107
Score = 43.8 bits (104), Expect = 4e-06
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+F+A WC CK + ++ +E++G + VA+V++ +P + V ++PT
Sbjct: 24 LVDFWAEWCGPCKMIGPALGEIGKEFAG-----KVTVAKVNIDDNPETPNAYQVRSIPTL 78
Query: 62 -IFQEG 66
+ ++G
Sbjct: 79 MLVRDG 84
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 43.8 bits (104), Expect = 4e-06
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V F+A WC C+ M YS + V ++++ +P ++ V +P
Sbjct: 29 LVYFWASWCGPCQLMSPLINLAANTYSD-----RLKVVKLEIDPNPTTVKKYKVEGVPAL 83
Query: 62 -IFQEG 66
+ +
Sbjct: 84 RLVKGE 89
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 44.5 bits (105), Expect = 4e-06
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+F+A WC CK + E++ +EY+G I + +V+V P L+ F + ++PT
Sbjct: 55 IVDFYADWCGPCKMVAPILEELSKEYAG-----KIYIYKVNVDKEPELARDFGIQSIPTI 109
Query: 62 -IFQEG 66
Sbjct: 110 WFVPMK 115
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 43.4 bits (103), Expect = 5e-06
Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+F+A WC CK + +++ EY G + VA++++ +PG + ++ + +PT
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 62 -IFQEG 66
+F+ G
Sbjct: 79 LLFKNG 84
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 43.9 bits (104), Expect = 5e-06
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+F+A WC K + +++ EY G + VA++++ +PG + ++ + +PT
Sbjct: 44 LVDFWAEWCGPAKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRGIPTL 98
Query: 62 -IFQEG 66
+F+ G
Sbjct: 99 LLFKNG 104
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 45.4 bits (107), Expect = 6e-06
Identities = 10/67 (14%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 6 WMVEFFAPWCPACKQ--MEKVWQEYSGWAQDLNINVAQVDVT-----VSPGLSGRFMV-- 56
+V+F + KQ +++ + + ++ VA+V ++ ++ LS ++ +
Sbjct: 25 VLVKFDTQYPYGEKQDEFKRLAENSAS---SDDLLVAEVGISDYGDKLNMELSEKYKLDK 81
Query: 57 TALPTIF 63
+ P +
Sbjct: 82 ESYPVFY 88
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 43.1 bits (102), Expect = 6e-06
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 12/66 (18%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+F+A WC C + E++ ++Y + +++ +P ++ R+ V +LPT
Sbjct: 20 VVDFWAEWCAPCLILAPIIEELAEDYP------QVGFGKLNSDENPDIAARYGVMSLPTV 73
Query: 62 -IFQEG 66
F++G
Sbjct: 74 IFFKDG 79
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 43.2 bits (102), Expect = 6e-06
Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+V+FFA WC C+++ ++ + + ++ +VDV + + + V+++P +F
Sbjct: 27 LVDFFATWCGPCQRLGQILPSIA--EANKDVTFIKVDVDKNGNAADAYGVSSIPALF 81
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo
PSI-2, protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 43.6 bits (103), Expect = 7e-06
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 7 MVEFFAPWCPACKQMEKV--WQEYSGWAQDLNINVAQVDVTVSPG--LSGRFMVTALPTI 62
V+ F WC CK++ KV + + ++D+ G L ++ V A PT+
Sbjct: 31 FVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTL 90
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 43.0 bits (102), Expect = 7e-06
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+ +F+APWC K + E++ QE + + ++DV + +G++ V ++PT
Sbjct: 21 LADFWAPWCGPSKMIAPVLEELDQEMGD-----KLKIVKIDVDENQETAGKYGVMSIPTL 75
Query: 62 -IFQEG 66
+ ++G
Sbjct: 76 LVLKDG 81
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 42.3 bits (100), Expect = 1e-05
Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV-SPGLSGRFMVTALPT--IF 63
+++ F WC K M +++ + + L++ ++D + L+ + +PT I
Sbjct: 28 VLDMFTQWCGPSKAMAPKYEKLA--EEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKIL 85
Query: 64 QEG 66
+E
Sbjct: 86 KEN 88
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing,
alternative splicing, FBP interacting repressor, RRM,
electron transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 43.7 bits (103), Expect = 1e-05
Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 11/66 (16%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT- 61
+V+F+A WC CK + +++ EY G + VA++++ +PG + ++ + +PT
Sbjct: 34 LVDFWAEWCGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNPGTAPKYGIRGIPTL 88
Query: 62 -IFQEG 66
+F+ G
Sbjct: 89 LLFKNG 94
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 42.0 bits (99), Expect = 2e-05
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 7 MVEFFAPWCPACKQM----EKVWQEYSGWAQDLNINVAQVDVTV-SPGLSGRFMVTALPT 61
+++ F WC CK M EK+ +EY + ++D + L+ + +PT
Sbjct: 41 VLDMFTQWCGPCKAMAPKYEKLAEEYLD------VIFLKLDCNQENKTLAKELGIRVVPT 94
Query: 62 --IFQEG 66
