RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9733
         (86 letters)



>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 293

 Score = 54.4 bits (130), Expect = 4e-11
 Identities = 21/66 (31%), Positives = 29/66 (43%)

Query: 11  EQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNH 70
           ++    G      P       FP EF  Y++Y R L F+  PDY YL+ LF  +   LN 
Sbjct: 223 QKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNT 282

Query: 71  QYDYLY 76
             D  +
Sbjct: 283 TEDENF 288


>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 299

 Score = 47.1 bits (111), Expect = 2e-08
 Identities = 29/66 (43%), Positives = 38/66 (57%)

Query: 11  EQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNH 70
           ++        M  P       +P+EFA YLN+CR LRF++ PDY YLRQLFR LF     
Sbjct: 223 QKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGF 282

Query: 71  QYDYLY 76
            YDY++
Sbjct: 283 SYDYVF 288


>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB
          {Vibrio fischeri [TaxId: 668]}
          Length = 96

 Score = 26.2 bits (58), Expect = 0.33
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 5/37 (13%)

Query: 10 EEQIVARGRLVMVAPSYWHN--PSFPAEFAMYLN-YC 43
           + ++  G+     P YWH    S  A+F   +N + 
Sbjct: 60 IKVVINAGQFATSPPQYWHRIELSDDAQF--NINFWS 94


>d1o8ra_ d.234.1.1 (A:) Proguanylin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 94

 Score = 25.2 bits (55), Expect = 0.66
 Identities = 10/36 (27%), Positives = 13/36 (36%)

Query: 1  MEADLTWVREEQIVARGRLVMVAPSYWHNPSFPAEF 36
           E     V + +  A      V P    NP+FP E 
Sbjct: 22 QEPQEPRVGKLRNFAPIPGEPVVPILCSNPNFPEEL 57


>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus
          thermophilus [TaxId: 274]}
          Length = 55

 Score = 23.8 bits (52), Expect = 1.2
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 16 RGRLVMVAPSYWHNPSFPAEFAMYLN 41
           G++V V P Y  N   P   A+   
Sbjct: 15 VGQVVDVKPGYARNYLLPRGLAVLAT 40


>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain
          {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 52

 Score = 23.4 bits (51), Expect = 2.1
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 16 RGRLVMVAPSYWHNPSFPAEFAMYLN 41
          +G +  VA  Y +N  F    A+   
Sbjct: 15 KGEIKNVADGYANNFLFKQGLAIEAT 40


>d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli
           [TaxId: 562]}
          Length = 759

 Score = 24.0 bits (52), Expect = 2.8
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 14/60 (23%)

Query: 11  EQIVARGRLVMVAPSYWHNPSFPAE--------------FAMYLNYCRGLRFEEAPDYMY 56
           EQ  A G++  +A  Y ++ S PA                A+       + F     ++ 
Sbjct: 225 EQHRALGQMKEMAAKYGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLD 284


>d1ixla_ d.38.1.5 (A:) Hypothetical protein PH1136 {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 130

 Score = 23.4 bits (50), Expect = 3.9
 Identities = 5/24 (20%), Positives = 10/24 (41%)

Query: 1   MEADLTWVREEQIVARGRLVMVAP 24
              ++   REE++V  G+      
Sbjct: 101 KIVEVKVYREEEVVLEGKFYCYVL 124


>d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 273

 Score = 22.7 bits (48), Expect = 9.6
 Identities = 5/44 (11%), Positives = 13/44 (29%)

Query: 11  EQIVARGRLVMVAPSYWHNPSFPAEFAMYLNYCRGLRFEEAPDY 54
           +++ A   ++   P  W       +      +     +  A  Y
Sbjct: 89  KKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMY 132


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 354,892
Number of extensions: 14486
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 16
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.0 bits)