Query psy9737
Match_columns 368
No_of_seqs 207 out of 944
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 18:15:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00075 RNase_H: RNase H; In 98.9 7.7E-10 1.7E-14 92.9 4.6 64 136-200 58-131 (132)
2 PRK08719 ribonuclease H; Revie 98.8 1.1E-08 2.4E-13 90.8 6.6 60 140-201 71-146 (147)
3 PRK00203 rnhA ribonuclease H; 98.8 9.6E-09 2.1E-13 90.5 5.4 66 137-204 63-144 (150)
4 PRK06548 ribonuclease H; Provi 98.7 3E-08 6.5E-13 89.7 6.2 67 137-205 63-145 (161)
5 cd06222 RnaseH RNase H (RNase 98.4 1.3E-06 2.9E-11 69.7 7.2 67 133-200 59-130 (130)
6 COG0328 RnhA Ribonuclease HI [ 98.2 2.3E-06 5E-11 77.1 5.0 43 160-203 104-146 (154)
7 KOG3752|consensus 97.6 7.7E-05 1.7E-09 75.3 5.4 42 161-202 323-365 (371)
8 PF13456 RVT_3: Reverse transc 96.2 0.0091 2E-07 46.1 5.1 60 136-200 22-85 (87)
9 PRK13907 rnhA ribonuclease H; 96.1 0.014 3E-07 49.6 5.9 61 137-202 63-127 (128)
10 PF13966 zf-RVT: zinc-binding 95.6 0.0074 1.6E-07 48.4 2.1 41 268-308 39-83 (86)
11 PRK07708 hypothetical protein; 94.2 0.11 2.4E-06 49.4 6.3 65 137-205 142-211 (219)
12 PRK07238 bifunctional RNase H/ 91.4 0.42 9.1E-06 48.0 6.2 63 137-204 67-134 (372)
13 PF08734 GYD: GYD domain; Int 42.0 1.8E+02 0.0039 23.7 7.9 77 139-218 3-90 (91)
14 PF15322 PMSI1: Protein missin 29.2 58 0.0013 32.7 3.4 82 261-343 213-304 (311)
15 PF08240 ADH_N: Alcohol dehydr 24.0 42 0.0009 27.3 1.2 28 45-74 34-61 (109)
16 PF13917 zf-CCHC_3: Zinc knuck 22.7 67 0.0015 23.2 1.9 29 285-317 4-32 (42)
17 KOG1994|consensus 22.7 32 0.00069 33.6 0.3 32 263-308 231-263 (268)
No 1
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=98.94 E-value=7.7e-10 Score=92.94 Aligned_cols=64 Identities=30% Similarity=0.465 Sum_probs=52.8
Q ss_pred ceeeeccccHHHHHHhHc-----cCC--C-C-HHHHHHHHHHHcCCCeEEEEEeccCCCC-CcChHHHHHHhhhc
Q psy9737 136 DEVRGGKYDCSSFQAISN-----LYH--P-N-PLVKEIQERSSNSQISFKFLWCPSHVGI-SGNDQADAEAKKAT 200 (368)
Q Consensus 136 ~~v~~~s~SlSAL~aI~n-----p~~--~-s-~ii~~I~~~l~~~g~~V~l~WVPgH~gI-~GNE~AD~lAK~Aa 200 (368)
..+...+||.+++..|.. .+. . . ++..+|.+++ ..+..|.|.|||||+|+ .|||.||+|||+|+
T Consensus 58 ~~v~I~tDS~~v~~~l~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~a~ 131 (132)
T PF00075_consen 58 RKVTIYTDSQYVLNALNKWLHGNGWKKTSNGRPIKNEIWELL-SRGIKVRFRWVPGHSGVPQGNERADRLAKEAA 131 (132)
T ss_dssp SEEEEEES-HHHHHHHHTHHHHTTSBSCTSSSBHTHHHHHHH-HHSSEEEEEESSSSSSSHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHhccccccccccccccchhheeecc-ccceEEeeeeccCcCCCchhHHHHHHHHHHhc
Confidence 778889999999997766 332 1 2 4778898888 44899999999999999 69999999999986
No 2
>PRK08719 ribonuclease H; Reviewed
Probab=98.78 E-value=1.1e-08 Score=90.78 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=43.1
Q ss_pred eccccHHHHHHh--------HccCCCC--------HHHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhhcC
Q psy9737 140 GGKYDCSSFQAI--------SNLYHPN--------PLVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKATS 201 (368)
Q Consensus 140 ~~s~SlSAL~aI--------~np~~~s--------~ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~Aa~ 201 (368)
..+||+-++.+| +|.|..+ ++.+.|.+++. ...|+|.|||||+|++|||.||+||++|+.