I +E
Sbjct: 95 FKILKEN 101
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 41.8 bits (98), Expect = 3e-05
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 9/65 (13%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS-----PGLSGRFMVT---A 58
++ F A WC C+ ++K + + + V + V LS +
Sbjct: 33 LLVFGANWCTDCRALDKSLRNQK-NTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDG 91
Query: 59 LPTIF 63
+P +
Sbjct: 92 IPAVV 96
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 40.4 bits (94), Expect = 1e-04
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDL-NINVAQVDVTVSPGLSGRFMV-TALPTIF 63
MV WC ACK ++ + E + ++ N + ++ P +P I
Sbjct: 50 MVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRIL 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 2e-04
Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 38/140 (27%)
Query: 61 TIF--QEGIRGNIERGYFNIAKEIEELFRVEHNFGQSFI---ASTFPEHSTTIQCNVLML 115
IF Q GN + YF +E+ +L++ H I A T E
Sbjct: 158 AIFGGQ----GNTDD-YF---EELRDLYQTYHVLVGDLIKFSAETLSELIR--------- 200
Query: 116 ISEIQNKKMHNKMMEDYGIPAW---------GSYTIFAMVTI-MIGAL-LGLLLVFIIDQ 164
+ + +K+ + + I W Y + ++ +IG + L +V
Sbjct: 201 -TTLDAEKVFTQGLN---ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 165 IYPPSAVVKK-SSVTKKKKG 183
+ P + T +G
Sbjct: 257 GFTPGELRSYLKGATGHSQG 276
Score = 28.9 bits (64), Expect = 2.2
Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 41/161 (25%)
Query: 87 RVEH-----NFGQSFIASTFPEHSTTIQCNVLMLISEIQNKKMHNKMMEDYGIPAWGSYT 141
R+ F F+ P HS + ++ ++ + +D IP + ++
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN-AKDIQIPVYDTFD 464
Query: 142 IFAMVTIMIGA----LLGLLLVFIIDQI--YP---PSAVVKKSS--VTKKKKGKDLGA-K 189
G+ L G + I+D I P + K++ + D G
Sbjct: 465 ---------GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL-------DFGPGG 508
Query: 190 DSDVETDESDLRDDTG---LIEGTVTTKVLPLRIQRTGYKK 227
S + +D TG ++ GT+ G+K+
Sbjct: 509 ASGLGVLTHRNKDGTGVRVIVAGTLDIN----PDDDYGFKQ 545
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 39.0 bits (91), Expect = 2e-04
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 12/92 (13%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI--FQ 64
++ + P C + + + + + V + LPTI ++
Sbjct: 27 IIHLYRSSIPMCLLVNQHLSLLA--RKFPETKFVKAIVN---SCIQHYHDNCLPTIFVYK 81
Query: 65 EG-----IRGNIERGYFNIAKEIEELFRVEHN 91
G G IE G N+ E E E
Sbjct: 82 NGQIEAKFIGIIECGGINLKLEELEWKLAEVG 113
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 38.7 bits (90), Expect = 4e-04
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 14/70 (20%)
Query: 7 MVEF-FAPWCPACKQMEKVWQEYSGWAQDLNINV--AQVDVTVSPG-----------LSG 52
+ F + WC C +M+ + S + +++ +VD L
Sbjct: 51 GLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKA 110
Query: 53 RFMVTALPTI 62
++ VT P +
Sbjct: 111 QYKVTGFPEL 120
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 38.7 bits (89), Expect = 8e-04
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYS---GWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+ P CP C + ++ + I V+ +P ++ ++ V ++P+I
Sbjct: 142 IETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIA 201
Query: 64 QEG 66
G
Sbjct: 202 ING 204
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody,
allergy, IGE, conformational diversity,
multispecficity, redox-active center; 2.77A
{Escherichia coli} SCOP: c.47.1.1
Length = 123
Score = 37.1 bits (86), Expect = 0.001
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 25/80 (31%)
Query: 7 MVEFFAPWC--------------PACKQM----EKVWQEYSGWAQDLNINVAQVDVTVSP 48
+V+F+A WC CK + +++ EY G + VA++++ +P
Sbjct: 25 LVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG-----KLTVAKLNIDQNP 79
Query: 49 GLSGRFMVTALPT--IFQEG 66
G + ++ + +PT +F+ G
Sbjct: 80 GTAPKYGIRGIPTLLLFKNG 99
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 36.5 bits (84), Expect = 0.001
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 7 MVEFFAPWCPACKQMEK-VWQEYSG--WAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
++ F P C C + + + +Y + + Q+ + PGL VT PT
Sbjct: 22 LLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFV 81
Query: 64 QEGIRGNIERGYF 76
+ G++E G
Sbjct: 82 L--MAGDVESGRL 92
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 37.1 bits (86), Expect = 0.001
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
++ + P C + + + + + V + LPTIF
Sbjct: 34 VIHLYRSSVPMCLVVNQHLSVLA--RKFPETKFVKAIVN---SCIEHYHDNCLPTIF 85
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 37.3 bits (86), Expect = 0.001
