Query psy9733
Match_columns 86
No_of_seqs 151 out of 1008
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 18:10:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1165|consensus 99.9 4.2E-26 9.2E-31 156.6 5.6 82 1-82 230-317 (449)
2 KOG1163|consensus 99.9 2.6E-23 5.7E-28 138.3 5.8 79 2-80 216-300 (341)
3 KOG1164|consensus 99.5 2.2E-13 4.7E-18 93.1 8.2 81 2-82 232-315 (322)
4 PHA02882 putative serine/threo 98.3 1.2E-06 2.5E-11 58.7 4.9 62 1-62 227-294 (294)
5 cd05067 PTKc_Lck_Blk Catalytic 96.8 0.0039 8.4E-08 40.6 5.5 60 3-63 200-259 (260)
6 cd05045 PTKc_RET Catalytic dom 96.3 0.023 5E-07 37.6 6.4 64 3-67 226-289 (290)
7 cd05072 PTKc_Lyn Catalytic dom 96.2 0.015 3.2E-07 37.8 5.3 60 3-63 201-260 (261)
8 cd05064 PTKc_EphR_A10 Catalyti 96.2 0.022 4.7E-07 37.3 5.8 62 2-64 204-265 (266)
9 cd05116 PTKc_Syk Catalytic dom 95.9 0.035 7.5E-07 36.1 5.8 61 3-64 195-255 (257)
10 cd05063 PTKc_EphR_A2 Catalytic 95.9 0.033 7.2E-07 36.2 5.7 62 3-65 207-268 (268)
11 cd05056 PTKc_FAK Catalytic dom 95.7 0.063 1.4E-06 35.0 6.4 65 2-67 204-268 (270)
12 cd05115 PTKc_Zap-70 Catalytic 95.6 0.051 1.1E-06 35.4 5.7 63 2-65 194-256 (257)
13 cd05102 PTKc_VEGFR3 Catalytic 95.6 0.064 1.4E-06 36.4 6.3 65 2-67 272-337 (338)
14 cd05106 PTKc_CSF-1R Catalytic 95.5 0.06 1.3E-06 37.5 6.1 63 2-65 310-373 (374)
15 cd06636 STKc_MAP4K4_6 Catalyti 95.4 0.031 6.8E-07 36.7 4.3 56 2-57 221-276 (282)
16 cd05069 PTKc_Yes Catalytic dom 95.3 0.094 2E-06 34.1 6.2 60 3-63 200-259 (260)
17 cd05073 PTKc_Hck Catalytic dom 95.3 0.077 1.7E-06 34.5 5.7 60 3-63 200-259 (260)
18 cd05054 PTKc_VEGFR Catalytic d 94.9 0.15 3.2E-06 35.0 6.3 64 3-67 272-336 (337)
19 cd05075 PTKc_Axl Catalytic dom 94.8 0.14 3.1E-06 33.2 6.0 61 3-64 211-271 (272)
20 cd05090 PTKc_Ror1 Catalytic do 94.7 0.17 3.6E-06 33.3 6.2 59 3-62 223-281 (283)
21 PHA02988 hypothetical protein; 94.7 0.2 4.3E-06 33.4 6.5 63 2-64 217-279 (283)
22 cd05043 PTK_Ryk Pseudokinase d 94.7 0.19 4.1E-06 32.9 6.3 64 3-67 216-279 (280)
23 cd05066 PTKc_EphR_A Catalytic 94.4 0.17 3.7E-06 33.0 5.6 62 2-64 205-266 (267)
24 cd05083 PTKc_Chk Catalytic dom 94.4 0.15 3.3E-06 32.9 5.3 60 2-62 193-252 (254)
25 cd05071 PTKc_Src Catalytic dom 94.2 0.27 5.9E-06 32.0 6.3 62 3-65 200-261 (262)
26 cd05033 PTKc_EphR Catalytic do 94.2 0.22 4.7E-06 32.4 5.8 61 3-64 205-265 (266)
27 cd05089 PTKc_Tie1 Catalytic do 94.1 0.35 7.6E-06 32.1 6.7 67 3-70 215-281 (297)
28 cd05044 PTKc_c-ros Catalytic d 93.9 0.3 6.4E-06 31.7 5.9 59 3-62 210-268 (269)
29 cd05098 PTKc_FGFR1 Catalytic d 93.9 0.42 9.2E-06 31.9 6.8 66 3-69 239-304 (307)
30 cd05035 PTKc_Axl_like Catalyti 93.8 0.28 6.1E-06 31.7 5.7 61 3-64 212-272 (273)
31 cd05065 PTKc_EphR_B Catalytic 93.6 0.28 6.2E-06 31.9 5.5 62 2-64 207-268 (269)
32 cd05057 PTKc_EGFR_like Catalyt 93.6 0.54 1.2E-05 30.8 6.9 64 3-67 208-271 (279)
33 cd05082 PTKc_Csk Catalytic dom 93.5 0.26 5.7E-06 31.8 5.2 61 2-63 195-255 (256)
34 cd05105 PTKc_PDGFR_alpha Catal 93.5 0.24 5.1E-06 35.1 5.2 64 2-66 335-399 (400)
35 cd05068 PTKc_Frk_like Catalyti 93.3 0.41 8.9E-06 31.0 5.8 60 3-63 201-260 (261)
36 cd08229 STKc_Nek7 Catalytic do 93.2 0.42 9.2E-06 30.9 5.8 63 2-64 201-265 (267)
37 cd05060 PTKc_Syk_like Catalyti 93.1 0.46 9.9E-06 30.7 5.8 61 3-64 195-255 (257)
38 cd05107 PTKc_PDGFR_beta Cataly 92.9 0.54 1.2E-05 33.4 6.4 62 3-65 338-400 (401)
39 cd05091 PTKc_Ror2 Catalytic do 92.9 0.51 1.1E-05 30.9 5.9 60 3-63 223-282 (283)
40 cd05088 PTKc_Tie2 Catalytic do 92.8 0.63 1.4E-05 31.1 6.3 66 3-69 220-285 (303)
41 cd05103 PTKc_VEGFR2 Catalytic 92.7 0.61 1.3E-05 31.9 6.3 65 2-67 277-342 (343)
42 cd05040 PTKc_Ack_like Catalyti 92.7 0.69 1.5E-05 29.7 6.2 60 3-62 197-256 (257)
43 cd05047 PTKc_Tie Catalytic dom 92.7 0.56 1.2E-05 30.6 5.8 63 2-65 207-269 (270)
44 cd05061 PTKc_InsR Catalytic do 92.5 0.76 1.7E-05 30.3 6.4 63 3-66 218-280 (288)
45 cd05055 PTKc_PDGFR Catalytic d 92.5 0.69 1.5E-05 30.9 6.2 61 3-64 240-301 (302)
46 cd05148 PTKc_Srm_Brk Catalytic 92.5 0.55 1.2E-05 30.3 5.6 60 3-63 201-260 (261)
47 KOG0192|consensus 92.3 0.95 2.1E-05 32.1 6.9 68 2-69 241-308 (362)
48 cd05034 PTKc_Src_like Catalyti 92.3 0.68 1.5E-05 29.8 5.9 60 3-63 201-260 (261)
49 cd05048 PTKc_Ror Catalytic Dom 92.3 0.49 1.1E-05 30.9 5.2 60 3-63 223-282 (283)
50 cd05093 PTKc_TrkB Catalytic do 92.1 1 2.2E-05 29.8 6.5 65 3-68 219-283 (288)
51 cd05039 PTKc_Csk_like Catalyti 92.0 0.6 1.3E-05 30.1 5.3 60 3-63 196-255 (256)
52 cd05046 PTK_CCK4 Pseudokinase 92.0 0.6 1.3E-05 30.4 5.4 60 3-62 215-274 (275)
53 cd05059 PTKc_Tec_like Catalyti 91.8 0.77 1.7E-05 29.7 5.7 58 3-61 198-255 (256)
54 cd05096 PTKc_DDR1 Catalytic do 91.2 0.65 1.4E-05 30.9 4.9 61 2-62 237-303 (304)
55 cd05100 PTKc_FGFR3 Catalytic d 91.1 1.6 3.6E-05 29.5 6.9 66 3-69 233-298 (334)
56 cd05104 PTKc_Kit Catalytic dom 91.1 0.9 1.9E-05 31.6 5.7 61 3-64 313-374 (375)
57 cd05070 PTKc_Fyn_Yrk Catalytic 91.0 1.2 2.7E-05 28.7 6.0 60 3-63 200-259 (260)
58 cd05085 PTKc_Fer Catalytic dom 91.0 1.1 2.4E-05 28.6 5.8 59 3-62 191-249 (250)
59 cd05094 PTKc_TrkC Catalytic do 90.9 1.6 3.5E-05 28.8 6.6 64 3-67 222-285 (291)
60 cd06628 STKc_MAPKKK_Byr2_like 90.9 0.82 1.8E-05 29.6 5.1 56 2-58 207-262 (267)
61 cd05087 PTKc_Aatyk1_Aatyk3 Cat 90.8 0.76 1.6E-05 29.9 4.9 59 2-61 205-267 (269)
62 cd06608 STKc_myosinIII_like Ca 90.3 0.74 1.6E-05 29.7 4.5 57 2-58 213-270 (275)
63 cd08228 STKc_Nek6 Catalytic do 90.1 1.5 3.3E-05 28.3 5.8 63 2-64 201-265 (267)
64 cd05052 PTKc_Abl Catalytic dom 90.1 1.6 3.5E-05 28.3 6.0 62 3-65 202-263 (263)
65 cd05080 PTKc_Tyk2_rpt2 Catalyt 89.4 1.8 3.9E-05 28.4 5.9 36 30-65 247-282 (283)
66 cd06631 STKc_YSK4 Catalytic do 89.1 1.4 3E-05 28.5 5.1 57 2-58 203-260 (265)
67 cd05032 PTKc_InsR_like Catalyt 89.0 1.7 3.7E-05 28.2 5.5 59 3-62 218-276 (277)
68 cd05058 PTKc_Met_Ron Catalytic 88.9 2.7 5.9E-05 27.0 6.3 63 3-66 199-261 (262)
69 cd05062 PTKc_IGF-1R Catalytic 88.8 1.9 4.2E-05 28.1 5.6 59 3-62 218-276 (277)
70 cd08217 STKc_Nek2 Catalytic do 88.6 1.6 3.5E-05 27.8 5.1 56 2-58 205-260 (265)
71 cd05049 PTKc_Trk Catalytic dom 88.6 2.2 4.7E-05 27.7 5.8 59 3-62 221-279 (280)
72 cd06618 PKc_MKK7 Catalytic dom 88.5 0.69 1.5E-05 30.7 3.4 75 2-78 213-289 (296)
73 cd05084 PTKc_Fes Catalytic dom 88.4 2 4.3E-05 27.5 5.4 60 2-62 192-251 (252)
74 cd06625 STKc_MEKK3_like Cataly 88.3 1.7 3.8E-05 27.9 5.1 58 1-58 201-258 (263)
75 KOG1026|consensus 88.1 3 6.6E-05 32.6 6.9 68 2-70 701-768 (774)
76 cd05111 PTK_HER3 Pseudokinase 87.6 4.9 0.00011 26.4 7.0 64 3-67 208-271 (279)
77 cd05036 PTKc_ALK_LTK Catalytic 86.7 4.1 9E-05 26.6 6.3 60 2-62 217-276 (277)
78 cd06617 PKc_MKK3_6 Catalytic d 86.3 2.1 4.4E-05 27.9 4.6 58 2-59 202-260 (283)
79 cd05110 PTKc_HER4 Catalytic do 86.2 5.8 0.00013 26.4 6.9 64 3-67 208-271 (303)
80 cd05042 PTKc_Aatyk Catalytic d 85.8 4.4 9.5E-05 26.2 6.0 58 3-61 206-267 (269)
81 cd08224 STKc_Nek6_Nek7 Catalyt 85.3 4.5 9.7E-05 26.0 5.8 63 2-64 201-265 (267)
82 KOG0197|consensus 85.0 5.4 0.00012 29.5 6.5 65 2-67 400-464 (468)
83 cd00192 PTKc Catalytic domain 84.2 4.2 9.2E-05 25.8 5.3 58 3-61 204-261 (262)
84 smart00220 S_TKc Serine/Threon 84.2 3.9 8.4E-05 25.4 5.1 58 2-59 181-240 (244)
85 cd05092 PTKc_TrkA Catalytic do 84.1 4.7 0.0001 26.4 5.6 60 2-62 220-279 (280)
86 cd05041 PTKc_Fes_like Catalyti 83.7 5.7 0.00012 25.3 5.8 59 3-62 192-250 (251)
87 cd05095 PTKc_DDR2 Catalytic do 83.6 5.7 0.00012 26.2 5.9 60 3-62 230-295 (296)
88 cd05113 PTKc_Btk_Bmx Catalytic 82.8 6.3 0.00014 25.4 5.7 58 3-61 198-255 (256)
89 cd08529 STKc_FA2-like Catalyti 82.7 4.3 9.3E-05 25.9 4.9 56 2-58 196-251 (256)
90 cd05097 PTKc_DDR_like Catalyti 82.6 6.3 0.00014 26.0 5.8 60 3-62 229-294 (295)
91 cd05101 PTKc_FGFR2 Catalytic d 82.6 8.9 0.00019 25.4 6.5 64 3-67 236-299 (304)
92 cd05050 PTKc_Musk Catalytic do 82.3 6.8 0.00015 25.6 5.8 59 3-62 229-287 (288)
93 cd06634 STKc_TAO2 Catalytic do 82.2 6.2 0.00014 26.3 5.7 58 2-59 209-266 (308)
94 cd06622 PKc_MAPKK_PBS2_like Ca 81.8 4.7 0.0001 26.3 4.9 58 2-59 202-261 (286)
95 PHA03259 Capsid triplex subuni 81.6 1.6 3.4E-05 30.4 2.6 36 49-84 50-105 (302)
96 cd06917 STKc_NAK1_like Catalyt 81.4 3.3 7.2E-05 26.9 4.1 57 2-59 197-254 (277)
97 cd05579 STKc_MAST_like Catalyt 80.7 3.4 7.3E-05 26.3 3.9 61 2-63 196-257 (265)
98 KOG1024|consensus 80.7 7.8 0.00017 28.7 5.9 62 2-64 494-555 (563)
99 cd08215 STKc_Nek Catalytic dom 80.4 6.9 0.00015 24.7 5.2 56 2-58 198-253 (258)
100 cd06632 STKc_MEKK1_plant Catal 80.1 6 0.00013 25.2 4.9 56 2-57 197-252 (258)
101 PF01802 Herpes_V23: Herpesvir 80.1 1.9 4.2E-05 29.9 2.7 36 49-84 50-105 (296)
102 KOG4257|consensus 80.1 1.8 3.9E-05 33.7 2.6 68 1-69 587-654 (974)
103 cd06653 STKc_MEKK3_like_1 Cata 79.8 5.2 0.00011 25.9 4.6 51 2-53 204-254 (264)
104 smart00219 TyrKc Tyrosine kina 79.7 6.8 0.00015 24.8 5.1 57 3-60 201-257 (258)
105 cd05122 PKc_STE Catalytic doma 79.2 5.7 0.00012 24.9 4.5 56 2-58 192-249 (253)
106 cd05108 PTKc_EGFR Catalytic do 79.1 13 0.00028 24.8 6.4 64 3-67 208-271 (316)
107 cd05099 PTKc_FGFR4 Catalytic d 78.9 17 0.00036 24.3 7.2 65 3-68 233-297 (314)
108 cd05074 PTKc_Tyro3 Catalytic d 78.9 13 0.00029 23.9 6.3 61 3-64 212-272 (273)
109 cd06616 PKc_MKK4 Catalytic dom 78.8 4.4 9.6E-05 26.5 4.0 58 2-59 205-266 (288)
110 cd06643 STKc_SLK Catalytic dom 78.5 7.3 0.00016 25.4 5.0 56 2-57 203-259 (282)
111 cd06641 STKc_MST3 Catalytic do 77.9 9.2 0.0002 24.9 5.3 57 2-59 196-252 (277)
112 PF07714 Pkinase_Tyr: Protein 77.9 5.9 0.00013 25.8 4.4 58 3-61 202-259 (259)
113 KOG0193|consensus 77.7 3.6 7.8E-05 31.5 3.6 66 1-67 587-656 (678)
114 cd08530 STKc_CNK2-like Catalyt 76.4 11 0.00023 24.0 5.2 56 2-58 196-251 (256)
115 cd01817 RGS12_RBD Ubiquitin do 75.4 4.6 9.9E-05 22.4 2.8 30 56-85 21-60 (73)
116 cd05109 PTKc_HER2 Catalytic do 74.5 18 0.00038 23.5 6.0 64 3-67 208-271 (279)
117 cd06633 STKc_TAO3 Catalytic do 73.8 9.9 0.00021 25.5 4.7 57 2-58 215-271 (313)
118 cd06606 STKc_MAPKKK Catalytic 73.5 9.6 0.00021 24.0 4.4 57 2-58 198-255 (260)
119 cd06614 STKc_PAK Catalytic dom 73.2 11 0.00023 24.7 4.7 56 2-58 211-268 (286)
120 cd08528 STKc_Nek10 Catalytic d 72.9 13 0.00029 23.9 5.1 60 2-61 208-267 (269)
121 cd06644 STKc_STK10_LOK Catalyt 72.7 14 0.00031 24.2 5.2 57 1-57 209-266 (292)
122 cd06630 STKc_MEKK1 Catalytic d 72.5 12 0.00025 24.1 4.7 57 2-58 203-262 (268)
123 cd06613 STKc_MAP4K3_like Catal 72.5 11 0.00023 24.1 4.5 57 2-58 199-258 (262)
124 cd06623 PKc_MAPKK_plant_like C 72.3 15 0.00033 23.3 5.2 57 2-59 195-255 (264)
125 cd06609 STKc_MST3_like Catalyt 72.0 13 0.00029 24.0 4.9 55 2-57 193-248 (274)
126 cd05053 PTKc_FGFR Catalytic do 71.5 25 0.00055 22.9 6.4 62 3-65 231-292 (293)
127 PHA03257 Capsid triplex subuni 71.4 4.6 0.0001 28.4 2.7 36 49-84 55-113 (316)
128 KOG0200|consensus 71.1 30 0.00065 26.2 7.1 65 2-67 517-582 (609)
129 cd05079 PTKc_Jak1_rpt2 Catalyt 71.0 23 0.0005 23.1 5.9 35 30-64 249-283 (284)
130 cd05632 STKc_GRK5 Catalytic do 70.5 9.2 0.0002 25.2 4.0 52 2-53 196-249 (285)
131 cd06605 PKc_MAPKK Catalytic do 70.5 18 0.00038 23.2 5.2 27 32-58 229-255 (265)
132 KOG4278|consensus 69.8 9.1 0.0002 30.1 4.1 42 30-71 489-530 (1157)
133 cd06610 STKc_OSR1_SPAK Catalyt 69.5 15 0.00033 23.4 4.7 55 2-57 202-261 (267)
134 cd06635 STKc_TAO1 Catalytic do 69.3 20 0.00044 24.0 5.5 59 2-60 219-277 (317)
135 cd06629 STKc_MAPKKK_Bck1_like 68.7 16 0.00035 23.5 4.8 56 2-57 207-266 (272)
136 cd05077 PTK_Jak1_rpt1 Pseudoki 67.9 23 0.00051 22.9 5.4 32 30-61 230-261 (262)
137 cd06640 STKc_MST4 Catalytic do 67.3 17 0.00037 23.6 4.7 56 2-58 196-251 (277)
138 cd06637 STKc_TNIK Catalytic do 67.2 20 0.00042 23.1 4.9 54 2-55 211-264 (272)
139 cd06638 STKc_myosinIIIA Cataly 67.0 20 0.00043 23.3 5.0 57 2-58 224-281 (286)
140 cd05051 PTKc_DDR Catalytic dom 66.7 28 0.00061 22.7 5.7 60 3-62 230-295 (296)
141 cd06607 STKc_TAO Catalytic dom 65.8 19 0.00042 23.9 4.8 58 2-59 209-266 (307)
142 cd06657 STKc_PAK4 Catalytic do 65.2 25 0.00054 23.3 5.2 58 2-59 211-269 (292)
143 PTZ00283 serine/threonine prot 64.3 22 0.00048 26.0 5.1 57 2-59 240-296 (496)
144 cd06645 STKc_MAP4K3 Catalytic 63.9 23 0.0005 22.7 4.8 57 2-58 204-263 (267)
145 PF13413 HTH_25: Helix-turn-he 63.5 20 0.00044 18.8 4.4 34 38-71 25-58 (62)
146 cd08223 STKc_Nek4 Catalytic do 63.3 31 0.00067 21.9 5.2 56 2-58 197-252 (257)
147 cd06627 STKc_Cdc7_like Catalyt 62.7 21 0.00046 22.5 4.4 56 2-58 194-249 (254)
148 cd06651 STKc_MEKK3 Catalytic d 62.3 17 0.00037 23.4 4.0 53 2-55 204-256 (266)
149 cd08225 STKc_Nek5 Catalytic do 62.0 27 0.00058 22.1 4.8 55 2-57 197-251 (257)
150 PHA03258 Capsid triplex subuni 61.6 9.6 0.00021 26.7 2.7 36 49-84 54-111 (304)
151 cd06626 STKc_MEKK4 Catalytic d 61.4 34 0.00074 21.8 5.2 56 2-57 201-258 (264)
152 cd05611 STKc_Rim15_like Cataly 59.6 22 0.00048 22.7 4.1 53 2-54 188-242 (260)
153 cd05114 PTKc_Tec_Rlk Catalytic 59.0 45 0.00097 21.3 5.7 58 3-61 198-255 (256)
154 cd05605 STKc_GRK4_like Catalyt 58.7 15 0.00032 24.2 3.2 53 2-54 196-250 (285)
155 cd05076 PTK_Tyk2_rpt1 Pseudoki 58.3 42 0.00091 21.9 5.3 29 33-61 245-273 (274)
156 cd06658 STKc_PAK5 Catalytic do 58.1 32 0.0007 22.7 4.8 58 2-59 213-271 (292)
157 PLN00034 mitogen-activated pro 57.4 35 0.00076 23.3 5.0 57 2-58 268-326 (353)
158 cd06646 STKc_MAP4K5 Catalytic 56.7 8 0.00017 24.9 1.6 58 2-59 204-264 (267)
159 cd05578 STKc_Yank1 Catalytic d 56.5 24 0.00053 22.5 3.9 53 2-55 194-248 (258)
160 COG3092 Uncharacterized protei 55.6 16 0.00035 22.5 2.7 35 35-69 103-142 (149)
161 PF14223 UBN2: gag-polypeptide 55.6 14 0.0003 21.4 2.4 37 27-63 72-108 (119)
162 cd05601 STKc_CRIK Catalytic do 55.2 40 0.00087 22.6 4.9 55 2-57 204-260 (330)
163 cd06611 STKc_SLK_like Catalyti 53.2 42 0.00091 21.7 4.6 56 2-57 203-259 (280)
164 cd06639 STKc_myosinIIIB Cataly 52.9 46 0.001 21.7 4.8 57 2-58 228-285 (291)
165 cd06642 STKc_STK25-YSK1 Cataly 52.8 45 0.00097 21.6 4.7 57 2-59 196-252 (277)
166 cd08220 STKc_Nek8 Catalytic do 51.4 51 0.0011 20.8 4.8 55 2-57 196-250 (256)
167 cd07847 STKc_CDKL1_4 Catalytic 50.7 42 0.0009 21.7 4.3 25 31-55 254-278 (286)
168 cd05038 PTKc_Jak_rpt2 Catalyti 50.7 65 0.0014 20.7 6.1 35 30-64 249-283 (284)
169 PF00034 Cytochrom_C: Cytochro 50.7 14 0.00029 19.5 1.7 16 32-47 76-91 (91)
170 KOG4071|consensus 50.6 69 0.0015 20.9 5.1 43 25-67 82-124 (187)
171 cd06647 STKc_PAK_I Catalytic d 50.3 22 0.00047 23.5 2.9 57 2-58 210-267 (293)
172 cd06620 PKc_MAPKK_Byr1_like Ca 49.9 55 0.0012 21.3 4.8 29 32-60 238-266 (284)
173 cd06652 STKc_MEKK2 Catalytic d 49.5 53 0.0012 21.0 4.7 13 2-14 204-216 (265)
174 cd05631 STKc_GRK4 Catalytic do 48.9 20 0.00042 23.6 2.6 52 2-53 196-249 (285)
175 PRK01229 N-glycosylase/DNA lya 47.9 31 0.00068 22.8 3.3 40 38-78 150-196 (208)
176 cd08219 STKc_Nek3 Catalytic do 47.1 73 0.0016 20.2 5.8 55 2-57 195-249 (255)
177 cd08221 STKc_Nek9 Catalytic do 47.1 70 0.0015 20.3 4.9 54 2-56 196-249 (256)
178 cd07864 STKc_CDK12 Catalytic d 46.9 52 0.0011 21.5 4.4 29 29-57 268-296 (302)
179 PF00069 Pkinase: Protein kina 46.9 21 0.00045 22.7 2.4 57 2-58 194-255 (260)
180 PF05073 Baculo_p24: Baculovir 46.6 30 0.00066 22.4 3.0 30 37-66 68-100 (182)
181 smart00455 RBD Raf-like Ras-bi 46.4 33 0.00071 18.5 2.8 29 56-84 21-59 (70)
182 PHA02119 hypothetical protein 46.3 13 0.00029 20.5 1.2 17 37-53 57-73 (87)
183 cd06655 STKc_PAK2 Catalytic do 44.5 79 0.0017 20.9 5.0 57 2-58 210-267 (296)
184 cd05123 STKc_AGC Catalytic dom 44.5 40 0.00087 21.2 3.5 51 2-54 188-238 (250)
185 cd05608 STKc_GRK1 Catalytic do 44.4 32 0.00069 22.5 3.0 53 2-54 192-246 (280)
186 PF14227 UBN2_2: gag-polypepti 44.0 39 0.00084 19.5 3.1 37 28-64 71-107 (119)
187 PF12590 Acyl-thio_N: Acyl-ATP 43.8 28 0.0006 21.3 2.4 34 48-82 90-123 (129)
188 PF11473 B2: RNA binding prote 43.7 29 0.00064 18.9 2.2 37 28-64 7-48 (73)
189 PHA02956 hypothetical protein; 43.5 24 0.00053 22.1 2.2 30 51-80 33-65 (189)
190 cd08222 STKc_Nek11 Catalytic d 42.1 90 0.0019 19.8 5.1 55 2-57 200-254 (260)
191 cd05609 STKc_MAST Catalytic do 42.0 64 0.0014 21.3 4.2 62 2-63 211-273 (305)
192 PF11567 PfUIS3: Plasmodium fa 41.5 36 0.00078 19.6 2.5 22 51-72 51-72 (101)
193 cd06621 PKc_MAPKK_Pek1_like Ca 41.0 1E+02 0.0022 20.1 5.4 58 2-59 198-265 (287)
194 cd05607 STKc_GRK7 Catalytic do 41.0 46 0.00099 21.7 3.4 53 2-54 189-244 (277)
195 KOG0983|consensus 40.7 1.1E+02 0.0023 22.0 5.1 57 2-58 289-347 (391)
196 cd08218 STKc_Nek1 Catalytic do 39.9 97 0.0021 19.6 4.9 54 2-56 196-249 (256)
197 cd05630 STKc_GRK6 Catalytic do 39.2 40 0.00087 22.1 2.9 53 1-53 195-249 (285)
198 cd05584 STKc_p70S6K Catalytic 39.0 90 0.0019 21.0 4.6 50 1-52 194-243 (323)
199 cd05585 STKc_YPK1_like Catalyt 38.9 44 0.00096 22.3 3.1 59 1-61 187-245 (312)
200 PF10764 Gin: Inhibitor of sig 38.9 18 0.00038 18.1 0.9 13 49-61 33-45 (46)
201 cd05573 STKc_ROCK_NDR_like Cat 38.6 93 0.002 20.9 4.7 51 1-53 224-277 (350)
202 cd05574 STKc_phototropin_like 38.4 65 0.0014 21.3 3.8 55 1-55 226-280 (316)
203 COG4570 Rus Holliday junction 38.3 48 0.001 20.5 2.9 32 48-79 78-110 (132)
204 PHA03390 pk1 serine/threonine- 38.1 58 0.0012 21.2 3.5 56 2-57 201-259 (267)
205 cd06659 STKc_PAK6 Catalytic do 37.8 1.2E+02 0.0026 20.0 5.1 58 2-59 212-270 (297)
206 PF07035 Mic1: Colon cancer-as 37.6 45 0.00097 21.3 2.8 35 35-69 9-43 (167)
207 PTZ00266 NIMA-related protein 37.3 78 0.0017 26.0 4.6 56 2-58 238-293 (1021)
208 PF02214 BTB_2: BTB/POZ domain 36.6 47 0.001 18.3 2.6 34 28-62 45-79 (94)
209 PF14426 Imm2: Immunity protei 36.4 27 0.00059 18.5 1.4 35 13-47 23-58 (60)
210 cd05581 STKc_PDK1 Catalytic do 36.0 96 0.0021 19.8 4.3 51 2-54 217-267 (280)
211 PF08542 Rep_fac_C: Replicatio 35.5 77 0.0017 17.2 4.0 32 33-71 5-36 (89)
212 PF10811 DUF2532: Protein of u 35.1 22 0.00047 21.9 1.0 19 3-21 35-53 (158)
213 KOG0198|consensus 34.5 1.4E+02 0.003 21.0 5.0 57 2-58 217-274 (313)
214 KOG4086|consensus 34.4 18 0.00039 22.0 0.6 20 39-58 47-66 (130)
215 PF08795 DUF1796: Putative pap 34.2 28 0.0006 21.9 1.4 19 63-81 15-34 (167)
216 cd06397 PB1_UP1 Uncharacterize 33.7 35 0.00075 19.3 1.6 25 42-66 10-34 (82)
217 PF05669 Med31: SOH1; InterPr 33.5 10 0.00022 22.3 -0.6 19 35-56 34-52 (101)
218 cd05570 STKc_PKC Catalytic dom 33.3 1E+02 0.0022 20.6 4.2 52 1-54 190-241 (318)
219 cd05633 STKc_GRK3 Catalytic do 32.6 67 0.0015 21.0 3.2 50 2-52 191-242 (279)
220 cd05582 STKc_RSK_N N-terminal 32.4 89 0.0019 20.8 3.8 51 2-54 193-243 (318)
221 cd05572 STKc_cGK_PKG Catalytic 32.2 1.3E+02 0.0028 19.1 4.4 21 33-53 220-240 (262)
222 cd05583 STKc_MSK_N N-terminal 31.9 66 0.0014 20.9 3.0 59 2-61 203-264 (288)
223 PF07021 MetW: Methionine bios 31.9 57 0.0012 21.4 2.6 42 43-84 101-143 (193)
224 cd05591 STKc_nPKC_epsilon Cata 31.7 58 0.0012 21.8 2.8 49 2-52 191-239 (321)
225 cd01559 ADCL_like ADCL_like: 4 31.6 1.5E+02 0.0033 19.4 5.0 38 31-69 23-60 (249)
226 PLN00162 transport protein sec 30.8 55 0.0012 25.7 2.8 23 44-66 668-690 (761)
227 COG2961 ComJ Protein involved 30.5 87 0.0019 21.7 3.4 24 30-53 71-94 (279)
228 cd05620 STKc_nPKC_delta Cataly 29.6 76 0.0017 21.3 3.1 50 2-53 191-240 (316)
229 KOG1324|consensus 29.5 25 0.00054 23.0 0.7 12 2-13 19-30 (190)
230 cd06624 STKc_ASK Catalytic dom 29.2 1.6E+02 0.0034 18.8 4.7 56 2-57 206-262 (268)
231 cd05606 STKc_beta_ARK Catalyti 29.0 1.1E+02 0.0024 19.9 3.8 50 2-52 191-242 (278)
232 PF07295 DUF1451: Protein of u 29.0 72 0.0016 19.9 2.6 46 32-79 45-90 (146)
233 cd06648 STKc_PAK_II Catalytic 28.8 1.7E+02 0.0037 19.1 4.8 55 2-57 210-266 (285)
234 smart00750 KIND kinase non-cat 28.8 1.3E+02 0.0029 17.8 5.3 32 35-66 140-171 (176)
235 PF02196 RBD: Raf-like Ras-bin 28.6 58 0.0013 17.5 2.0 27 57-83 23-59 (71)
236 KOG1498|consensus 28.4 66 0.0014 23.7 2.7 33 45-77 198-230 (439)
237 PF11483 DUF3209: Protein of u 28.3 28 0.00061 21.1 0.7 17 48-64 71-87 (123)
238 KOG0196|consensus 28.3 2.3E+02 0.005 23.2 5.6 62 6-68 834-895 (996)
239 cd05078 PTK_Jak2_Jak3_rpt1 Pse 28.1 1.7E+02 0.0036 18.7 4.7 31 31-61 227-257 (258)
240 cd03565 VHS_Tom1 VHS domain fa 28.1 94 0.002 19.0 3.0 24 47-71 116-139 (141)
241 cd06619 PKc_MKK5 Catalytic dom 28.0 1.5E+02 0.0032 19.2 4.2 29 30-58 223-251 (279)
242 PF10004 DUF2247: Uncharacteri 27.9 1.1E+02 0.0024 19.2 3.4 39 30-68 117-158 (161)
243 COG3877 Uncharacterized protei 27.3 1E+02 0.0022 18.5 2.9 24 52-75 69-92 (122)
244 cd05509 Bromo_gcn5_like Bromod 26.3 65 0.0014 18.2 2.0 17 52-68 1-17 (101)
245 cd05037 PTK_Jak_rpt1 Pseudokin 26.2 1.7E+02 0.0038 18.3 5.0 28 34-61 231-258 (259)
246 PF12030 DUF3517: Domain of un 26.1 2.5E+02 0.0054 20.0 5.2 37 30-69 41-77 (337)
247 TIGR03412 iscX_yfhJ FeS assemb 25.9 87 0.0019 16.8 2.3 20 35-54 25-45 (63)
248 KOG3157|consensus 25.8 2.2E+02 0.0047 19.3 4.6 40 33-72 145-203 (244)
249 PF14473 RD3: RD3 protein 25.7 65 0.0014 19.9 2.0 42 26-67 81-123 (133)
250 PF09111 SLIDE: SLIDE; InterP 25.7 63 0.0014 19.4 1.9 38 35-79 56-93 (118)
251 KOG0194|consensus 25.4 2.9E+02 0.0064 20.7 7.3 67 3-69 359-425 (474)
252 cd05571 STKc_PKB Catalytic dom 25.3 1.9E+02 0.0042 19.3 4.5 50 1-52 189-238 (323)
253 COG4647 AcxC Acetone carboxyla 25.3 27 0.00059 21.7 0.3 9 2-10 14-22 (165)
254 PRK07650 4-amino-4-deoxychoris 25.3 2.2E+02 0.0047 19.1 5.0 39 32-70 43-81 (283)
255 PF04384 Fe-S_assembly: Iron-s 25.0 83 0.0018 16.9 2.1 22 34-55 25-47 (64)
256 KOG0199|consensus 24.9 2.9E+02 0.0063 22.5 5.6 56 2-60 311-368 (1039)
257 PRK10178 D-alanyl-D-alanine di 24.8 86 0.0019 20.4 2.5 27 51-78 137-163 (184)
258 KOG1345|consensus 24.6 79 0.0017 22.5 2.4 10 1-10 219-228 (378)
259 cd05577 STKc_GRK Catalytic dom 24.1 1.7E+02 0.0037 18.9 3.9 50 2-52 189-241 (277)
260 cd05112 PTKc_Itk Catalytic dom 23.8 2E+02 0.0043 18.1 5.7 58 3-61 198-255 (256)
261 PF04611 AalphaY_MDB: Mating t 23.7 64 0.0014 20.0 1.7 15 50-64 45-59 (147)
262 PRK10721 hypothetical protein; 23.7 99 0.0021 16.8 2.2 20 35-54 28-48 (66)
263 cd07835 STKc_CDK1_like Catalyt 23.7 1.8E+02 0.0039 18.7 4.0 13 2-14 195-207 (283)
264 PF03705 CheR_N: CheR methyltr 23.6 89 0.0019 15.4 2.0 39 33-71 2-42 (57)
265 cd07852 STKc_MAPK15 Catalytic 23.6 2.1E+02 0.0045 19.2 4.4 32 27-58 262-293 (337)
266 cd01557 BCAT_beta_family BCAT_ 23.4 2.4E+02 0.0052 19.0 4.8 36 32-68 34-69 (279)
267 PF15007 CEP44: Centrosomal sp 23.4 1.4E+02 0.003 18.4 3.1 17 28-44 27-43 (131)
268 cd05623 STKc_MRCK_alpha Cataly 23.4 80 0.0017 21.3 2.3 45 1-45 202-249 (332)
269 cd05589 STKc_PKN Catalytic dom 23.4 2.4E+02 0.0051 18.9 4.7 50 2-53 196-245 (324)
270 PF04074 DUF386: Domain of unk 23.4 1.4E+02 0.0029 18.3 3.2 26 28-53 11-36 (153)
271 PRK00733 hppA membrane-bound p 23.3 1E+02 0.0022 24.1 3.0 23 46-68 530-552 (666)
272 PF03030 H_PPase: Inorganic H+ 23.3 1.8E+02 0.0039 22.9 4.3 22 46-67 555-576 (682)
273 TIGR00050 rRNA_methyl_1 RNA me 23.1 2.3E+02 0.0051 18.7 4.5 38 34-71 173-214 (233)
274 KOG3272|consensus 23.1 17 0.00036 23.9 -1.0 55 5-61 92-151 (207)
275 PRK13576 3-dehydroquinate dehy 22.7 1E+02 0.0022 20.4 2.6 19 47-65 111-129 (216)
276 PF12415 rpo132: Poxvirus DNA 22.7 76 0.0016 14.8 1.5 16 27-42 6-21 (33)
277 PF04217 DUF412: Protein of un 22.7 2.1E+02 0.0045 17.9 4.1 36 35-70 98-138 (143)
278 PF00621 RhoGEF: RhoGEF domain 22.3 1.6E+02 0.0035 17.5 3.4 30 35-64 142-171 (180)
279 cd06612 STKc_MST1_2 Catalytic 22.2 1.8E+02 0.0039 18.2 3.7 22 33-54 226-247 (256)
280 smart00325 RhoGEF Guanine nucl 21.9 2E+02 0.0043 17.4 3.9 31 36-66 143-173 (180)
281 PRK06680 D-amino acid aminotra 21.7 2.7E+02 0.0058 18.8 5.3 40 31-70 45-84 (286)
282 PRK01816 hypothetical protein; 21.6 1.5E+02 0.0032 18.6 3.0 24 48-71 115-138 (143)
283 TIGR01104 V_PPase vacuolar-typ 21.4 1.8E+02 0.0039 22.9 4.0 23 46-68 555-577 (697)
284 cd05081 PTKc_Jak2_Jak3_rpt2 Ca 21.4 1.6E+02 0.0035 19.0 3.4 35 30-64 249-283 (284)
285 PF02671 PAH: Paired amphipath 21.3 1.1E+02 0.0024 14.6 2.1 16 50-65 17-32 (47)
