RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9732
(250 letters)
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE
{Salmonella typhimurium [TaxId: 90371]}
Length = 119
Score = 48.8 bits (116), Expect = 2e-08
Identities = 11/60 (18%), Positives = 17/60 (28%)
Query: 4 GEWMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
G ++ P + E + VA D+ S + RF V P
Sbjct: 31 GVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATL 90
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE
{Escherichia coli [TaxId: 562]}
Length = 132
Score = 46.2 bits (109), Expect = 3e-07
Identities = 11/58 (18%), Positives = 16/58 (27%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
++ P + E D VA D+ S + RF V P
Sbjct: 39 VLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATL 96
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 122
Score = 44.2 bits (104), Expect = 1e-06
Identities = 9/86 (10%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 6 WMVEFFAPWCPACKQM--EKVWQEYSGWAQDL--NINVAQVDVTVSPGLSGRFM--VTAL 59
+V+F + KQ +++ + + L + ++ ++ LS ++ +
Sbjct: 24 VLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESY 83
Query: 60 PTIFQEGIRGNIERGYFNIAKEIEEL 85
P + ++ A ++ +
Sbjct: 84 PVFYLFRDGDFENPVPYSGAVKVGAI 109
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 122
Score = 43.5 bits (102), Expect = 2e-06
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 7/66 (10%)
Query: 6 WMVEFFAPWCPACKQME--KVWQEYSGWAQDLNI---NVAQVDVTVSPGLSGRF--MVTA 58
+V+F K + +DL I V + L R+
Sbjct: 22 SVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKN 81
Query: 59 LPTIFQ 64
P+IF
Sbjct: 82 FPSIFL 87
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 124
Score = 42.5 bits (99), Expect = 5e-06
Identities = 7/64 (10%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 6 WMVEFFAPWC------PACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTAL 59
+ + P + E + + + +D + VD ++ + +T
Sbjct: 31 LALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEE 90
Query: 60 PTIF 63
+I+
Sbjct: 91 DSIY 94
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like
protein {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 85
Score = 41.2 bits (96), Expect = 6e-06
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 10 FFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
F +P CP C +V E D I+V ++D+ V + + + A+P I
Sbjct: 8 FTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVDREKAIEYGLMAVPAIA 60
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus
acidocaldarius, formerly Bacillus acidocaldarius
[TaxId: 405212]}
Length = 105
Score = 38.6 bits (89), Expect = 8e-05
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+V+F+A WC C+ M V +E++ D + VA+++V +P + +F + ++PT+
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDENPETTSQFGIMSIPTLI 76
>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin
containing protein Txnl5) {Human (Homo sapiens) [TaxId:
9606]}
Length = 119
Score = 35.6 bits (81), Expect = 0.001
Identities = 11/73 (15%), Positives = 18/73 (24%), Gaps = 5/73 (6%)
Query: 12 APWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGIRGNI 71
WCP C Q E V +E + V P +
Sbjct: 37 KSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKPYWKDPNNDFR----KNLKVTAVP 91
Query: 72 ERGYFNIAKEIEE 84
+ +++ E
Sbjct: 92 TLLKYGTPQKLVE 104
>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 107
Score = 35.3 bits (80), Expect = 0.002
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+V+F+APWC C+ + V + + +++ SP ++ + + ++PTI
Sbjct: 22 VLVDFWAPWCGPCRIIAPVV-DEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIM 78
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase
subunit F (AhpF), N-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 96
Score = 34.7 bits (79), Expect = 0.002
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 2 LQGEWMVE-FFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALP 60
+ G++ E +++ C C + + + + I +D V +P
Sbjct: 13 IDGDFEFETYYSLSCHNCPDVVQALNLMA--VLNPRIKHTAIDGGTFQNEITERNVMGVP 70
Query: 61 TIFQEG 66
+F G
Sbjct: 71 AVFVNG 76
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId:
1167]}
Length = 108
Score = 34.8 bits (79), Expect = 0.002
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+V F+A WC C+ M + + D + V ++++ +P ++ V +P +
Sbjct: 23 VLVYFWASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDPNPTTVKKYKVEGVPALR 79
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin F [TaxId: 3562]}
Length = 112
Score = 35.1 bits (80), Expect = 0.002
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+++ F WC CK M +++ + I + + L+ + +PT