Identities = 5/42 (11%), Positives = 14/42 (33%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSP 48
MV C + ++KV+ + + +++
Sbjct: 48 MVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHET 89
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.002
Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 21/138 (15%)
Query: 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
E + + A W W+ + I + ++V F L ++F
Sbjct: 334 AESIRDGLATW--------DNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFD--RL-SVF 381
Query: 64 QEGIRGNI-----ERGYFNIAKEIEELFRVEHNFGQSFIASTFPEHSTTIQCNVLMLISE 118
+I +F++ K + V S + E + +I L L +
Sbjct: 382 PPSA--HIPTILLSLIWFDVIKSDVMVV-VNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 119 IQNKK-MHNKMMEDYGIP 135
++N+ +H +++ Y IP
Sbjct: 439 LENEYALHRSIVDHYNIP 456
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA,
thiol-disulfide oxidoreductase, DISU bond, redox-active
center; 1.58A {Salmonella enterica subsp} PDB: 1a23_A
1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A
1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A*
3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Length = 191
Score = 37.6 bits (86), Expect = 0.002
Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 5/128 (3%)
Query: 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS-PGLSGRFMVTALPTIFQEG 66
+EFF+ +CP C Q E+V + L V G G+ + A G
Sbjct: 26 LEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQAWAVAMALG 85
Query: 67 IRGNIERGYFNIAKEIEELFRVEHNFGQSFIASTFPEHSTTIQCNVLMLISEIQNKKMHN 126
+ + F A + + + + + F+ + N ++ S +
Sbjct: 86 VEDKVTVPLFE-AVQKTQTVQSAADIRKVFVDAGVKGEDYDAAWNSFVVKSLVAQ---QE 141
Query: 127 KMMEDYGI 134
K D +
Sbjct: 142 KAAADLQL 149
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin;
thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase,
ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella
enterica subsp}
Length = 189
Score = 36.9 bits (84), Expect = 0.002
Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 4/136 (2%)
Query: 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVS-PGLSGRFMVTALPTIFQEG 66
VEFF+ +CP C + L V VS G G + A
Sbjct: 19 VEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSLLGPLGHELTRAWALAMVMK 78
Query: 67 IRGNIERGYFNIAKEIEELFRVEHNFGQSFIASTFPEHSTTIQCNVLMLISEIQNKKMHN 126
IE+ +F + L + A+ + +
Sbjct: 79 ETDVIEKAFFTAGMVEKRLHSPDDVRRVFMSATGISRGEYDRSIKSPAVNDMVAL---QE 135
Query: 127 KMMEDYGIPAWGSYTI 142
++ ++YG+ S +
Sbjct: 136 RLFKEYGVRGTPSVYV 151
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 35.7 bits (83), Expect = 0.003
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 25/85 (29%)
Query: 2 LQGEW-MVEFFAPWCPACKQ----MEKVWQEYSG-----------------WAQDLNINV 39
LQG+ ++ F+ PWCP C + +V + N+N
Sbjct: 22 LQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNF 81
Query: 40 AQV-DVTVSPGLSGRFMVTALPTIF 63
+ D + R+ V P
Sbjct: 82 TNLNDADGV--IWARYNVPWQPAFV 104
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure
initiative; 1.76A {Thermus thermophilus}
Length = 154
Score = 35.8 bits (83), Expect = 0.004
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 2 LQGEWMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINV 39
+ ++ F+A WC CK + +V +E ++
Sbjct: 29 VSKPAVIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISREP 70
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics
consortium, TBSGC; 1.60A {Mycobacterium tuberculosis}
SCOP: c.47.1.10 PDB: 3ios_A
Length = 136
Score = 35.3 bits (82), Expect = 0.005
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 2 LQGE-WMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVD 43
L G+ ++ F+APWCP C+ + +V + + VA +D
Sbjct: 23 LLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE---VTFVGVAGLD 66
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 35.8 bits (82), Expect = 0.006
Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 4/127 (3%)
Query: 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGI 67
EFF+ +CP C E + + + + V+ G G+ M A T+ +
Sbjct: 23 SEFFSFYCPHCNTFEPIIAQLKQQLPE-GAKFQKNHVSFMGGNMGQAMSKAYATMIALEV 81
Query: 68 RGNIERGYFNIAKEIEELFRVEHNFGQSFIASTFPEHSTTIQCNVLMLISEIQNKKMHNK 127
+ FN + + + E Q F+ N + S ++ +K
Sbjct: 82 EDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRR---FDK 138
Query: 128 MMEDYGI 134
+D G+
Sbjct: 139 QFQDSGL 145
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 35.4 bits (81), Expect = 0.010