286 PLN02277 H(+) -translocating i 21.1 1.2E+02 0.0026 24.0 3.0 23 46-68 587-609 (730)
287 PLN02255 H(+) -translocating i 21.0 1.9E+02 0.0041 23.1 4.0 22 47-68 619-640 (765)
288 PF13048 DUF3908: Protein of u 20.8 1.9E+02 0.0041 17.7 3.3 33 36-69 2-34 (127)
289 COG4840 Uncharacterized protei 20.4 1.2E+02 0.0027 16.5 2.2 24 50-73 34-57 (71)
290 PF08958 DUF1871: Domain of un 20.3 1E+02 0.0022 17.1 2.0 34 32-65 36-69 (79)
291 COG4833 Predicted glycosyl hyd 20.2 46 0.001 23.4 0.6 10 1-10 132-141 (377)
292 cd00160 RhoGEF Guanine nucleot 20.1 2.2E+02 0.0047 17.2 3.8 30 36-65 145-174 (181)
293 TIGR00525 folB dihydroneopteri 20.0 1E+02 0.0022 17.9 2.0 19 50-68 48-66 (116)
No 1
>KOG1165|consensus
Probab=99.93 E-value=4.2e-26 Score=156.56 Aligned_cols=82 Identities=33% Similarity=0.495 Sum_probs=77.2
Q ss_pred CcccccCCCCc------cHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q psy9733 1 MEADLTWVREE------QIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDY 74 (86)
Q Consensus 1 ~~G~LPW~~~~------~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~~~~~~ 74 (86)
++|+|||++.+ ++++|++.|+.+++++||.|+|.||+.+++|||+|.|+|+|||++++++|.+++.+.|...|+
T Consensus 230 LRGsLPWQGLKA~tnK~kYeKIGe~Kr~T~i~~Lc~g~P~efa~Yl~yvR~L~F~E~PDYdylr~Lf~dvldr~g~t~Dg 309 (449)
T KOG1165|consen 230 LRGSLPWQGLKADTNKEKYEKIGETKRSTPIEVLCEGFPEEFATYLRYVRRLDFFETPDYDYLRKLFDDVLDRLGETDDG 309 (449)
T ss_pred ccCCCccccccCcchHHHHHHhccccccCCHHHHHhcCHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCcccc
Confidence 47999999974 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCc
Q psy9733 75 LYHNNSSS 82 (86)
Q Consensus 75 ~~DW~~~~ 82 (86)
.|||....
T Consensus 310 ~yDW~~ln 317 (449)
T KOG1165|consen 310 EYDWMGLN 317 (449)
T ss_pred cccccccC
Confidence 99998643
No 2
>KOG1163|consensus
Probab=99.88 E-value=2.6e-23 Score=138.32 Aligned_cols=79 Identities=58% Similarity=0.975 Sum_probs=74.8
Q ss_pred cccccCCCCc------cHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q psy9733 2 EADLTWVREE------QIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYL 75 (86)
Q Consensus 2 ~G~LPW~~~~------~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~~~~~~~ 75 (86)
+|+|||++.+ +.+.|.++|.+++++.||+|.|.||..++.|+++|.|+|.|||.+|+++|+-++...+...|..
T Consensus 216 rG~LPWQglka~tk~QKyEkI~EkK~s~~ie~LC~G~P~EF~myl~Y~R~L~F~E~Pdy~ylrqlFriLfr~ln~~~d~i 295 (341)
T KOG1163|consen 216 RGSLPWQGLKAATKKQKYEKISEKKMSTPIEVLCKGFPAEFAMYLNYCRGLGFEEKPDYMYLRQLFRILFRTLNHQYDYI 295 (341)
T ss_pred cCCCcccccchhhHHHHHHHHHHhhcCCCHHHHhCCCcHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHhhccccCCeE
Confidence 6999999973 4678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q psy9733 76 YHNNS 80 (86)
Q Consensus 76 ~DW~~ 80 (86)
|||..
T Consensus 296 yDW~~ 300 (341)
T KOG1163|consen 296 YDWTM 300 (341)
T ss_pred eeHHH
Confidence 99973
No 3
>KOG1164|consensus
Probab=99.48 E-value=2.2e-13 Score=93.09 Aligned_cols=81 Identities=22% Similarity=0.330 Sum_probs=66.7
Q ss_pred cccccCCCCccHHHHHHHhHc---CCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcccc
Q psy9733 2 EADLTWVREEQIVARGRLVMV---APSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLYHN 78 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~---~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~~~~~~~~DW 78 (86)
.|.|||++.+....+.+.|+. .....++..+|.+|..++.++++++|.++|||.+++.+|..++.+.+.+.+.+|||
T Consensus 232 ~g~LPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~~~~~~~~~~~~~dw 311 (322)
T KOG1164|consen 232 KGSLPWEALEMTDLKSKFEKDPRKLLTDRFGDLKPEEFAKILEYIDSLDYEDKPDYEKLAELLKDVFDSEGSKEDSPFDW 311 (322)
T ss_pred cCCCCCccccccchHHHHHHHhhhhccccccCCChHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCcc
Confidence 578999998754444444432 22223677889999999999999999999999999999999999999999999999
Q ss_pred CCCc
Q psy9733 79 NSSS 82 (86)
Q Consensus 79 ~~~~ 82 (86)
+...
T Consensus 312 ~~~~ 315 (322)
T KOG1164|consen 312 EVKL 315 (322)
T ss_pred cccc
Confidence 9754
No 4
>PHA02882 putative serine/threonine kinase; Provisional
Probab=98.32 E-value=1.2e-06 Score=58.73 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=45.7
Q ss_pred CcccccCCCCc-cHHHHHHHhHc-----CCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 1 MEADLTWVREE-QIVARGRLVMV-----APSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 1 ~~G~LPW~~~~-~~~~i~~~K~~-----~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
++|.+||.... ..+.+...|.. ......+.++|.++.++++++.+++++++|||+.|+++|.
T Consensus 227 ~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~~ 294 (294)
T PHA02882 227 AGIKLPWKGFGHNGNLIHAAKCDFIKRLHEGKIKIKNANKFIYDFIECVTKLSYEEKPDYDALIKIFD 294 (294)
T ss_pred HhCCCCCCccccchHHHHHhHHHHHHHhhhhhhccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhhC
Confidence 36999999874 33333333321 1223345778999999999999999999999999999873
No 5
>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr
Probab=96.85 E-value=0.0039 Score=40.56 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=47.7
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRI 63 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~ 63 (86)
|.+||......+.+..++..... .....+|.++.+++..+-..+..++|.++.+.++|++
T Consensus 200 g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 259 (260)
T cd05067 200 GRIPYPGMTNPEVIQNLERGYRM-PRPDNCPEELYELMRLCWKEKPEERPTFEYLRSVLED 259 (260)
T ss_pred CCCCCCCCChHHHHHHHHcCCCC-CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence 89999987766665555554332 3446678999999999999999999999999999864
No 6
>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein. Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi
Probab=96.28 E-value=0.023 Score=37.59 Aligned_cols=64 Identities=6% Similarity=-0.031 Sum_probs=47.7
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
|.+||............+..... ..-..++.++.+++..+-+....++|+++.+.+.|++++.+
T Consensus 226 g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~~~ 289 (290)
T cd05045 226 GGNPYPGIAPERLFNLLKTGYRM-ERPENCSEEMYNLMLTCWKQEPDKRPTFADISKELEKMMVK 289 (290)
T ss_pred CCCCCCCCCHHHHHHHHhCCCCC-CCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHHHhc
Confidence 88999876543333333333222 22356788999999999999999999999999999999875
No 7
>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa
Probab=96.24 E-value=0.015 Score=37.77 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=46.4
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRI 63 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~ 63 (86)
|.+||............+..... .....+|.++.+++..+-+-...++|+++.+.++|++
T Consensus 201 g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 260 (261)
T cd05072 201 GKIPYPGMSNSDVMSALQRGYRM-PRMENCPDELYDIMKTCWKEKAEERPTFDYLQSVLDD 260 (261)
T ss_pred CCCCCCCCCHHHHHHHHHcCCCC-CCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 89999887655554444443332 2335788999999999999999999999999999875
No 8
>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor
Probab=96.18 E-value=0.022 Score=37.32 Aligned_cols=62 Identities=6% Similarity=-0.025 Sum_probs=47.7
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
.|.+||......+.+...+..... .....+|..+.+++..+-+....++|.++.|.+.|.++
T Consensus 204 ~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~ 265 (266)
T cd05064 204 YGERPYWDMSGQDVIKAVEDGFRL-PAPRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM 265 (266)
T ss_pred CCCCCcCcCCHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence 489999887655554444433222 23467899999999999999999999999999998765
No 9
>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio
Probab=95.91 E-value=0.035 Score=36.05 Aligned_cols=61 Identities=10% Similarity=0.101 Sum_probs=45.5
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
|..||........+...+... ...+-.++|.++.+++..+-+..+.++|.++.+...|.+.
T Consensus 195 g~~p~~~~~~~~~~~~i~~~~-~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~~ 255 (257)
T cd05116 195 GQKPYKGMKGNEVTQMIESGE-RMECPQRCPPEMYDLMKLCWTYGVDERPGFAVVELRLRNY 255 (257)
T ss_pred CCCCCCCCCHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHhccCchhCcCHHHHHHHHhcc
Confidence 889998875544333333222 2234457889999999999999999999999999888653
No 10
>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored
Probab=95.90 E-value=0.033 Score=36.23 Aligned_cols=62 Identities=8% Similarity=0.019 Sum_probs=46.8
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILF 65 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~ 65 (86)
|..||......+.+...+..... .....+|.++.+++..+-+....++|.++.+.+.|.+++
T Consensus 207 g~~p~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~~ 268 (268)
T cd05063 207 GERPYWDMSNHEVMKAINDGFRL-PAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKLL 268 (268)
T ss_pred CCCCCCcCCHHHHHHHHhcCCCC-CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhhC
Confidence 89999877655544444433222 223467899999999999999999999999999998763
No 11
>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions
Probab=95.71 E-value=0.063 Score=35.03 Aligned_cols=65 Identities=11% Similarity=0.119 Sum_probs=50.5
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
.|..||......+.....+..... ....++|.++.+++.-+-+....++|+...+...|.++...
T Consensus 204 ~g~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~~ 268 (270)
T cd05056 204 LGVKPFQGVKNNDVIGRIENGERL-PMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDILQE 268 (270)
T ss_pred cCCCCCCCCCHHHHHHHHHcCCcC-CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 488999888765555554443322 34567899999999999999999999999999999887653
No 12
>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa. Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho
Probab=95.59 E-value=0.051 Score=35.42 Aligned_cols=63 Identities=10% Similarity=0.173 Sum_probs=46.3
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILF 65 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~ 65 (86)
.|..||......+.+....... ...+-..+|.++.+++..+-+.++.++|+++.+.+.|+..+
T Consensus 194 ~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~~ 256 (257)
T cd05115 194 YGQKPYKKMKGPEVMSFIEQGK-RLDCPAECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTYY 256 (257)
T ss_pred CCCCCcCcCCHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhhc
Confidence 3889998876554433222221 12333567899999999999999999999999999988753
No 13
>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V
Probab=95.58 E-value=0.064 Score=36.36 Aligned_cols=65 Identities=12% Similarity=0.020 Sum_probs=47.7
Q ss_pred cccccCCCCccHHHH-HHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 2 EADLTWVREEQIVAR-GRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i-~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
.|..||........+ ...+.... ......+|.++..++..+-+....++|++..+.+.|.+++.+
T Consensus 272 ~g~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~dp~~RPs~~el~~~l~~~~~~ 337 (338)
T cd05102 272 LGASPYPGVQINEEFCQRLKDGTR-MRAPENATPEIYRIMLACWQGDPKERPTFSALVEILGDLLQE 337 (338)
T ss_pred CCCCCCCCCCccHHHHHHHhcCCC-CCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 388999886533333 22332222 223456788999999999999999999999999999998864
No 14
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=95.53 E-value=0.06 Score=37.48 Aligned_cols=63 Identities=13% Similarity=0.053 Sum_probs=45.0
Q ss_pred cccccCCCCccHHHHHHH-hHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRL-VMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILF 65 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~-K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~ 65 (86)
.|..||........+... +..... ..-...|.++.+++..+-.....++|++..+.++|.+++
T Consensus 310 ~G~~Pf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~~ 373 (374)
T cd05106 310 LGKSPYPGILVNSKFYKMVKRGYQM-SRPDFAPPEIYSIMKMCWNLEPTERPTFSQISQLIQRQL 373 (374)
T ss_pred CCCCCCccccccHHHHHHHHcccCc-cCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHh
Confidence 389999886543333222 222111 112345789999999999999999999999999999876
No 15
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=95.43 E-value=0.031 Score=36.69 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=43.3
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYL 57 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l 57 (86)
+|..||........+...+...........+|.++.+++..+-+....++|++..+
T Consensus 221 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~el 276 (282)
T cd06636 221 EGAPPLCDMHPMRALFLIPRNPPPKLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQL 276 (282)
T ss_pred hCCCCccccCHHhhhhhHhhCCCCCCcccccCHHHHHHHHHHhCCChhhCcCHHHH
Confidence 58899987765555555554444445556789999999999999999999998765
No 16
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=95.29 E-value=0.094 Score=34.05 Aligned_cols=60 Identities=8% Similarity=0.118 Sum_probs=45.4
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRI 63 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~ 63 (86)
|.+||....+.+....++.... .....+.|..+.+++..+-.....++|.++.+.+.|++
T Consensus 200 g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 259 (260)
T cd05069 200 GRVPYPGMVNREVLEQVERGYR-MPCPQGCPESLHELMKLCWKKDPDERPTFEYIQSFLED 259 (260)
T ss_pred CCCCCCCCCHHHHHHHHHcCCC-CCCCcccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 8999998766554444443322 22345788999999999999999999999999988764
No 17
>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=95.27 E-value=0.077 Score=34.46 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=46.1
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRI 63 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~ 63 (86)
|.+||............+..... ......|.++.+++..+-.....++|+++.+.+.|..
T Consensus 200 g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~ 259 (260)
T cd05073 200 GRIPYPGMSNPEVIRALERGYRM-PRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD 259 (260)
T ss_pred CCCCCCCCCHHHHHHHHhCCCCC-CCcccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 88999887665555444444332 3346778899999999999999999999999998864
No 18
>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto
Probab=94.85 E-value=0.15 Score=34.98 Aligned_cols=64 Identities=13% Similarity=0.028 Sum_probs=45.0
Q ss_pred ccccCCCCccHHHHH-HHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARG-RLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 3 G~LPW~~~~~~~~i~-~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
|.+||......+... .++.... ...-...+.++.+++..+-....+++|++..+.+.|.++++.
T Consensus 272 g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~~~~ 336 (337)
T cd05054 272 GASPYPGVQIDEEFCRRLKEGTR-MRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEILGDLLQE 336 (337)
T ss_pred CCCCCCCCCccHHHHHHHhccCC-CCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 889998754322222 2222222 122245667899999999999999999999999999998864
No 19
>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor
Probab=94.81 E-value=0.14 Score=33.22 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=45.2
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
|.+||......+.....+.. .......++|..+.+++..+-....+++|.++.+.+.|.++
T Consensus 211 g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~ 271 (272)
T cd05075 211 GQTPYPGVENSEIYDYLRQG-NRLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA 271 (272)
T ss_pred CCCCCCCCCHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 78999886554433333322 22233456788999999999999999999999999998875
No 20
>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=94.73 E-value=0.17 Score=33.31 Aligned_cols=59 Identities=8% Similarity=0.027 Sum_probs=44.7
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
|.+||..... ..+.++............+|.++..++..+-.....++|+++.+.+.|+
T Consensus 223 g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~ 281 (283)
T cd05090 223 GLQPYYGFSN-QEVIEMVRKRQLLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLR 281 (283)
T ss_pred CCCCCCCCCH-HHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhh
Confidence 8889977643 3444444433333456778999999999999999999999999988875
No 21
>PHA02988 hypothetical protein; Provisional
Probab=94.69 E-value=0.2 Score=33.36 Aligned_cols=63 Identities=8% Similarity=0.044 Sum_probs=44.6
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
+|..||.+....+.....-.......+-..+|.++.+++..+-+....++|+.+.+.+.|...
T Consensus 217 ~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~ 279 (283)
T PHA02988 217 TGKIPFENLTTKEIYDLIINKNNSLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLY 279 (283)
T ss_pred HCCCCCCCCCHHHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHH
Confidence 689999987543332222111111223346899999999999999999999999999888764
No 22
>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase). Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It
Probab=94.67 E-value=0.19 Score=32.93 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=46.9
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
|.+||......+.....+...... .-..+|.++.+++..+-+....++|.+..+...|.++..+
T Consensus 216 g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~~ 279 (280)
T cd05043 216 GQTPYVEIDPFEMAAYLKDGYRLA-QPINCPDELFAVMACCWALDPEERPSFSQLVQCLTDFHAQ 279 (280)
T ss_pred CCCCcCcCCHHHHHHHHHcCCCCC-CCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhc
Confidence 889998765444333333332222 2245788999999999999999999999999999988653
No 23
>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul
Probab=94.39 E-value=0.17 Score=32.95 Aligned_cols=62 Identities=10% Similarity=0.017 Sum_probs=46.5
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
.|..||......+.+...+..... ....++|..+.+++..+-+....++|.+..+.+.|.++
T Consensus 205 ~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 266 (267)
T cd05066 205 YGERPYWEMSNQDVIKAIEEGYRL-PAPMDCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL 266 (267)
T ss_pred CCCCCcccCCHHHHHHHHhCCCcC-CCCCCCCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence 389999887655444444433222 22356788999999999999999999999999998765
No 24
>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=94.38 E-value=0.15 Score=32.90 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=44.0
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
.|.+||......+.....+.... .....++|.++..++..+-+..+.++|+++.+...|+
T Consensus 193 ~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~ 252 (254)
T cd05083 193 YGRAPYPKMSLKEVKECVEKGYR-MEPPEGCPADVYVLMTSCWETEPKKRPSFHKLREKLE 252 (254)
T ss_pred CCCCCCccCCHHHHHHHHhCCCC-CCCCCcCCHHHHHHHHHHcCCChhhCcCHHHHHHHHc
Confidence 38899988754433333333322 2345678899999999999999999999999998875
No 25
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=94.23 E-value=0.27 Score=32.02 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=45.7
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILF 65 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~ 65 (86)
|.+||........+...... ........+|..+.+++..+-+-...++|+++.+...|...+
T Consensus 200 g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~~ 261 (262)
T cd05071 200 GRVPYPGMVNREVLDQVERG-YRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF 261 (262)
T ss_pred CCCCCCCCChHHHHHHHhcC-CCCCCccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHHhc
Confidence 88899877554433332222 122334678899999999999999999999999999988764
No 26
>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment
Probab=94.21 E-value=0.22 Score=32.41 Aligned_cols=61 Identities=7% Similarity=-0.027 Sum_probs=45.2
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
|..||......+........... ..-..+|..+.+++..+-+....++|.+..+.+.|.++
T Consensus 205 g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~ 265 (266)
T cd05033 205 GERPYWDMSNQDVIKAVEDGYRL-PPPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM 265 (266)
T ss_pred CCCCCCCCCHHHHHHHHHcCCCC-CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 88999877655444333322221 22346789999999999999999999999999998775
No 27
>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.
Probab=94.06 E-value=0.35 Score=32.14 Aligned_cols=67 Identities=9% Similarity=0.004 Sum_probs=50.0
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCC
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNH 70 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~~ 70 (86)
|.+||......+........... ..-..+|.++.+++..+-.-...++|+++.+.+.|..++.....
T Consensus 215 g~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~~~ 281 (297)
T cd05089 215 GGTPYCGMTCAELYEKLPQGYRM-EKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEARKA 281 (297)
T ss_pred CCCCCCCCCHHHHHHHHhcCCCC-CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhcc
Confidence 88999887654444443333221 22345788999999999999999999999999999999876543
No 28
>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros. Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male
Probab=93.87 E-value=0.3 Score=31.69 Aligned_cols=59 Identities=7% Similarity=0.140 Sum_probs=42.7
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
|.+||......+.....+.... -..-..+|..+.+++..+-.....++|+++.+.+.|.
T Consensus 210 g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~ 268 (269)
T cd05044 210 GQQPYPALNNQEVLQHVTAGGR-LQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQ 268 (269)
T ss_pred CCCCCcccCHHHHHHHHhcCCc-cCCcccchHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence 8899987655443333322221 1233567899999999999999999999999988874
No 29
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=93.87 E-value=0.42 Score=31.90 Aligned_cols=66 Identities=9% Similarity=-0.021 Sum_probs=49.1
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcC
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLN 69 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~ 69 (86)
|..||......+.....+.... ......++.++.+++..+-.....++|++..+...|..++...+
T Consensus 239 g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~~~ 304 (307)
T cd05098 239 GGSPYPGVPVEELFKLLKEGHR-MDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILALTS 304 (307)
T ss_pred CCCCCCcCCHHHHHHHHHcCCC-CCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHHHhh
Confidence 7889977544333333333332 23445678899999999999999999999999999999987654
No 30
>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu
Probab=93.78 E-value=0.28 Score=31.74 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=46.3
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
|..||....+.+.....+. .........++.++.+++..+-.....++|.+..+.+.|.++
T Consensus 212 g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~ 272 (273)
T cd05035 212 GQTPYPGVENHEIYDYLRH-GNRLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI 272 (273)
T ss_pred CCCCCCCCCHHHHHHHHHc-CCCCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 8899988765544433332 223334567788999999999999999999999999998775
No 31
>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr
Probab=93.64 E-value=0.28 Score=31.89 Aligned_cols=62 Identities=5% Similarity=-0.038 Sum_probs=43.9
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
.|..||......+........... .....+|..+..++..+-.....++|+++.+.+.|.++
T Consensus 207 ~g~~p~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 268 (269)
T cd05065 207 YGERPYWDMSNQDVINAIEQDYRL-PPPMDCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM 268 (269)
T ss_pred CCCCCCCCCCHHHHHHHHHcCCcC-CCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 388999776544333322222111 12356788999999999999999999999999988765
No 32
>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea
Probab=93.61 E-value=0.54 Score=30.78 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=44.2
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
|..||...... .+.+..........-..++..+..++..+-.....++|.+..+.+.|.++++.
