BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9733
         (86 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UYS|A Chain A, Crystal Structure Of Apo Human Ck1d
 pdb|3UYS|B Chain B, Crystal Structure Of Apo Human Ck1d
 pdb|3UYS|C Chain C, Crystal Structure Of Apo Human Ck1d
 pdb|3UYS|D Chain D, Crystal Structure Of Apo Human Ck1d
 pdb|3UYT|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
           Form
 pdb|3UYT|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
           Form
 pdb|3UYT|C Chain C, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
           Form
 pdb|3UYT|D Chain D, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
           Form
 pdb|3UZP|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
           Form
 pdb|3UZP|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
           Form
 pdb|4HNF|A Chain A, Crystal Structure Of Ck1d In Complex With Pf4800567
 pdb|4HNF|B Chain B, Crystal Structure Of Ck1d In Complex With Pf4800567
 pdb|4HGT|A Chain A, Crystal Structure Of Ck1d With Compound 13
 pdb|4HGT|B Chain B, Crystal Structure Of Ck1d With Compound 13
          Length = 296

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 35/48 (72%)

Query: 32  FPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLYHNN 79
           +P+EFA YLN+CR LRF++ PDY YLRQLFR LF      YDY++  N
Sbjct: 246 YPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWN 293


>pdb|1CKJ|A Chain A, Casein Kinase I Delta Truncation Mutant Containing
           Residues 1-317 Complex With Bound Tungstate
 pdb|1CKJ|B Chain B, Casein Kinase I Delta Truncation Mutant Containing
           Residues 1-317 Complex With Bound Tungstate
 pdb|1CKI|A Chain A, Recombinant Casein Kinase I Delta Truncation Mutant
           Containing Residues 1-317
 pdb|1CKI|B Chain B, Recombinant Casein Kinase I Delta Truncation Mutant
           Containing Residues 1-317
          Length = 317

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 35/48 (72%)

Query: 32  FPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLYHNN 79
           +P+EFA YLN+CR LRF++ PDY YLRQLFR LF      YDY++  N
Sbjct: 244 YPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWN 291


>pdb|4HNI|A Chain A, Crystal Structure Of Ck1e In Complex With Pf4800567
 pdb|4HNI|B Chain B, Crystal Structure Of Ck1e In Complex With Pf4800567
 pdb|4HOK|A Chain A, Crystal Structure Of Apo Ck1e
 pdb|4HOK|C Chain C, Crystal Structure Of Apo Ck1e
 pdb|4HOK|E Chain E, Crystal Structure Of Apo Ck1e
 pdb|4HOK|G Chain G, Crystal Structure Of Apo Ck1e
 pdb|4HOK|I Chain I, Crystal Structure Of Apo Ck1e
 pdb|4HOK|K Chain K, Crystal Structure Of Apo Ck1e
 pdb|4HOK|M Chain M, Crystal Structure Of Apo Ck1e
 pdb|4HOK|O Chain O, Crystal Structure Of Apo Ck1e
 pdb|4HOK|Q Chain Q, Crystal Structure Of Apo Ck1e
 pdb|4HOK|S Chain S, Crystal Structure Of Apo Ck1e
 pdb|4HOK|U Chain U, Crystal Structure Of Apo Ck1e
 pdb|4HOK|W Chain W, Crystal Structure Of Apo Ck1e
          Length = 296

 Score = 65.5 bits (158), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 35/48 (72%)

Query: 32  FPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLYHNN 79
           +P+EF+ YLN+CR LRF++ PDY YLRQLFR LF      YDY++  N
Sbjct: 246 YPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWN 293


>pdb|3SV0|A Chain A, Crystal Structure Of Casein Kinase-1 Like Protein In Plant
          Length = 483

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 32  FPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLY 76
           +P EFA Y +YCR LRF++ PDY YL++LFR LF     Q+DY++
Sbjct: 244 YPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGFQFDYVF 288


>pdb|2CMW|A Chain A, Structure Of Human Casein Kinase 1 Gamma-1 In Complex With
           2-(2-Hydroxyethylamino)-6-(3-Chloroanilino)-9-
           Isopropylpurine (Casp Target)
          Length = 310

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 27/46 (58%)