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEG 66
++EFFA CP C +E + ++ WA+ +V V ++ + + T+
Sbjct: 29 VLEFFAYTCPHCAAIEPMVED---WAKTAPQDVVLKQVPIAFNAGMKPLQQLYYTLQALE 85
Query: 67 IRGNIERGYFNI 78
+ + I
Sbjct: 86 RPDLHPKVFTAI 97
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 33.9 bits (77), Expect = 0.010
Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 9/98 (9%)
Query: 2 LQGEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVD-VTVSPGLSGRFMVTALP 60
L+ + A WCP C+ ++++ + Q + + T +T+ P
Sbjct: 11 LRQIGGTMYGAYWCPHCQDQKELFGA--AFDQVPYVECSPNGPGTPQAQECTEAGITSYP 68
Query: 61 TIFQEGIRGNIERGYFNIAKEIEEL--FRVEHNFGQSF 96
T I G G ++ + + + +E +
Sbjct: 69 TWI---INGRTYTGVRSL-EALAVASGYPLEEGRLEHH 102
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 34.5 bits (80), Expect = 0.012
Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 35/116 (30%)
Query: 2 LQGEW-MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPG------- 49
L+G+ + F+ WC CK+ M ++ + + + + V+V S
Sbjct: 24 LKGKGVFLNFWGTWCEPCKKEFPYMANQYKHF----KSQGVEIVAVNVGESKIAVHNFMK 79
Query: 50 ---------------LSGRFMVTALPTIF---QEGIRGNIERGYFNIAKEIEELFR 87
+ + V+ LPT F EG + G I +
Sbjct: 80 SYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMT-ESMIHDYMN 134
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide
oxidoreductase, oxidoreductase, protein disulfide
isomerase, protein folding, thioredoxin; 2.4A
{Escherichia coli} SCOP: c.47.1.13
Length = 197
Score = 34.8 bits (79), Expect = 0.014
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 8 VEFFAPWCPACKQMEKVWQEYSGWAQDL--NINVAQVDVTVSPGLSGRFMVTALPTIFQE 65
+EFF+ +CP C Q E+V + L + + + V G G+ + A
Sbjct: 118 LEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAWAVAMAL 177
Query: 66 GIRGNIERGYFN 77
G+ + F
Sbjct: 178 GVEDKVTVPLFE 189
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 34.2 bits (77), Expect = 0.019
Identities = 17/129 (13%), Positives = 35/129 (27%), Gaps = 7/129 (5%)
Query: 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGI 67
E FA C C+ ME +Q+ ++ ++ +T + M +
Sbjct: 27 TEVFALSCGHCRNMENFLPV---ISQEAGTDIGKMHITFNQSAHIASMFYY--AAEMQVD 81
Query: 68 RGNIERGYFNIAKEIEELFRVEHNFGQSFIASTFPEHSTTIQCNVLMLISEIQNKKM--H 125
++ + Q + F + + KK+
Sbjct: 82 GAPDHAFMEDLFAATQMGEGTTLTEQQEAYSKAFTSRGLVSPYDFNEEQRDTLIKKVDNA 141
Query: 126 NKMMEDYGI 134
+ E GI
Sbjct: 142 KMLSEKSGI 150
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 33.8 bits (78), Expect = 0.019
Identities = 14/112 (12%), Positives = 38/112 (33%), Gaps = 29/112 (25%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSG-------------------WAQDLNINVAQVD 43
++ +A WC C+ ++++ ++Y+G + Q+
Sbjct: 34 YIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLH 93
Query: 44 VTVSPGLSGRFMVTALPTIF---QEG-IRGNIERGYFN--IAKEIEELFRVE 89
+ +++ +P ++G I + A++ EL +E
Sbjct: 94 MGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLE 145
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 34.3 bits (78), Expect = 0.020
Identities = 20/130 (15%), Positives = 32/130 (24%), Gaps = 7/130 (5%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEG 66
+VE F CP C + Q W +V V G A G
Sbjct: 29 VVEIFGYTCPHCAHFDSKLQA---WGARQAKDVRFTLVPAVFGGVWDPFARAYLAADVLG 85
Query: 67 IRGNIERGYFNIAKEIEELFRVEHNFGQSFIASTFPEHSTTIQCNVLMLIS-EIQNK-KM 124
+ F E+ N G +A + + V E++ + +
Sbjct: 86 VAKRSHTAMFEAIH--EKGSVPIQNVGPDELAVFYAGYGVQPDRFVATFNGPEVEKRFQA 143
Query: 125 HNKMMEDYGI 134
Sbjct: 144 ARAYALKVRP 153
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 33.4 bits (77), Expect = 0.023
Identities = 14/111 (12%), Positives = 37/111 (33%), Gaps = 32/111 (28%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPG------------- 49
++ F++ C CK+ + + +Y + +++ + + + PG
Sbjct: 33 LIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQ 92
Query: 50 ---------LSGRFMVTALPTIF---QEG-IRGNI--ERGYFNIAKEIEEL 85
L+ F +P + + G +R G + K + +
Sbjct: 93 PIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV 143
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 34.0 bits (78), Expect = 0.026
Identities = 5/45 (11%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 6 WMVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTV 46
++ + WC C+ ++ + +E + + V
Sbjct: 62 VILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINV 106
>3gl3_A Putative thiol:disulfide interchange protein DSBE;
oxidoreductase, PSI-II, structural genomics, protein