T Consensus 208 g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~~ 271 (279)
T cd05057 208 GAKPYEGIPAV-EIPDLLEKGERLPQPPICTIDVYMVLVKCWMIDAESRPTFKELINEFSKMARD 271 (279)
T ss_pred CCCCCCCCCHH-HHHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhC
Confidence 88999886432 22222222111122234567888899999899999999999999999999764
No 33
>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re
Probab=93.53 E-value=0.26 Score=31.81 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=44.6
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRI 63 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~ 63 (86)
.|.+||......+.+...+.... ..+-..+|..+.+++..+-+....++|.++.+.+.|++
T Consensus 195 ~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~ 255 (256)
T cd05082 195 FGRVPYPRIPLKDVVPRVEKGYK-MDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLREQLEH 255 (256)
T ss_pred CCCCCCCCCCHHHHHHHHhcCCC-CCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHhc
Confidence 38899987654333333333222 23446789999999999999999999999999988764
No 34
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=93.47 E-value=0.24 Score=35.11 Aligned_cols=64 Identities=9% Similarity=0.016 Sum_probs=46.3
Q ss_pred cccccCCCCccHHHH-HHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHH
Q psy9733 2 EADLTWVREEQIVAR-GRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFR 66 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i-~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~ 66 (86)
.|..||........+ ...+..... .....+|.++.+++..+-+....++|++..+.++|.++++
T Consensus 335 ~g~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~~ 399 (400)
T cd05105 335 LGGTPYPGMIVDSTFYNKIKSGYRM-AKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLLP 399 (400)
T ss_pred CCCCCCcccchhHHHHHHHhcCCCC-CCCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHcC
Confidence 388999876433222 223332222 2335678999999999999999999999999999998764
No 35
>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=93.26 E-value=0.41 Score=30.99 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=44.9
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRI 63 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~ 63 (86)
|.+||...........++..... ..-..+|..+.+++..+-+....++|+++.+.+.|.+
T Consensus 201 g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~ 260 (261)
T cd05068 201 GRMPYPGMTNAEVLQQVDQGYRM-PCPPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLED 260 (261)
T ss_pred CCCCCCCCCHHHHHHHHHcCCCC-CCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence 89999887655444444443322 1224578899999999999999999999999998864
No 36
>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.
Probab=93.18 E-value=0.42 Score=30.92 Aligned_cols=63 Identities=11% Similarity=0.182 Sum_probs=43.1
Q ss_pred cccccCCCCcc-HHHHHHHhHcCCccC-cCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 2 EADLTWVREEQ-IVARGRLVMVAPSYW-HNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 2 ~G~LPW~~~~~-~~~i~~~K~~~~~~~-l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
+|.+||..... ...+.+......... .-...+.++..++..+-.....++|+++.+...++++
T Consensus 201 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~ 265 (267)
T cd08229 201 ALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRM 265 (267)
T ss_pred hCCCCcccccchHHHHhhhhhcCCCCCCCcccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence 58899976532 222222222222222 2245778999999999999999999999999998875
No 37
>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi
Probab=93.05 E-value=0.46 Score=30.70 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=45.1
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
|.+||......+.+...... .....-..+|.++.+++.-+-+....++|++..+.+.|++.
T Consensus 195 g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~ 255 (257)
T cd05060 195 GAKPYGEMKGAEVIAMLESG-ERLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRD 255 (257)
T ss_pred CCCCcccCCHHHHHHHHHcC-CcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhc
Confidence 89999887654443333322 22223356788999999999999999999999999998764
No 38
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=92.91 E-value=0.54 Score=33.35 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=44.3
Q ss_pred ccccCCCCccHHHHHH-HhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGR-LVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILF 65 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~-~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~ 65 (86)
|..||......+.... .+..... ..-..++.++.+++..+-...+.++|+++.|...|++++
T Consensus 338 g~~P~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~~ 400 (401)
T cd05107 338 GGTPYPELPMNEQFYNAIKRGYRM-AKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDLL 400 (401)
T ss_pred CCCCCCCCCchHHHHHHHHcCCCC-CCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence 7889987654443222 2222221 122356789999999999999999999999999998875
No 39
>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=92.88 E-value=0.51 Score=30.93 Aligned_cols=60 Identities=8% Similarity=-0.032 Sum_probs=45.1
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRI 63 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~ 63 (86)
|..||......+ +.+............++|.++..++..+-.....++|.++.+.+.|+.
T Consensus 223 g~~p~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~ 282 (283)
T cd05091 223 GLQPYCGYSNQD-VIEMIRNRQVLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT 282 (283)
T ss_pred CCCCCCCCCHHH-HHHHHHcCCcCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence 778998765443 333333333344567899999999999999999999999999888753
No 40
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=92.82 E-value=0.63 Score=31.11 Aligned_cols=66 Identities=8% Similarity=-0.011 Sum_probs=48.9
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcC
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLN 69 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~ 69 (86)
|.+||......+.....+...... .-..+|.++.+++..+-+....++|+.+.+...+.+++....
T Consensus 220 g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~~~ 285 (303)
T cd05088 220 GGTPYCGMTCAELYEKLPQGYRLE-KPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK 285 (303)
T ss_pred CCCCcccCChHHHHHHHhcCCcCC-CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhh
Confidence 899998765544444444432222 224567899999999999999999999999999988877654
No 41
>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp
Probab=92.70 E-value=0.61 Score=31.85 Aligned_cols=65 Identities=11% Similarity=-0.032 Sum_probs=45.0
Q ss_pred cccccCCCCccHHH-HHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 2 EADLTWVREEQIVA-RGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 2 ~G~LPW~~~~~~~~-i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
.|.+||........ ....+..... ..-..++.++..++..+-.-...++|+.+.+.+.|..+++.
T Consensus 277 ~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~~ 342 (343)
T cd05103 277 LGASPYPGVKIDEEFCRRLKEGTRM-RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 342 (343)
T ss_pred CCCCCCCCccccHHHHHHHhccCCC-CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 38899987643322 2223332221 11233566889999888888999999999999999999864
No 42
>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase. Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and
Probab=92.68 E-value=0.69 Score=29.74 Aligned_cols=60 Identities=10% Similarity=0.175 Sum_probs=42.3
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
|.+||......+.+...-...........+|..+.+++.-+-+....++|.++.+...|.
T Consensus 197 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~ 256 (257)
T cd05040 197 GEEPWAGLSGSQILKKIDKEGERLERPEACPQDIYNVMLQCWAHNPADRPTFAALREFLP 256 (257)
T ss_pred CCCCCCCCCHHHHHHHHHhcCCcCCCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence 899998765444333222122222233567899999999999999999999999988764
No 43
>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l
Probab=92.66 E-value=0.56 Score=30.63 Aligned_cols=63 Identities=8% Similarity=-0.021 Sum_probs=46.4
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILF 65 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~ 65 (86)
.|.+||......+.....+.....+ .-..++.++.+++..+-.....++|..+.+...|..++
T Consensus 207 ~g~~pf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~~ 269 (270)
T cd05047 207 LGGTPYCGMTCAELYEKLPQGYRLE-KPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML 269 (270)
T ss_pred CCCCCccccCHHHHHHHHhCCCCCC-CCCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHhh
Confidence 3899998765544444444433222 23456789999999999999999999999999988775
No 44
>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta
Probab=92.49 E-value=0.76 Score=30.32 Aligned_cols=63 Identities=11% Similarity=0.140 Sum_probs=45.7
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFR 66 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~ 66 (86)
|..||......+ +...........+...+|.++.+++..+-+....++|++..+.+.|++.+.
T Consensus 218 ~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~~ 280 (288)
T cd05061 218 AEQPYQGLSNEQ-VLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLH 280 (288)
T ss_pred CCCCCCCCCHHH-HHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhcC
Confidence 788998765433 333222222233456778999999999999999999999999988887763
No 45
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=92.49 E-value=0.69 Score=30.94 Aligned_cols=61 Identities=13% Similarity=-0.001 Sum_probs=43.5
Q ss_pred ccccCCCCccHHHHHHH-hHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRL-VMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~-K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
|..||..........+. +.... .......|.++.+++..+-+...+++|+++.+.+.|.++
T Consensus 240 g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~ 301 (302)
T cd05055 240 GSNPYPGMPVDSKFYKLIKEGYR-MAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ 301 (302)
T ss_pred CCCCcCCCCchHHHHHHHHcCCc-CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence 78898876544333222 22211 122345678999999999999999999999999998875
No 46
>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom
Probab=92.49 E-value=0.55 Score=30.28 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=45.5
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRI 63 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~ 63 (86)
|.+||......+.+...+.... ......+|.++.+++..+-+....++|..+.|.+.|..
T Consensus 201 g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~ 260 (261)
T cd05148 201 GQVPYPGMNNHEVYDQITAGYR-MPCPAKCPQEIYKIMLECWAAEPEDRPSFKALREELDN 260 (261)
T ss_pred CCCCCCcCCHHHHHHHHHhCCc-CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhc
Confidence 8899988765555554443322 22335778899999999999999999999999998865
No 47
>KOG0192|consensus
Probab=92.34 E-value=0.95 Score=32.08 Aligned_cols=68 Identities=6% Similarity=0.148 Sum_probs=52.8
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcC
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLN 69 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~ 69 (86)
+|..||.+......+..+-.......+-..+|+.+..+++-+=.-....+|++..|...|+.+.....
T Consensus 241 t~~~Pf~~~~~~~~~~~v~~~~~Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~~~ 308 (362)
T KOG0192|consen 241 TGEIPFEDLAPVQVASAVVVGGLRPPIPKECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMSHIS 308 (362)
T ss_pred HCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHhhc
Confidence 68899999987444444333333344445599999999999999999999999999999999887543
No 48
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=92.30 E-value=0.68 Score=29.83 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=43.7
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRI 63 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~ 63 (86)
|.+|+........+........ ...-.++|.++.+++..+-+.....+|+++.+.+.|..
T Consensus 201 g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~ 260 (261)
T cd05034 201 GRVPYPGMTNREVLEQVERGYR-MPRPPNCPEELYDLMLQCWDKDPEERPTFEYLQSFLED 260 (261)
T ss_pred CCCCCCCCCHHHHHHHHHcCCC-CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence 8899987765544444443322 12224568899999999999999999999999988764
No 49
>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer
Probab=92.28 E-value=0.49 Score=30.95 Aligned_cols=60 Identities=8% Similarity=-0.037 Sum_probs=45.4
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRI 63 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~ 63 (86)
|..||.+....+.+...+... .......+|.++..++..+-+....++|..+.+.+.|++
T Consensus 223 g~~p~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~ 282 (283)
T cd05048 223 GLQPYYGFSNQEVIEMIRSRQ-LLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRS 282 (283)
T ss_pred CCCCCCCCCHHHHHHHHHcCC-cCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhc
Confidence 788998765544444444332 223456789999999999999999999999999988864
No 50
>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly
Probab=92.08 E-value=1 Score=29.76 Aligned_cols=65 Identities=9% Similarity=0.027 Sum_probs=49.4
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHc
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTL 68 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~ 68 (86)
|..||......+.+...+... ...+...+|.++.+++.-+-+....++|....+.+.|.++....
T Consensus 219 g~~p~~~~~~~~~~~~i~~~~-~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~~ 283 (288)
T cd05093 219 GKQPWYQLSNNEVIECITQGR-VLQRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKAS 283 (288)
T ss_pred CCCCCCCCCHHHHHHHHHcCC-cCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHhc
Confidence 889998876554444443322 22344567889999999999999999999999999999988654
No 51
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=92.00 E-value=0.6 Score=30.07 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=43.0
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRI 63 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~ 63 (86)
|.+||......+.....+..... ..-..+|.++.+++..+-.....++|+...+...|.+
T Consensus 196 g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 255 (256)
T cd05039 196 GRVPYPRIPLKDVVPHVEKGYRM-EAPEGCPPEVYKVMKDCWELDPAKRPTFKQLREQLAL 255 (256)
T ss_pred CCCCCCCCCHHHHHHHHhcCCCC-CCccCCCHHHHHHHHHHhccChhhCcCHHHHHHHHhc
Confidence 88999887544433333332222 2335678899999999999999999999998888754
No 52
>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s
Probab=92.00 E-value=0.6 Score=30.39 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=43.7
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
|.+||....+...+...+........-..+|..+..++..+-+....++|+.+.+...|.
T Consensus 215 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~ 274 (275)
T cd05046 215 GELPFYGLSDEEVLNRLQAGKLELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSALG 274 (275)
T ss_pred CCCCccccchHHHHHHHHcCCcCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence 788998766555555444322222233568899999999999999999999999887764
No 53
>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows
Probab=91.83 E-value=0.77 Score=29.66 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=43.2
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLF 61 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l 61 (86)
|.+||......+.+...+...... .-..+|.++.+++..+-.....++|.+..+.+.|
T Consensus 198 g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l 255 (256)
T cd05059 198 GKMPYERFSNSEVVESVSAGYRLY-RPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL 255 (256)
T ss_pred CCCCCCCCCHHHHHHHHHcCCcCC-CCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence 899998876655555555443322 2245789999999999999999999998887664
No 54
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=91.17 E-value=0.65 Score=30.89 Aligned_cols=61 Identities=8% Similarity=0.113 Sum_probs=43.1
Q ss_pred cccccCCCCccHHHHHHHhHcCCc------cCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPS------YWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~------~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
.|..||......+.+...+..... ......+|..+.+++..+-+....++|.++.+...|+
T Consensus 237 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~ 303 (304)
T cd05096 237 CKEQPYGELTDEQVIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFLT 303 (304)
T ss_pred cCCCCCCcCCHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHh
Confidence 367899887655444443332111 1112467899999999999999999999999988775
No 55
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=91.12 E-value=1.6 Score=29.50 Aligned_cols=66 Identities=9% Similarity=-0.027 Sum_probs=49.0
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcC
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLN 69 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~ 69 (86)
|.+||......+.....+.... ......+|.++..++..+-.....++|+++.+...|..++....
T Consensus 233 g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~~~~ 298 (334)
T cd05100 233 GGSPYPGIPVEELFKLLKEGHR-MDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTVTS 298 (334)
T ss_pred CCCCCCCCCHHHHHHHHHcCCC-CCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHhhhcC
Confidence 7889987654443333333222 23345678899999999999999999999999999999986554
No 56
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=91.11 E-value=0.9 Score=31.61 Aligned_cols=61 Identities=10% Similarity=0.012 Sum_probs=43.4
Q ss_pred ccccCCCCccHHHHHH-HhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGR-LVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~-~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
|..||........+.+ .+.... .......|.++.+++..+-.....++|....+.+.|++.
T Consensus 313 g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~~ 374 (375)
T cd05104 313 GSSPYPGMPVDSKFYKMIKEGYR-MLSPECAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQQ 374 (375)
T ss_pred CCCCCCCCCchHHHHHHHHhCcc-CCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHhh
Confidence 7889987654333332 232222 122345688999999999999999999999999988764
No 57
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=91.03 E-value=1.2 Score=28.72 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=44.1
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRI 63 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~ 63 (86)
|.+||......+....+...... ..-.+.|.++.+++.-+-.....++|.++.+.+.|++
T Consensus 200 g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~ 259 (260)
T cd05070 200 GRVPYPGMNNREVLEQVERGYRM-PCPQDCPISLHELMLQCWKKDPEERPTFEYLQSFLED 259 (260)
T ss_pred CCCCCCCCCHHHHHHHHHcCCCC-CCCCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 88999887654444444332221 2335678899999999999999999999999988764
No 58
>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c
Probab=91.03 E-value=1.1 Score=28.61 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=43.4
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
|.+||............+..... .....+|..+..++..+-+....++|....+.+.|.
T Consensus 191 g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~ 249 (250)
T cd05085 191 GVCPYPGMTNQQAREQVEKGYRM-SCPQKCPDDVYKVMQRCWDYKPENRPKFSELQKELA 249 (250)
T ss_pred CCCCCCCCCHHHHHHHHHcCCCC-CCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence 88999887554444444433222 234567899999999999999999999999887763
No 59
>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n
Probab=90.92 E-value=1.6 Score=28.77 Aligned_cols=64 Identities=8% Similarity=0.034 Sum_probs=49.5
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
|..||......+.+...+.. ........+|..+.+++..+-.....++|....+.+.|.++...
T Consensus 222 g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~~ 285 (291)
T cd05094 222 GKQPWFQLSNTEVIECITQG-RVLERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGKA 285 (291)
T ss_pred CCCCCCCCCHHHHHHHHhCC-CCCCCCccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHhh
Confidence 89999887655555444332 22334456789999999999999999999999999999999764
No 60
>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
Probab=90.86 E-value=0.82 Score=29.56 Aligned_cols=56 Identities=13% Similarity=-0.005 Sum_probs=41.3
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|..||........+...... ....+...+|.++..++..+-+.....+|+++.+.
T Consensus 207 ~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il 262 (267)
T cd06628 207 TGKHPFPDCTQLQAIFKIGEN-ASPEIPSNISSEAIDFLEKTFEIDHNKRPTAAELL 262 (267)
T ss_pred hCCCCCCCccHHHHHHHHhcc-CCCcCCcccCHHHHHHHHHHccCCchhCcCHHHHh
Confidence 688999887665555544332 22345567889999999999999999999987654
No 61
>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells
Probab=90.81 E-value=0.76 Score=29.91 Aligned_cols=59 Identities=10% Similarity=0.110 Sum_probs=40.9
Q ss_pred cccccCCCCccHHHHHH----HhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGR----LVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLF 61 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~----~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l 61 (86)
.|.+||......+.... .........+...++..+..+++.+. ...+++|..+.+...|
T Consensus 205 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l 267 (269)
T cd05087 205 LGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHLLL 267 (269)
T ss_pred CCCCCCCCCChHHHHHHHhhcccCCCCCCccCCCCChHHHHHHHHHh-cCcccCCCHHHHHHHh
Confidence 38999987654432211 11122334556678889999999997 6899999999988765
No 62
>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I
Probab=90.30 E-value=0.74 Score=29.66 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=39.0
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcC-CChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHN-PSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~-~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|..||........+.+++......... .+.+.++.+++..+-+....++|+...+.
T Consensus 213 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll 270 (275)
T cd06608 213 DGKPPLCDMHPMRALFKIPRNPPPTLKSPENWSKKFNDFISECLIKNYEQRPFMEELL 270 (275)
T ss_pred hCCCCccccchHHHHHHhhccCCCCCCchhhcCHHHHHHHHHHhhcChhhCcCHHHHh
Confidence 6889998765555555555433222222 23567899999999999999999887664
No 63
>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase
Probab=90.06 E-value=1.5 Score=28.28 Aligned_cols=63 Identities=8% Similarity=0.142 Sum_probs=42.8
Q ss_pred cccccCCCCcc-HHHHHHH-hHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 2 EADLTWVREEQ-IVARGRL-VMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 2 ~G~LPW~~~~~-~~~i~~~-K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
+|..||..... ...+... +............|..+.+++..+-.....++|+...+.+.|+++
T Consensus 201 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~ 265 (267)
T cd08228 201 ALQSPFYGDKMNLFSLCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQM 265 (267)
T ss_pred cCCCCCccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHh
Confidence 58889976532 2222222 222222333345678899999999999999999999999988764
No 64
>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays
Probab=90.05 E-value=1.6 Score=28.26 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=45.4
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILF 65 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~ 65 (86)
|..|+......+.....+.... .....++|.++..++.-+-+....++|..+.+.+.|+.++
T Consensus 202 g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~~ 263 (263)
T cd05052 202 GMSPYPGIDLSQVYELLEKGYR-MERPEGCPPKVYELMRACWQWNPSDRPSFAEIHQAFETMF 263 (263)
T ss_pred CCCCCCCCCHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhhC
Confidence 7888877544333333333222 2345778999999999999999999999999999987753
No 65
>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign
Probab=89.42 E-value=1.8 Score=28.36 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=32.5
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Q psy9733 30 PSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILF 65 (86)
Q Consensus 30 ~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~ 65 (86)
..+|.++..++..+-+....++|+++.+...|.++.
T Consensus 247 ~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~ 282 (283)
T cd05080 247 KNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH 282 (283)
T ss_pred CCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence 457899999999999999999999999999988764
No 66
>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4. Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.
Probab=89.06 E-value=1.4 Score=28.51 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=40.3
Q ss_pred cccccCCCCccHHHHHHHhHc-CCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMV-APSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~-~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|.+||........+...... .....+....+.++..++..+-.....++|+...+.
T Consensus 203 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l 260 (265)
T cd06631 203 TGKPPLASMDRLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHERPSALQLL 260 (265)
T ss_pred hCCCccccCChHHHHHHhhhccCCCCCCCCCCCHHHHHHHHHHhcCCcccCCCHHHHh
Confidence 689999877655444433332 233456677888999999999999999999876543
No 67
>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological
Probab=88.99 E-value=1.7 Score=28.19 Aligned_cols=59 Identities=7% Similarity=0.088 Sum_probs=41.4
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
|..||......+.....+ ......+-..+|.++.+++..+-.....++|.+..+.+.|.
T Consensus 218 g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~ 276 (277)
T cd05032 218 AEQPYQGLSNEEVLKFVI-DGGHLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVSSLK 276 (277)
T ss_pred CCCCCccCCHHHHHHHHh-cCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHhc
Confidence 788987765443333333 22222233456899999999999999999999999988764
No 68
>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron. Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca
Probab=88.86 E-value=2.7 Score=27.01 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=42.8
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFR 66 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~ 66 (86)
|..|+......+.+..... ......-..+|.++.+++..+-.....++|++..+.+.|.+++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~~ 261 (262)
T cd05058 199 GAPPYPDVDSFDITVYLLQ-GRRLLQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIFS 261 (262)
T ss_pred CCCCCCCCCHHHHHHHHhc-CCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHhc
Confidence 5566666544333322211 11112224568899999999999999999999999999988763
No 69
>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh
Probab=88.76 E-value=1.9 Score=28.11 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=42.9
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
|..||...... .+.+.........+...+|.++..++..+-+....++|....+.+.|.
T Consensus 218 ~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~ 276 (277)
T cd05062 218 AEQPYQGMSNE-QVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIK 276 (277)
T ss_pred CCCCCCCCCHH-HHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhh
Confidence 78899876543 333333333334455778899999999999999999999988877664
No 70
>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi
Probab=88.64 E-value=1.6 Score=27.83 Aligned_cols=56 Identities=5% Similarity=-0.019 Sum_probs=39.0
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|..||.... ...+.+.........+-...|..+.+++..+-+....++|+...+.
T Consensus 205 ~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il 260 (265)
T cd08217 205 ALSPPFTARN-QLQLASKIKEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPSTEELL 260 (265)
T ss_pred HCCCcccCcC-HHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHHHh
Confidence 5888998765 3333333333333445566778999999999999999999887764
No 71
>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt
Probab=88.56 E-value=2.2 Score=27.74 Aligned_cols=59 Identities=7% Similarity=0.009 Sum_probs=44.0
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
|.+||......+.+...+... .......+|.++.+++.-+-.....++|+...+...|.
T Consensus 221 g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~ 279 (280)
T cd05049 221 GKQPWYGLSNEEVIECITQGR-LLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQ 279 (280)
T ss_pred CCCCCCCCCHHHHHHHHHcCC-cCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhh
Confidence 899998776555555444322 22334578899999999999999999999988887764
No 72
>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it
Probab=88.49 E-value=0.69 Score=30.66 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=44.2
Q ss_pred cccccCCCCccHHHH-HHHhHcC-CccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcccc
Q psy9733 2 EADLTWVREEQIVAR-GRLVMVA-PSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLYHN 78 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i-~~~K~~~-~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~~~~~~~~DW 78 (86)
+|..||.......++ ....... ........++.++.+++..+-+....++|+++.+... ..+.+..-+.+++.+|
T Consensus 213 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~--~~~~~~~~~~~~~~~~ 289 (296)
T cd06618 213 TGQFPYKNCKTEFEVLTKILQEEPPSLPPNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQH--PFIRRYETAEVDVAGW 289 (296)
T ss_pred hCCCCCCcchhHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcC--hhhhccchhHHHHHHH
Confidence 688999775432222 2211111 1111123568899999999999999999998777544 2233333344455555
No 73
>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular
Probab=88.39 E-value=2 Score=27.54 Aligned_cols=60 Identities=8% Similarity=0.080 Sum_probs=41.9
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
.|.+||................. ......+|.++.+++..+-.....++|.++.+.+.|.
T Consensus 192 ~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~ 251 (252)
T cd05084 192 LGAVPYANLSNQQTREAIEQGVR-LPCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ 251 (252)
T ss_pred CCCCCccccCHHHHHHHHHcCCC-CCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence 38889977654332222222222 2334567889999999999999999999999988764
No 74
>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t
Probab=88.30 E-value=1.7 Score=27.90 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=39.9
Q ss_pred CcccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 1 MEADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 1 ~~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
++|.+||...+....+...........+-..++..+..++..+-.....++|....+.
T Consensus 201 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll 258 (263)
T cd06625 201 LTEKPPWAEFEAMAAIFKIATQPTNPQLPSHVSPDARNFLRRTFVENAKKRPSAEELL 258 (263)
T ss_pred HhCCCCccccchHHHHHHHhccCCCCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHh
Confidence 3688999887655555444333333345566788899999988888899999765543
No 75
>KOG1026|consensus
Probab=88.12 E-value=3 Score=32.59 Aligned_cols=68 Identities=6% Similarity=-0.014 Sum_probs=55.3
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCC
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNH 70 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~~ 70 (86)
-|..||-+..+.+.|...+.. ..-.--.+||.++..+|.-+=+..-.++|...-|...|.+.......
T Consensus 701 yG~QPy~glSn~EVIe~i~~g-~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~s~~ 768 (774)
T KOG1026|consen 701 YGKQPYYGLSNQEVIECIRAG-QLLSCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQASPK 768 (774)
T ss_pred cccCcccccchHHHHHHHHcC-CcccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhcCcc
Confidence 388999999988777665543 22222378999999999999999999999999999999999876643
No 76
>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=87.55 E-value=4.9 Score=26.37 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=43.5
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
|..||....... +...-..-.....-..+|..+..++..+.......+|....+.+.|..+++.
T Consensus 208 g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~~ 271 (279)
T cd05111 208 GAEPYAGMRPHE-VPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENVRPTFKELANEFTRMARD 271 (279)
T ss_pred CCCCCCCCCHHH-HHHHHHCCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHhC
Confidence 889998865332 2221111111111234577888899999999999999999999999888764
No 77
>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well
Probab=86.75 E-value=4.1 Score=26.58 Aligned_cols=60 Identities=8% Similarity=0.082 Sum_probs=42.7
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
.|.+||......+.+ ..-...........+|.++..++..+-+....++|+.+.+.+.|.
T Consensus 217 ~g~~pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~ 276 (277)
T cd05036 217 LGYMPYPGRTNQEVM-EFVTGGGRLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATILERIQ 276 (277)
T ss_pred CCCCCCCCCCHHHHH-HHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence 388999876544332 222222223344678899999999999999999999998877663
No 78
>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6. Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs
Probab=86.26 E-value=2.1 Score=27.92 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=40.1
Q ss_pred cccccCCCCc-cHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHH
Q psy9733 2 EADLTWVREE-QIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQ 59 (86)
Q Consensus 2 ~G~LPW~~~~-~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~ 59 (86)
+|..||.... ..+.+...+...........+|.++..++..+-.-...++|+++.+.+
T Consensus 202 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~ 260 (283)
T cd06617 202 TGRFPYDSWKTPFQQLKQVVEEPSPQLPAEKFSPEFQDFVNKCLKKNYKERPNYPELLQ 260 (283)
T ss_pred hCCCCCCccccCHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 5888997643 334444444433333223457889999999999999999999977754
No 79
>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=86.21 E-value=5.8 Score=26.38 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=43.8
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
|.+||.+..........+.... ......++..+..++..+-....+++|.++.+...|..+...
T Consensus 208 g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~ 271 (303)
T cd05110 208 GGKPYDGIPTREIPDLLEKGER-LPQPPICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMARD 271 (303)
T ss_pred CCCCCCCCCHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 8899987643322222222111 112244677889999999899999999999999999988654
No 80
>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=85.83 E-value=4.4 Score=26.23 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=41.2
Q ss_pred ccccCCCCccHHHHHHHhHc----CCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMV----APSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLF 61 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~----~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l 61 (86)
|.+||....+.+.+...... .+...+...++..+..++..+. .+.+++|..+-+.++|
T Consensus 206 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l 267 (269)
T cd05042 206 ADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQFCW-LDPETRPTAEEVHELL 267 (269)
T ss_pred CCCCCCcCCHHHHHHHHhhccCccCCCCcccccCCHHHHHHHHHHh-cCcccccCHHHHHHHh
Confidence 78999887655433332222 2334566778889999988887 5999999999888776
No 81
>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a
Probab=85.29 E-value=4.5 Score=25.96 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=40.8
Q ss_pred cccccCCCCc-cHHHHHHHhHcCCccCcC-CChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 2 EADLTWVREE-QIVARGRLVMVAPSYWHN-PSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 2 ~G~LPW~~~~-~~~~i~~~K~~~~~~~l~-~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
+|..||.... ....+.+.........+. ...|.++.+++..+-.....++|+...+.+.|.++
T Consensus 201 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~ 265 (267)
T cd08224 201 ALQSPFYGDKMNLYSLCKKIEKCDYPPLPADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEM 265 (267)
T ss_pred HCCCCcccCCccHHHHHhhhhcCCCCCCChhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHh
Confidence 5778886653 222222221111111222 25677899999999999999999999999888764
No 82
>KOG0197|consensus
Probab=84.97 E-value=5.4 Score=29.50 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=53.4
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
.|..|-.+..+.+.|....+..+...= .+||.++.++|..+=..+-+++|-.+.++..|.++...
T Consensus 400 ~G~~py~~msn~ev~~~le~GyRlp~P-~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~~ 464 (468)
T KOG0197|consen 400 YGRVPYPGMSNEEVLELLERGYRLPRP-EGCPDEVYELMKSCWHEDPEDRPTFETLREVLEDFFTS 464 (468)
T ss_pred cCCCCCCCCCHHHHHHHHhccCcCCCC-CCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHhhhc
Confidence 477888888888888887776543221 56899999999999999999999999999999988754
No 83
>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan
Probab=84.19 E-value=4.2 Score=25.77 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=41.6
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLF 61 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l 61 (86)
|..||......+.....+... ....-..+|.++..++...-.....++|....+.+.|
T Consensus 204 g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l 261 (262)
T cd00192 204 GATPYPGLSNEEVLEYLRKGY-RLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVERL 261 (262)
T ss_pred CCCCCCCCCHHHHHHHHHcCC-CCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence 689998885544444443322 2233356688999999999999999999999888765
No 84
>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily.