T Consensus 71 i~tDS~yvi~~i~~~~~~W~~~~w~~s~g~~v~n~dl~~~i~~l~~--~~~i~~~~VkgH~g~~~Ne~aD~lA~~a~~ 146 (147)
T PRK08719 71 IYSDSDYCVRGFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDELRA--RKYVEVEKVTAHSGIEGNEAADMLAQAAAE 146 (147)
T ss_pred EEechHHHHHHHHHHHHHHHhCCcccCCCcccccHHHHHHHHHHhC--CCcEEEEEecCCCCChhHHHHHHHHHHHhh
Confidence 445565555555 4545433 24555555544 467999999999999999999999999975
No 3
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=98.76 E-value=9.6e-09 Score=90.55 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=49.1
Q ss_pred eeeeccccHHHHHHhHc--------cCCC--------CHHHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhhc
Q psy9737 137 EVRGGKYDCSSFQAISN--------LYHP--------NPLVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKAT 200 (368)
Q Consensus 137 ~v~~~s~SlSAL~aI~n--------p~~~--------s~ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~Aa 200 (368)
.+...+||..++.+|.. .+.. .++++.|.+++.. ..|.|.|||||+|++||+.||+|||+|+
T Consensus 63 ~v~I~tDS~yvi~~i~~w~~~Wk~~~~~~~~g~~v~n~dl~~~i~~l~~~--~~v~~~wV~~H~~~~~N~~AD~lA~~a~ 140 (150)
T PRK00203 63 EVTLYTDSQYVRQGITEWIHGWKKNGWKTADKKPVKNVDLWQRLDAALKR--HQIKWHWVKGHAGHPENERCDELARAGA 140 (150)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHHcCCcccCCCccccHHHHHHHHHHhcc--CceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 46777777777666653 2322 1356777776643 7899999999999999999999999998
Q ss_pred CCCC
Q psy9737 201 SEPI 204 (368)
Q Consensus 201 ~~~~ 204 (368)
....
T Consensus 141 ~~~~ 144 (150)
T PRK00203 141 EEAT 144 (150)
T ss_pred HHhh
Confidence 7543
No 4
>PRK06548 ribonuclease H; Provisional
Probab=98.68 E-value=3e-08 Score=89.68 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=48.4
Q ss_pred eeeeccccHHHHHHhH--------ccCC-CC-------HHHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhhc
Q psy9737 137 EVRGGKYDCSSFQAIS--------NLYH-PN-------PLVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKAT 200 (368)
Q Consensus 137 ~v~~~s~SlSAL~aI~--------np~~-~s-------~ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~Aa 200 (368)
.|+..+||+-++.++. |.|. ++ +|+++|..++.. ..|+|.|||||+|++|||.||+||++|+
T Consensus 63 ~v~I~TDS~yvi~~i~~W~~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~--~~v~~~wVkgHsg~~gNe~aD~LA~~aa 140 (161)
T PRK06548 63 PILILSDSKYVINSLTKWVYSWKMRKWRKADGKPVLNQEIIQEIDSLMEN--RNIRMSWVNAHTGHPLNEAADSLARQAA 140 (161)
T ss_pred eEEEEeChHHHHHHHHHHHHHHHHCCCcccCCCccccHHHHHHHHHHHhc--CceEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3566666666666665 1222 21 367777777654 4799999999999999999999999998
Q ss_pred CCCCC
Q psy9737 201 SEPIT 205 (368)
Q Consensus 201 ~~~~~ 205 (368)
.....