structure initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 33.4 bits (77), Expect = 0.028
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNI 37
++F+A WC C+Q M ++ +Y + +
Sbjct: 32 YLDFWASWCGPCRQSFPWMNQMQAKYKA--KGFQV 64
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 33.3 bits (76), Expect = 0.031
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSG 30
++ F A WCP+C ++++ ++Y
Sbjct: 41 ILWFMAAWCPSCVYMADLLDRLTEKYRE 68
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative;
1.66A {Chlorobaculum tepidum}
Length = 165
Score = 33.5 bits (77), Expect = 0.033
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 2 LQGEW-MVEFFAPWCPACKQ----MEKVWQEYSG 30
L+G+ +V FFA WCP C+ M +V + ++
Sbjct: 32 LKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWAS 65
>2l5o_A Putative thioredoxin; structural genomics, unknown function,
PSI-2, protein struct initiative; NMR {Neisseria
meningitidis serogroup B}
Length = 153
Score = 33.0 bits (76), Expect = 0.033
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 2 LQGEW-MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNI 37
LQG+ ++ F+ P CP C + K +Y ++ +
Sbjct: 26 LQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKN--KNFQV 64
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
redox-active center, transcription regulator; HET: MSE
GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Length = 192
Score = 33.2 bits (75), Expect = 0.044
Identities = 18/128 (14%), Positives = 36/128 (28%), Gaps = 6/128 (4%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEG 66
+VE F CP C E W++ L +V V + G T+ G
Sbjct: 29 VVELFWYGCPHCYAFEPTIVP---WSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMG 85
Query: 67 IRGNIERGYFNIAKEIEELFRVEHNFGQSFIASTFPEHSTTIQCNVLMLISEIQNKKMHN 126
+ ++ F + + + N + +++
Sbjct: 86 VEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEK---AK 142
Query: 127 KMMEDYGI 134
K+ Y +
Sbjct: 143 KLAMAYQV 150
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 32.8 bits (75), Expect = 0.045
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 2 LQGEW-MVEFFAPWCPACKQ----MEKVWQEYSG 30
L+ +V +A WC C++ M K ++
Sbjct: 22 LKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKK 55
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 32.6 bits (74), Expect = 0.047
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 6/62 (9%)
Query: 7 MVEFFAPWCPACKQMEK-VWQEYSGWAQDLNIN--VAQVDVTVSPG--LSGRFMVTALPT 61
M+ AC+ + + VW + + QV G + + P
Sbjct: 46 MINIQNVQDFACQCLNRDVWSN-EAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPY 104
Query: 62 IF 63
+
Sbjct: 105 VS 106
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 32.3 bits (74), Expect = 0.059
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSG 30
++ F+ WCP CK+ + + +
Sbjct: 38 ILHFWTSWCPPCKKELPQFQSFYDAHPS 65
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 32.5 bits (74), Expect = 0.064
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 41/120 (34%)
Query: 7 MVEFFAPWCPACKQ-----MEKVWQEYSG-------------------------WAQDLN 36
+VE F CP C +K+ + + +
Sbjct: 34 VVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFG 93
Query: 37 IN--VA---QVDVTVSPGLSGRFMVTALPTIF---QEG-IRGNI--ERGYFNIAKEIEEL 85
I VA + P ++ + P+I ++G IR + F + + L
Sbjct: 94 IKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSL 153
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 33.0 bits (75), Expect = 0.066
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNI 37
+++F+A C C++ + +Q Y L +
Sbjct: 86 LIDFWAYSCINCQRAIPHVVGWYQAYKD--SGLAV 118
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative;
1.80A {Rhodopseudomonas palustris}
Length = 137
Score = 32.0 bits (72), Expect = 0.067
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 4 GEWMVEFFAP---WCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALP 60
G+ +V FF P + V E + A+V GL RF V P
Sbjct: 33 GKIVVLFFRGDAVRFPEAADLAVVLPELINAFPG-RLVAAEVAAEAERGLMARFGVAVCP 91
Query: 61 TI--FQEG 66
++ Q
Sbjct: 92 SLAVVQPE 99
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 32.3 bits (73), Expect = 0.068
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLN 36
M++F C C++ME + +N
Sbjct: 51 MLDFTGYGCVNCRKMELAVWTDPKVSSIIN 80
>1zma_A Bacterocin transport accessory protein;
alpha-beta-alpha-sandwich, structural genomics, PSI,
protein structure initiative; HET: MSE; 1.25A
{Streptococcus pneumoniae} SCOP: c.47.1.1
Length = 118
Score = 31.9 bits (72), Expect = 0.071