Probab=84.18 E-value=3.9 Score=25.42 Aligned_cols=58 Identities=7% Similarity=-0.119 Sum_probs=36.9
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcC--CChHHHHHHHHHHHhCCCCCCCCChHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHN--PSFPAEFAMYLNYCRGLRFEEAPDYMYLRQ 59 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~--~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~ 59 (86)
+|..||....+...+.+........... ..+|.++.+++..+-.....++|+...+.+
T Consensus 181 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~ 240 (244)
T smart00220 181 TGKPPFPGDDQLLELFKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEKRLTAEEALQ 240 (244)
T ss_pred hCCCCCCCCCcHHHHHHHHhccCCCCccccccCCHHHHHHHHHHccCCchhccCHHHHhh
Confidence 5778887744444444333322222211 227889999999998889999998876643
No 85
>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory
Probab=84.13 E-value=4.7 Score=26.39 Aligned_cols=60 Identities=8% Similarity=0.030 Sum_probs=43.4
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
.|.+||......+.+........ ...-..+|..+.+++..+-.....++|..+.+...|.
T Consensus 220 ~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~ 279 (280)
T cd05092 220 YGKQPWYQLSNTEAIECITQGRE-LERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQ 279 (280)
T ss_pred CCCCCCccCCHHHHHHHHHcCcc-CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHh
Confidence 38999988765544433322222 2233567889999999999999999999999988764
No 86
>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=83.69 E-value=5.7 Score=25.31 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=41.3
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
|..||............+.... ......+|.++.+++..+-+....++|.+..+.+.|.
T Consensus 192 ~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~ 250 (251)
T cd05041 192 GDTPYPGMSNQQTRERIESGYR-MPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ 250 (251)
T ss_pred cCCCCccCCHHHHHHHHhcCCC-CCCCccCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence 7889987754333222322211 1223567899999999999999999999998887764
No 87
>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit
Probab=83.59 E-value=5.7 Score=26.23 Aligned_cols=60 Identities=7% Similarity=0.020 Sum_probs=41.3
Q ss_pred ccccCCCCccHHHHHHHhHcC----Cc--cCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVA----PS--YWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~----~~--~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
|..||......+.+...+... .. -..-..+|..+.+++..+-+-...++|..+.+.+.|.
T Consensus 230 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~ 295 (296)
T cd05095 230 KEQPYSQLSDEQVIENTGEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHATLL 295 (296)
T ss_pred CCCCccccChHHHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence 788998775544443322211 00 1112457889999999999999999999999988875
No 88
>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome. Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds
Probab=82.80 E-value=6.3 Score=25.44 Aligned_cols=58 Identities=10% Similarity=0.112 Sum_probs=39.8
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLF 61 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l 61 (86)
|.+||......+.+........ .......+.++.+++..+-+....++|+...+...+
T Consensus 198 g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~ 255 (256)
T cd05113 198 GKMPYERFNNSETVEKVSQGLR-LYRPHLASEKVYAIMYSCWHEKAEERPTFQQLLSSI 255 (256)
T ss_pred CCCCcCcCCHHHHHHHHhcCCC-CCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHhh
Confidence 8899987765443333322211 122334578999999999999999999998887654
No 89
>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc
Probab=82.72 E-value=4.3 Score=25.86 Aligned_cols=56 Identities=11% Similarity=0.107 Sum_probs=38.5
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|..||........+...... ....+...+|.++.+++..+-+....++|+...+.
T Consensus 196 ~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll 251 (256)
T cd08529 196 TGKHPFDANNQGALILKIIRG-VFPPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLL 251 (256)
T ss_pred hCCCCCCCCCHHHHHHHHHcC-CCCCCccccCHHHHHHHHHHccCCcccCcCHHHHh
Confidence 588999877644433333322 22334446788999999999999999999976553
No 90
>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including
Probab=82.61 E-value=6.3 Score=26.01 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=40.6
Q ss_pred ccccCCCCccHHHHHHHhHcC------CccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVA------PSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~------~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
|..||......+.+....... .....-..+|..+.+++..+-+-...++|+++.+.+.|.
T Consensus 229 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~ 294 (295)
T cd05097 229 KEQPYSLLSDEQVIENTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLR 294 (295)
T ss_pred CCCCCcccChHHHHHHHHHhhhhccccccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence 677888765444333322111 011122346789999999999999999999999988875
No 91
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=82.60 E-value=8.9 Score=25.41 Aligned_cols=64 Identities=9% Similarity=-0.031 Sum_probs=45.9
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
|..|+......+.+...+.... ......+|.++..++..+-.-...++|+...+.+.|++++.-
T Consensus 236 g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~ 299 (304)
T cd05101 236 GGSPYPGIPVEELFKLLKEGHR-MDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRILTL 299 (304)
T ss_pred CCCCcccCCHHHHHHHHHcCCc-CCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHHHh
Confidence 6778876644333333333222 223456788999999999999999999999999999888754
No 92
>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase. Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M
Probab=82.32 E-value=6.8 Score=25.64 Aligned_cols=59 Identities=7% Similarity=0.040 Sum_probs=41.3
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
|..||......+.+...+.. .......++|.++.+++..+-+....++|....+.+.|.
T Consensus 229 ~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~ 287 (288)
T cd05050 229 GMQPYYGMAHEEVIYYVRDG-NVLSCPDNCPLELYNLMRLCWSKLPSDRPSFASINRILQ 287 (288)
T ss_pred CCCCCCCCCHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhh
Confidence 66788766544444333321 112234567889999999999999999999999888775
No 93
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=82.15 E-value=6.2 Score=26.34 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=39.4
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQ 59 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~ 59 (86)
+|..|+........+........+.......+.++..+++.+-.....++|....+..
T Consensus 209 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~ 266 (308)
T cd06634 209 ERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK 266 (308)
T ss_pred cCCCCCccccHHHHHHHHhhcCCCCcCcccccHHHHHHHHHHhhCCcccCCCHHHHhh
Confidence 5778887765444444443333333334567788999999999889999999876554
No 94
>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=81.80 E-value=4.7 Score=26.34 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=38.8
Q ss_pred cccccCCCCccHHHHHHHhH--cCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVM--VAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQ 59 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~--~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~ 59 (86)
+|.+||.............. ......+...++.++..++.-+-......+|.++.+..
T Consensus 202 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~ 261 (286)
T cd06622 202 LGRYPYPPETYANIFAQLSAIVDGDPPTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLE 261 (286)
T ss_pred hCCCCCCCcchhhHHHHHHHHhhcCCCCCCcccCHHHHHHHHHHcccCcccCCCHHHHhc
Confidence 68999977543322222211 12233445567889999999999999999999876665
No 95
>PHA03259 Capsid triplex subunit 2; Provisional
Probab=81.57 E-value=1.6 Score=30.45 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=26.8
Q ss_pred CCCCChHHHHHHHHHHHHH--------------------cCCCCCCccccCCCccc
Q psy9733 49 EEAPDYMYLRQLFRILFRT--------------------LNHQYDYLYHNNSSSLL 84 (86)
Q Consensus 49 ~~~PdY~~l~~~l~~~~~~--------------------~~~~~~~~~DW~~~~~~ 84 (86)
...|||-.++..+++++-. ..+++.+||+|++...+
T Consensus 50 ~~~pDyl~l~~~lr~~tlaIl~~V~p~~L~L~~~~~~~~y~IkNTgPF~w~nGD~L 105 (302)
T PHA03259 50 DSTRDYARIRTLLRNMTLTILRRVEGNQLLLGVPTHGHLYTIKNTGPVLWEKGDTL 105 (302)
T ss_pred CCCccHHHHHHHHHHHhHHHHhhhcCCeEEEeecCCCceEEEEeccceeecCCCEE
Confidence 7899999888887776543 12566789999987654
No 96
>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent
Probab=81.42 E-value=3.3 Score=26.88 Aligned_cols=57 Identities=7% Similarity=-0.007 Sum_probs=38.4
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCC-ChHHHHHHHHHHHhCCCCCCCCChHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNP-SFPAEFAMYLNYCRGLRFEEAPDYMYLRQ 59 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~-~~P~ef~~~~~~i~~L~y~~~PdY~~l~~ 59 (86)
+|..||........+...... ....+.. ..|.++.+++..+-.....++|....+..
T Consensus 197 ~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~il~ 254 (277)
T cd06917 197 TGNPPYSDVDAFRAMMLIPKS-KPPRLEDNGYSKLLREFVAACLDEEPKERLSAEELLK 254 (277)
T ss_pred hCCCCCCCCChhhhhhccccC-CCCCCCcccCCHHHHHHHHHHcCCCcccCcCHHHHhh
Confidence 688999877554443322222 2223333 37889999999999999999999766643
No 97
>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re
Probab=80.70 E-value=3.4 Score=26.34 Aligned_cols=61 Identities=5% Similarity=-0.220 Sum_probs=40.3
Q ss_pred cccccCCCCccHHHHHHHhH-cCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVM-VAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRI 63 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~-~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~ 63 (86)
+|..||.............. .......+ ..|.++..++..+-+.....+|.+..+.+++..
T Consensus 196 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~~ 257 (265)
T cd05579 196 VGIPPFHGETPEEIFQNILNGKIEWPEDV-EVSDEAIDLISKLLVPDPEKRLGAKSIEEIKNH 257 (265)
T ss_pred hCCCCCCCCCHHHHHHHHhcCCcCCCccc-cCCHHHHHHHHHHhcCCHhhcCCCccHHHHhcC
Confidence 58889977654443333322 11222222 247889999999999999999999888777653
No 98
>KOG1024|consensus
Probab=80.69 E-value=7.8 Score=28.66 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=47.2
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
.|.+|.......+.-.-.|...+..+- -+||.|+-.+|.|+=.|--+|+|-.+.+...|.+.
T Consensus 494 lg~~PyaeIDPfEm~~ylkdGyRlaQP-~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLseF 555 (563)
T KOG1024|consen 494 LGKLPYAEIDPFEMEHYLKDGYRLAQP-FNCPDELFTVMACCWALLPEERPSFSQLVICLSEF 555 (563)
T ss_pred cCCCCccccCHHHHHHHHhccceecCC-CCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 367777766544443445665554443 57999999999999999999999999999888764
No 99
>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They
Probab=80.44 E-value=6.9 Score=24.71 Aligned_cols=56 Identities=9% Similarity=0.012 Sum_probs=38.6
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
.|..||......+..... .......+...+|.++..++..+-....+++|+...+.
T Consensus 198 ~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll 253 (258)
T cd08215 198 TLKHPFEGENLLELALKI-LKGQYPPIPSQYSSELRNLVSSLLQKDPEERPSIAQIL 253 (258)
T ss_pred cCCCCCCCCcHHHHHHHH-hcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence 578888776533332222 23334455567888999999999999999999887654
No 100
>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops
Probab=80.08 E-value=6 Score=25.17 Aligned_cols=56 Identities=13% Similarity=0.024 Sum_probs=34.1
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYL 57 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l 57 (86)
.|..||......+.+...........+...++..+.+++..+-+....++|....+
T Consensus 197 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~ 252 (258)
T cd06632 197 TGKPPWSQLEGVAAVFKIGRSKELPPIPDHLSDEAKDFILKCLQRDPSLRPTAAEL 252 (258)
T ss_pred hCCCCcccCcHHHHHHHHHhcccCCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHH
Confidence 57788877654444333332222333445566778888887777778888876554
No 101
>PF01802 Herpes_V23: Herpesvirus VP23 like capsid protein; InterPro: IPR002690 This family consist of various capsid proteins from members of the Herpesviridae. The capsid protein VP23 in Human herpesvirus 1 (HHV-1) (Human herpes simplex virus 1) forms a triplex together with VP19C these fit between and link together adjacent capsomers as formed by VP5 and VP26 []. VP3 along with the scaffolding proteins helps to form normal capsids by defining the curvature of the shell and size of the particle [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=80.07 E-value=1.9 Score=29.92 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=26.9
Q ss_pred CCCCChHHHHHHHHHHHHH--------------------cCCCCCCccccCCCccc
Q psy9733 49 EEAPDYMYLRQLFRILFRT--------------------LNHQYDYLYHNNSSSLL 84 (86)
Q Consensus 49 ~~~PdY~~l~~~l~~~~~~--------------------~~~~~~~~~DW~~~~~~ 84 (86)
+..|||-.++..+++++-. ..+++.+||||++...+
T Consensus 50 ~~~pDy~~l~~~lr~~t~aIl~~V~p~~l~l~~l~~g~~y~ikNTgPf~w~ngd~l 105 (296)
T PF01802_consen 50 GTEPDYLSLLSALRRRTLAILRRVEPNQLILTVLDHGQGYQIKNTGPFDWCNGDQL 105 (296)
T ss_pred CCCccHHHHHHHHHhhhHHHHhhhcCCeEEEEecCCCCceEEeecCCeeccCCCEE
Confidence 7889998888888776543 12456799999987654
No 102
>KOG4257|consensus
Probab=80.06 E-value=1.8 Score=33.68 Aligned_cols=68 Identities=7% Similarity=0.109 Sum_probs=53.9
Q ss_pred CcccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcC
Q psy9733 1 MEADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLN 69 (86)
Q Consensus 1 ~~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~ 69 (86)
|.|.=||.+.++.+.|+.+-..-+ --.=.+||+.+..++.-+=......+|.+..|+..|.+++....
T Consensus 587 ~lGvkPfqgvkNsDVI~~iEnGeR-lP~P~nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~qeek 654 (974)
T KOG4257|consen 587 SLGVKPFQGVKNSDVIGHIENGER-LPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQEEK 654 (974)
T ss_pred HhcCCccccccccceEEEecCCCC-CCCCCCCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHHHHhh
Confidence 458889999999888876543322 11226789999999999999999999999999999999988443
No 103
>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho
Probab=79.80 E-value=5.2 Score=25.86 Aligned_cols=51 Identities=10% Similarity=0.063 Sum_probs=30.5
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCC
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPD 53 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~Pd 53 (86)
+|..||........+.+.........+..+++.++.+++..+-. ....+|.
T Consensus 204 ~g~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~-~~~~r~~ 254 (264)
T cd06653 204 TEKPPWAEYEAMAAIFKIATQPTKPMLPDGVSDACRDFLKQIFV-EEKRRPT 254 (264)
T ss_pred hCCCCCCccCHHHHHHHHHcCCCCCCCCcccCHHHHHHHHHHhc-CcccCcc
Confidence 58889987765555554433333345566666777777777655 2344443
No 104
>smart00219 TyrKc Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily.
Probab=79.74 E-value=6.8 Score=24.85 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=39.5
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQL 60 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~ 60 (86)
|..|+......+.+...+.... ...-..+|.++.+++..+-+....++|....+.+.
T Consensus 201 g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~ 257 (258)
T smart00219 201 GESPYPGMSNEEVLEYLKKGYR-LPKPENCPPEIYKLMLQCWAEDPEDRPTFSELVEI 257 (258)
T ss_pred CCCCCCCCCHHHHHHHHhcCCC-CCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHhh
Confidence 7788877554444333333222 22334578999999999999999999998887664
No 105
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=79.24 E-value=5.7 Score=24.91 Aligned_cols=56 Identities=16% Similarity=0.086 Sum_probs=36.9
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCCh--HHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSF--PAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~--P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|..||........+...+. .....+..+. |.++.+++..+-+....++|+...+.
T Consensus 192 ~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l 249 (253)
T cd05122 192 EGKPPYSELPPMKALFKIAT-NGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQLL 249 (253)
T ss_pred hCCCCCCCCchHHHHHHHHh-cCCCCcCcccccCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 58889988755444444443 2222333333 77899999888888889999876543
No 106
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=79.09 E-value=13 Score=24.84 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=44.3
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
|..||.+....+ +............-..++..+..++..+-.....++|.+..+...|..+.+.
T Consensus 208 g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~~ 271 (316)
T cd05108 208 GSKPYDGIPASE-ISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD 271 (316)
T ss_pred CCCCCCCCCHHH-HHHHHhCCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHcC
Confidence 889998765432 2222221111112245678899999999999999999999999999888754
No 107
>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=78.90 E-value=17 Score=24.32 Aligned_cols=65 Identities=9% Similarity=0.026 Sum_probs=46.8
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHc
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTL 68 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~ 68 (86)
|..||......+..... ...........+|.++.+++.-+-+....++|....+.+.|.++....
T Consensus 233 g~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~~~ 297 (314)
T cd05099 233 GGSPYPGIPVEELFKLL-REGHRMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLAAV 297 (314)
T ss_pred CCCCCCCCCHHHHHHHH-HcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHHh
Confidence 78899776543333322 222222334567889999999999999999999999999999887643
No 108
>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac
Probab=78.85 E-value=13 Score=23.90 Aligned_cols=61 Identities=10% Similarity=0.144 Sum_probs=41.3
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
|..||......+ +............-...|..+.+++..+-+...+++|.+..+...|.++
T Consensus 212 g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~ 272 (273)
T cd05074 212 GQTPYAGVENSE-IYNYLIKGNRLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI 272 (273)
T ss_pred CCCCCCCCCHHH-HHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 778887765432 2222222111111245678999999999999999999999999988765
No 109
>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates
Probab=78.78 E-value=4.4 Score=26.51 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=36.9
Q ss_pred cccccCCCCccH-HHHHHHhHcCCc---cCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHH
Q psy9733 2 EADLTWVREEQI-VARGRLVMVAPS---YWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQ 59 (86)
Q Consensus 2 ~G~LPW~~~~~~-~~i~~~K~~~~~---~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~ 59 (86)
+|.+||...... +.+.+......+ ......++.++.+++..+-+....++|.++.+..
T Consensus 205 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~ 266 (288)
T cd06616 205 TGKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELLE 266 (288)
T ss_pred hCCCCchhcchHHHHHhhhcCCCCCcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 688999876422 222222111111 1112347889999999999999999999876544
No 110
>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase. Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.
Probab=78.50 E-value=7.3 Score=25.44 Aligned_cols=56 Identities=11% Similarity=0.126 Sum_probs=37.4
Q ss_pred cccccCCCCccHHHHHHHhHcCCcc-CcCCChHHHHHHHHHHHhCCCCCCCCChHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSY-WHNPSFPAEFAMYLNYCRGLRFEEAPDYMYL 57 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~-~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l 57 (86)
+|..|+........+.......... ..-..+|.++.+++..+-+...+++|+.+.+
T Consensus 203 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i 259 (282)
T cd06643 203 QIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQL 259 (282)
T ss_pred cCCCCccccCHHHHHHHHhhcCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence 5788888766555555544332222 1123567889999999988899999997644
No 111
>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int
Probab=77.94 E-value=9.2 Score=24.91 Aligned_cols=57 Identities=5% Similarity=-0.036 Sum_probs=40.8
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQ 59 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~ 59 (86)
+|.+||........+... .......+...+|.++.+++..+-......+|++.-+.+
T Consensus 196 ~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~ 252 (277)
T cd06641 196 KGEPPHSELHPMKVLFLI-PKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLK 252 (277)
T ss_pred cCCCCCCccchHHHHHHH-hcCCCCCCCcccCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 688999876543333322 222334455678899999999999999999999888776
No 112
>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity. Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....
Probab=77.93 E-value=5.9 Score=25.75 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=39.6
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLF 61 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l 61 (86)
|..|+......+.+...+.... ...-..+|..+..++.-+-+-...++|+...+.+.|
T Consensus 202 ~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L 259 (259)
T PF07714_consen 202 GKFPFSDYDNEEIIEKLKQGQR-LPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL 259 (259)
T ss_dssp SSGTTTTSCHHHHHHHHHTTEE-TTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred cccccccccccccccccccccc-ceeccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence 6789988865554444433322 233456899999999999999999999999887654
No 113
>KOG0193|consensus
Probab=77.69 E-value=3.6 Score=31.52 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=52.9
Q ss_pred CcccccCCCCccHHHHHHHhHcC----CccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 1 MEADLTWVREEQIVARGRLVMVA----PSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 1 ~~G~LPW~~~~~~~~i~~~K~~~----~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
|+|.||-+ ....++|.-|+-+- .....-.+||+++.+++.-+=...-+|+|=+..|-..|+.++..
T Consensus 587 ltg~lPys-i~~~dqIifmVGrG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~~ 656 (678)
T KOG0193|consen 587 LTGELPYS-IQNRDQIIFMVGRGYLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLPS 656 (678)
T ss_pred HhCcCCcC-CCChhheEEEecccccCccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhhc
Confidence 57999999 66667766555432 23455688999999999999999999999999999988888774
No 114
>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an
Probab=76.45 E-value=11 Score=23.97 Aligned_cols=56 Identities=5% Similarity=-0.057 Sum_probs=38.0
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
.|..||....... +...........+..+.+.++..++..+-+....++|....+.
T Consensus 196 ~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l 251 (256)
T cd08530 196 TFAPPFEARSMQD-LRYKVQRGKYPPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKIL 251 (256)
T ss_pred hCCCCCCCCCHHH-HHHHHhcCCCCCCchhhCHHHHHHHHHHcCCCcccCCCHHHHh
Confidence 5788997765332 2222222333445567788899999999999999999887654
No 115
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=75.43 E-value=4.6 Score=22.38 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCCC----------CCccccCCCcccc
Q psy9733 56 YLRQLFRILFRTLNHQY----------DYLYHNNSSSLLL 85 (86)
Q Consensus 56 ~l~~~l~~~~~~~~~~~----------~~~~DW~~~~~~~ 85 (86)
.+++.+.++++..|+.. +.+.||+....++
T Consensus 21 ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~~~qD~~~L 60 (73)
T cd01817 21 SIRDLLSGLCEKRGINYAAVDLFLVGGDKPLVLDQDSSVL 60 (73)
T ss_pred CHHHHHHHHHHHcCCChhHEEEEEecCCcccccCCcccee
Confidence 37888999999988754 6889999887664
No 116
>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2. Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve
Probab=74.49 E-value=18 Score=23.55 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=44.3
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
|..||......... ...........-..+|.++..++..+-......+|....+...|..+...
T Consensus 208 g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~ 271 (279)
T cd05109 208 GAKPYDGIPAREIP-DLLEKGERLPQPPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMARD 271 (279)
T ss_pred CCCCCCCCCHHHHH-HHHHCCCcCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcC
Confidence 88999876543322 22222111122345678999999999999999999999999988877543
No 117
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=73.79 E-value=9.9 Score=25.48 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=39.7
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|..||........+........+.......+..+..++..+-+....++|....+.
T Consensus 215 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l 271 (313)
T cd06633 215 ERKPPLFNMNAMSALYHIAQNDSPTLQSNEWTDSFRGFVDYCLQKIPQERPASAELL 271 (313)
T ss_pred hCCCCCCCCChHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 578888887655555554443333444455677899999999999999999876544
No 118
>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK
Probab=73.51 E-value=9.6 Score=23.97 Aligned_cols=57 Identities=12% Similarity=0.040 Sum_probs=35.3
Q ss_pred cccccCCCCccHHH-HHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVA-RGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~-i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
.|..||....+... +......-....+-..+|.++.+++..+-.....++|+...+.
T Consensus 198 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll 255 (260)
T cd06606 198 TGKPPWSELGNPMAALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELL 255 (260)
T ss_pred hCCCCCCCCCchHHHHHhccccCCCcCCCcccCHHHHHHHHHhCcCChhhCCCHHHHh
Confidence 57889988763222 2111111122334455678888888888888888888876553
No 119
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=73.19 E-value=11 Score=24.68 Aligned_cols=56 Identities=21% Similarity=0.161 Sum_probs=37.6
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCc--CCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWH--NPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l--~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|..||........+...... ....+ ..++|.++..++..+-+.....+|+...+.
T Consensus 211 ~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il 268 (286)
T cd06614 211 EGEPPYLREPPLRALFLITTK-GIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELL 268 (286)
T ss_pred hCCCCCCCCCHHHHHHHHHhc-CCCCCcchhhCCHHHHHHHHHHhccChhhCcCHHHHh
Confidence 588898876544333322211 11222 234788999999999999999999998774
No 120
>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.
Probab=72.95 E-value=13 Score=23.92 Aligned_cols=60 Identities=8% Similarity=0.145 Sum_probs=35.1
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLF 61 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l 61 (86)
+|..||........+............-...+.++..++..+-+-.-.++|....+...+
T Consensus 208 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~ 267 (269)
T cd08528 208 TLQPPFYSTNMLSLATKIVEAVYEPLPEGMYSEDVTDVITSCLTPDAEARPDIIQVSAMI 267 (269)
T ss_pred hCCCcccccCHHHHHHHHhhccCCcCCcccCCHHHHHHHHHHCCCCCccCCCHHHHHHHh
Confidence 577787665433322222221111111124567888888888888888888877776655
No 121
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=72.73 E-value=14 Score=24.24 Aligned_cols=57 Identities=12% Similarity=0.112 Sum_probs=36.6
Q ss_pred CcccccCCCCccHHHHHHHhHcCCcc-CcCCChHHHHHHHHHHHhCCCCCCCCChHHH
Q psy9733 1 MEADLTWVREEQIVARGRLVMVAPSY-WHNPSFPAEFAMYLNYCRGLRFEEAPDYMYL 57 (86)
Q Consensus 1 ~~G~LPW~~~~~~~~i~~~K~~~~~~-~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l 57 (86)
++|..||........+.+........ ..-..++.++.+++..+-+...+++|....+
T Consensus 209 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i 266 (292)
T cd06644 209 AQIEPPHHELNPMRVLLKIAKSEPPTLSQPSKWSMEFRDFLKTALDKHPETRPSAAQL 266 (292)
T ss_pred hcCCCCCccccHHHHHHHHhcCCCccCCCCcccCHHHHHHHHHHhcCCcccCcCHHHH
Confidence 36889998765444443333222211 2224566789999999989999999987654
No 122
>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their
Probab=72.51 E-value=12 Score=24.06 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=36.0
Q ss_pred cccccCCCCcc---HHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQ---IVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~---~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
.|.+||..... ...+.+.........+...++.++.+++..+-.....++|+...+.
T Consensus 203 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll 262 (268)
T cd06630 203 TAKPPWNAEKHSNHLALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELL 262 (268)
T ss_pred hCCCCCCCCCCcchHHHHHHHhccCCCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHHh
Confidence 58889876432 2222222222223344456678888999888888999999877654
No 123
>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ
Probab=72.48 E-value=11 Score=24.07 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=37.5
Q ss_pred cccccCCCCccHHHHHHHhHc-CCccCc--CCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMV-APSYWH--NPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~-~~~~~l--~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|..||......+.+...... .....+ ....|.++.++++-+-+....++|....+.
T Consensus 199 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il 258 (262)
T cd06613 199 ELQPPMFDLHPMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLL 258 (262)
T ss_pred hCCCCCCCCCHHHHHHHHHhccCCCccccchhhhhHHHHHHHHHHcCCChhhCCCHHHHh
Confidence 688999887655444433322 222222 234567889999988888899999876553
No 124
>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of
Probab=72.31 E-value=15 Score=23.33 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=36.8
Q ss_pred cccccCCCCc--cH-HHHHHHhHcCCccCcCCC-hHHHHHHHHHHHhCCCCCCCCChHHHHH
Q psy9733 2 EADLTWVREE--QI-VARGRLVMVAPSYWHNPS-FPAEFAMYLNYCRGLRFEEAPDYMYLRQ 59 (86)
Q Consensus 2 ~G~LPW~~~~--~~-~~i~~~K~~~~~~~l~~~-~P~ef~~~~~~i~~L~y~~~PdY~~l~~ 59 (86)
+|..||.... .. +.+...+ ......+... +|..+.+++..+-+....++|....+.+
T Consensus 195 tg~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~ 255 (264)
T cd06623 195 LGKFPFLPPGQPSFFELMQAIC-DGPPPSLPAEEFSPEFRDFISACLQKDPKKRPSAAELLQ 255 (264)
T ss_pred hCCCCCccccccCHHHHHHHHh-cCCCCCCCcccCCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence 5788988774 22 2233333 2223344455 7888999998888888899998766543
No 125
>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)
Probab=72.02 E-value=13 Score=24.01 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=35.3
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCC-hHHHHHHHHHHHhCCCCCCCCChHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPS-FPAEFAMYLNYCRGLRFEEAPDYMYL 57 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~-~P~ef~~~~~~i~~L~y~~~PdY~~l 57 (86)
+|..||........+........ ..+... .|..+.+++..+-....+++|.-..+
T Consensus 193 tg~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~i 248 (274)
T cd06609 193 KGEPPLSDLHPMRVLFLIPKNNP-PSLEGNKFSKPFKDFVSLCLNKDPKERPSAKEL 248 (274)
T ss_pred hCCCCcccCchHHHHHHhhhcCC-CCCcccccCHHHHHHHHHHhhCChhhCcCHHHH
Confidence 68899977654333333332222 233333 78889999999888899999974443
No 126
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=71.53 E-value=25 Score=22.93 Aligned_cols=62 Identities=8% Similarity=-0.055 Sum_probs=43.1
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILF 65 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~ 65 (86)
|..||.+....+.....+...... .-..++..+.+++..+-.....++|.-..+...|.+++
T Consensus 231 g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~~ 292 (293)
T cd05053 231 GGSPYPGIPVEELFKLLKEGYRME-KPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRML 292 (293)
T ss_pred CCCCCCCCCHHHHHHHHHcCCcCC-CCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence 778888765444333333332222 22356788999999988999999999999988887764
No 127
>PHA03257 Capsid triplex subunit 2; Provisional
Probab=71.42 E-value=4.6 Score=28.36 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=25.6
Q ss_pred CCCCChHHHHHHHHHHHHH-----------------------cCCCCCCccccCCCccc
Q psy9733 49 EEAPDYMYLRQLFRILFRT-----------------------LNHQYDYLYHNNSSSLL 84 (86)
Q Consensus 49 ~~~PdY~~l~~~l~~~~~~-----------------------~~~~~~~~~DW~~~~~~ 84 (86)
...|||-.++..+++++-. ..+++.+||||++...+
T Consensus 55 g~~pDyl~l~~~lr~rtlAVl~rV~p~~Lia~~L~~g~~~~~y~IkNTgPF~w~nGD~L 113 (316)
T PHA03257 55 GAEPDTLSLLAAYRRRFPAVITRVLPGRMSAVALGVGPLPPGLFLQNTGPFDLCNGDAV 113 (316)
T ss_pred CCCccHHHHHHHHHHHhHHHHhhhcCCeEEEEeccCCCCCCceEEEecCCeeecCCCEE
Confidence 4779998888887766533 11345789999987654
No 128
>KOG0200|consensus
Probab=71.06 E-value=30 Score=26.16 Aligned_cols=65 Identities=9% Similarity=0.004 Sum_probs=46.8
Q ss_pred cccccCCCCccHHHHH-HHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARG-RLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~-~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
-|..|+-+......+. ..|.....+ .=..|+.++..+|..+=+...+++|....+...|...+..