Sbjct: 28 VVLDMFTQWCGPCKAMAPKYEKLA-EEYLDVIFLKLDCNQENKTLAKELGIRVVPTFK 84
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 34.7 bits (79), Expect = 0.002
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+V+F C C ++ + + +VDV G + ++A PT
Sbjct: 25 VVKFTMRGCGPCLRIAPAFSSM--SNKYPQAVFLEVDVHQCQGTAATNNISATPTF 78
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 35.8 bits (82), Expect = 0.003
Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 14/95 (14%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEG 66
+V + C + + + A+ + ++ + + RF LPT+
Sbjct: 124 VVNIYEDGVRGCDALNSSLECLA--AEYPMVKFCKIRASNTG-AGDRFSSDVLPTLL--- 177
Query: 67 IRGNIERGYFNIAKEIEELFRVEHNFGQSFIASTF 101
+ + I V F + F A+
Sbjct: 178 --------VYKGGELISNFISVAEQFAEDFFAADV 204
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing
protein C330018D20Rik {Mouse (Mus musculus) [TaxId:
10090]}
Length = 100
Score = 34.0 bits (77), Expect = 0.003
Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 6/83 (7%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEG 66
+ F CP C + ++V Q + + + + + R+
Sbjct: 19 LTLFTKAPCPLCDEAKEVLQP---YKDRFILQEVDITLPENSTWYERYKFDIPVFHLN-- 73
Query: 67 IRGNIERGYFNIAKEIEELFRVE 89
+ N +K ++L ++
Sbjct: 74 -GQFLMMHRVNTSKLEKQLRKLS 95
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 33.7 bits (76), Expect = 0.006
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLN--INVAQVDVTVSPGLSGRFMVTALPTI- 62
+VEF+APWC CK + + + +G + I +A+VD T L+ ++ V PTI
Sbjct: 27 LLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIK 86
Query: 63 -FQEGIRGNIERGYFNIAKEIEEL 85
F+ G + +E +++
Sbjct: 87 FFRNG--DTASPKEYTAGREADDI 108
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 112
Score = 33.3 bits (75), Expect = 0.007
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+V+F A WC CK + +++ S + +VDV ++ +TA+PT
Sbjct: 27 IVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDAVAAVAEAAGITAMPTFH 83
>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Escherichia coli [TaxId: 562]}
Length = 195
Score = 33.8 bits (77), Expect = 0.009
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQV 42
++EFF+ +CP C Q E+V + L V
Sbjct: 117 VLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMT 152
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
tremula), thioredoxin H [TaxId: 113636]}
Length = 113
Score = 32.5 bits (73), Expect = 0.014
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+V+F A WCP CK + ++ E + ++ +VDV ++ + V A+PT
Sbjct: 30 VVDFTASWCPPCKMIAPIFAELAKKFPNVTFL--KVDVDELKAVAEEWNVEAMPTFI 84
>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}
Length = 108
Score = 32.1 bits (72), Expect = 0.019
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+V+F+A WC CK + + E + + VA++++ +PG + ++ + +PT+
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIA-DEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 79
>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 32.0 bits (72), Expect = 0.019
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+V+F A WC CK ++ + S ++ +VDV ++ V +PT
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL--EVDVDDCQDVASECEVKCMPTFQ 78
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like
protein {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 85
Score = 31.1 bits (69), Expect = 0.029
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+ F +P CP C ++V +E + D + + + + A+PTI
Sbjct: 6 IELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQK-AMEYGIMAVPTIV 61
>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 119
Score = 31.4 bits (70), Expect = 0.032
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+ EFFAPWC CK M + + + + NI +AQ+D T + L + P++
Sbjct: 30 VLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLK 87
>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 140
Score = 31.7 bits (71), Expect = 0.035
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+V ++APWC CK++ +QE + + +V + + ++ PTI
Sbjct: 33 VLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIV 90
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 31.0 bits (69), Expect = 0.052
Identities = 3/23 (13%), Positives = 5/23 (21%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYS 29
CP C++
Sbjct: 30 TFFIGRKTCPYCRKFAGTLSGVV 52
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 30.9 bits (69), Expect = 0.069
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
++ F W P C +M++V + ++ + VD+T P + + + T+
Sbjct: 25 VVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVI-YLVDITEVPDFNKMYELYDPCTVM 81
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator
(DsbA) {Escherichia coli [TaxId: 562]}
Length = 188