Query: 31  SFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLY 76
           +FP E A YL Y R L F E PDY YLR LF  LF    + +DY Y
Sbjct: 239 NFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFEKKGYTFDYAY 284


>pdb|2C47|A Chain A, Structure Of Casein Kinase 1 Gamma 2
 pdb|2C47|B Chain B, Structure Of Casein Kinase 1 Gamma 2
 pdb|2C47|C Chain C, Structure Of Casein Kinase 1 Gamma 2
 pdb|2C47|D Chain D, Structure Of Casein Kinase 1 Gamma 2
          Length = 313

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 27/46 (58%)

Query: 31  SFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLY 76
           +FP E A YL Y R L F E PDY YLR+LF  LF      +DY Y
Sbjct: 242 NFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRSGFVFDYEY 287


>pdb|4HGL|A Chain A, Crystal Structure Of Ck1g3 With Compound 1
 pdb|4HGS|A Chain A, Crystal Structure Of Ck1gs With Compound 13
          Length = 330

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 31  SFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLY 76
           +FP E A YL Y R L F E PDY YLR+LF  LF    + +DY Y
Sbjct: 247 NFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEY 291


>pdb|2CHL|A Chain A, Structure Of Casein Kinase 1 Gamma 3
          Length = 351

 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 31  SFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLY 76
           +FP E A YL Y R L F E PDY YLR+LF  LF    + +DY Y
Sbjct: 268 NFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEY 312


>pdb|2IZR|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
           Inhibitor
 pdb|2IZS|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
           Inhibitor
 pdb|2IZT|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
           Inhibitor
 pdb|2IZU|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
           Inhibitor
          Length = 330

 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 31  SFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLY 76
           +FP E A YL Y R L F E PDY YLR+LF  LF    + +DY Y
Sbjct: 247 NFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEY 291


>pdb|2CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Cki7
          Length = 297

 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 24/43 (55%)

Query: 31  SFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYD 73
            FP EF  Y++Y R L F+  PDY YL+ LF  +   LN   D
Sbjct: 247 GFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTED 289


>pdb|1EH4|A Chain A, Binary Complex Of Casein Kinase-1 From S. Pombe With An
           Atp Competitive Inhibitor, Ic261
 pdb|1EH4|B Chain B, Binary Complex Of Casein Kinase-1 From S. Pombe With An
           Atp Competitive Inhibitor, Ic261
 pdb|1CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Mgatp
          Length = 298

 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 24/43 (55%)

Query: 31  SFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYD 73
            FP EF  Y++Y R L F+  PDY YL+ LF  +   LN   D
Sbjct: 248 GFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTED 290


>pdb|3OP5|A Chain A, Human Vaccinia-Related Kinase 1
 pdb|3OP5|B Chain B, Human Vaccinia-Related Kinase 1
 pdb|3OP5|C Chain C, Human Vaccinia-Related Kinase 1
 pdb|3OP5|D Chain D, Human Vaccinia-Related Kinase 1
          Length = 364

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 4   DLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLF 61
           D  +VR+ +I  R  +  +    +   + P E A Y+   + L + E P Y  LR + 
Sbjct: 267 DPKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRDIL 324


>pdb|2LAV|A Chain A, Nmr Solution Structure Of Human Vaccinia-Related Kinase 1
          Length = 361

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 4   DLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLF 61
           D  +VR+ +I  R  +  +    +   + P E A Y+   + L + E P Y  LR + 
Sbjct: 267 DPKYVRDSKIRYRENIASLMDKCFPEKNKPGEIAKYMETVKLLDYTEKPLYENLRDIL 324


>pdb|2KTY|A Chain A, Solution Structure Of Human Vaccinia Related Kinase-1
 pdb|2KUL|A Chain A, Solution Structure Of Human Vaccinia Related Kinase
           1(Vrk1)
          Length = 368

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 4   DLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLF 61
           D  +VR+ +I  R  +  +    +   + P E A Y+   + L + E P Y  LR + 
Sbjct: 267 DPKYVRDSKIRYRENIASLMDKCFPEKNKPGEIAKYMETVKLLDYTEKPLYENLRDIL 324


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.463 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,540,884
Number of Sequences: 62578
Number of extensions: 81644
Number of successful extensions: 206
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 15
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)