T Consensus 517 LG~~PYp~~~~~~~l~~~l~~G~r~~-~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~l~~ 582 (609)
T KOG0200|consen 517 LGGTPYPGIPPTEELLEFLKEGNRME-QPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKHLQD 582 (609)
T ss_pred CCCCCCCCCCcHHHHHHHHhcCCCCC-CCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHH
Confidence 3778888765333333 344433322 2245588999999999999999999999999999997653
No 129
>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a
Probab=71.02 E-value=23 Score=23.12 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 30 PSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 30 ~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
.++|.++.+++..+-+.+..++|.++.+.+.|+.+
T Consensus 249 ~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~ 283 (284)
T cd05079 249 PNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI 283 (284)
T ss_pred CCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence 45788999999999999999999999999988775
No 130
>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with
Probab=70.55 E-value=9.2 Score=25.17 Aligned_cols=52 Identities=10% Similarity=-0.024 Sum_probs=33.3
Q ss_pred cccccCCCCccHHHHHHHhHcC--CccCcCCChHHHHHHHHHHHhCCCCCCCCC
Q psy9733 2 EADLTWVREEQIVARGRLVMVA--PSYWHNPSFPAEFAMYLNYCRGLRFEEAPD 53 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~--~~~~l~~~~P~ef~~~~~~i~~L~y~~~Pd 53 (86)
+|.+||................ ....+..+++.++.+++..+-+....++|.
T Consensus 196 ~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~ 249 (285)
T cd05632 196 EGQSPFRGRKEKVKREEVDRRVLETEEVYSAKFSEEAKSICKMLLTKDPKQRLG 249 (285)
T ss_pred hCCCCCCCCCHHHHHHHHHHhhhccccccCccCCHHHHHHHHHHccCCHhHcCC
Confidence 6899998865433322322222 122344567788999998888888777776
No 131
>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity
Probab=70.46 E-value=18 Score=23.17 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 32 FPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 32 ~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
++.++.+++..+-.....++|+...+.
T Consensus 229 ~~~~~~~li~~~l~~~p~~Rpt~~~ll 255 (265)
T cd06605 229 FSPDFQDFVNLCLIKDPRERPSYKELL 255 (265)
T ss_pred cCHHHHHHHHHHcCCCchhCcCHHHHh
Confidence 778899999999999999999976654
No 132
>KOG4278|consensus
Probab=69.85 E-value=9.1 Score=30.13 Aligned_cols=42 Identities=14% Similarity=0.337 Sum_probs=39.1
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCCC
Q psy9733 30 PSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQ 71 (86)
Q Consensus 30 ~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~~~ 71 (86)
.|||+...++|..+=+-+-.|+|.++-|.+.|+.++..+.++
T Consensus 489 eGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtmf~~sSis 530 (1157)
T KOG4278|consen 489 EGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETMFSSSSIS 530 (1157)
T ss_pred CCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhcccccc
Confidence 789999999999999999999999999999999999877664
No 133
>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase. Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1
Probab=69.51 E-value=15 Score=23.40 Aligned_cols=55 Identities=7% Similarity=0.021 Sum_probs=33.7
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCc-----CCChHHHHHHHHHHHhCCCCCCCCChHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWH-----NPSFPAEFAMYLNYCRGLRFEEAPDYMYL 57 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l-----~~~~P~ef~~~~~~i~~L~y~~~PdY~~l 57 (86)
+|.+||......+.+....... ...+ ...+|.++.+++..+-.....++|+-..+
T Consensus 202 ~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l 261 (267)
T cd06610 202 TGAAPYSKYPPMKVLMLTLQND-PPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAEEL 261 (267)
T ss_pred hCCCCccccChhhhHHHHhcCC-CCCcCCccccccccHHHHHHHHHHcCCChhhCcCHHHH
Confidence 6889998765443332222211 1111 13667888888888888888888874443
No 134
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=69.34 E-value=20 Score=23.97 Aligned_cols=59 Identities=10% Similarity=0.092 Sum_probs=39.3
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQL 60 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~ 60 (86)
+|..|+........+................+..+..++..+-+....++|...-+...
T Consensus 219 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~ 277 (317)
T cd06635 219 ERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKH 277 (317)
T ss_pred hCCCCCCCccHHHHHHHHHhccCCCCCCccccHHHHHHHHHHccCCcccCcCHHHHHhC
Confidence 57788877654444444333222222334567789999999889999999998877654
No 135
>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte
Probab=68.66 E-value=16 Score=23.55 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=36.8
Q ss_pred cccccCCCCccHHHHHHH---hHcC-CccCcCCChHHHHHHHHHHHhCCCCCCCCChHHH
Q psy9733 2 EADLTWVREEQIVARGRL---VMVA-PSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYL 57 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~---K~~~-~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l 57 (86)
+|..||........+.+. .... ........+|.++.+++..+-......+|+.+.+
T Consensus 207 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i 266 (272)
T cd06629 207 AGRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTAREL 266 (272)
T ss_pred hCCCCCcCcchHHHHHHhhccccCCcCCccccccCCHHHHHHHHHHhcCChhhCCCHHHH
Confidence 588899766544333221 1111 1234556778899999999999999999986654
No 136
>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom
Probab=67.88 E-value=23 Score=22.90 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=25.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q psy9733 30 PSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLF 61 (86)
Q Consensus 30 ~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l 61 (86)
...+.++..++..+-+....++|++..|...|
T Consensus 230 ~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~ 261 (262)
T cd05077 230 TPSCKELADLMTHCMNYDPNQRPFFRAIMRDI 261 (262)
T ss_pred CCChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence 34467889999999999999999998876554
No 137
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=67.26 E-value=17 Score=23.62 Aligned_cols=56 Identities=9% Similarity=-0.019 Sum_probs=40.1
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|..||........+... .......+...+|..+.+++..+-.-....+|.-..+.
T Consensus 196 tg~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il 251 (277)
T cd06640 196 KGEPPNSDMHPMRVLFLI-PKNNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELL 251 (277)
T ss_pred HCCCCCCCcChHhHhhhh-hcCCCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHH
Confidence 588999876544433322 22234556677899999999999888999999887763
No 138
>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase. Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ
Probab=67.19 E-value=20 Score=23.10 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=32.7
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYM 55 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~ 55 (86)
+|..||............+........-..+|.++.+++..+-.....++|.-+
T Consensus 211 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~ 264 (272)
T cd06637 211 EGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPTTE 264 (272)
T ss_pred hCCCCccccCHHHHHHHHhcCCCCCCCCCCcCHHHHHHHHHHcCCChhhCCCHH
Confidence 578888765443333332222222222345677888888888888888888644
No 139
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=67.02 E-value=20 Score=23.29 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=34.5
Q ss_pred cccccCCCCccHHHHHHHhHcCCcc-CcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSY-WHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~-~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|.+||........+...-...... .....++..+..++..+-+...+++|....+.
T Consensus 224 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell 281 (286)
T cd06638 224 DGDPPLADLHPMRALFKIPRNPPPTLHQPELWSNEFNDFIRKCLTKDYEKRPTVSDLL 281 (286)
T ss_pred cCCCCCCCCchhHHHhhccccCCCcccCCCCcCHHHHHHHHHHccCCcccCCCHHHHh
Confidence 5888888765443333221111111 11233567899999999899999999865543
No 140
>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke
Probab=66.72 E-value=28 Score=22.71 Aligned_cols=60 Identities=8% Similarity=0.078 Sum_probs=39.3
Q ss_pred ccccCCCCccHHHHHHHhHcC---C---ccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVA---P---SYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~---~---~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~ 62 (86)
|..||........+....... . .......+|.++.+++..+-+....++|....+.+.|.
T Consensus 230 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~ 295 (296)
T cd05051 230 REQPYEHLTDQQVIENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQ 295 (296)
T ss_pred CCCCCCCcChHHHHHHHHhccccccccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence 677887765443333222210 0 01122456789999999999999999999999887764
No 141
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=65.77 E-value=19 Score=23.87 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=36.9
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQ 59 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~ 59 (86)
+|..||........+...........-...++.++..++.-+-+....++|.-..+..
T Consensus 209 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 266 (307)
T cd06607 209 ERKPPLFNMNAMSALYHIAQNDSPTLSSNDWSDYFRNFVDSCLQKIPQDRPSSEELLK 266 (307)
T ss_pred cCCCCCCCccHHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence 5788887765544443333322222222346778999999888889999998665543
No 142
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=65.21 E-value=25 Score=23.30 Aligned_cols=58 Identities=9% Similarity=-0.006 Sum_probs=37.9
Q ss_pred cccccCCCCccHHHHHHHhHcCCcc-CcCCChHHHHHHHHHHHhCCCCCCCCChHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSY-WHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQ 59 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~-~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~ 59 (86)
+|.+||......+.+...+...... .....+|..+..++..+-.....++|....+.+
T Consensus 211 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~ 269 (292)
T cd06657 211 DGEPPYFNEPPLKAMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 269 (292)
T ss_pred hCCCCCCCCCHHHHHHHHHhhCCcccCCcccCCHHHHHHHHHHHhCCcccCcCHHHHhc
Confidence 6889998765544444444333221 122456778888888888888889998876544
No 143
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=64.31 E-value=22 Score=26.00 Aligned_cols=57 Identities=11% Similarity=-0.021 Sum_probs=40.6
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQ 59 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~ 59 (86)
+|..||......+.+.. ........+...+|.++..++..+-+....++|....+..
T Consensus 240 tG~~Pf~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~ 296 (496)
T PTZ00283 240 TLKRPFDGENMEEVMHK-TLAGRYDPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLN 296 (496)
T ss_pred HCCCCCCCCCHHHHHHH-HhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHh
Confidence 58889987654333322 2222334456778899999999999999999999987654
No 144
>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=63.92 E-value=23 Score=22.73 Aligned_cols=57 Identities=9% Similarity=-0.063 Sum_probs=33.2
Q ss_pred cccccCCCCccHHHHHHH-hHcCCccCcC--CChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRL-VMVAPSYWHN--PSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~-K~~~~~~~l~--~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|..||........+... +.......+. ..+|..+.+++.-+-....+++|+.+.+.
T Consensus 204 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~ll 263 (267)
T cd06645 204 ELQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKRPTAEKLL 263 (267)
T ss_pred cCCCCcccccchhhHHhhhccCCCCCcccccCCCCHHHHHHHHHHccCCchhCcCHHHHh
Confidence 577888765443333222 1222222221 24567788888888888888888876543
No 145
>PF13413 HTH_25: Helix-turn-helix domain; PDB: 2WUS_R 3FYM_A.
Probab=63.49 E-value=20 Score=18.81 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=27.8
Q ss_pred HHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCCC
Q psy9733 38 MYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQ 71 (86)
Q Consensus 38 ~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~~~ 71 (86)
.+++.|..=.|+.-|+..+++..+++.....|++
T Consensus 25 ~~l~aiE~~~~~~lp~~~y~rg~lr~Ya~~Lgld 58 (62)
T PF13413_consen 25 SYLEAIENGDFDSLPSPVYARGYLRKYARFLGLD 58 (62)
T ss_dssp HHHHHHHCT-GCCSSSHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHCcChhhCCcHHHHHHHHHHHHHHhCcC
Confidence 5677788889999999999999999999888765
No 146
>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.
Probab=63.28 E-value=31 Score=21.91 Aligned_cols=56 Identities=9% Similarity=-0.010 Sum_probs=34.9
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|..|+........+...... ....+....+.++.+++..+-+....++|+...+.
T Consensus 197 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l 252 (257)
T cd08223 197 TLKHAFNAKDMNSLVYRIIEG-KLPPMPKDYSPELGELIATMLSKRPEKRPSVKSIL 252 (257)
T ss_pred cCCCCCCCCCHHHHHHHHHhc-CCCCCccccCHHHHHHHHHHhccCcccCCCHHHHh
Confidence 567777654433322222221 22234456778899999999999999999865543
No 147
>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast
Probab=62.73 E-value=21 Score=22.47 Aligned_cols=56 Identities=14% Similarity=0.035 Sum_probs=34.7
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
.|..||........+...... ....+-..++.++..++..+-....+++|+...+.
T Consensus 194 ~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l 249 (254)
T cd06627 194 TGNPPYYDLNPMAALFRIVQD-DHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQLL 249 (254)
T ss_pred hCCCCCCCccHHHHHHHHhcc-CCCCCCCCCCHHHHHHHHHHHhCChhhCcCHHHHh
Confidence 477888776544444333321 22233355677888888888888888888865543
No 148
>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development
Probab=62.33 E-value=17 Score=23.43 Aligned_cols=53 Identities=9% Similarity=0.078 Sum_probs=28.8
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYM 55 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~ 55 (86)
+|..||........+...........+-..++..+..++..+. ....++|.-+
T Consensus 204 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~p~~Rp~~~ 256 (266)
T cd06651 204 TEKPPWAEYEAMAAIFKIATQPTNPQLPSHISEHARDFLGCIF-VEARHRPSAE 256 (266)
T ss_pred HCCCCccccchHHHHHHHhcCCCCCCCchhcCHHHHHHHHHhc-CChhhCcCHH
Confidence 5778888776555555433222222333344556666665444 3677777643
No 149
>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.
Probab=62.04 E-value=27 Score=22.14 Aligned_cols=55 Identities=5% Similarity=0.001 Sum_probs=33.3
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYL 57 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l 57 (86)
+|.+||......+.+.+... .....+....|.++.+++..+-..+..++|.-+.+
T Consensus 197 ~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l 251 (257)
T cd08225 197 TLKHPFEGNNLHQLVLKICQ-GYFAPISPNFSRDLRSLISQLFKVSPRDRPSITSI 251 (257)
T ss_pred hCCCCCCCccHHHHHHHHhc-ccCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHH
Confidence 57788876654444443322 22233445566778888777777777777764443
No 150
>PHA03258 Capsid triplex subunit 2; Provisional
Probab=61.61 E-value=9.6 Score=26.69 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=25.2
Q ss_pred CCCCChHHHHHHHHHHHHH--------------------cCCCCCC--ccccCCCccc
Q psy9733 49 EEAPDYMYLRQLFRILFRT--------------------LNHQYDY--LYHNNSSSLL 84 (86)
Q Consensus 49 ~~~PdY~~l~~~l~~~~~~--------------------~~~~~~~--~~DW~~~~~~ 84 (86)
...|||-.++..+++++-. ..+++.+ +|+|++...+
T Consensus 54 ~~~pDyl~l~~~lr~~tlaIl~~V~p~~lil~~l~~~~~y~IkNTg~P~F~w~nGD~L 111 (304)
T PHA03258 54 ETVPDYVAMYNYLSKCTLAILEEVNPDSLVLTRIDPGQTYQIKNKYQPFFQWDSHTQL 111 (304)
T ss_pred CCCccHHHHHHHHHHHHHHHHhhhcCCeEEEEecCCCceEEEEecCCCceeccCCCEE
Confidence 4779998888887776543 1245566 5999987654
No 151
>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4
Probab=61.35 E-value=34 Score=21.76 Aligned_cols=56 Identities=13% Similarity=0.025 Sum_probs=31.5
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCc--CCChHHHHHHHHHHHhCCCCCCCCChHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWH--NPSFPAEFAMYLNYCRGLRFEEAPDYMYL 57 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l--~~~~P~ef~~~~~~i~~L~y~~~PdY~~l 57 (86)
+|..||....+...+...........+ ...++..+.+++..+-+....++|...-+
T Consensus 201 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~i 258 (264)
T cd06626 201 TGKRPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDRCLESDPKKRPTASEL 258 (264)
T ss_pred hCCCCccCCcchHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHccCCcccCCCHHHH
Confidence 578888776544333322222111111 22346677777777777777788876543
No 152
>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do
Probab=59.63 E-value=22 Score=22.70 Aligned_cols=53 Identities=6% Similarity=-0.209 Sum_probs=34.5
Q ss_pred cccccCCCCccHHHHHHHhHcC--CccCcCCChHHHHHHHHHHHhCCCCCCCCCh
Q psy9733 2 EADLTWVREEQIVARGRLVMVA--PSYWHNPSFPAEFAMYLNYCRGLRFEEAPDY 54 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~--~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY 54 (86)
+|.+||........+....... ....+...+|.++.+++.-+-+...+++|.=
T Consensus 188 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~ 242 (260)
T cd05611 188 FGYPPFHAETPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGA 242 (260)
T ss_pred HCCCCCCCCCHHHHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccCC
Confidence 5889998765443333322211 1233445778899999999988888888843
No 153
>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h
Probab=58.97 E-value=45 Score=21.27 Aligned_cols=58 Identities=9% Similarity=0.063 Sum_probs=38.7
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLF 61 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l 61 (86)
|..||......+.+...+...... .-...|.++..++.-+-.-...++|..+.+.+.|
T Consensus 198 g~~p~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l 255 (256)
T cd05114 198 GKMPFEKKSNYEVVEMISRGFRLY-RPKLASMTVYEVMYSCWHEKPEGRPTFAELLRAI 255 (256)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence 788998876655555554432211 1123466788888888888888999888877654
No 154
>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,
Probab=58.71 E-value=15 Score=24.15 Aligned_cols=53 Identities=8% Similarity=-0.112 Sum_probs=32.9
Q ss_pred cccccCCCCccHHHHHHHhHcC--CccCcCCChHHHHHHHHHHHhCCCCCCCCCh
Q psy9733 2 EADLTWVREEQIVARGRLVMVA--PSYWHNPSFPAEFAMYLNYCRGLRFEEAPDY 54 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~--~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY 54 (86)
+|.+||............+..+ ....+....|..+..++..+-...-.++|..
T Consensus 196 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~ 250 (285)
T cd05605 196 EGKSPFRQRKEKVKREEVERRVKEDQEEYSEKFSEAARSICRQLLTKDPGFRLGC 250 (285)
T ss_pred HCCCCCCCCchhhHHHHHHHHhhhcccccCcccCHHHHHHHHHHccCCHHHhcCC
Confidence 6899998765433222222222 1223445577788888888888888888843
No 155
>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt
Probab=58.34 E-value=42 Score=21.90 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q psy9733 33 PAEFAMYLNYCRGLRFEEAPDYMYLRQLF 61 (86)
Q Consensus 33 P~ef~~~~~~i~~L~y~~~PdY~~l~~~l 61 (86)
+..+.+++..+-.....++|+...+.+.|
T Consensus 245 ~~~~~~li~~cl~~~p~~Rps~~~il~~L 273 (274)
T cd05076 245 CKELATLISQCLTYEPTQRPSFRTILRDL 273 (274)
T ss_pred ChHHHHHHHHHcccChhhCcCHHHHHHhh
Confidence 35688888888888888999887766544
No 156
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=58.11 E-value=32 Score=22.72 Aligned_cols=58 Identities=12% Similarity=0.067 Sum_probs=37.8
Q ss_pred cccccCCCCccHHHHHHHhHcCCcc-CcCCChHHHHHHHHHHHhCCCCCCCCChHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSY-WHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQ 59 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~-~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~ 59 (86)
.|..||........+...+...... ......+..+..++..+-.....++|....+..
T Consensus 213 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~ 271 (292)
T cd06658 213 DGEPPYFNEPPLQAMRRIRDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQRATAQELLQ 271 (292)
T ss_pred hCCCCCCCCCHHHHHHHHHhcCCCccccccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 5889998766555544444433221 112345678888888888889999998765543
No 157
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=57.41 E-value=35 Score=23.26 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=35.8
Q ss_pred cccccCCCCcc--HHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQ--IVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~--~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
.|.+||..... ...+...............++.++.+++..+-.....++|....+.
T Consensus 268 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell 326 (353)
T PLN00034 268 LGRFPFGVGRQGDWASLMCAICMSQPPEAPATASREFRHFISCCLQREPAKRWSAMQLL 326 (353)
T ss_pred hCCCCCCCCCCccHHHHHHHHhccCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 68899975432 2222111111122334456788999999999999999999866543
No 158
>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=56.68 E-value=8 Score=24.93 Aligned_cols=58 Identities=9% Similarity=-0.032 Sum_probs=34.5
Q ss_pred cccccCCCCccHHHHHHHhH-cCCcc--CcCCChHHHHHHHHHHHhCCCCCCCCChHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVM-VAPSY--WHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQ 59 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~-~~~~~--~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~ 59 (86)
+|..||........+..+.. ..... ......+.++.+++..+-+...+.+|..+.+.+
T Consensus 204 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~ 264 (267)
T cd06646 204 ELQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLLT 264 (267)
T ss_pred hCCCCccccchhhhheeeecCCCCCCCCccccccCHHHHHHHHHHhhCChhhCcCHHHHhc
Confidence 57788876543333222211 11111 123356678888888888888889998776643
No 159
>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1. Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.
Probab=56.50 E-value=24 Score=22.49 Aligned_cols=53 Identities=4% Similarity=-0.162 Sum_probs=33.7
Q ss_pred cccccCCCCcc--HHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChH
Q psy9733 2 EADLTWVREEQ--IVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYM 55 (86)
Q Consensus 2 ~G~LPW~~~~~--~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~ 55 (86)
.|..||..... ...+.+.... ....+....|..+.+++..+-+....++|.=.
T Consensus 194 ~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~ 248 (258)
T cd05578 194 RGKRPYRGHSRTIRDQIRAKQET-ADVLYPATWSTEAIDAINKLLERDPQKRLGDN 248 (258)
T ss_pred hCCCCCCCCCccHHHHHHHHhcc-ccccCcccCcHHHHHHHHHHccCChhHcCCcc
Confidence 58899988753 3333222211 33344456778888888888888888777654
No 160
>COG3092 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.63 E-value=16 Score=22.54 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCC-----CCCCCChHHHHHHHHHHHHHcC
Q psy9733 35 EFAMYLNYCRGLR-----FEEAPDYMYLRQLFRILFRTLN 69 (86)
Q Consensus 35 ef~~~~~~i~~L~-----y~~~PdY~~l~~~l~~~~~~~~ 69 (86)
-|.++..-+...+ -+++|+|..+-+.|++++++..
T Consensus 103 Wfyev~~kl~e~g~al~pv~~kP~Yq~LAdvLkrAf~qLd 142 (149)
T COG3092 103 WFYEVREKLKEAGQALAPVEEKPTYQALADVLKRAFKQLD 142 (149)
T ss_pred HHHHHHHHHHHhCCCCCcCCCCCcHHHHHHHHHHHHHHHH
Confidence 4555555555554 4789999999999999998753
No 161
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=55.60 E-value=14 Score=21.42 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=27.3
Q ss_pred CcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q psy9733 27 WHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRI 63 (86)
Q Consensus 27 ~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~ 63 (86)
.+..++|+.|..+...|+........-++.+...|..
T Consensus 72 ~iL~~Lp~~y~~~~~~i~~~~~~~~~t~~el~~~L~~ 108 (119)
T PF14223_consen 72 KILRSLPPSYDTFVTAIRNSKDLPKMTLEELISRLLA 108 (119)
T ss_pred HHHhcCCchhHHHHHHHHhcCCCCcCCHHHHHHHHHH
Confidence 3457888888888888888766666677777776654
No 162
>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase. Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor
Probab=55.24 E-value=40 Score=22.63 Aligned_cols=55 Identities=9% Similarity=0.037 Sum_probs=30.5
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCc--CCChHHHHHHHHHHHhCCCCCCCCChHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWH--NPSFPAEFAMYLNYCRGLRFEEAPDYMYL 57 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l--~~~~P~ef~~~~~~i~~L~y~~~PdY~~l 57 (86)
.|..||........+...........+ ...++.++..++..+-. .-.++|.++.+
T Consensus 204 ~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~~l 260 (330)
T cd05601 204 YGRSPFHEGTSAKTYNNIMNFQRFLKFPEDPKVSSDFLDLIQSLLC-GQKERLGYEGL 260 (330)
T ss_pred cCCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-ChhhCCCHHHH
Confidence 688999876544333322111110111 12456778887777766 67777776654
No 163
>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti
Probab=53.16 E-value=42 Score=21.73 Aligned_cols=56 Identities=11% Similarity=0.152 Sum_probs=34.8
Q ss_pred cccccCCCCccHHHHHHHhHcCCcc-CcCCChHHHHHHHHHHHhCCCCCCCCChHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSY-WHNPSFPAEFAMYLNYCRGLRFEEAPDYMYL 57 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~-~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l 57 (86)
+|.+|+........+.......... ..-..++.++.+++..+-.....++|....+
T Consensus 203 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i 259 (280)
T cd06611 203 QMEPPHHELNPMRVLLKILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAEL 259 (280)
T ss_pred hCCCCcccCCHHHHHHHHhcCCCCCcCCcccCCHHHHHHHHHHhccChhhCcCHHHH
Confidence 5888887765444443333221111 1113567788888888888888888876544
No 164
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=52.88 E-value=46 Score=21.70 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=35.1
Q ss_pred cccccCCCCccHHHHHHHhHcCCcc-CcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSY-WHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~-~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|..|+........+...+...... ......+.++..++.-+-....+++|....+.
T Consensus 228 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il 285 (291)
T cd06639 228 DGDPPLFDMHPVKTLFKIPRNPPPTLLHPEKWCRSFNHFISQCLIKDFEARPSVTHLL 285 (291)
T ss_pred hCCCCCCCCcHHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHhhcChhhCcCHHHHh
Confidence 5788888776555555444332211 11123445788888888888888888866553
No 165
>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1. Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25
Probab=52.81 E-value=45 Score=21.60 Aligned_cols=57 Identities=7% Similarity=-0.034 Sum_probs=38.2
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQ 59 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~ 59 (86)
+|..||........+...... ....+...+|.++.+++..+-.....++|+-..+.+
T Consensus 196 tg~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 252 (277)
T cd06642 196 KGEPPNSDLHPMRVLFLIPKN-SPPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELLK 252 (277)
T ss_pred hCCCCCcccchhhHHhhhhcC-CCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence 588898765433332222222 223455667888999999998999999998776654
No 166
>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with
Probab=51.42 E-value=51 Score=20.81 Aligned_cols=55 Identities=4% Similarity=-0.026 Sum_probs=31.8
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYL 57 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l 57 (86)
+|..|+........+..... .....+...++.++.+++..+-+....++|+...+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l 250 (256)
T cd08220 196 SLKRAFEAANLPALVLKIMS-GTFAPISDRYSPDLRQLILSMLNLDPSKRPQLSQI 250 (256)
T ss_pred hCCCCcccCchHHHHHHHHh-cCCCCCCCCcCHHHHHHHHHHccCChhhCCCHHHH
Confidence 35566655443333332222 22234445667778888887777778888876654
No 167
>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio
Probab=50.70 E-value=42 Score=21.68 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=15.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCChH
Q psy9733 31 SFPAEFAMYLNYCRGLRFEEAPDYM 55 (86)
Q Consensus 31 ~~P~ef~~~~~~i~~L~y~~~PdY~ 55 (86)
+.|..+.+++..+-....+++|.-.
T Consensus 254 ~~~~~~~~li~~~l~~~p~~Rp~~~ 278 (286)
T cd07847 254 NISSPALSFLKGCLQMDPTERLSCE 278 (286)
T ss_pred cCCHHHHHHHHHHhcCCccccCCHH
Confidence 4455666666666666666776554
No 168
>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut
Probab=50.67 E-value=65 Score=20.68 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 30 PSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 30 ~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
..+|.++.+++..+-+....++|....+...|.++
T Consensus 249 ~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i 283 (284)
T cd05038 249 PSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL 283 (284)
T ss_pred ccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence 46788999999999999999999999998888764
No 169
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=50.66 E-value=14 Score=19.46 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHhCCC
Q psy9733 32 FPAEFAMYLNYCRGLR 47 (86)
Q Consensus 32 ~P~ef~~~~~~i~~L~ 47 (86)
-+.++..++.||++|+
T Consensus 76 s~~e~~~l~ayl~slk 91 (91)
T PF00034_consen 76 SDEEIADLAAYLRSLK 91 (91)
T ss_dssp SHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3579999999999985
No 170
>KOG4071|consensus
Probab=50.57 E-value=69 Score=20.93 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=36.6
Q ss_pred ccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 25 SYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 25 ~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
.++-+..+|..|-.+.+.+-+-.-++.||-+.++.++.++...
T Consensus 82 e~~tfs~lp~~~~ela~lL~n~a~Ddi~~~eeiR~lV~DI~d~ 124 (187)
T KOG4071|consen 82 ESETFSKLPFYYFELATLLLNFARDDIPDIEEIRTLVKDIRDI 124 (187)
T ss_pred cccccccCChHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence 3446788899999999999999999999999999999887643
No 171
>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi
Probab=50.31 E-value=22 Score=23.55 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=35.7
Q ss_pred cccccCCCCccHHHHHHHhHcCC-ccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAP-SYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~-~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|..||........+........ ....-..+|..+.++++.+-.....++|+.+.+.
T Consensus 210 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il 267 (293)
T cd06647 210 EGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELL 267 (293)
T ss_pred hCCCCCCCCChhhheeehhcCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 58889987654444333222111 1111234677889999988888999999876554
No 172
>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=49.85 E-value=55 Score=21.28 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHhCCCCCCCCChHHHHHH
Q psy9733 32 FPAEFAMYLNYCRGLRFEEAPDYMYLRQL 60 (86)
Q Consensus 32 ~P~ef~~~~~~i~~L~y~~~PdY~~l~~~ 60 (86)
+|.++.+++..+-....+++|.-+.+.+.
T Consensus 238 ~~~~~~~li~~~l~~dp~~Rpt~~e~~~~ 266 (284)
T cd06620 238 FPEDLRDFVDACLLKDPTERPTPQQLCAM 266 (284)
T ss_pred cCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence 77889999999989999999998776653
No 173
>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re
Probab=49.46 E-value=53 Score=21.03 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=7.0
Q ss_pred cccccCCCCccHH
Q psy9733 2 EADLTWVREEQIV 14 (86)
Q Consensus 2 ~G~LPW~~~~~~~ 14 (86)
+|..||.......
T Consensus 204 ~g~~p~~~~~~~~ 216 (265)
T cd06652 204 TEKPPWAEFEAMA 216 (265)
T ss_pred hCCCCCCccchHH
Confidence 4666666554333
No 174
>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i
Probab=48.94 E-value=20 Score=23.59 Aligned_cols=52 Identities=8% Similarity=-0.029 Sum_probs=32.5
Q ss_pred cccccCCCCccHHHHHHHhHc--CCccCcCCChHHHHHHHHHHHhCCCCCCCCC
Q psy9733 2 EADLTWVREEQIVARGRLVMV--APSYWHNPSFPAEFAMYLNYCRGLRFEEAPD 53 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~--~~~~~l~~~~P~ef~~~~~~i~~L~y~~~Pd 53 (86)
+|..||............... .....+...++.++..+++.+-+....++|.