T Consensus 141 ~~~~~ 145 (161)
T PRK06548 141 NNFST 145 (161)
T ss_pred HHhcc
Confidence 65443
No 5
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=98.36 E-value=1.3e-06 Score=69.67 Aligned_cols=67 Identities=28% Similarity=0.380 Sum_probs=53.5
Q ss_pred eccceeeeccccHHHHHHhHccCC-CC----HHHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhhc
Q psy9737 133 EVGDEVRGGKYDCSSFQAISNLYH-PN----PLVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKAT 200 (368)
Q Consensus 133 ~~~~~v~~~s~SlSAL~aI~np~~-~s----~ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~Aa 200 (368)
.....+...+||..++..+.+... .. .++..|++.+ .....+.|.|||+|+++..|+.||.+||+|.
T Consensus 59 ~~~~~i~i~~Ds~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~~v~~h~~~~~n~~ad~la~~~~ 130 (130)
T cd06222 59 LGGKKVNIYTDSQYVINALTGWYEGKPVKNVDLWQRLLALL-KRFHKVRFEWVPGHSGIEGNERADALAKEAA 130 (130)
T ss_pred CCCceEEEEECHHHHHHHhhccccCCChhhHHHHHHHHHHH-hCCCeEEEEEcCCCCCCcchHHHHHHHHhhC
Confidence 445778888999999999987643 11 2566666665 4578899999999999999999999999874
No 6
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=98.16 E-value=2.3e-06 Score=77.11 Aligned_cols=43 Identities=26% Similarity=0.383 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhhcCCC
Q psy9737 160 LVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKATSEP 203 (368)
Q Consensus 160 ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~Aa~~~ 203 (368)
+.+++.+++.+ -..|.+.|||||+|.++||+||+||+.|+...
T Consensus 104 l~~~~~~~~~~-~~~v~~~WVkgH~g~~~NeraD~LA~~~~~~~ 146 (154)
T COG0328 104 LWEELDELLKR-HELVFWEWVKGHAGHPENERADQLAREAARAA 146 (154)
T ss_pred HHHHHHHHHhh-CCeEEEEEeeCCCCChHHHHHHHHHHHHHHhh
Confidence 45666665533 44899999999999999999999999998765
No 7
>KOG3752|consensus
Probab=97.60 E-value=7.7e-05 Score=75.32 Aligned_cols=42 Identities=31% Similarity=0.415 Sum_probs=34.9
Q ss_pred HHHHHHHHHc-CCCeEEEEEeccCCCCCcChHHHHHHhhhcCC
Q psy9737 161 VKEIQERSSN-SQISFKFLWCPSHVGISGNDQADAEAKKATSE 202 (368)
Q Consensus 161 i~~I~~~l~~-~g~~V~l~WVPgH~gI~GNE~AD~lAK~Aa~~ 202 (368)
...+.++++. ++..|++.|||||.||.|||+||.+|++.+..
T Consensus 323 ~~e~~~l~q~~~~~~vq~~~V~Gh~gi~gne~Ad~lARkgs~~ 365 (371)
T KOG3752|consen 323 FNELDELEQEISNKKVQQEYVGGHSGILGNEMADALARKGSTL 365 (371)
T ss_pred HHHHHHHHhhhccCceEEEEecCcCCcchHHHHHHHHhhhhhh
Confidence 4555566655 67999999999999999999999999988543
No 8
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=96.24 E-value=0.0091 Score=46.12 Aligned_cols=60 Identities=22% Similarity=0.150 Sum_probs=45.1
Q ss_pred ceeeeccccHHHHHHhHccCCC-C---HHHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhhc
Q psy9737 136 DEVRGGKYDCSSFQAISNLYHP-N---PLVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKAT 200 (368)
Q Consensus 136 ~~v~~~s~SlSAL~aI~np~~~-s---~ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~Aa 200 (368)
+.+..-+||+.++..|.+.... + .++..|+.++.. -..+.|.||| =+.|..||.|||.|.