Score = 31.1 bits (69), Expect = 0.070
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTV 46
++EFF+ +CP C Q E+V + L V V
Sbjct: 22 VLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV 61
>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 30.9 bits (69), Expect = 0.077
Identities = 6/86 (6%), Positives = 23/86 (26%), Gaps = 7/86 (8%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPG----LSGRFMVTALPTI 62
M+ AC+ + + + + V + + P +
Sbjct: 46 MINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYV 105
Query: 63 FQEGIRGNIER---GYFNIAKEIEEL 85
R + +++ ++++
Sbjct: 106 SILDPRTGQKLVEWHQLDVSSFLDQV 131
>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 103
Score = 30.2 bits (67), Expect = 0.087
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
+V+FFA WC CK++ ++E S + VD ++ + +T++PT
Sbjct: 21 VIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVD--EVSEVTEKENITSMPTF 75
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi
(Humicola insolens) [TaxId: 34413]}
Length = 116
Score = 29.8 bits (66), Expect = 0.12
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSG-WAQDLNINVAQVDVTVSPGLSGRFMVTALPTI-- 62
++EF+APWC CK + ++E +A+ + + + + PTI
Sbjct: 23 VLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIKL 82
Query: 63 FQEGIRGNIERGYFNIAKEIEEL 85
+ G +G ++ ++ +E+L
Sbjct: 83 YPAGAKGQPVT--YSGSRTVEDL 103
>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 107
Score = 29.1 bits (64), Expect = 0.20
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEY---SGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTI 62
++ F P CP C ++ ++ + A I V+ P + ++ V A+P I
Sbjct: 18 RILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKI 77
Query: 63 F 63
Sbjct: 78 V 78
>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 114
Score = 28.7 bits (63), Expect = 0.28
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+V+F A WC C+ + + + + ++ +VD ++ + + A+PT
Sbjct: 31 VVVDFTASWCGPCRFIAPFFADLAKKLPNVLFL--KVDTDELKSVASDWAIQAMPTFM 86
>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 28.7 bits (63), Expect = 0.42
Identities = 5/41 (12%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQVD 43
++ F++ C CK+ + + +Y + +++ + +
Sbjct: 33 LIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSE 73
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY,
DsbE) {Escherichia coli [TaxId: 562]}
Length = 136
Score = 28.1 bits (61), Expect = 0.60
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQD 34
++ +A WCP + + + S
Sbjct: 23 VLLNVWATWCPTSRAEHQYLNQLSAQGIR 51
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator
(DsbA) {Vibrio cholerae [TaxId: 666]}
Length = 181
Score = 28.5 bits (62), Expect = 0.65
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 7 MVEFFAPWCPACKQMEKVWQEY 28
+ EFF+ +CP C E + +
Sbjct: 22 VSEFFSFYCPHCNTFEPIIAQL 43
>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId:
5691]}
Length = 113
Score = 27.5 bits (60), Expect = 0.82
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+ F A WC CK +E+ ++ + + A+VD + + + V LPT
Sbjct: 29 TVAWFTAVWCGPCKTIERPMEKI--AYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFI 84
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide
reductase MsrA/MsrB, N-terminal domain {Neisseria
meningitidis serogroup A [TaxId: 65699]}
Length = 143
Score = 27.6 bits (60), Expect = 0.86
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINV 39
+++F+A WCP C ++++ A+ + N+
Sbjct: 27 LIKFWASWCPLCLSELGQTEKWAQDAKFSSANL 59
>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 27.5 bits (60), Expect = 0.91
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 7 MVEFFAPWCPACKQMEK-VWQEYSGWAQDLNINVAQVDVTVSPGLSGRFM 55
MV WC ACK ++ + N + ++ P
Sbjct: 29 MVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSP 78
>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770
{Enterococcus faecalis [TaxId: 1351]}
Length = 172
Score = 27.6 bits (60), Expect = 0.93
Identities = 9/60 (15%), Positives = 18/60 (30%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEG 66
M+EF CP C++ + +E + + + S + I
Sbjct: 28 MIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSA 87
>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 156
Score = 27.5 bits (60), Expect = 1.0
Identities = 8/90 (8%), Positives = 23/90 (25%), Gaps = 2/90 (2%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEG 66
+ F C C ++ + +Y+ A + + + + M +
Sbjct: 30 ITVFTDITCGYCHKLHEQMADYN--ALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNK 87
Query: 67 IRGNIERGYFNIAKEIEELFRVEHNFGQSF 96
++ G + + G
Sbjct: 88 AFDDVMAGKSVAPASCDVDIADHYALGVQL 117