T Consensus 196 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~ 249 (285)
T cd05631 196 QGQSPFRKRKERVKREEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKNPKERLG 249 (285)
T ss_pred hCCCCCCCCCcchhHHHHHHHhhcccccCCccCCHHHHHHHHHHhhcCHHHhcC
Confidence 689999876432222222111 1223444567788899988888888888875
No 175
>PRK01229 N-glycosylase/DNA lyase; Provisional
Probab=47.89 E-value=31 Score=22.75 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=30.6
Q ss_pred HHHHHHhCCCCCCC-------CChHHHHHHHHHHHHHcCCCCCCcccc
Q psy9733 38 MYLNYCRGLRFEEA-------PDYMYLRQLFRILFRTLNHQYDYLYHN 78 (86)
Q Consensus 38 ~~~~~i~~L~y~~~-------PdY~~l~~~l~~~~~~~~~~~~~~~DW 78 (86)
.+.+....|++.+. .+|..+...|++.+...|+.. +-+||
T Consensus 150 Hv~Ri~~RlG~~~~~~~~lt~~~y~~~E~~l~~~~~~~~~~~-~~Ldl 196 (208)
T PRK01229 150 HILRFLKRYGLIEEIPKTLSKKRYLEIEEILREIAEELGISL-GELDL 196 (208)
T ss_pred HHHHHHHHhCCCcccccccCcCCHHHHHHHHHHHHHHcCCCH-HHHHH
Confidence 45666778888775 689999999999999888764 44443
No 176
>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati
Probab=47.07 E-value=73 Score=20.20 Aligned_cols=55 Identities=4% Similarity=-0.107 Sum_probs=31.3
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYL 57 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l 57 (86)
+|..||........+..... .....+-..++..+..++.-+-.....++|....+
T Consensus 195 ~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~i 249 (255)
T cd08219 195 TLKHPFQANSWKNLILKVCQ-GSYKPLPSHYSYELRSLIKQMFKRNPRSRPSATTI 249 (255)
T ss_pred hccCCCCCCCHHHHHHHHhc-CCCCCCCcccCHHHHHHHHHHHhCCcccCCCHHHH
Confidence 57778876543333322222 22223334566677777777777777777776544
No 177
>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa
Probab=47.06 E-value=70 Score=20.26 Aligned_cols=54 Identities=9% Similarity=-0.065 Sum_probs=29.0
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMY 56 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~ 56 (86)
+|..||......+.+...... ........+|.++..++..+-.....++|.-..
T Consensus 196 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ 249 (256)
T cd08221 196 TLKRTFDATNPLNLVVKIVQG-NYTPVVSVYSSELISLVHSLLQQDPEKRPTADE 249 (256)
T ss_pred HCCCCCCCCCHHHHHHHHHcC-CCCCCccccCHHHHHHHHHHcccCcccCCCHHH
Confidence 466676654433333333221 112222556677777777777667777776443
No 178
>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely
Probab=46.94 E-value=52 Score=21.50 Aligned_cols=29 Identities=10% Similarity=-0.158 Sum_probs=21.7
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCCChHHH
Q psy9733 29 NPSFPAEFAMYLNYCRGLRFEEAPDYMYL 57 (86)
Q Consensus 29 ~~~~P~ef~~~~~~i~~L~y~~~PdY~~l 57 (86)
+..+|..+.+++.-+-.....++|....+
T Consensus 268 ~~~~~~~~~~li~~~l~~~P~~Rp~~~~i 296 (302)
T cd07864 268 FSFIPTPALDLLDHMLTLDPSKRCTAEEA 296 (302)
T ss_pred cCCCCHHHHHHHHHHccCChhhCCCHHHH
Confidence 34567888888888888888888876544
No 179
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=46.86 E-value=21 Score=22.67 Aligned_cols=57 Identities=11% Similarity=0.002 Sum_probs=34.8
Q ss_pred cccccCCCCccH--HHHHHHhHcCCcc-Cc--CCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQI--VARGRLVMVAPSY-WH--NPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~--~~i~~~K~~~~~~-~l--~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|..||...... ..+.......... .. ....+.++..++..+-+....++|....+.
T Consensus 194 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~ 255 (260)
T PF00069_consen 194 TGKLPFEESNSDDQLEIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSKDPEQRPSAEELL 255 (260)
T ss_dssp HSSSSSTTSSHHHHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHH
T ss_pred ccccccccccchhhhhhhhhcccccccccccccchhHHHHHHHHHHHccCChhHCcCHHHHh
Confidence 588999987322 2222222211111 11 122358999999999999999999976653
No 180
>PF05073 Baculo_p24: Baculovirus P24 capsid protein; InterPro: IPR007765 The Culex nigripalpus NPV (Culex nigripalpus nucleopolyhedrovirus) protein p24 is associated with nucleocapsids of budded and polyhedra-derived virions [, ].; GO: 0019028 viral capsid
Probab=46.57 E-value=30 Score=22.43 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=25.8
Q ss_pred HHHHHHHhCCCCCCC---CChHHHHHHHHHHHH
Q psy9733 37 AMYLNYCRGLRFEEA---PDYMYLRQLFRILFR 66 (86)
Q Consensus 37 ~~~~~~i~~L~y~~~---PdY~~l~~~l~~~~~ 66 (86)
-.+.+|+.+..-.+. |.|-.|++++++++.
T Consensus 68 f~l~KYLs~y~ls~~~~p~~Y~~LKqLi~DLl~ 100 (182)
T PF05073_consen 68 FALCKYLSSYNLSDSKHPPEYYTLKQLIRDLLV 100 (182)
T ss_pred HHHHHHHHhCCCcccCCchHHHHHHHHHHHHhc
Confidence 346788888888888 999999999999985
No 181
>smart00455 RBD Raf-like Ras-binding domain.
Probab=46.41 E-value=33 Score=18.49 Aligned_cols=29 Identities=7% Similarity=-0.078 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCCC----------CCccccCCCccc
Q psy9733 56 YLRQLFRILFRTLNHQY----------DYLYHNNSSSLL 84 (86)
Q Consensus 56 ~l~~~l~~~~~~~~~~~----------~~~~DW~~~~~~ 84 (86)
-+++.|..++++.|+.. +.+.||+.....
T Consensus 21 tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~~~~~~ 59 (70)
T smart00455 21 TVRDALAKALKKRGLNPECCVVRLRGEKKPLDLNQPISS 59 (70)
T ss_pred CHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecCCcccc
Confidence 36788888888888654 467888866543
No 182
>PHA02119 hypothetical protein
Probab=46.29 E-value=13 Score=20.47 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=13.5
Q ss_pred HHHHHHHhCCCCCCCCC
Q psy9733 37 AMYLNYCRGLRFEEAPD 53 (86)
Q Consensus 37 ~~~~~~i~~L~y~~~Pd 53 (86)
.+|..|+++|+|+-+-|
T Consensus 57 ~divdylr~lgy~~~~~ 73 (87)
T PHA02119 57 KDIVDYLRSLGYDAKSD 73 (87)
T ss_pred HHHHHHHHHccchhccc
Confidence 47888999999986544
No 183
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=44.55 E-value=79 Score=20.90 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=36.3
Q ss_pred cccccCCCCccHHHHHHHhHc-CCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMV-APSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~-~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|..||........+...... ...-.....+|..+.+++..+-.....++|....+.
T Consensus 210 tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il 267 (296)
T cd06655 210 EGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELL 267 (296)
T ss_pred hCCCCCCCCCHHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHhhcChhhCCCHHHHh
Confidence 578888876554443332221 112223356778899999888888999999876544
No 184
>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the
Probab=44.52 E-value=40 Score=21.21 Aligned_cols=51 Identities=4% Similarity=-0.087 Sum_probs=27.3
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCCh
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDY 54 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY 54 (86)
.|..||.............. ....+-..+|.++.+++..+-....+++|.=
T Consensus 188 ~g~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~ 238 (250)
T cd05123 188 TGKPPFYAEDRKEIYEKILK--DPLRFPEFLSPEARDLISGLLQKDPTKRLGS 238 (250)
T ss_pred HCCCCCCCCCHHHHHHHHhc--CCCCCCCCCCHHHHHHHHHHhcCCHhhCCCc
Confidence 47777766543222222211 1123334456777777777776666666654
No 185
>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g
Probab=44.37 E-value=32 Score=22.50 Aligned_cols=53 Identities=11% Similarity=-0.024 Sum_probs=33.4
Q ss_pred cccccCCCCccHHHHHHHhHcC--CccCcCCChHHHHHHHHHHHhCCCCCCCCCh
Q psy9733 2 EADLTWVREEQIVARGRLVMVA--PSYWHNPSFPAEFAMYLNYCRGLRFEEAPDY 54 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~--~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY 54 (86)
+|..||............+... ....+...+|.++..++..+-.....++|..
T Consensus 192 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~ 246 (280)
T cd05608 192 AARGPFRARGEKVENKELKQRILNDSVTYPDKFSPASKSFCEALLAKDPEKRLGF 246 (280)
T ss_pred hCCCCCCCCCcchhHHHHHHhhcccCCCCcccCCHHHHHHHHHHhcCCHHHhcCC
Confidence 6889998754322222222222 1223345678889999999888888888855
No 186
>PF14227 UBN2_2: gag-polypeptide of LTR copia-type
Probab=44.04 E-value=39 Score=19.48 Aligned_cols=37 Identities=8% Similarity=0.025 Sum_probs=28.5
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 28 HNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 28 l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
+..++|+.|..+...+..-.-.+.++.+.+...|...
T Consensus 71 lL~sLP~sy~~~~~~l~~~~~~~~~tl~~v~~~L~~e 107 (119)
T PF14227_consen 71 LLSSLPPSYDSFVTALLYSKPEDELTLEEVKSKLLQE 107 (119)
T ss_pred HHHcCCHhHHHHHHHHHccCCCCCcCHHHHHHHHHHH
Confidence 4578999988888776665556789999888888763
No 187
>PF12590 Acyl-thio_N: Acyl-ATP thioesterase; InterPro: IPR021113 This entry represents the N-terminal domain of acyl-ATP thioesterases from bacteria and eukaryotes. These proteins are typically between 120 and 131 amino acids in length. The plant acyl-acyl carrier protein (ACP) thioesterases (TEs) play an essential role in chain termination during de novo fatty acid synthesis [].; GO: 0016790 thiolester hydrolase activity
Probab=43.82 E-value=28 Score=21.33 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=26.4
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCCCCccccCCCc
Q psy9733 48 FEEAPDYMYLRQLFRILFRTLNHQYDYLYHNNSSS 82 (86)
Q Consensus 48 y~~~PdY~~l~~~l~~~~~~~~~~~~~~~DW~~~~ 82 (86)
|++-||...|...+..+|-...-+. ..+||-.+.
T Consensus 90 iNQLPDWSMLLAAITTIFlAAEKQW-~mLDwKpkR 123 (129)
T PF12590_consen 90 INQLPDWSMLLAAITTIFLAAEKQW-TMLDWKPKR 123 (129)
T ss_pred hhhCccHHHHHHHHHHHHHHhhhhh-hhhcccCCC
Confidence 5677999999999999997665444 678887643
No 188
>PF11473 B2: RNA binding protein B2; InterPro: IPR024377 Protein B2 binds double-strand RNA (dsRNA) with high affinity and suppresses the host RNA silencing-based antiviral response. B2 is expressed by the insect Flock House virus (FHV) as a counter-defense mechanism against antiviral RNA silencing during infection. In vitro, B2 binds to dsRNA as a dimer and inhibits the cleavage of it by Dicer. B2 blocks cleavage of the FHV genome by Dicer and also the incorporation of FHV small interfering RNAs into the RNA-induced silencing complex [].; PDB: 2AZ2_A 2B9Z_A 2AZ0_A.
Probab=43.75 E-value=29 Score=18.92 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=26.1
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHHHHH
Q psy9733 28 HNPSFPAEFAMYLNYCRGLRFEEAP-----DYMYLRQLFRIL 64 (86)
Q Consensus 28 l~~~~P~ef~~~~~~i~~L~y~~~P-----dY~~l~~~l~~~ 64 (86)
|-+.+|..+....+-+.++.|.+.| |-+.++.+|.++
T Consensus 7 LiQ~lp~~iq~aV~~~~~~~~~~~p~~V~kDLdn~kaCL~K~ 48 (73)
T PF11473_consen 7 LIQELPDRIQQAVEAAIDMSYQCAPNNVRKDLDNYKACLNKA 48 (73)
T ss_dssp HHHCHHHHHHHHHHHHHCS-GTTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcccCchHHHHHHHHHHHHHHHH
Confidence 4467899999999999999999999 445555555443
No 189
>PHA02956 hypothetical protein; Provisional
Probab=43.47 E-value=24 Score=22.14 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=23.6
Q ss_pred CCChHHHH---HHHHHHHHHcCCCCCCccccCC
Q psy9733 51 APDYMYLR---QLFRILFRTLNHQYDYLYHNNS 80 (86)
Q Consensus 51 ~PdY~~l~---~~l~~~~~~~~~~~~~~~DW~~ 80 (86)
-|||+.++ +-|.+++...|...-..|-|..
T Consensus 33 l~dy~li~~m~kkfnklf~~k~l~i~a~y~w~~ 65 (189)
T PHA02956 33 LPDYALIRFMIKKFNKLFIAKGLNIFAKYSWIN 65 (189)
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCeEEEEeeeh
Confidence 58997665 5577888888888888899975
No 190
>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check
Probab=42.13 E-value=90 Score=19.84 Aligned_cols=55 Identities=7% Similarity=0.013 Sum_probs=30.1
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYL 57 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l 57 (86)
+|..|+........+.... ......+-..+|.++.+++..+-......+|+..-+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i 254 (260)
T cd08222 200 CLAHAFEGQNFLSVVLRIV-EGPTPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEI 254 (260)
T ss_pred hCCCCCCCccHHHHHHHHH-cCCCCCCcchhcHHHHHHHHHHhcCChhhCcCHHHH
Confidence 4566665443322222221 112223335667777777777777777788776544
No 191
>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a
Probab=41.97 E-value=64 Score=21.31 Aligned_cols=62 Identities=6% Similarity=-0.121 Sum_probs=38.1
Q ss_pred cccccCCCCccHHHHHHHhHcC-CccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVA-PSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRI 63 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~-~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~ 63 (86)
+|.+|+.+....+.....+... .....-..+|.++.+++..+-+....++|.=..+.+++..
T Consensus 211 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~ 273 (305)
T cd05609 211 VGCVPFFGDTPEELFGQVISDDIEWPEGDEALPADAQDLISRLLRQNPLERLGTGGAFEVKQH 273 (305)
T ss_pred hCCCCCCCCCHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence 5888987654433332222221 1111112578899999999999999999986555555443
No 192
>PF11567 PfUIS3: Plasmodium falciparum UIS3 membrane protein; InterPro: IPR021626 UIS3 is a membrane protein essential for sporozoite development in infected hepatocytes. This family is 130-229 of the Plasmodium falciparum UIS3 protein which is compact and has an all alpha-helical structure.PfUIS3(130-229) interacts with lipids, phospholipid lysosomes, the human liver fatty acid-binding protein and with the lipid phosphatidylethanolamine. The interaction with liver fatty acid-binding protein provides the parasite with a method to import essential fatty acids/lipids during rapid growth phases of sporozoites []. ; PDB: 2VWA_C.
Probab=41.45 E-value=36 Score=19.62 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=15.2
Q ss_pred CCChHHHHHHHHHHHHHcCCCC
Q psy9733 51 APDYMYLRQLFRILFRTLNHQY 72 (86)
Q Consensus 51 ~PdY~~l~~~l~~~~~~~~~~~ 72 (86)
.-||+|++++...+=.+.++..
T Consensus 51 ind~dY~rkiVQ~L~E~rnv~l 72 (101)
T PF11567_consen 51 INDYDYIRKIVQTLDENRNVNL 72 (101)
T ss_dssp TT-HHHHHHHHHHHHHHTT---
T ss_pred hchHHHHHHHHHHHHhcccccH
Confidence 3589999999998887777654
No 193
>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=41.04 E-value=1e+02 Score=20.11 Aligned_cols=58 Identities=10% Similarity=0.129 Sum_probs=35.0
Q ss_pred cccccCCCCc----cHHHHHHHhHcCCccCcC------CChHHHHHHHHHHHhCCCCCCCCChHHHHH
Q psy9733 2 EADLTWVREE----QIVARGRLVMVAPSYWHN------PSFPAEFAMYLNYCRGLRFEEAPDYMYLRQ 59 (86)
Q Consensus 2 ~G~LPW~~~~----~~~~i~~~K~~~~~~~l~------~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~ 59 (86)
+|.+||.... ...++...........+- ...+.++.+++..+-...-.++|...-+..
T Consensus 198 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~ 265 (287)
T cd06621 198 QNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLE 265 (287)
T ss_pred hCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCCCchHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence 5889998762 222222222222211111 235678999999999999999999765443
No 194
>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr
Probab=40.97 E-value=46 Score=21.73 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=32.0
Q ss_pred cccccCCCCccHHHHHHHhHcC---CccCcCCChHHHHHHHHHHHhCCCCCCCCCh
Q psy9733 2 EADLTWVREEQIVARGRLVMVA---PSYWHNPSFPAEFAMYLNYCRGLRFEEAPDY 54 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~---~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY 54 (86)
+|..||................ .......+++.++.+++..+-+....++|.-
T Consensus 189 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~ 244 (277)
T cd05607 189 AGRTPFKDHKEKVAKEELKRRTLEDEVKFEHQNFTEESKDICRLFLAKKPEDRLGS 244 (277)
T ss_pred hCCCCCCCCcchhhHHHHHHHhhccccccccccCCHHHHHHHHHHhccCHhhCCCC
Confidence 6889998753221111111111 1122234678889999999988888888876
No 195
>KOG0983|consensus
Probab=40.71 E-value=1.1e+02 Score=21.96 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=36.5
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCc--CCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWH--NPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l--~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|.-|..+.+-.-++...-.+--+.-| -.+.-..|.+|+.-+-+-...++|+|..|-
T Consensus 289 Tg~yPy~~c~tdFe~ltkvln~ePP~L~~~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll 347 (391)
T KOG0983|consen 289 TGQYPYKGCKTDFEVLTKVLNEEPPLLPGHMGFSPDFQSFVKDCLTKDHRKRPKYNKLL 347 (391)
T ss_pred cccCCCCCCCccHHHHHHHHhcCCCCCCcccCcCHHHHHHHHHHhhcCcccCcchHHHh
Confidence 677888886533333322222111112 133456899999999999999999998874
No 196
>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti
Probab=39.87 E-value=97 Score=19.58 Aligned_cols=54 Identities=2% Similarity=-0.124 Sum_probs=26.9
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMY 56 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~ 56 (86)
+|..|+......+.+.+.... ........++.++..++..+-+....++|.-+.
T Consensus 196 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ 249 (256)
T cd08218 196 TLKHAFEAGNMKNLVLKIIRG-SYPPVSSHYSYDLRNLVSQLFKRNPRDRPSVNS 249 (256)
T ss_pred cCCCCccCCCHHHHHHHHhcC-CCCCCcccCCHHHHHHHHHHhhCChhhCcCHHH
Confidence 466666554433333332221 222233455666666666666666666665443
No 197
>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as
Probab=39.18 E-value=40 Score=22.15 Aligned_cols=53 Identities=6% Similarity=-0.007 Sum_probs=31.1
Q ss_pred CcccccCCCCccHHHHHHHhHc--CCccCcCCChHHHHHHHHHHHhCCCCCCCCC
Q psy9733 1 MEADLTWVREEQIVARGRLVMV--APSYWHNPSFPAEFAMYLNYCRGLRFEEAPD 53 (86)
Q Consensus 1 ~~G~LPW~~~~~~~~i~~~K~~--~~~~~l~~~~P~ef~~~~~~i~~L~y~~~Pd 53 (86)
++|.+||....+.......+.. .....+...++.++.+++..+-.....++|.
T Consensus 195 ~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s 249 (285)
T cd05630 195 IAGQSPFQQRKKKIKREEVERLVKEVQEEYSEKFSPDARSLCKMLLCKDPKERLG 249 (285)
T ss_pred HhCCCCCCCCCccchHHHHHhhhhhhhhhcCccCCHHHHHHHHHHhhcCHHHccC
Confidence 3689999875432111111110 0112233556778888888888888888886
No 198
>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in
Probab=38.96 E-value=90 Score=20.97 Aligned_cols=50 Identities=8% Similarity=-0.024 Sum_probs=31.2
Q ss_pred CcccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCC
Q psy9733 1 MEADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAP 52 (86)
Q Consensus 1 ~~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~P 52 (86)
++|..||........+...... ...+-..++.++.+++..+-.....++|
T Consensus 194 l~G~~pf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~R~ 243 (323)
T cd05584 194 LTGAPPFTAENRKKTIDKILKG--KLNLPPYLTPEARDLLKKLLKRNPSSRL 243 (323)
T ss_pred hcCCCCCCCCCHHHHHHHHHcC--CCCCCCCCCHHHHHHHHHHcccCHhHcC
Confidence 3689999887654443333221 1123345567788888888777777777
No 199
>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl
Probab=38.87 E-value=44 Score=22.30 Aligned_cols=59 Identities=7% Similarity=-0.061 Sum_probs=36.9
Q ss_pred CcccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q psy9733 1 MEADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLF 61 (86)
Q Consensus 1 ~~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l 61 (86)
++|..||......+..... .. ....+-..++.++.+++.-+-+....++|.+....+++
T Consensus 187 ~tg~~pf~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l 245 (312)
T cd05585 187 LTGLPPFYDENVNEMYRKI-LQ-EPLRFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIK 245 (312)
T ss_pred HhCCCCcCCCCHHHHHHHH-Hc-CCCCCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHH
Confidence 3689999876443322221 11 12233356778889999888888888888775555544
No 200
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=38.85 E-value=18 Score=18.10 Aligned_cols=13 Identities=15% Similarity=0.664 Sum_probs=9.9
Q ss_pred CCCCChHHHHHHH
Q psy9733 49 EEAPDYMYLRQLF 61 (86)
Q Consensus 49 ~~~PdY~~l~~~l 61 (86)
.+.|+|.++.+.|
T Consensus 33 ~~d~~Y~~y~~~l 45 (46)
T PF10764_consen 33 TDDPKYEFYKKQL 45 (46)
T ss_pred CCCCCHHHHHHhc
Confidence 4678999887765
No 201
>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the
Probab=38.63 E-value=93 Score=20.92 Aligned_cols=51 Identities=6% Similarity=-0.085 Sum_probs=28.6
Q ss_pred CcccccCCCCccHHHHHHHh---HcCCccCcCCChHHHHHHHHHHHhCCCCCCCCC
Q psy9733 1 MEADLTWVREEQIVARGRLV---MVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPD 53 (86)
Q Consensus 1 ~~G~LPW~~~~~~~~i~~~K---~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~Pd 53 (86)
++|..||............. ....... ...+|.++..++..+-. ...++|.
T Consensus 224 l~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~-~~~~~~~~~~li~~ll~-dp~~R~~ 277 (350)
T cd05573 224 LYGFPPFYSDTLQETYNKIINWKESLRFPP-DPPVSPEAIDLICRLLC-DPEDRLG 277 (350)
T ss_pred ccCCCCCCCCCHHHHHHHHhccCCcccCCC-CCCCCHHHHHHHHHHcc-ChhhcCC
Confidence 36899998876443332222 2221111 12367788888877765 5666665
No 202
>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin
Probab=38.43 E-value=65 Score=21.33 Aligned_cols=55 Identities=2% Similarity=-0.100 Sum_probs=33.4
Q ss_pred CcccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChH
Q psy9733 1 MEADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYM 55 (86)
Q Consensus 1 ~~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~ 55 (86)
++|..||..................-......|.++.+++..+-.....++|--.
T Consensus 226 ~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~ 280 (316)
T cd05574 226 LYGTTPFKGSNRDETFSNILKKEVTFPGSPPVSSSARDLIRKLLVKDPSKRLGSK 280 (316)
T ss_pred hhCCCCCCCCchHHHHHHHhcCCccCCCccccCHHHHHHHHHHccCCHhHCCCch
Confidence 3688899776544433333221111111223678899999888888888888643
No 203
>COG4570 Rus Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=38.33 E-value=48 Score=20.46 Aligned_cols=32 Identities=13% Similarity=-0.052 Sum_probs=25.5
Q ss_pred CCCCCChHHHHHHHHHHHHHcCC-CCCCccccC
Q psy9733 48 FEEAPDYMYLRQLFRILFRTLNH-QYDYLYHNN 79 (86)
Q Consensus 48 y~~~PdY~~l~~~l~~~~~~~~~-~~~~~~DW~ 79 (86)
-..+||=+.+.+.+.++|...|+ +.|..+.|.
T Consensus 78 kttrpDlDNl~K~l~Daltk~g~~~DD~Qive~ 110 (132)
T COG4570 78 KTTRPDLDNLLKALLDALTKAGVWKDDAQIVEI 110 (132)
T ss_pred cccCccHHHHHHHHHHHHhhcceecccceeEEE
Confidence 34589999999999999998876 556666654
No 204
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=38.05 E-value=58 Score=21.15 Aligned_cols=56 Identities=5% Similarity=-0.021 Sum_probs=33.2
Q ss_pred cccccCCCCccHH-HHHHHhHcC-CccCcCCChHHHHHHHHHHHhCCCCCCCC-ChHHH
Q psy9733 2 EADLTWVREEQIV-ARGRLVMVA-PSYWHNPSFPAEFAMYLNYCRGLRFEEAP-DYMYL 57 (86)
Q Consensus 2 ~G~LPW~~~~~~~-~i~~~K~~~-~~~~l~~~~P~ef~~~~~~i~~L~y~~~P-dY~~l 57 (86)
+|..||....... .....+... ........++..+..++..+-......+| +++.+
T Consensus 201 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~ 259 (267)
T PHA03390 201 TGKHPFKEDEDEELDLESLLKRQQKKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEI 259 (267)
T ss_pred HCCCCCCCCCcchhhHHHHHHhhcccCCcccccCHHHHHHHHHHhccChhhCCchHHHH
Confidence 5889998653221 112222211 22234456778889999888888888887 44433
No 205
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=37.79 E-value=1.2e+02 Score=20.03 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=36.3
Q ss_pred cccccCCCCccHHHHHHHhHcCC-ccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAP-SYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQ 59 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~-~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~ 59 (86)
+|..||........+........ ........+..+..++..+-.....++|....+.+
T Consensus 212 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~ 270 (297)
T cd06659 212 DGEPPYFSDSPVQAMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATAQELLD 270 (297)
T ss_pred hCCCCCCCCCHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHhcCCcccCcCHHHHhh
Confidence 58889877654444433332211 11223456778888888888888889998665544
No 206
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=37.62 E-value=45 Score=21.26 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcC
Q psy9733 35 EFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLN 69 (86)
Q Consensus 35 ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~ 69 (86)
-..-+++||++|.....|-=..+..++-+++.+.|
T Consensus 9 li~vllEYirSl~~~~i~~~~~L~~lli~lLi~~~ 43 (167)
T PF07035_consen 9 LIAVLLEYIRSLNQHNIPVQHELYELLIDLLIRNG 43 (167)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 34558999999977777766678888888877765
No 207
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=37.28 E-value=78 Score=25.98 Aligned_cols=56 Identities=7% Similarity=-0.009 Sum_probs=39.6
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|..||........+...... .+.....+.|.++..++..+-.....++|....+.
T Consensus 238 TGk~PF~~~~~~~qli~~lk~-~p~lpi~~~S~eL~dLI~~~L~~dPeeRPSa~QlL 293 (1021)
T PTZ00266 238 SGKTPFHKANNFSQLISELKR-GPDLPIKGKSKELNILIKNLLNLSAKERPSALQCL 293 (1021)
T ss_pred HCCCCCCcCCcHHHHHHHHhc-CCCCCcCCCCHHHHHHHHHHhcCChhHCcCHHHHh
Confidence 688999877655444332222 12223356788999999999999999999987765
No 208
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=36.58 E-value=47 Score=18.29 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=20.0
Q ss_pred cCCChHHHHHHHHHHHhC-CCCCCCCChHHHHHHHH
Q psy9733 28 HNPSFPAEFAMYLNYCRG-LRFEEAPDYMYLRQLFR 62 (86)
Q Consensus 28 l~~~~P~ef~~~~~~i~~-L~y~~~PdY~~l~~~l~ 62 (86)
+...-|..|..|++|++. ..... |+...+..+++
T Consensus 45 fiDRdp~~F~~IL~ylr~~~~l~~-~~~~~~~~l~~ 79 (94)
T PF02214_consen 45 FIDRDPELFEYILNYLRTGGKLPI-PDEICLEELLE 79 (94)
T ss_dssp EESS-HHHHHHHHHHHHHTSSB----TTS-HHHHHH
T ss_pred EeccChhhhhHHHHHHhhcCccCC-CCchhHHHHHH
Confidence 446679999999999998 55554 33333444433
No 209
>PF14426 Imm2: Immunity protein Imm2
Probab=36.40 E-value=27 Score=18.50 Aligned_cols=35 Identities=17% Similarity=0.004 Sum_probs=24.7
Q ss_pred HHHHHHHhHcCCccCcCCChHH-HHHHHHHHHhCCC
Q psy9733 13 IVARGRLVMVAPSYWHNPSFPA-EFAMYLNYCRGLR 47 (86)
Q Consensus 13 ~~~i~~~K~~~~~~~l~~~~P~-ef~~~~~~i~~L~ 47 (86)
...|...+.+.+...++++.|. |...+..-.+-|+
T Consensus 23 ~~~I~~~l~~~~l~~Ll~~ip~eEae~l~~D~rvLk 58 (60)
T PF14426_consen 23 RNWIHKLLSEIPLNNLLDDIPSEEAEELRHDMRVLK 58 (60)
T ss_pred HHHHHHHHHhCCHHHHHhhCCHHHHHHHHHHHHHHh
Confidence 3567777778889999999996 5555555555444
No 210
>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1. Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto
Probab=35.97 E-value=96 Score=19.78 Aligned_cols=51 Identities=10% Similarity=0.148 Sum_probs=26.9
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCCh
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDY 54 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY 54 (86)
+|..||.............. ....+....|..+..++.-+-+....++|.-
T Consensus 217 ~g~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~ 267 (280)
T cd05581 217 TGKPPFRGSNEYLTFQKILK--LEYSFPPNFPPDAKDLIEKLLVLDPQDRLGV 267 (280)
T ss_pred hCCCCCCCccHHHHHHHHHh--cCCCCCCccCHHHHHHHHHHhcCCHhhCCCc
Confidence 46677776543222222211 1122334456677777777666666666665
No 211
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=35.52 E-value=77 Score=17.16 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCCC
Q psy9733 33 PAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQ 71 (86)
Q Consensus 33 P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~~~ 71 (86)
|..+.++++.+.+= +|..++..+.+++.. |++
T Consensus 5 ~~~i~~i~~~~~~~------~~~~~~~~~~~l~~~-G~s 36 (89)
T PF08542_consen 5 PEVIEEILESCLNG------DFKEARKKLYELLVE-GYS 36 (89)
T ss_dssp HHHHHHHHHHHHHT------CHHHHHHHHHHHHHT-T--
T ss_pred HHHHHHHHHHHHhC------CHHHHHHHHHHHHHc-CCC
Confidence 45666666666543 677777777777665 654
No 212
>PF10811 DUF2532: Protein of unknown function (DUF2532); InterPro: IPR024386 This bacterial family of proteins has no known function.