T Consensus 22 ~~i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~i~----r~~N~~A~~LA~~a~ 85 (87)
T PF13456_consen 22 RKIIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDR-FWNVSVSHIP----REQNKVADALAKFAL 85 (87)
T ss_dssp SCEEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCC-CSCEEEEE------GGGSHHHHHHHHHHH
T ss_pred CEEEEEecCccccccccccccccccccccchhhhhhhcc-ccceEEEEEC----hHHhHHHHHHHHHHh
Confidence 5788889999999999776432 2 367777777655 7789999998 679999999999885
No 9
>PRK13907 rnhA ribonuclease H; Provisional
Probab=96.09 E-value=0.014 Score=49.62 Aligned_cols=61 Identities=31% Similarity=0.271 Sum_probs=45.7
Q ss_pred eeeeccccHHHHHHhHccCCCC----HHHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhhcCC
Q psy9737 137 EVRGGKYDCSSFQAISNLYHPN----PLVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKATSE 202 (368)
Q Consensus 137 ~v~~~s~SlSAL~aI~np~~~s----~ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~Aa~~ 202 (368)
.+..-+||+-.+..+.+.+..+ +++++|..++. .-..+.|.|||. +.|+.||.+|+.|...
T Consensus 63 ~v~i~sDS~~vi~~~~~~~~~~~~~~~l~~~~~~l~~-~f~~~~~~~v~r----~~N~~Ad~LA~~a~~~ 127 (128)
T PRK13907 63 IVSFRTDSQLVERAVEKEYAKNKMFAPLLEEALQYIK-SFDLFFIKWIPS----SQNKVADELARKAILQ 127 (128)
T ss_pred EEEEEechHHHHHHHhHHHhcChhHHHHHHHHHHHHh-cCCceEEEEcCc----hhchhHHHHHHHHHhc
Confidence 4777788888888887655332 36677766664 355777899998 5999999999998753
No 10
>PF13966 zf-RVT: zinc-binding in reverse transcriptase
Probab=95.59 E-value=0.0074 Score=48.42 Aligned_cols=41 Identities=29% Similarity=0.556 Sum_probs=31.3
Q ss_pred ccCccccc---cccccCCCCCCCCCCCCC-CCCcceecccccccc
Q psy9737 268 RIGHTKIT---HSHLFKREERPICDSCHE-PLTVEHIILHCNKLR 308 (368)
Q Consensus 268 RTGHg~Ln---hLhRi~~~dsp~C~~CG~-~ETVeHIL~eCPry~ 308 (368)
+.-|..+. -+.+.+...++.|..|+. .||++|+|++||...
T Consensus 39 ~~~~~rL~t~~~l~~r~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~ 83 (86)
T PF13966_consen 39 RALHNRLPTKDNLQRRGIQVDPICPLCGNEEETIEHLFFHCPFAR 83 (86)
T ss_pred eeccccchhhhhhhccCCccCCccccCCCccccccceeccCcCcc
Confidence 34455552 366777788899999997 699999999999654
No 11
>PRK07708 hypothetical protein; Validated
Probab=94.21 E-value=0.11 Score=49.36 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=48.4
Q ss_pred eeeeccccHHHHHHhHccCCC-CH----HHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhhcCCCCC
Q psy9737 137 EVRGGKYDCSSFQAISNLYHP-NP----LVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKATSEPIT 205 (368)
Q Consensus 137 ~v~~~s~SlSAL~aI~np~~~-s~----ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~Aa~~~~~ 205 (368)
.|..-+||+-++..+.+.|.. ++ +...|.+++......+.|.|||- .-|+.||+||+.|......
