BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9737
(368 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3ZY20|SYI_DEHSC Isoleucine--tRNA ligase OS=Dehalococcoides sp. (strain CBDB1)
GN=ileS PE=3 SV=1
Length = 1014
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Query: 215 KSLTKKHFYQKWNTTWSNINPSENKLRRIKSTTTPWKTSSQKA----RLDEVCLMRMRIG 270
+SL + QKW +NPS+ L + TTTPW + A DE ++ M
Sbjct: 216 ESLAQTGLGQKW------VNPSDKPLYLLAWTTTPWTLPANTALAVSATDEYAILDMADY 269
Query: 271 HTKITHSHL--FKREERPICDSC 291
+ + L K E PI C
Sbjct: 270 YMVLAKPRLSSLKLTENPIVGEC 292
>sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease virus GN=gag-pol PE=3 SV=1
Length = 1432
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 179 WCPSHVGISGNDQADAEAKKATSEPIT 205
W P H GI GN + D E +KA PIT
Sbjct: 1057 WVPGHKGIGGNTEVDQEVQKALQGPIT 1083
>sp|Q9GLC0|APOE_TUPGL Apolipoprotein E OS=Tupaia glis GN=APOE PE=2 SV=1
Length = 313
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 102 GDKVRGRRRTVGNEVRGGKYEVGDEVRGGKYEVGDEVRGGKYDCSSFQAISNLYHPNPLV 161
G+++RGR + VG++ R EV ++V + +V ++ + +FQA + PLV
Sbjct: 225 GERLRGRLQEVGSQARDRLDEVREQVEEVRAKVEEQATQMRLQAEAFQARLQSWF-EPLV 283
Query: 162 KEIQ 165
K++Q
Sbjct: 284 KDVQ 287
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 158 NPLVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKATSEPITNHSLLLDEIKSL 217
+PLV++I Q + W P+H GI GN++ D K L L++I+
Sbjct: 1131 SPLVEQIIALMIQKQQIY-LQWVPAHKGIGGNEEIDKLVSKG-----IRRVLFLEKIEEA 1184
Query: 218 TKKHFYQKWNTTWSNI 233
+KH ++++ W N+
Sbjct: 1185 QEKH--ERYHNNWKNL 1198
>sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate Z2/CDC-Z34) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 160 LVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKATSEPITNHSLLLDEIKSLTK 219
LV +I E+ + + W P+H GI GN+Q D K S+ I L LD I +
Sbjct: 1105 LVSQIIEQLIKKEKVY-LAWVPAHKGIGGNEQVD----KLVSQGI-RKVLFLDGIDKAQE 1158
Query: 220 KH--FYQKWNTTWSNIN 234
+H ++ W S+ N
Sbjct: 1159 EHEKYHNNWRAMASDFN 1175
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 160 LVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKATSEPITNHSLLLDEIKSLTK 219
LV +I E+ + + W P+H GI GN+Q D K S+ I L LD I +
Sbjct: 1104 LVNQIIEQLIKKEKVY-LAWVPAHKGIGGNEQVD----KLVSQGI-RKVLFLDGIDKAQE 1157
Query: 220 KH--FYQKWNTTWSNIN 234
+H ++ W S+ N
Sbjct: 1158 EHEKYHNNWRAMASDFN 1174
>sp|P18802|POL_HV1ND Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate NDK) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 160 LVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKATSEPITNHSLLLDEIKSLTK 219
LV +I E+ + + W P+H GI GN+Q D K S+ I L LD I +
Sbjct: 1101 LVSQIIEQLIKKEKVY-LAWVPAHKGIGGNEQVD----KLVSQGI-RKVLFLDGIDKAQE 1154
Query: 220 KH--FYQKWNTTWSNIN 234
+H ++ W S+ N
Sbjct: 1155 EHEKYHNNWRAMASDFN 1171
>sp|Q9Q720|POL_HV1V9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag-pol PE=3 SV=3
Length = 1436
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 175 FKFLWCPSHVGISGNDQADAEAKKATSEPITNHSLLLDEIKSLTKKH--FYQKWNTTWSN 232
F W P+H GI GN+Q D K S I L LD I +H ++ W S+
Sbjct: 1119 FYLSWVPAHKGIGGNEQVD----KLVSSGI-RKVLFLDGIDKAQVQHEKYHSNWRAMASD 1173
Query: 233 IN 234
N
Sbjct: 1174 FN 1175
>sp|P35963|POL_HV1Y2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate YU-2) GN=gag-pol PE=1 SV=3
Length = 1435
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 160 LVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKATSEPITNHSLLLDEIKSLTK 219
LV +I E+ + + W P+H GI GN+Q D K S I L LD I +
Sbjct: 1104 LVSQIIEQLIKKEKVY-LAWVPAHKGIGGNEQVD----KLVSAGI-RKVLFLDGIDKAQE 1157
Query: 220 KH--FYQKWNTTWSNIN 234
+H ++ W S+ N
Sbjct: 1158 EHEKYHSNWRAMASDFN 1174
>sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 160 LVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKATSEPITNHSLLLDEIKSLTK 219
LV +I E+ + + W P+H GI GN+Q D K S I L LD I +
Sbjct: 1104 LVSQIIEQLIKKEKVY-LAWVPAHKGIGGNEQVD----KLVSAGI-RKVLFLDGIDKAQE 1157
Query: 220 KHFYQKWNTTW 230
+H +K++T W
Sbjct: 1158 EH--EKYHTNW 1166
>sp|P20892|POL_HV1OY Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 31.6 bits (70), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 160 LVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKATSEPITNHSLLLDEIKSLTK 219
LV +I E+ + + W P+H GI GN+Q D K S I L LD I +
Sbjct: 1103 LVSQIIEQLIKKEKVY-LAWVPAHKGIGGNEQVD----KLVSAGI-RKVLFLDGIDKAQE 1156
Query: 220 KH--FYQKWNTTWSNIN 234
+H ++ W S+ N
Sbjct: 1157 EHEKYHSNWRAMASDFN 1173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,033,385
Number of Sequences: 539616
Number of extensions: 6962247
Number of successful extensions: 12873
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 12802
Number of HSP's gapped (non-prelim): 81
length of query: 368
length of database: 191,569,459
effective HSP length: 119
effective length of query: 249
effective length of database: 127,355,155
effective search space: 31711433595
effective search space used: 31711433595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)