Probab=35.13 E-value=22 Score=21.92 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=11.3
Q ss_pred ccccCCCCccHHHHHHHhH
Q psy9733 3 ADLTWVREEQIVARGRLVM 21 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~ 21 (86)
-.|||+..+..-+..+.|.
T Consensus 35 i~lpwsdct~ihk~leekl 53 (158)
T PF10811_consen 35 IELPWSDCTEIHKLLEEKL 53 (158)
T ss_pred hcCChhhhHHHHHHHHHHc
Confidence 3699999764433334343
No 213
>KOG0198|consensus
Probab=34.52 E-value=1.4e+02 Score=20.98 Aligned_cols=57 Identities=18% Similarity=0.028 Sum_probs=40.7
Q ss_pred cccccCCC-CccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 2 EADLTWVR-EEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 2 ~G~LPW~~-~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
+|.=||.. ....+++...........+-..++.+-.+|+.-+-......+|.=+.|-
T Consensus 217 Tg~~PW~~~~~~~~~~~~ig~~~~~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL 274 (313)
T KOG0198|consen 217 TGKPPWSEFFEEAEALLLIGREDSLPEIPDSLSDEAKDFLRKCFKRDPEKRPTAEELL 274 (313)
T ss_pred CCCCcchhhcchHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhhcCcccCcCHHHHh
Confidence 68899999 4444444444433333366677889999999999999999999866543
No 214
>KOG4086|consensus
Probab=34.41 E-value=18 Score=22.01 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=14.9
Q ss_pred HHHHHhCCCCCCCCChHHHH
Q psy9733 39 YLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 39 ~~~~i~~L~y~~~PdY~~l~ 58 (86)
|.+|++-|.|--.|+|+++.
T Consensus 47 F~nYLkYLeYWk~PeYak~l 66 (130)
T KOG4086|consen 47 FVNYLKYLEYWKEPEYAKFL 66 (130)
T ss_pred HHHHHHHHHHhcCccHHHHH
Confidence 45555667799999998765
No 215
>PF08795 DUF1796: Putative papain-like cysteine peptidase (DUF1796); InterPro: IPR014903 The proteins in this entry are uncharacterised; but are related to papain-like cysteine peptidases.
Probab=34.19 E-value=28 Score=21.89 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=14.3
Q ss_pred HHHHHcCC-CCCCccccCCC
Q psy9733 63 ILFRTLNH-QYDYLYHNNSS 81 (86)
Q Consensus 63 ~~~~~~~~-~~~~~~DW~~~ 81 (86)
-.+++.|. ....||||...
T Consensus 15 ~~L~k~~lr~~s~PfDW~~s 34 (167)
T PF08795_consen 15 YQLKKLGLRKFSGPFDWMFS 34 (167)
T ss_pred HHHHHcCCCCCCCCceeccC
Confidence 45677777 57899999865
No 216
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=33.69 E-value=35 Score=19.31 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=21.1
Q ss_pred HHhCCCCCCCCChHHHHHHHHHHHH
Q psy9733 42 YCRGLRFEEAPDYMYLRQLFRILFR 66 (86)
Q Consensus 42 ~i~~L~y~~~PdY~~l~~~l~~~~~ 66 (86)
.+|...|...|.|..|++.+..++.
T Consensus 10 ~~RRf~~~~~pt~~~L~~kl~~Lf~ 34 (82)
T cd06397 10 DTRRIVFPDIPTWEALASKLENLYN 34 (82)
T ss_pred ceEEEecCCCccHHHHHHHHHHHhC
Confidence 3567789999999999999988873
No 217
>PF05669 Med31: SOH1; InterPro: IPR008831 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med31 of the Mediator complex. It contains the Saccharomyces cerevisiae SOH1 homologues. SOH1 is responsible for the repression of temperature sensitive growth of the HPR1 mutant [] and has been found to be a component of the RNA polymerase II transcription complex. SOH1 not only interacts with factors involved in DNA repair, but transcription as well. Thus, the SOH1 protein may serve to couple these two processes [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006355 regulation of transcription, DNA-dependent, 0016592 mediator complex; PDB: 3FBI_D 3FBN_D.
Probab=33.55 E-value=10 Score=22.31 Aligned_cols=19 Identities=37% Similarity=0.817 Sum_probs=13.8
Q ss_pred HHHHHHHHHhCCCCCCCCChHH
Q psy9733 35 EFAMYLNYCRGLRFEEAPDYMY 56 (86)
Q Consensus 35 ef~~~~~~i~~L~y~~~PdY~~ 56 (86)
.|..+++| |.|-..|.|..
T Consensus 34 ~F~nYLkY---L~YW~~P~Yak 52 (101)
T PF05669_consen 34 AFINYLKY---LQYWKRPEYAK 52 (101)
T ss_dssp HHHHHHHH---GGGGGSTTGGG
T ss_pred HHHHHHHH---HHHhCCCchhh
Confidence 45555555 58999999986
No 218
>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C. Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re
Probab=33.31 E-value=1e+02 Score=20.65 Aligned_cols=52 Identities=6% Similarity=-0.085 Sum_probs=33.9
Q ss_pred CcccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCCh
Q psy9733 1 MEADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDY 54 (86)
Q Consensus 1 ~~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY 54 (86)
++|..||.............. ....+...+|.++.+++..+-.....++|..
T Consensus 190 ~~G~~pf~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~li~~~l~~dP~~R~s~ 241 (318)
T cd05570 190 LAGQSPFEGDDEDELFQSILE--DEVRYPRWLSKEAKSILKSFLTKNPEKRLGC 241 (318)
T ss_pred hhCCCCCCCCCHHHHHHHHHc--CCCCCCCcCCHHHHHHHHHHccCCHHHcCCC
Confidence 368999987654333222211 1112335678889999999888888888887
No 219
>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi
Probab=32.59 E-value=67 Score=20.99 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=32.1
Q ss_pred cccccCCCCc--cHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCC
Q psy9733 2 EADLTWVREE--QIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAP 52 (86)
Q Consensus 2 ~G~LPW~~~~--~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~P 52 (86)
+|..||.... ....+.+.+.... ..+...++.++.+++..+-.....++|
T Consensus 191 ~g~~pf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~R~ 242 (279)
T cd05633 191 RGHSPFRQHKTKDKHEIDRMTLTVN-VELPDSFSPELKSLLEGLLQRDVSKRL 242 (279)
T ss_pred hCCCCcCCCCCcCHHHHHHHhhcCC-cCCccccCHHHHHHHHHHhcCCHHHhc
Confidence 5889997653 2333444443322 345566778888888888777777777
No 220
>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate
Probab=32.44 E-value=89 Score=20.85 Aligned_cols=51 Identities=8% Similarity=-0.074 Sum_probs=31.1
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCCh
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDY 54 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY 54 (86)
+|.+||......+.+..... .. ..+-..++..+..++..+-.-...++|.-
T Consensus 193 tg~~p~~~~~~~~~~~~i~~-~~-~~~p~~~~~~~~~li~~~l~~~P~~R~~a 243 (318)
T cd05582 193 TGSLPFQGKDRKETMTMILK-AK-LGMPQFLSPEAQSLLRALFKRNPANRLGA 243 (318)
T ss_pred cCCCCCCCCCHHHHHHHHHc-CC-CCCCCCCCHHHHHHHHHHhhcCHhHcCCC
Confidence 68999987755443333221 11 12224466788888888777777777763
No 221
>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi
Probab=32.21 E-value=1.3e+02 Score=19.13 Aligned_cols=21 Identities=10% Similarity=-0.170 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCC
Q psy9733 33 PAEFAMYLNYCRGLRFEEAPD 53 (86)
Q Consensus 33 P~ef~~~~~~i~~L~y~~~Pd 53 (86)
|.++..++.-+-.....++|-
T Consensus 220 ~~~~~~~i~~~l~~~p~~R~~ 240 (262)
T cd05572 220 DKAAKDLIKQLLRRNPEERLG 240 (262)
T ss_pred CHHHHHHHHHHccCChhhCcC
Confidence 567777776666666666554
No 222
>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines
Probab=31.95 E-value=66 Score=20.93 Aligned_cols=59 Identities=5% Similarity=-0.071 Sum_probs=33.3
Q ss_pred cccccCCCCcc---HHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q psy9733 2 EADLTWVREEQ---IVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLF 61 (86)
Q Consensus 2 ~G~LPW~~~~~---~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l 61 (86)
+|..||..... ...+.+..... ....-..++.++.+++..+-+.....+|.-.-...++
T Consensus 203 tg~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l 264 (288)
T cd05583 203 TGASPFTVDGEQNSQSEISRRILKS-KPPFPKTMSAEARDFIQKLLEKDPKKRLGANGADEIK 264 (288)
T ss_pred hCCCCcccCcccchHHHHHHHHHcc-CCCCCcccCHHHHHHHHHHhcCCHhhccCcchHHHHh
Confidence 58889965421 22222221111 1122344667888888888777888888755455444
No 223
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=31.91 E-value=57 Score=21.38 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=30.2
Q ss_pred HhCCCCCCCCChHHHHHHHHHHHH-HcCCCCCCccccCCCccc
Q psy9733 43 CRGLRFEEAPDYMYLRQLFRILFR-TLNHQYDYLYHNNSSSLL 84 (86)
Q Consensus 43 i~~L~y~~~PdY~~l~~~l~~~~~-~~~~~~~~~~DW~~~~~~ 84 (86)
|-.-.--.-||+.+++.-+.-++. +.-++...||.|=+.|-|
T Consensus 101 Vgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNi 143 (193)
T PF07021_consen 101 VGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNI 143 (193)
T ss_pred hcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCc
Confidence 334445567999999999888843 345667789999877754
No 224
>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to
Probab=31.68 E-value=58 Score=21.84 Aligned_cols=49 Identities=4% Similarity=-0.150 Sum_probs=28.0
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCC
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAP 52 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~P 52 (86)
+|..||........+....... ..+-..++.++..++..+-.....++|
T Consensus 191 tg~~Pf~~~~~~~~~~~i~~~~--~~~p~~~~~~~~~ll~~~L~~dp~~R~ 239 (321)
T cd05591 191 AGQPPFEADNEDDLFESILHDD--VLYPVWLSKEAVSILKAFMTKNPNKRL 239 (321)
T ss_pred cCCCCCCCCCHHHHHHHHHcCC--CCCCCCCCHHHHHHHHHHhccCHHHcC
Confidence 6899998876544333322211 111233567777777777666666666
No 225
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=31.58 E-value=1.5e+02 Score=19.40 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcC
Q psy9733 31 SFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLN 69 (86)
Q Consensus 31 ~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~ 69 (86)
.+..++..+.+-.+.|.+. .++.+.+.+.+.+++..++
T Consensus 23 ~l~~Hl~RL~~Sa~~l~~~-~~~~~~l~~~i~~~i~~~~ 60 (249)
T cd01559 23 LLDAHLARLERSARRLGIP-EPDLPRLRAALESLLAAND 60 (249)
T ss_pred cHHHHHHHHHHHHHhcCcC-CCCHHHHHHHHHHHHHhCC
Confidence 4667899999999999999 7899999999999998765
No 226
>PLN00162 transport protein sec23; Provisional
Probab=30.78 E-value=55 Score=25.72 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=18.9
Q ss_pred hCCCCCCCCChHHHHHHHHHHHH
Q psy9733 44 RGLRFEEAPDYMYLRQLFRILFR 66 (86)
Q Consensus 44 ~~L~y~~~PdY~~l~~~l~~~~~ 66 (86)
++++|.+.|+|+.++++|.....
T Consensus 668 ~~~~~~~~~~~~~~~~~l~~p~~ 690 (761)
T PLN00162 668 RKAGYHNQPEHEAFAQLLEAPQA 690 (761)
T ss_pred hhcCCCCCcchhhHHHHHHhHHH
Confidence 56899999999999999865543
No 227
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=30.46 E-value=87 Score=21.70 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCC
Q psy9733 30 PSFPAEFAMYLNYCRGLRFEEAPD 53 (86)
Q Consensus 30 ~~~P~ef~~~~~~i~~L~y~~~Pd 53 (86)
.++|.++..+++.|++++....-.
T Consensus 71 ~~lpa~l~~yl~~i~~lN~~~~l~ 94 (279)
T COG2961 71 ADLPAELEPYLDAVRQLNPGGGLR 94 (279)
T ss_pred CCchHHHHHHHHHHHHhCCCCCcc
Confidence 788999999999999998887533
No 228
>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I
Probab=29.56 E-value=76 Score=21.27 Aligned_cols=50 Identities=4% Similarity=-0.209 Sum_probs=23.2
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCC
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPD 53 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~Pd 53 (86)
+|..||......+.....+... ..+-..++.++..++..+-.....++|.
T Consensus 191 ~g~~Pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~dP~~R~~ 240 (316)
T cd05620 191 IGQSPFHGDDEDELFESIRVDT--PHYPRWITKESKDILEKLFERDPTRRLG 240 (316)
T ss_pred hCCCCCCCCCHHHHHHHHHhCC--CCCCCCCCHHHHHHHHHHccCCHHHcCC
Confidence 6889998765443333333322 1111223344444444444444444443
No 229
>KOG1324|consensus
Probab=29.54 E-value=25 Score=22.96 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=9.0
Q ss_pred cccccCCCCccH
Q psy9733 2 EADLTWVREEQI 13 (86)
Q Consensus 2 ~G~LPW~~~~~~ 13 (86)
.|.|||.-..+.
T Consensus 19 ~g~LPW~lpsem 30 (190)
T KOG1324|consen 19 NGDLPWPLPSEM 30 (190)
T ss_pred CCCCCCCCHHHH
Confidence 699999976443
No 230
>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase. Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina
Probab=29.17 E-value=1.6e+02 Score=18.82 Aligned_cols=56 Identities=13% Similarity=0.010 Sum_probs=29.8
Q ss_pred cccccCCCCccHHHHH-HHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHH
Q psy9733 2 EADLTWVREEQIVARG-RLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYL 57 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~-~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l 57 (86)
+|..||.......... .....-....+...++.++..++..+-+....++|.-..+
T Consensus 206 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l 262 (268)
T cd06624 206 TGKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRCFEPDPDKRASAHDL 262 (268)
T ss_pred hCCCCCccccChhhhHhhhhhhccCCCCCcccCHHHHHHHHHHcCCCchhCCCHHHH
Confidence 4677776654322211 1111111223334566777777777777777777765443
No 231
>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co
Probab=28.98 E-value=1.1e+02 Score=19.85 Aligned_cols=50 Identities=10% Similarity=0.031 Sum_probs=29.1
Q ss_pred cccccCCCCcc--HHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCC
Q psy9733 2 EADLTWVREEQ--IVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAP 52 (86)
Q Consensus 2 ~G~LPW~~~~~--~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~P 52 (86)
+|.+||..... ...+........ ..+...++.++..++.-+-...-..+|
T Consensus 191 ~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~li~~~l~~~p~~R~ 242 (278)
T cd05606 191 RGHSPFRQHKTKDKHEIDRMTLTMA-VELPDSFSPELRSLLEGLLQRDVNRRL 242 (278)
T ss_pred hCCCCCCCCCccchHHHHHHhhccC-CCCCCcCCHHHHHHHHHHhhcCHHhcc
Confidence 68899987632 223322222211 223344567788888877777777777
No 232
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=28.97 E-value=72 Score=19.88 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccccC
Q psy9733 32 FPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLYHNN 79 (86)
Q Consensus 32 ~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~~~~~~~~DW~ 79 (86)
+-+-+.++.+++..+.....|||..|..-+...+. .+......+|.
T Consensus 45 lkRDl~~~a~~~~~~~~~~~~~~~lie~slw~~L~--~ItDkTqvEw~ 90 (146)
T PF07295_consen 45 LKRDLEEFARYYEELREWLSPDLQLIEESLWDELS--SITDKTQVEWA 90 (146)
T ss_pred HHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH--hhhchhHHHHH
Confidence 44566667777777999999999999999988875 34445556663
No 233
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=28.84 E-value=1.7e+02 Score=19.07 Aligned_cols=55 Identities=9% Similarity=-0.017 Sum_probs=31.3
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCc--CCChHHHHHHHHHHHhCCCCCCCCChHHH
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWH--NPSFPAEFAMYLNYCRGLRFEEAPDYMYL 57 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l--~~~~P~ef~~~~~~i~~L~y~~~PdY~~l 57 (86)
+|..||........+...+... ...+ -..+|..+..+++.+-+..-.++|....+
T Consensus 210 ~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i 266 (285)
T cd06648 210 DGEPPYFNEPPLQAMKRIRDNL-PPKLKNLHKVSPRLRSFLDRMLVRDPAQRATAAEL 266 (285)
T ss_pred hCCCCCcCCCHHHHHHHHHhcC-CCCCcccccCCHHHHHHHHHHcccChhhCcCHHHH
Confidence 5777876654433333333221 1111 12356778888888877788888865443
No 234
>smart00750 KIND kinase non-catalytic C-lobe domain. It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features
Probab=28.84 E-value=1.3e+02 Score=17.83 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHH
Q psy9733 35 EFAMYLNYCRGLRFEEAPDYMYLRQLFRILFR 66 (86)
Q Consensus 35 ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~ 66 (86)
++.+++..+-.....++|.-..+......+..
T Consensus 140 ~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~~ 171 (176)
T smart00750 140 SFADFMRVCASRLPQRREAANHYLAHCRALFA 171 (176)
T ss_pred hHHHHHHHHHhcccccccCHHHHHHHHHHHHH
Confidence 58888888888888999988887776665544
No 235
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=28.62 E-value=58 Score=17.49 Aligned_cols=27 Identities=7% Similarity=-0.001 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCCCC----------CccccCCCcc
Q psy9733 57 LRQLFRILFRTLNHQYD----------YLYHNNSSSL 83 (86)
Q Consensus 57 l~~~l~~~~~~~~~~~~----------~~~DW~~~~~ 83 (86)
++..|..++++.|+..+ .+.||+....
T Consensus 23 i~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~~ 59 (71)
T PF02196_consen 23 IRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDSS 59 (71)
T ss_dssp HHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBGG
T ss_pred HHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCcee
Confidence 67888999999887653 4557766543
No 236
>KOG1498|consensus
Probab=28.36 E-value=66 Score=23.68 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=27.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHcCCCCCCccc
Q psy9733 45 GLRFEEAPDYMYLRQLFRILFRTLNHQYDYLYH 77 (86)
Q Consensus 45 ~L~y~~~PdY~~l~~~l~~~~~~~~~~~~~~~D 77 (86)
+-+|.++||+..++-.+-..+.+.|......|+
T Consensus 198 ~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~ 230 (439)
T KOG1498|consen 198 NKKFFEKPDVQELKLKYYELMIRLGLHDRAYLN 230 (439)
T ss_pred hHHhcCCccHHHHHHHHHHHHHHhcccccchhh
Confidence 457999999999999999999998866655554
No 237
>PF11483 DUF3209: Protein of unknown function (DUF3209); InterPro: IPR021577 This family of proteins has no known function. ; PDB: 2EHW_D.
Probab=28.33 E-value=28 Score=21.10 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=9.9
Q ss_pred CCCCCChHHHHHHHHHH
Q psy9733 48 FEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 48 y~~~PdY~~l~~~l~~~ 64 (86)
-.+.|.|+|+++.+-.+
T Consensus 71 ~~~dP~~~YlRg~Lvav 87 (123)
T PF11483_consen 71 DSDDPKYDYLRGRLVAV 87 (123)
T ss_dssp STT-H---HHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHH
Confidence 46889999999988543
No 238
>KOG0196|consensus
Probab=28.31 E-value=2.3e+02 Score=23.18 Aligned_cols=62 Identities=10% Similarity=-0.005 Sum_probs=46.3
Q ss_pred cCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHc
Q psy9733 6 TWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTL 68 (86)
Q Consensus 6 PW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~ 68 (86)
|.=...+.+.|...-+..+...= -+||..+.++|--+=+-.=..+|.++.|-+.|.+++++-
T Consensus 834 PYWdmSNQdVIkaIe~gyRLPpP-mDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklIrnP 895 (996)
T KOG0196|consen 834 PYWDMSNQDVIKAIEQGYRLPPP-MDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRNP 895 (996)
T ss_pred cccccchHHHHHHHHhccCCCCC-CCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCc
Confidence 33334455666665555432211 478999999999999999999999999999999999763
No 239
>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity
Probab=28.09 E-value=1.7e+02 Score=18.69 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=22.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q psy9733 31 SFPAEFAMYLNYCRGLRFEEAPDYMYLRQLF 61 (86)
Q Consensus 31 ~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l 61 (86)
....++.+++.-+-+....++|.++.+.+.|
T Consensus 227 ~~~~~~~~li~~~l~~~p~~Rps~~~il~~l 257 (258)
T cd05078 227 PKWTELANLINQCMDYEPDFRPSFRAIIRDL 257 (258)
T ss_pred CCcHHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence 3345677777777778888888887776554
No 240
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=28.09 E-value=94 Score=18.99 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=14.5
Q ss_pred CCCCCCChHHHHHHHHHHHHHcCCC
Q psy9733 47 RFEEAPDYMYLRQLFRILFRTLNHQ 71 (86)
Q Consensus 47 ~y~~~PdY~~l~~~l~~~~~~~~~~ 71 (86)
.|.+.|+|.++..+...+. +.|+.
T Consensus 116 ~f~~~~~l~~i~~~y~~L~-~~G~~ 139 (141)
T cd03565 116 AFRGSPDLTGVVEVYEELK-KKGIE 139 (141)
T ss_pred HhCCCccchHHHHHHHHHH-HcCCC
Confidence 3666677777776666554 33544
No 241
>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p
Probab=28.04 E-value=1.5e+02 Score=19.21 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=21.5
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 30 PSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 30 ~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
...+.++.+++..+-.-....+|..+.+.
T Consensus 223 ~~~~~~~~~li~~~l~~~P~~Rp~~~eil 251 (279)
T cd06619 223 GQFSEKFVHFITQCMRKQPKERPAPENLM 251 (279)
T ss_pred CcCCHHHHHHHHHHhhCChhhCCCHHHHh
Confidence 44567888888888777888888765543
No 242
>PF10004 DUF2247: Uncharacterized protein conserved in bacteria (DUF2247); InterPro: IPR016630 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.92 E-value=1.1e+02 Score=19.25 Aligned_cols=39 Identities=10% Similarity=0.265 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHhCCC---CCCCCChHHHHHHHHHHHHHc
Q psy9733 30 PSFPAEFAMYLNYCRGLR---FEEAPDYMYLRQLFRILFRTL 68 (86)
Q Consensus 30 ~~~P~ef~~~~~~i~~L~---y~~~PdY~~l~~~l~~~~~~~ 68 (86)
-|.|..+..|.+|.-+-. |....+|..|.+.+++-+.+.
T Consensus 117 F~yPedm~~Fv~Ymp~~~P~~~~~e~n~~~L~~~~~~yL~~e 158 (161)
T PF10004_consen 117 FDYPEDMASFVRYMPPKDPSEYSTEENINRLYNRWKEYLDSE 158 (161)
T ss_pred cCCHhHHHHHHhcCCcccccccchhhhHHHHHHHHHHHHHHh
Confidence 478999999999988766 677789999999888877654
No 243
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.27 E-value=1e+02 Score=18.50 Aligned_cols=24 Identities=17% Similarity=0.175 Sum_probs=19.9
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCc
Q psy9733 52 PDYMYLRQLFRILFRTLNHQYDYL 75 (86)
Q Consensus 52 PdY~~l~~~l~~~~~~~~~~~~~~ 75 (86)
--|-.++.-|..+++..|+..+++
T Consensus 69 ~sYptvR~kld~vlramgy~p~~e 92 (122)
T COG3877 69 ISYPTVRTKLDEVLRAMGYNPDSE 92 (122)
T ss_pred CccHHHHHHHHHHHHHcCCCCCCC
Confidence 357889999999999999987654
No 244
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=26.25 E-value=65 Score=18.21 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.7
Q ss_pred CChHHHHHHHHHHHHHc
Q psy9733 52 PDYMYLRQLFRILFRTL 68 (86)
Q Consensus 52 PdY~~l~~~l~~~~~~~ 68 (86)
|+|..+..++..++...
T Consensus 1 ~~~~~~~~il~~l~~~~ 17 (101)
T cd05509 1 PLYTQLKKVLDSLKNHK 17 (101)
T ss_pred ChHHHHHHHHHHHHhCC
Confidence 89999999999998653
No 245
>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki
Probab=26.21 E-value=1.7e+02 Score=18.33 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHH
Q psy9733 34 AEFAMYLNYCRGLRFEEAPDYMYLRQLF 61 (86)
Q Consensus 34 ~ef~~~~~~i~~L~y~~~PdY~~l~~~l 61 (86)
..+.+++..+-.....++|....+.+.|
T Consensus 231 ~~~~~li~~~l~~~p~~Rpt~~~il~~l 258 (259)
T cd05037 231 AELANLINQCWTYDPTKRPSFRAILRDL 258 (259)
T ss_pred hHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence 5677777777777888888766655443
No 246
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=26.12 E-value=2.5e+02 Score=20.04 Aligned_cols=37 Identities=16% Similarity=0.369 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcC
Q psy9733 30 PSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLN 69 (86)
Q Consensus 30 ~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~ 69 (86)
+.+++.+..+++.+.+ .-.|.|..|..++..++.+..
T Consensus 41 ~~l~~~y~~~~r~~~k---~R~~sy~~li~Ll~~LLs~id 77 (337)
T PF12030_consen 41 KRLKRMYQNYIRLIEK---GRPPSYESLIELLDYLLSQID 77 (337)
T ss_pred hhHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHcCC
Confidence 4577777777776655 667899999999999998754
No 247
>TIGR03412 iscX_yfhJ FeS assembly protein IscX. Members of this protein family are YfhJ, a protein of the ISC system for iron-sulfur cluster assembly. Other genes in the system include iscSUA, hscBA, and fdx.
Probab=25.89 E-value=87 Score=16.81 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCC-CCCCCCCh
Q psy9733 35 EFAMYLNYCRGL-RFEEAPDY 54 (86)
Q Consensus 35 ef~~~~~~i~~L-~y~~~PdY 54 (86)
.|.++.+.|..| .|++.|+-
T Consensus 25 rFtdL~~wV~~L~~FdDdp~~ 45 (63)
T TIGR03412 25 RFTDLHQWVLELPGFDDDPKR 45 (63)
T ss_pred eHHHHHHHHHhCcCcCCCccc
Confidence 689999999999 69999975
No 248
>KOG3157|consensus
Probab=25.80 E-value=2.2e+02 Score=19.30 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhC----CC---------------CCCCCChHHHHHHHHHHHHHcCCCC
Q psy9733 33 PAEFAMYLNYCRG----LR---------------FEEAPDYMYLRQLFRILFRTLNHQY 72 (86)
Q Consensus 33 P~ef~~~~~~i~~----L~---------------y~~~PdY~~l~~~l~~~~~~~~~~~ 72 (86)
|.+...+.+||++ |. -.+.||+..|.++=+++++..|+..
T Consensus 145 pse~~~l~~~i~~~c~nL~f~GlMTIGs~~~s~ss~eNpDF~~L~~~r~~ic~~lg~~~ 203 (244)
T KOG3157|consen 145 PSEAPELAEHIKSECKNLKFSGLMTIGSFDNSHSSGENPDFQVLVKLRESICKKLGIPA 203 (244)
T ss_pred hhhhHHHHHHHHHhCCcceeeeeEEeccccccccCCCCccHHHHHHHHHHHHHHhCCCh
Confidence 5566666666654 22 2467999999999999999998874
No 249
>PF14473 RD3: RD3 protein
Probab=25.68 E-value=65 Score=19.88 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=34.1
Q ss_pred cCcCCCh-HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy9733 26 YWHNPSF-PAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 26 ~~l~~~~-P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
+.+|..+ |.+-..++.--+.+--...|.=.-+-.+|+.+++.
T Consensus 81 E~lCski~P~~~g~vI~RFRellae~e~~~~Ev~~iFr~vl~e 123 (133)
T PF14473_consen 81 EDLCSKIPPCECGPVISRFRELLAENEPEVWEVPRIFRSVLQE 123 (133)
T ss_pred HHHHhcCChhhhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 4567655 56888888888888888899999999999998875
No 250
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=25.68 E-value=63 Score=19.36 Aligned_cols=38 Identities=11% Similarity=0.055 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccccC
Q psy9733 35 EFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLYHNN 79 (86)
Q Consensus 35 ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~~~~~~~~DW~ 79 (86)
+=.-++..+...+|+..=.|+.|+..++.. +-..|||=
T Consensus 56 EDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~-------p~FrFDwf 93 (118)
T PF09111_consen 56 EDRFLLCMLYKYGYDAEGNWEKIKQEIRES-------PLFRFDWF 93 (118)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHH--------CGGCT-HH
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHhC-------CCcccchh
Confidence 445567778888997777899998887553 34677773
No 251
>KOG0194|consensus
Probab=25.42 E-value=2.9e+02 Score=20.68 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=50.1
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcC
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLN 69 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~ 69 (86)
|.=|+.+.+..+.....+.+-.....-...|.+...++..+-.-..+++|.-..+.+.+..+.....
T Consensus 359 g~~Py~g~~~~~v~~kI~~~~~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~ 425 (474)
T KOG0194|consen 359 GAEPYPGMKNYEVKAKIVKNGYRMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKE 425 (474)
T ss_pred CCCCCCCCCHHHHHHHHHhcCccCCCCCCCHHHHHHHHHHhccCChhhccCHHHHHHHHHHHHhccc
Confidence 4557777776655455533222233335889999999999999999999999999999999887654
No 252
>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be
Probab=25.32 E-value=1.9e+02 Score=19.32 Aligned_cols=50 Identities=8% Similarity=-0.015 Sum_probs=29.9
Q ss_pred CcccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCC
Q psy9733 1 MEADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAP 52 (86)
Q Consensus 1 ~~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~P 52 (86)
++|..||............ .. ....+-..++.++..++.-+-.....++|
T Consensus 189 ltg~~Pf~~~~~~~~~~~~-~~-~~~~~p~~~~~~~~~li~~~L~~dP~~R~ 238 (323)
T cd05571 189 MCGRLPFYNQDHEKLFELI-LM-EEIRFPRTLSPEAKSLLAGLLKKDPKQRL 238 (323)
T ss_pred hcCCCCCCCCCHHHHHHHH-Hc-CCCCCCCCCCHHHHHHHHHHccCCHHHcC
Confidence 3688999775433222221 11 11223345677888888887777777777
No 253
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.31 E-value=27 Score=21.67 Aligned_cols=9 Identities=33% Similarity=0.815 Sum_probs=7.6
Q ss_pred cccccCCCC
Q psy9733 2 EADLTWVRE 10 (86)
Q Consensus 2 ~G~LPW~~~ 10 (86)
.|+|||-..