>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 111
Score = 26.0 bits (56), Expect = 2.1
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
+++FFA WC CK + E S D N+ V +VDV ++ + ++++PT
Sbjct: 29 VLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDECEDIAMEYNISSMPTFV 84
>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin M [TaxId: 3562]}
Length = 104
Score = 25.7 bits (55), Expect = 3.2
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIF 63
MV+F+APWC CK + V E + I V +++ +PG++ ++ + ++PT+
Sbjct: 20 VMVDFWAPWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDEAPGIATQYNIRSIPTVL 76
>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC,
C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Length = 150
Score = 25.5 bits (55), Expect = 4.7
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 7 MVEFFAPWCPACKQMEKVWQEY 28
+ F C C + + +EY
Sbjct: 30 VTVFMDITCHYCHLLHQQLKEY 51
>g1qqp.1 b.121.4.1 (4:,2:) Aphthovirus (Foot-and-mouth disease
virus) coat proteins {FMDV (Foot-and-mouth disease
virus), strain bfs, 1860 [TaxId: 12110]}
Length = 289
Score = 26.0 bits (57), Expect = 5.1
Identities = 10/105 (9%), Positives = 26/105 (24%), Gaps = 18/105 (17%)
Query: 25 WQEYSGWAQDLNINVAQVDVTVSPGLSGRFMVTALPTIFQEGIR-----GNIERGYFNIA 79
Y+ ++ +V + G +V +P + R + N
Sbjct: 166 TDSYAYMRNGWDV---EVTAVGNQFNGGCLLVAMVPELCSIQKRELYQLTLFPHQFINPR 222
Query: 80 KEIEELFRVEHNFGQSFIASTFPEHSTTIQCN---VLMLISEIQN 121
+ V + V+M+++ +
Sbjct: 223 TNMTAHITVPF-------VGVNRYDQYKVHKPWTLVVMVVAPLTV 260
>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 105
Score = 25.0 bits (54), Expect = 5.2
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 5/83 (6%)
Query: 10 FFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVD---VTVSPGLSGRFMVTALPTIFQEG 66
F P CP C++ +++ + L + L +P +F
Sbjct: 17 FIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGK 76
Query: 67 --IRGNIERGYFNIAKEIEELFR 87
I G + + E+ +
Sbjct: 77 ECIGGCTDLESMHKRGELLTRLQ 99
>d1xcra1 d.290.1.2 (A:3-315) Hypothetical protein PTD012 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 313
Score = 25.5 bits (56), Expect = 6.1
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 8/26 (30%)
Query: 73 RGYFNIAKEIEELFRVE-----HNFG 93
GYF A E L+R++ H+ G
Sbjct: 289 LGYFLPA---EFLYRIDQPKETHSIG 311
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit
{Methylococcus capsulatus [TaxId: 414]}
Length = 512
Score = 25.6 bits (56), Expect = 6.4
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 6 WMVEFFAPWCPACKQMEKVWQEYSGW 31
W FF P ++ME Y GW
Sbjct: 340 WPTGFFRLALPDQEEMEWFEANYPGW 365
>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata
[TaxId: 5656]}
Length = 144
Score = 25.2 bits (54), Expect = 6.5
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 25/82 (30%)
Query: 7 MVEFFAPWCPACKQ----MEKVWQEYSGWAQDLNINVAQ--------------------- 41
F A WCP + + ++ ++ + ++
Sbjct: 32 FFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPF 91
Query: 42 VDVTVSPGLSGRFMVTALPTIF 63
D L+ F V ++PT+
Sbjct: 92 EDRKGMEFLTTGFDVKSIPTLV 113
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 166
Score = 24.9 bits (53), Expect = 7.8
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 7 MVEFFAPWCPACKQMEKVWQEYS 29
++ WCP C+
Sbjct: 58 LLVAGEMWCPDCQINLAALDFAQ 80
>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 77
Score = 23.8 bits (52), Expect = 7.8
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 8 VEFFAPWCPACKQMEKVWQEYSGWAQDLNINVAQVDVT 45
++ + C C+ +EK +E ++L I+ +
Sbjct: 4 IQIYGTGCANCQMLEKNAREA---VKELGIDAEFEKIK 38
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex
{Chlamydomonas reinhardtii [TaxId: 3055]}
Length = 156
Score = 24.7 bits (54), Expect = 8.2
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 132 YGIPAWGSYTIFAMVTIMIGALLGLLLVFIID 163
YG PAW + ++ +++G ++ + ++D
Sbjct: 24 YGEPAWPNDLLYMFPVVILGTFACVIGLSVLD 55
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I
{Cow (Bos taurus) [TaxId: 9913]}
Length = 514
Score = 25.1 bits (55), Expect = 8.7
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 9/36 (25%)
Query: 140 YTIFAMVTIMIGALLGLLL---------VFIIDQIY 166
Y +F M+G L LL+ + DQIY
Sbjct: 19 YLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIY 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.412
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 950,540
Number of extensions: 42799
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 55
Length of query: 250
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,268,006
Effective search space: 211757002
Effective search space used: 211757002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)