Identities = 3/39 (7%), Positives = 10/39 (25%), Gaps = 3/39 (7%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT 45
CP C++ + ++ ++
Sbjct: 33 TFFIGRKTCPYCRKFAGTLSGV---VAETKAHIYFINSE 68
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase;
1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A
2fy6_A
Length = 164
Score = 32.0 bits (73), Expect = 0.081
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDVTVSPG 49
+++F+A WCP C EK Q+ + + N+ V
Sbjct: 42 LIKFWASWCPLCLSELGQAEKWAQDA----KFSSANLITVASPGFLH 84
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 31.9 bits (73), Expect = 0.098
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNI 37
+V F+A WCP C+ M+++ + + DL +
Sbjct: 45 LVNFWASWCPYCRDEMPSMDRLVKSFPK--GDLVV 77
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 31.5 bits (72), Expect = 0.11
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDV 44
++ F+ C C+Q + W + + I V ++
Sbjct: 35 ILFFWDSQCGHCQQETPKLYDWWLKN----RAKGIQVYAANI 72
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 31.5 bits (72), Expect = 0.13
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSG 30
+V F+A WCP C++ M ++ +G
Sbjct: 32 IVNFWATWCPPCREEIPSMMRLNAAMAG 59
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58}
PDB: 3dvw_A 3a3t_A
Length = 193
Score = 31.7 bits (71), Expect = 0.15
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 7 MVEFFAPWCPACKQMEKVWQEY 28
++EFF +CP C +E V ++
Sbjct: 28 VLEFFGYFCPHCAHLEPVLSKH 49
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural
genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 31.2 bits (71), Expect = 0.15
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 2 LQGEW-MVEFFAPWCPACKQ-----MEKVWQEYSG 30
L+G+ ++E F CP C +KV +
Sbjct: 26 LRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPE 60
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain
700825 / FA 1090), DSBC, structural genomics, unknown
funct 2; 2.00A {Neisseria gonorrhoeae}
Length = 147
Score = 31.2 bits (70), Expect = 0.17
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQ 33
+ F P CP CK++E +++ +
Sbjct: 18 VAVFSDPDCPFCKRLEHEFEKMTDVTV 44
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria
meningitidis serogroup B} PDB: 3dvx_A
Length = 195
Score = 31.4 bits (70), Expect = 0.19
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 7 MVEFFAPWCPACKQMEKVWQEY 28
++EFF +C C + + +
Sbjct: 26 VLEFFGYFCVHCHHFDPLLLKL 47
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 30.7 bits (70), Expect = 0.24
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSG 30
+V+F+ C C++ + K + +
Sbjct: 33 LVDFWFAGCSWCRKETPYLLKTYNAFKD 60
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 30.4 bits (69), Expect = 0.31
Identities = 7/42 (16%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVDV 44
++ F+A WC + ++++ +EY ++ N + + +
Sbjct: 37 LLNFWASWCDPQPEANAELKRLNKEYK---KNKNFAMLGISL 75
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 31.2 bits (69), Expect = 0.32
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVD-VTVSPGLSGRFMVTALPTIFQE 65
+ A WCP C+ ++++ + Q + + T +T+ PT
Sbjct: 201 GTMYGAYWCPHCQDQKELFGA--AFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWI-- 256
Query: 66 GIRGNIERGYFNIAKEIEEL--FRVEHNFGQSF 96
I G G ++ + + + +E +
Sbjct: 257 -INGRTYTGVRSL-EALAVASGYPLEEGRLEHH 287
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 30.0 bits (68), Expect = 0.39
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNI 37
M++F A WC C++ +EK D +
Sbjct: 37 MLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFAL 71
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 29.5 bits (67), Expect = 0.43
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSG 30
++F+A WC C +++ +E
Sbjct: 26 YLKFWASWCSICLASLPDTDEIAKEAGD 53
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 29.6 bits (67), Expect = 0.48
Identities = 13/108 (12%), Positives = 35/108 (32%), Gaps = 30/108 (27%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSG----------------WAQDLN----INVAQV 42
+++F + +++ +Y+ W + + V
Sbjct: 39 LIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDA 98
Query: 43 DVTVSPGLSGRFMVTALPTIF---QEG-IRGNIERGYFNIAKEIEELF 86
+ S + VT LP++F + + E ++ + I++L
Sbjct: 99 NGAYSS-YISLYNVTNLPSVFLVNRNNELSARGENI-KDLDEAIKKLL 144
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
periplasm, redox-active center, oxidoreductase; HET:
PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Length = 195