T Consensus 14 ~gtl~w~qt 22 (165)
T COG4647 14 EGTLPWPQT 22 (165)
T ss_pred cCCCCcHHH
Confidence 699999875
No 254
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=25.26 E-value=2.2e+02 Score=19.13 Aligned_cols=39 Identities=8% Similarity=-0.002 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCC
Q psy9733 32 FPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNH 70 (86)
Q Consensus 32 ~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~~ 70 (86)
+..++..+.+-.+.|.+...++.+.++..+.++++.++.
T Consensus 43 l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~l~~~~~~~~~ 81 (283)
T PRK07650 43 LDDHYDRLNDALDTLQIEWTMTKDEVLLILKNLLEKNGL 81 (283)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 567899999999999999888999999999999887653
No 255
>PF04384 Fe-S_assembly: Iron-sulphur cluster assembly; InterPro: IPR007479 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents IscX proteins (also known as hypothetical protein YfhJ) that are part of the ISC system. IscX is active as a monomer. The structure of YfhJ is an orthogonal alpha-bundle []. YfhJ is a small acidic protein that binds IscS, and contains a modified winged helix motif that is usually found in DNA-binding proteins []. YfhJ/IscX can bind Fe, and may function as an Fe donor in the assembly of FeS clusters ; GO: 0016226 iron-sulfur cluster assembly; PDB: 2BZT_A 1UJ8_A.
Probab=25.04 E-value=83 Score=16.94 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhCC-CCCCCCChH
Q psy9733 34 AEFAMYLNYCRGL-RFEEAPDYM 55 (86)
Q Consensus 34 ~ef~~~~~~i~~L-~y~~~PdY~ 55 (86)
-.|.++.+.|..| .|.+.|+-.
T Consensus 25 vrFtdL~~wv~~L~~F~Ddp~~~ 47 (64)
T PF04384_consen 25 VRFTDLHEWVLELPDFDDDPKRC 47 (64)
T ss_dssp --HHHHHHHHHCSTTB-S-CCG-
T ss_pred ecHHHHHHHHHhCcCcCCCcccc
Confidence 3699999999999 599999865
No 256
>KOG0199|consensus
Probab=24.94 E-value=2.9e+02 Score=22.52 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=40.4
Q ss_pred cccccCCCCccHHHHHHH--hHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHH
Q psy9733 2 EADLTWVREEQIVARGRL--VMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQL 60 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~--K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~ 60 (86)
-|.-||.+....+....+ ++..+.. +.||..+.+++.-+=.-+-.|+|-+..|+.-
T Consensus 311 yGEePW~G~~g~qIL~~iD~~erLpRP---k~csedIY~imk~cWah~paDRptFsair~~ 368 (1039)
T KOG0199|consen 311 YGEEPWVGCRGIQILKNIDAGERLPRP---KYCSEDIYQIMKNCWAHNPADRPTFSAIRED 368 (1039)
T ss_pred cCCCCCCCCCHHHHHHhccccccCCCC---CCChHHHHHHHHHhccCCccccccHHHHHHh
Confidence 488899998755432221 2222211 5679999999999999999999999999843
No 257
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=24.83 E-value=86 Score=20.36 Aligned_cols=27 Identities=11% Similarity=-0.047 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCCcccc
Q psy9733 51 APDYMYLRQLFRILFRTLNHQYDYLYHN 78 (86)
Q Consensus 51 ~PdY~~l~~~l~~~~~~~~~~~~~~~DW 78 (86)
.+.-..-|.+|+.+|.+.|+.. .+-+|
T Consensus 137 s~~~~~nR~lL~~~M~~~GF~~-~~~EW 163 (184)
T PRK10178 137 PPAAQRNRLLLLGIMHAAGFVH-IASEW 163 (184)
T ss_pred CHHHHHHHHHHHHHHHHcCCCC-CCCcc
Confidence 3456778999999999999874 45444
No 258
>KOG1345|consensus
Probab=24.59 E-value=79 Score=22.52 Aligned_cols=10 Identities=10% Similarity=0.707 Sum_probs=8.4
Q ss_pred CcccccCCCC
Q psy9733 1 MEADLTWVRE 10 (86)
Q Consensus 1 ~~G~LPW~~~ 10 (86)
|+|.+||+..
T Consensus 219 ltG~~PWQka 228 (378)
T KOG1345|consen 219 LTGKFPWQKA 228 (378)
T ss_pred ecCCCcchhh
Confidence 5899999974
No 259
>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of
Probab=24.12 E-value=1.7e+02 Score=18.88 Aligned_cols=50 Identities=8% Similarity=-0.103 Sum_probs=28.7
Q ss_pred cccccCCCCcc---HHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCC
Q psy9733 2 EADLTWVREEQ---IVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAP 52 (86)
Q Consensus 2 ~G~LPW~~~~~---~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~P 52 (86)
.|.+||..... ...+.+.... ....+-...+.++..++.-+-+..-.++|
T Consensus 189 ~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~R~ 241 (277)
T cd05577 189 AGRSPFRQRKEKVEKEELKRRTLE-MAVEYPDKFSPEAKDLCEALLQKDPEKRL 241 (277)
T ss_pred hCCCCCCCCcccccHHHHHhcccc-ccccCCccCCHHHHHHHHHHccCChhHcc
Confidence 68899987643 2222222111 12223344577788888777777777777
No 260
>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase. Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ
Probab=23.81 E-value=2e+02 Score=18.12 Aligned_cols=58 Identities=9% Similarity=0.072 Sum_probs=34.8
Q ss_pred ccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q psy9733 3 ADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLF 61 (86)
Q Consensus 3 G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l 61 (86)
|..|+........+......... ..-...|.++.+++..+-.-...++|.-..+.+.|
T Consensus 198 g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l 255 (256)
T cd05112 198 GKTPYENRSNSEVVETINAGFRL-YKPRLASQSVYELMQHCWKERPEDRPSFSLLLHQL 255 (256)
T ss_pred CCCCCCcCCHHHHHHHHhCCCCC-CCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHhh
Confidence 77888766544434333322211 11123467888888888888888888877665543
No 261
>PF04611 AalphaY_MDB: Mating type protein A alpha Y mating type dependent binding region ; InterPro: IPR007689 Mating-type protein A-alpha specifies the A-alpha-Y mating type. The A-alpha-Y protein binds to the AalphaZ protein of another mating type in Schizophyllum commune [] and may also regulate gene expression of the homokaryotic cell.; GO: 0006355 regulation of transcription, DNA-dependent, 0019953 sexual reproduction
Probab=23.74 E-value=64 Score=20.02 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=12.0
Q ss_pred CCCChHHHHHHHHHH
Q psy9733 50 EAPDYMYLRQLFRIL 64 (86)
Q Consensus 50 ~~PdY~~l~~~l~~~ 64 (86)
-.|||++++..|..+
T Consensus 45 p~P~ld~lr~rL~~a 59 (147)
T PF04611_consen 45 PTPDLDGLRTRLQEA 59 (147)
T ss_pred CCccHHHHHHHHHHc
Confidence 468999999988654
No 262
>PRK10721 hypothetical protein; Provisional
Probab=23.68 E-value=99 Score=16.76 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCC-CCCCCCCh
Q psy9733 35 EFAMYLNYCRGL-RFEEAPDY 54 (86)
Q Consensus 35 ef~~~~~~i~~L-~y~~~PdY 54 (86)
.|.++.+.|-.| .|++.|+-
T Consensus 28 rFtDL~~wV~~L~~FdDdp~~ 48 (66)
T PRK10721 28 RFTDMHQWICELEDFDDDPQA 48 (66)
T ss_pred ehHHHHHHHHhCcCcCCCccc
Confidence 699999999999 69999975
No 263
>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc
Probab=23.66 E-value=1.8e+02 Score=18.68 Aligned_cols=13 Identities=8% Similarity=0.077 Sum_probs=8.6
Q ss_pred cccccCCCCccHH
Q psy9733 2 EADLTWVREEQIV 14 (86)
Q Consensus 2 ~G~LPW~~~~~~~ 14 (86)
+|..||.......
T Consensus 195 ~g~~pf~~~~~~~ 207 (283)
T cd07835 195 NRRPLFPGDSEID 207 (283)
T ss_pred hCCCCCCCCCHHH
Confidence 5788887765433
No 264
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=23.60 E-value=89 Score=15.40 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHHHHHHcCCC
Q psy9733 33 PAEFAMYLNYCRGLRFEEAPDY--MYLRQLFRILFRTLNHQ 71 (86)
Q Consensus 33 P~ef~~~~~~i~~L~y~~~PdY--~~l~~~l~~~~~~~~~~ 71 (86)
+.+|..+..+|....=-+-++| ..+..-|...+...|+.
T Consensus 2 d~~f~~~~~~i~~~~Gi~l~~~K~~~l~rRl~~rm~~~~~~ 42 (57)
T PF03705_consen 2 DAEFERFRELIYRRTGIDLSEYKRSLLERRLARRMRALGLP 42 (57)
T ss_dssp HHHHHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHCCCCchhhHHHHHHHHHHHHHHcCCC
Confidence 3456666666664444444445 46667777777776654
No 265
>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul
Probab=23.57 E-value=2.1e+02 Score=19.22 Aligned_cols=32 Identities=6% Similarity=-0.251 Sum_probs=23.5
Q ss_pred CcCCChHHHHHHHHHHHhCCCCCCCCChHHHH
Q psy9733 27 WHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLR 58 (86)
Q Consensus 27 ~l~~~~P~ef~~~~~~i~~L~y~~~PdY~~l~ 58 (86)
.++..+|.++.+++..+-+....++|.-..+.
T Consensus 262 ~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il 293 (337)
T cd07852 262 ELLPKASDDALDLLKKLLVFNPNKRLTAEEAL 293 (337)
T ss_pred hhccCCCHHHHHHHHHhccCCcccccCHHHHh
Confidence 34455678888888888888888888855444
No 266
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=23.44 E-value=2.4e+02 Score=18.97 Aligned_cols=36 Identities=8% Similarity=-0.094 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHc
Q psy9733 32 FPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTL 68 (86)
Q Consensus 32 ~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~ 68 (86)
+..++..+.+-.+.|... .|+++.++..+.+++..+
T Consensus 34 l~~Hl~RL~~sa~~l~i~-~~~~~~l~~~i~~~i~~~ 69 (279)
T cd01557 34 PDENAERLNRSARRLGLP-PFSVEEFIDAIKELVKLD 69 (279)
T ss_pred HHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhc
Confidence 567889999999999998 889999999999999876
No 267
>PF15007 CEP44: Centrosomal spindle body, CEP44
Probab=23.38 E-value=1.4e+02 Score=18.40 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=11.6
Q ss_pred cCCChHHHHHHHHHHHh
Q psy9733 28 HNPSFPAEFAMYLNYCR 44 (86)
Q Consensus 28 l~~~~P~ef~~~~~~i~ 44 (86)
+-.|-|..|..|+.|+-
T Consensus 27 l~~G~p~afLpil~~~L 43 (131)
T PF15007_consen 27 LYKGDPSAFLPILHYAL 43 (131)
T ss_pred HhcCCHHHHHHHHHHHH
Confidence 45677777777777764
No 268
>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha. Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw
Probab=23.38 E-value=80 Score=21.29 Aligned_cols=45 Identities=4% Similarity=-0.048 Sum_probs=25.5
Q ss_pred CcccccCCCCccHHHHHHH---hHcCCccCcCCChHHHHHHHHHHHhC
Q psy9733 1 MEADLTWVREEQIVARGRL---VMVAPSYWHNPSFPAEFAMYLNYCRG 45 (86)
Q Consensus 1 ~~G~LPW~~~~~~~~i~~~---K~~~~~~~l~~~~P~ef~~~~~~i~~ 45 (86)
+.|..||......+.+... +........+.+++.++.+++..+-.
T Consensus 202 l~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~~li~~ll~ 249 (332)
T cd05623 202 LYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAKDLIRRLIC 249 (332)
T ss_pred hcCCCCCCCCCHHHHHHHHhCCCccccCCCccccCCHHHHHHHHHHcc
Confidence 3689999876544333332 22223333445667777777766543
No 269
>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N. Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved
Probab=23.36 E-value=2.4e+02 Score=18.87 Aligned_cols=50 Identities=6% Similarity=-0.094 Sum_probs=30.4
Q ss_pred cccccCCCCccHHHHHHHhHcCCccCcCCChHHHHHHHHHHHhCCCCCCCCC
Q psy9733 2 EADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPD 53 (86)
Q Consensus 2 ~G~LPW~~~~~~~~i~~~K~~~~~~~l~~~~P~ef~~~~~~i~~L~y~~~Pd 53 (86)
+|..||......+....... .. ..+-..+|.++.+++..+-.....++|.
T Consensus 196 ~G~~pf~~~~~~~~~~~i~~-~~-~~~p~~~~~~~~~li~~~L~~dP~~R~~ 245 (324)
T cd05589 196 VGESPFPGDDEEEVFDSIVN-DE-VRYPRFLSREAISIMRRLLRRNPERRLG 245 (324)
T ss_pred hCCCCCCCCCHHHHHHHHHh-CC-CCCCCCCCHHHHHHHHHHhhcCHhHcCC
Confidence 68999987654433322221 11 1122456778888888887777777773
No 270
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=23.36 E-value=1.4e+02 Score=18.31 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=16.8
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCCCC
Q psy9733 28 HNPSFPAEFAMYLNYCRGLRFEEAPD 53 (86)
Q Consensus 28 l~~~~P~ef~~~~~~i~~L~y~~~Pd 53 (86)
...++++.+...+++|.+..+.+-|+
T Consensus 11 ~y~~l~~~i~~ai~~l~~~d~~~l~~ 36 (153)
T PF04074_consen 11 RYKGLHPNIQKAIEFLKEHDLEELPD 36 (153)
T ss_dssp TTTT--HHHHHHHHHHHTS-GCC--S
T ss_pred hhcccCHHHHHHHHHHHhCChhhcCC
Confidence 34678899999999999987766653
No 271
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=23.32 E-value=1e+02 Score=24.10 Aligned_cols=23 Identities=13% Similarity=0.028 Sum_probs=18.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHHc
Q psy9733 46 LRFEEAPDYMYLRQLFRILFRTL 68 (86)
Q Consensus 46 L~y~~~PdY~~l~~~l~~~~~~~ 68 (86)
|+..++|||+.+-++-.+...+.
T Consensus 530 ~eg~~kPdY~~cV~I~T~~Alke 552 (666)
T PRK00733 530 MEGTAKPDYARCVDISTKAALKE 552 (666)
T ss_pred ccCCCCCChHHHHHHHHHHHHHh
Confidence 47889999999999887775543
No 272
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=23.29 E-value=1.8e+02 Score=22.92 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=15.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHH
Q psy9733 46 LRFEEAPDYMYLRQLFRILFRT 67 (86)
Q Consensus 46 L~y~~~PdY~~l~~~l~~~~~~ 67 (86)
|+..++|||+++-.+-.+...+
T Consensus 555 ~eg~~~pdy~~cV~I~T~~alk 576 (682)
T PF03030_consen 555 MEGKAKPDYARCVDISTRAALK 576 (682)
T ss_dssp TTTSS---HHHHHHHHHHHHHH
T ss_pred ccCCCCCChHHHHHHHHHHHHH
Confidence 6899999999999887766544
No 273
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1. This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen
Probab=23.14 E-value=2.3e+02 Score=18.73 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=26.6
Q ss_pred HHHHHHHHH----HhCCCCCCCCChHHHHHHHHHHHHHcCCC
Q psy9733 34 AEFAMYLNY----CRGLRFEEAPDYMYLRQLFRILFRTLNHQ 71 (86)
Q Consensus 34 ~ef~~~~~~----i~~L~y~~~PdY~~l~~~l~~~~~~~~~~ 71 (86)
.++..++++ +..+.|.+.++-......|+.++.+.+.+
T Consensus 173 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~lr~l~~R~~l~ 214 (233)
T TIGR00050 173 DQLELLLEHLEEILLSLGFIPEHKIRRVMRKFRRLYGRAGLE 214 (233)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHhcCCCC
Confidence 355555544 45677877777777788889998887654
No 274
>KOG3272|consensus
Probab=23.11 E-value=17 Score=23.94 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=33.9
Q ss_pred ccCCCCccHH--HHHHHhHcCCccCcCC--ChHHHHHHHHHHHhCCCCCCC-CChHHHHHHH
Q psy9733 5 LTWVREEQIV--ARGRLVMVAPSYWHNP--SFPAEFAMYLNYCRGLRFEEA-PDYMYLRQLF 61 (86)
Q Consensus 5 LPW~~~~~~~--~i~~~K~~~~~~~l~~--~~P~ef~~~~~~i~~L~y~~~-PdY~~l~~~l 61 (86)
-||.++++.. ++++ ........|+ -++.-..+|++-+...+-+.. |||+.++.+=
T Consensus 92 T~w~NLKKt~~M~~Gq--v~fh~~k~vr~~~~~~r~Nei~NrL~kTkve~~~~d~~~lrEar 151 (207)
T KOG3272|consen 92 TPWSNLKKTADMDVGQ--VGFHSTKQVRRIVVEKRINEIVNRLAKTKVERFKPDFAALREAR 151 (207)
T ss_pred chhHhhcccCCCCccc--ccchhhhheeeeeecchHHHHHHHHhhhhHhhcchhHHHHHHHH
Confidence 4788875432 2222 1122223332 246678888888888777777 9999988775
No 275
>PRK13576 3-dehydroquinate dehydratase; Provisional
Probab=22.74 E-value=1e+02 Score=20.39 Aligned_cols=19 Identities=11% Similarity=0.333 Sum_probs=17.2
Q ss_pred CCCCCCChHHHHHHHHHHH
Q psy9733 47 RFEEAPDYMYLRQLFRILF 65 (86)
Q Consensus 47 ~y~~~PdY~~l~~~l~~~~ 65 (86)
.|+.+|+++.|.+++.++.
T Consensus 111 dF~~TP~~~eL~~~l~~m~ 129 (216)
T PRK13576 111 YFDYLPTSEEVKEIVSKFY 129 (216)
T ss_pred CCCCCcCHHHHHHHHHHHH
Confidence 4999999999999999864
No 276
>PF12415 rpo132: Poxvirus DNA dependent RNA polymerase; InterPro: IPR024390 All three classes of poxvirus genes - early, intermediate and late - are transcribed by the viral RNA polymerase compex []. This complex is composed of nine distinct subunits which total more than 500kDa in mass. The two largest subunits (147 and 136kDa) are homologous to the largest subunits of eukaryotic and prokaryotic RNA polymerases and, like them, are thought to form a claw-shaped structure whose cleft is the site of template interaction and phosphodiester bond formation. While the smaller subunits of poxvirus RNA polymerase show much less similarity, if any, to the smaller subunits of the eukaryotic and prokaryotic enzymes, it is thought that they may play a similar role in interacting with transcription factors. The 132kDa subunit is the second largest subunit of the poxvirus DNA dependent RNA polymerase and shows structural similarity to the second-largest RNA polymerase subunits of eubacteria, archaebacteria, and eukaryotes.
Probab=22.73 E-value=76 Score=14.79 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=11.0
Q ss_pred CcCCChHHHHHHHHHH
Q psy9733 27 WHNPSFPAEFAMYLNY 42 (86)
Q Consensus 27 ~l~~~~P~ef~~~~~~ 42 (86)
.||-++|.|..-..+.
T Consensus 6 ~Lsydmp~ei~ylvna 21 (33)
T PF12415_consen 6 SLSYDMPPEIIYLVNA 21 (33)
T ss_pred hhccCCCHHHHHHHHH
Confidence 4678888877665544
No 277
>PF04217 DUF412: Protein of unknown function, DUF412; InterPro: IPR007334 This family consists of bacterial uncharacterised proteins.
Probab=22.69 E-value=2.1e+02 Score=17.94 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCC-----CCCCCChHHHHHHHHHHHHHcCC
Q psy9733 35 EFAMYLNYCRGLR-----FEEAPDYMYLRQLFRILFRTLNH 70 (86)
Q Consensus 35 ef~~~~~~i~~L~-----y~~~PdY~~l~~~l~~~~~~~~~ 70 (86)
-|.++.+-+.+-+ -..+|.|.-+-.+|+.++++.+-
T Consensus 98 Wy~ei~~Kl~~~g~~~~~~~~~P~Y~dLA~lL~~Af~~LDk 138 (143)
T PF04217_consen 98 WYHEIRQKLQEQGIALQPVKSKPRYQDLAELLKRAFKQLDK 138 (143)
T ss_pred HHHHHHHHHHHcCCccCCCCCCCCHHHHHHHHHHHHHHhHH
Confidence 3444444444333 34779999999999999988653
No 278
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=22.35 E-value=1.6e+02 Score=17.53 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=21.7
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 35 EFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 35 ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
.+..+++-+....-.+.|||..+...+..+
T Consensus 142 rY~lll~~llk~t~~~~~d~~~L~~a~~~i 171 (180)
T PF00621_consen 142 RYPLLLKRLLKNTPPDHPDYKSLQKALDQI 171 (180)
T ss_dssp HHHHHHHHHHHTSSTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHH
Confidence 455555556666668999999988887665
No 279
>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a
Probab=22.23 E-value=1.8e+02 Score=18.22 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCh
Q psy9733 33 PAEFAMYLNYCRGLRFEEAPDY 54 (86)
Q Consensus 33 P~ef~~~~~~i~~L~y~~~PdY 54 (86)
+.++.+++.-+-+....++|.-
T Consensus 226 ~~~~~~~i~~~l~~~P~~Rps~ 247 (256)
T cd06612 226 SPEFNDFVKKCLVKDPEERPSA 247 (256)
T ss_pred CHHHHHHHHHHHhcChhhCcCH
Confidence 3455555555555555555553
No 280
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=21.85 E-value=2e+02 Score=17.38 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCCCCCCChHHHHHHHHHHHH
Q psy9733 36 FAMYLNYCRGLRFEEAPDYMYLRQLFRILFR 66 (86)
Q Consensus 36 f~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~ 66 (86)
+..+++-+.+-.-.+.|||..+...+..+-.
T Consensus 143 Y~lll~~l~k~t~~~~~d~~~l~~a~~~~~~ 173 (180)
T smart00325 143 YPLLLKELLKHTPEDHEDREDLKKALKAIKE 173 (180)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 3333444555555578999999988876643
No 281
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=21.66 E-value=2.7e+02 Score=18.81 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCC
Q psy9733 31 SFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNH 70 (86)
Q Consensus 31 ~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~~ 70 (86)
.+-.++..+.+-.+.|.....++++.+++.+.++++.++.
T Consensus 45 ~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~~~~~~~ 84 (286)
T PRK06680 45 DLDRHLARLFRSLGEIRIAPPMTRAELVEVLRELIRRNRV 84 (286)
T ss_pred chHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 3467889999999999998888999999999999987654
No 282
>PRK01816 hypothetical protein; Provisional
Probab=21.58 E-value=1.5e+02 Score=18.58 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=20.2
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCC
Q psy9733 48 FEEAPDYMYLRQLFRILFRTLNHQ 71 (86)
Q Consensus 48 y~~~PdY~~l~~~l~~~~~~~~~~ 71 (86)
-..+|.|.-+-.+|+.++++.+-+
T Consensus 115 ~~~~P~Y~dLA~lLk~Af~~ld~~ 138 (143)
T PRK01816 115 VEGKPTYQALADLLKRAFKQLDKT 138 (143)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCHH
Confidence 357899999999999999987543
No 283
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=21.42 E-value=1.8e+02 Score=22.95 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=18.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHHc
Q psy9733 46 LRFEEAPDYMYLRQLFRILFRTL 68 (86)
Q Consensus 46 L~y~~~PdY~~l~~~l~~~~~~~ 68 (86)
|...++|||+.+-++-.+...+.
T Consensus 555 ~eG~~kPdY~~cV~I~T~aAlke 577 (697)
T TIGR01104 555 MEGTAKPDYATCVKISTDASIKE 577 (697)
T ss_pred ccCCCCCCcHHHHHHHHHHHHHh
Confidence 35789999999999887776553
No 284
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=21.37 E-value=1.6e+02 Score=18.95 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=28.9
Q ss_pred CChHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q psy9733 30 PSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRIL 64 (86)
Q Consensus 30 ~~~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~ 64 (86)
.++|.++.+++.-+-+...+++|....+...|..+
T Consensus 249 ~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~ 283 (284)
T cd05081 249 PGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAI 283 (284)
T ss_pred CCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence 45678899999988888999999998888887653
No 285
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=21.35 E-value=1.1e+02 Score=14.63 Aligned_cols=16 Identities=6% Similarity=-0.162 Sum_probs=6.8
Q ss_pred CCCChHHHHHHHHHHH
Q psy9733 50 EAPDYMYLRQLFRILF 65 (86)
Q Consensus 50 ~~PdY~~l~~~l~~~~ 65 (86)
+..+-..+.+.+..++
T Consensus 17 ~~~~~~~v~~~v~~Ll 32 (47)
T PF02671_consen 17 GRISRSEVIEEVSELL 32 (47)
T ss_dssp TCSCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHH
Confidence 3344444444444433
No 286
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=21.11 E-value=1.2e+02 Score=24.02 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=18.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHHc
Q psy9733 46 LRFEEAPDYMYLRQLFRILFRTL 68 (86)
Q Consensus 46 L~y~~~PdY~~l~~~l~~~~~~~ 68 (86)
|...++|||+.+-++-.+...+.
T Consensus 587 ~eG~~kPdY~~cV~I~T~aAlre 609 (730)
T PLN02277 587 MDYKEKPDYGRCVAIVASAALRE 609 (730)
T ss_pred ccCCCCCChHHHHHHHHHHHHHh
Confidence 35789999999999887766553
No 287
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=20.96 E-value=1.9e+02 Score=23.12 Aligned_cols=22 Identities=14% Similarity=-0.041 Sum_probs=17.8
Q ss_pred CCCCCCChHHHHHHHHHHHHHc
Q psy9733 47 RFEEAPDYMYLRQLFRILFRTL 68 (86)
Q Consensus 47 ~y~~~PdY~~l~~~l~~~~~~~ 68 (86)
...++|||+.+-++..+...+.
T Consensus 619 eG~~kPDY~~cV~I~T~aAlke 640 (765)
T PLN02255 619 EGTAKPDYATCVKISTDASIKE 640 (765)
T ss_pred cCCCCCChHHHHHHHHHHHHHh
Confidence 6789999999999887765543
No 288
>PF13048 DUF3908: Protein of unknown function (DUF3908)
Probab=20.78 E-value=1.9e+02 Score=17.71 Aligned_cols=33 Identities=21% Similarity=0.546 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcC
Q psy9733 36 FAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLN 69 (86)
Q Consensus 36 f~~~~~~i~~L~y~~~PdY~~l~~~l~~~~~~~~ 69 (86)
|.++-++|.++.+.+.-+| .+.++++.+..-..
T Consensus 2 ~~~~~~~i~~~~~~~~~~~-k~~~~~kkv~~~Ld 34 (127)
T PF13048_consen 2 YEEFKRWIKSSNFRDEEDY-KLRELLKKVCELLD 34 (127)
T ss_pred hHHHHHHHHhccCCchhhh-HHHHHHHHHHhhcC
Confidence 4567888999999998899 89999988887543
No 289
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.40 E-value=1.2e+02 Score=16.49 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=17.9
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCC
Q psy9733 50 EAPDYMYLRQLFRILFRTLNHQYD 73 (86)
Q Consensus 50 ~~PdY~~l~~~l~~~~~~~~~~~~ 73 (86)
+.-+|..|..+-+-+.++.+++++
T Consensus 34 d~~~~edLtdiy~mvkkkenfSps 57 (71)
T COG4840 34 DNANYEDLTDIYDMVKKKENFSPS 57 (71)
T ss_pred ccccHHHHHHHHHHHHHhccCCHH
Confidence 445788888888888888777653
No 290
>PF08958 DUF1871: Domain of unknown function (DUF1871); InterPro: IPR015053 This set of hypothetical proteins is produced by prokaryotes pertaining to the Bacillus genus. ; PDB: 1U84_A.
Probab=20.32 E-value=1e+02 Score=17.14 Aligned_cols=34 Identities=18% Similarity=0.091 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Q psy9733 32 FPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILF 65 (86)
Q Consensus 32 ~P~ef~~~~~~i~~L~y~~~PdY~~l~~~l~~~~ 65 (86)
-|.++++..+.|=..+|++.+.++.+..+=.+++
T Consensus 36 ~~~~LA~~Iq~If~~SF~e~~~~e~C~~iA~klL 69 (79)
T PF08958_consen 36 DPEELAKKIQSIFEFSFGEWLPIEECEEIAEKLL 69 (79)
T ss_dssp -HHHHHHHHHHHHHHHHSS---HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 4678888888888888999998888876655554
No 291
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=20.16 E-value=46 Score=23.44 Aligned_cols=10 Identities=10% Similarity=0.544 Sum_probs=8.3
Q ss_pred CcccccCCCC
Q psy9733 1 MEADLTWVRE 10 (86)
Q Consensus 1 ~~G~LPW~~~ 10 (86)
|.|.+||++.
T Consensus 132 ~gGg~pWR~q 141 (377)
T COG4833 132 DGGGIPWRKQ 141 (377)
T ss_pred cCCccccccc
Confidence 5799999984
No 292
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=20.09 E-value=2.2e+02 Score=17.20 Aligned_cols=30 Identities=10% Similarity=0.073 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Q psy9733 36 FAMYLNYCRGLRFEEAPDYMYLRQLFRILF 65 (86)
Q Consensus 36 f~~~~~~i~~L~y~~~PdY~~l~~~l~~~~ 65 (86)
+..+++-+-+-.-.+.|||..+...+..+-
T Consensus 145 Y~lLL~~l~k~t~~~~~d~~~l~~a~~~~~ 174 (181)
T cd00160 145 YPLLLKELLKHTPDGHEDREDLKKALEAIK 174 (181)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 333444444555566899999998887654
No 293
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=20.04 E-value=1e+02 Score=17.88 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=11.4
Q ss_pred CCCChHHHHHHHHHHHHHc
Q psy9733 50 EAPDYMYLRQLFRILFRTL 68 (86)
Q Consensus 50 ~~PdY~~l~~~l~~~~~~~ 68 (86)
+..||..+.+.+.+.+...
T Consensus 48 ~tidY~~v~~~i~~~~~~~ 66 (116)
T TIGR00525 48 DTVNYAELYSAIEEIVAEK 66 (116)
T ss_pred hccCHHHHHHHHHHHHhCC
Confidence 3556666666666665543
Done!