RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9733
         (86 letters)



>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino
           acid sequence, binding sites, domain, models, molecular;
           HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
          Length = 364

 Score = 80.2 bits (198), Expect = 8e-20
 Identities = 11/46 (23%), Positives = 19/46 (41%)

Query: 31  SFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLY 76
           + P E A Y+   + L + E P Y  LR +     + +  + D   
Sbjct: 294 NAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKL 339


>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase,
           transferase, ATP- binding, phosphorylation,
           nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB:
           2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
          Length = 330

 Score = 77.4 bits (191), Expect = 6e-19
 Identities = 22/42 (52%), Positives = 25/42 (59%)

Query: 35  EFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLY 76
           E A YL Y R L F E PDY YLR+LF  LF    + +DY Y
Sbjct: 250 EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEY 291


>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor,
           PF670462, transferase-transferase I complex; HET: 0CK;
           1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
          Length = 296

 Score = 77.0 bits (190), Expect = 7e-19
 Identities = 27/46 (58%), Positives = 34/46 (73%)

Query: 31  SFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLY 76
            +P+EFA YLN+CR LRF++ PDY YLRQLFR LF      YDY++
Sbjct: 245 GYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVF 290


>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A
           {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A*
           2csn_A*
          Length = 298

 Score = 75.9 bits (187), Expect = 2e-18
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query: 32  FPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLY 76
           FP EF  Y++Y R L F+  PDY YL+ LF  +   LN   D  +
Sbjct: 249 FPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDENF 293


>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
           transferase; 2.00A {Oryza sativa japonica group}
          Length = 483

 Score = 75.4 bits (185), Expect = 7e-18
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 32  FPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLY 76
           +P EFA Y +YCR LRF++ PDY YL++LFR LF     Q+DY++
Sbjct: 244 YPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGFQFDYVF 288


>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3;
           transferase, pseudo kinase domain, vaccinia related
           kinase, ATP-binding; 2.00A {Homo sapiens}
          Length = 352

 Score = 74.0 bits (182), Expect = 1e-17
 Identities = 12/69 (17%), Positives = 19/69 (27%)

Query: 8   VREEQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRT 67
           + +++     +         H          YL     L +EE P Y  LR     L + 
Sbjct: 278 IMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQD 337

Query: 68  LNHQYDYLY 76
           L        
Sbjct: 338 LRVSPYDPI 346


>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding,
           membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
          Length = 345

 Score = 71.7 bits (176), Expect = 8e-17
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 31  SFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYLYHNNSSSL 83
           S   E A +L     L ++E P+Y  L+++       L    D+     S ++
Sbjct: 293 SSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGIPLG-PLDFSTKGQSINV 344


>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase,
           lipoprotein, PSI-2, protein initiative; 1.90A
           {Bacteroides thetaiotaomicron}
          Length = 469

 Score = 26.1 bits (57), Expect = 1.7
 Identities = 9/48 (18%), Positives = 17/48 (35%)

Query: 28  HNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYL 75
            +   PAE  + +        EE      +R+L+ I   ++      L
Sbjct: 246 GDAYIPAETDVSIRPSWFYHAEEDSRVKSVRELWDIYCTSVGRNSVLL 293


>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1,
           structural genomics, PSI-2, protein structure
           initiative; 2.30A {Vibrio fischeri ES114} SCOP:
           b.82.2.13
          Length = 119

 Score = 23.7 bits (51), Expect = 9.6
 Identities = 6/48 (12%), Positives = 14/48 (29%), Gaps = 7/48 (14%)

Query: 10  EEQIVARGRLVMVAPSYWHNPSFPAEFAMYLN-YCRGLRFEEAPDYMY 56
            + ++  G+     P YWH      +    +N +       +      
Sbjct: 64  IKVVINAGQFATSPPQYWHRIELSDDAQFNINFWS------DQDKSGK 105


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0700    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,416,534
Number of extensions: 71131
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 18
Length of query: 86
Length of database: 6,701,793
Length adjustment: 54
Effective length of query: 32
Effective length of database: 5,194,059
Effective search space: 166209888
Effective search space used: 166209888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.5 bits)