Score = 29.9 bits (66), Expect = 0.49
Identities = 10/126 (7%), Positives = 34/126 (26%), Gaps = 1/126 (0%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEG 66
+++ F+ CP C + +K + + + I ++
Sbjct: 21 LIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLETKGEYGKQASEVFAVLINKDK 80
Query: 67 IRGNIERGYFNIAKEIEE-LFRVEHNFGQSFIASTFPEHSTTIQCNVLMLISEIQNKKMH 125
G + K+ + + H+ + + P + + +
Sbjct: 81 AAGISLFDANSQFKKAKFAYYAAYHDKKERWSDGKDPAAFIKTGLDAAGMSQADFEAALK 140
Query: 126 NKMMED 131
+++
Sbjct: 141 EPAVQE 146
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote
structural genomics, structural genomics consortium,
SGC, U function; 1.73A {Plasmodium yoelii}
Length = 160
Score = 29.7 bits (66), Expect = 0.50
Identities = 8/56 (14%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+ F + P C +M+++ + + ++ + + VD+T P + + + ++
Sbjct: 46 IRFGHDYDPDCMKMDELLYKVADDIKNFCV-IYLVDITEVPDFNTMYELYDPVSVM 100
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like,
thiol-disulfide exchange, cell inner membrane, CYT
C-type biogenesis, disulfide bond; 1.75A {Pseudomonas
aeruginosa} PDB: 3kh9_A
Length = 176
Score = 29.6 bits (67), Expect = 0.62
Identities = 7/20 (35%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 2 LQGE-WMVEFFAPWCPACKQ 20
L+G+ +V + WCP+C+
Sbjct: 56 LKGKPALVNVWGTWCPSCRV 75
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold,
cytochrome C maturation, atomic resolution
oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP:
c.47.1.10
Length = 156
Score = 29.2 bits (66), Expect = 0.71
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 2 LQGE-WMVEFFAPWCPACKQ 20
+G+ +V +A WC C
Sbjct: 40 FKGKVSLVNVWASWCVPCHD 59
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 29.3 bits (66), Expect = 0.71
Identities = 2/28 (7%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSG 30
++ F+A + + + ++
Sbjct: 36 LLNFWAAYDAESRARNVQLANEVNKFGP 63
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 29.3 bits (66), Expect = 0.73
Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 36/116 (31%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSG--------------------WAQDLNINVAQV 42
+V +A WC C++ ++++ + SG + ++ N+
Sbjct: 64 LVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGY 123
Query: 43 ----DVTVSPGLSGRFMVTALPTIF---QEG-----IRGNIERGYFNIAKEIEELF 86
V L +PT +G I G E + K I
Sbjct: 124 FNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT 179
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 28.6 bits (64), Expect = 1.1
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNI 37
F A WCP C+ + ++ E + I
Sbjct: 30 GFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEI 64
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal
thioredoxin-like domain, N-terminal beta-sheet,
fingerprint rigion, oxidoreductase; 1.90A {Escherichia
coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Length = 168
Score = 28.8 bits (65), Expect = 1.1
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 6 WMVEFFAPWCPACKQ 20
++ +A WCP C+
Sbjct: 54 VLLNVWATWCPTCRA 68
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 27.9 bits (62), Expect = 1.4
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 193 VETDESDLRDDTGLIEGTVTTKVLPLRIQRTGYK 226
V+ E L D L+ T+ ++ + ++ TG +
Sbjct: 46 VQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQ 79
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 28.9 bits (64), Expect = 1.5
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTAL 59
+ F P+CP CK + WQ+ W + + + V V S L
Sbjct: 101 VYVFADPFCPYCK---QFWQQARPWVDSGKVQLRTLLVGVIKPESPATAAAIL 150
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 27.9 bits (62), Expect = 2.2
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEY 28
F A WCP C+ + + ++++
Sbjct: 52 FFYFSASWCPPCRGFTPQLVEFYEKH 77
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Shigella flexneri 2A} PDB: 2hfd_A
Length = 140
Score = 27.7 bits (61), Expect = 2.5
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 14 WCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPT--IFQEG 66
P + E D VA D+ S + RF P +F G
Sbjct: 47 RTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGG 101
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 27.4 bits (61), Expect = 2.7
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 25/82 (30%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSG--------------------WAQDLNINVAQV 42
F A WCP + + ++ ++ + +
Sbjct: 32 FFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPF 91
Query: 43 -DVTVSPGLSGRFMVTALPTIF 63
D L+ F V ++PT+
Sbjct: 92 EDRKGMEFLTTGFDVKSIPTLV 113
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 27.3 bits (61), Expect = 2.9
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 7 MVEFFAPWCPACKQ 20
++ P C AC +
Sbjct: 35 LLFINNPGCHACAE 48
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 27.3 bits (61), Expect = 3.0
Identities = 6/44 (13%), Positives = 20/44 (45%), Gaps = 9/44 (20%)
Query: 7 MVEFFAPWCPACKQ------MEKVWQEYSGWAQDLNINVAQVDV 44
++ F+A W + Q + +++++Y + I + + +
Sbjct: 37 LINFWASWNDSISQKQSNSELREIYKKYKK---NKYIGMLGISL 77
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment,
WW domain, triple-standed beta-sheet, alpha-helix,
nucleus, phosphorylation; NMR {Homo sapiens}
Length = 52
Score = 25.8 bits (56), Expect = 3.1
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 216 LPLRIQRTGYKKA-SYCKNKPYLFNNNNNRLEWKV 249
LP + G++K S +N+PY FN N+ W++
Sbjct: 6 LPEELVHAGWEKCWSRRENRPYYFNRFTNQSLWEM 40
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 27.3 bits (61), Expect = 3.2
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 7/29 (24%)
Query: 7 MVEFFAPWCPACKQ-------MEKVWQEY 28
M+ F+ P C C++ + +
Sbjct: 31 MLFFYDPDCSNCRKFEKLFAEIPAFVEMV 59
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi
DSS-3, thioredoxin-like, oxidoreductase, structural
genomics, PSI-2; HET: MSE; 1.76A {Silicibacter
pomeroyi}
Length = 175
Score = 27.3 bits (61), Expect = 3.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 7 MVEFFAPWCPACKQMEKVWQE 27
+VEFF CP C++ Q
Sbjct: 26 VVEFFDYNCPYCRRAMAEVQG 46
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 26.6 bits (58), Expect = 4.2
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 8/57 (14%)
Query: 13 PWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSG-------RFMVTALPTI 62
WCP C Q E V +E + V P VTA+PT+
Sbjct: 41 SWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTL 96
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 26.5 bits (59), Expect = 5.2
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYS 29
+ F A WCP C+ + + ++++
Sbjct: 32 FLYFSASWCPPCRGFTPVLAEFYEKHH 58
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB:
1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 26.6 bits (59), Expect = 5.8
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 4/27 (14%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYS 29
F A WCP + + + + ++
Sbjct: 32 FFYFSASWCPPARGFTPQLIEFYDKFH 58
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury
coordination, metal transport; 1.02A {Saccharomyces
cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A
2ggp_A 3k7r_A
Length = 73
Score = 25.1 bits (55), Expect = 6.9
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 184 KDLGAKDSDVETDESDLRDDTGLIEGTVTTKVLPLRIQRTGYK 226
K L + DV + L + T+ + +I++TG +
Sbjct: 24 KVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKE 66
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO
HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B*
1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B*
2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B*
3abl_B* 3abm_B* 3ag1_B* ...
Length = 227
Score = 26.4 bits (59), Expect = 7.5
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 114 MLISEIQNKKMHNKMMEDYGIP-AWGSYTIF-AMVTIMIGALLGLLLVFIIDQIYPPSAV 171
++ + K H M+ + W TI A++ I+I AL L +++++D+I PS
Sbjct: 41 IISLMLTTKLTHTSTMDAQEVETIW---TILPAIILILI-ALPSLRILYMMDEINNPSLT 96
Query: 172 VK 173
VK
Sbjct: 97 VK 98
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus
pyogenes} PDB: 3eif_A*
Length = 926
Score = 26.9 bits (59), Expect = 7.8
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 36 NINVAQVDVTVSPGLSGRFMVTALPTIFQEGIRGNIERGYF 76
+ +T+ S + V + F + + ++ GYF
Sbjct: 540 LYETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYF 580
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.412
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,841,701
Number of extensions: 221134
Number of successful extensions: 658
Number of sequences better than 10.0: 1
Number of HSP's gapped: 580
Number of HSP's successfully gapped: 179
Length of query: 250
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,160,982
Effective search space: 661596138
Effective search space used: 661596138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)