T Consensus 142 ~V~I~~DSqlVi~qi~g~wk~~~~~l~~y~~~i~~l~~~~~l~~~~~~VpR----~~N~~AD~LAk~Al~~~~~ 211 (219)
T PRK07708 142 PVTFRGDSQVVLNQLAGEWPCYDEHLNHWLDRIEQKLKQLKLTPVYEPISR----KQNKEADQLATQALEGTVI 211 (219)
T ss_pred eEEEEeccHHHHHHhCCCceeCChhHHHHHHHHHHHHhhCCceEEEEECCc----hhhhHHHHHHHHHHhcCCC
Confidence 377888999999999877643 32 45556666666566788899975 5699999999999985443
No 12
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=91.40 E-value=0.42 Score=47.96 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=46.7
Q ss_pred eeeeccccHHHHHHhHccCC-CCH----HHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhhcCCCC
Q psy9737 137 EVRGGKYDCSSFQAISNLYH-PNP----LVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKATSEPI 204 (368)
Q Consensus 137 ~v~~~s~SlSAL~aI~np~~-~s~----ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~Aa~~~~ 204 (368)
.+...+||.-++..+.+.+. .+. ++.+|+++++ .-..+.|.|||. ..|+.||.||+.|.....
T Consensus 67 ~v~i~~DS~lvi~~i~~~~~~~~~~l~~~~~~i~~l~~-~f~~~~i~~v~r----~~N~~AD~LA~~a~~~~~ 134 (372)
T PRK07238 67 EVEVRMDSKLVVEQMSGRWKVKHPDMKPLAAQARELAS-QFGRVTYTWIPR----ARNAHADRLANEAMDAAA 134 (372)
T ss_pred eEEEEeCcHHHHHHhCCCCccCChHHHHHHHHHHHHHh-cCCceEEEECCc----hhhhHHHHHHHHHHHhhc
Confidence 47778889999998877653 332 4455666553 346799999997 689999999999876544
No 13
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=42.00 E-value=1.8e+02 Score=23.74 Aligned_cols=77 Identities=13% Similarity=0.152 Sum_probs=52.2
Q ss_pred eeccccHHHHHHhHccCCCCHHHHHHHHHHHcCCCeEE-EEEeccCCC------CCcChHHHHHHhhhcCCCCC----CC
Q psy9737 139 RGGKYDCSSFQAISNLYHPNPLVKEIQERSSNSQISFK-FLWCPSHVG------ISGNDQADAEAKKATSEPIT----NH 207 (368)
Q Consensus 139 ~~~s~SlSAL~aI~np~~~s~ii~~I~~~l~~~g~~V~-l~WVPgH~g------I~GNE~AD~lAK~Aa~~~~~----~~ 207 (368)
....|+-.+++++.+. ......+.+++.+.|.++. +.|+.|.-+ .|.++.|=+++-.....+.. ..
T Consensus 3 ~l~~~T~~g~~~~~~~---~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~ 79 (91)
T PF08734_consen 3 ILARYTPEGAKGIKDS---PDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLR 79 (91)
T ss_pred EEEEeCHHHHHHHhhc---HHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEe
Confidence 4567788888888773 5566777777777777665 999999977 47777777666555555433 33
Q ss_pred ccchHHHHHHH
Q psy9737 208 SLLLDEIKSLT 218 (368)
Q Consensus 208 ~~s~a~lKr~i 218 (368)
.++..++.+.+
T Consensus 80 a~~~~e~~~~~ 90 (91)
T PF08734_consen 80 AFPWDEFDEIV 90 (91)
T ss_pred cCCHHHHHHHh
Confidence 45566665544
No 14
>PF15322 PMSI1: Protein missing in infertile sperm 1, putative
Probab=29.17 E-value=58 Score=32.69 Aligned_cols=82 Identities=18% Similarity=0.141 Sum_probs=40.4
Q ss_pred HHhhhhhccCcccccc-ccccCCC------CCCCCCC--CCCCCCcceecccc-cccccCCCCCCCCCcCCccccccCCH
Q psy9737 261 EVCLMRMRIGHTKITH-SHLFKRE------ERPICDS--CHEPLTVEHIILHC-NKLRFRPPSFLEESTQDILSDQYGQL 330 (368)
Q Consensus 261 ~siLtQLRTGHg~Lnh-LhRi~~~------dsp~C~~--CG~~ETVeHIL~eC-Pry~~~R~~l~~~~~~~~Ls~lLGt~ 330 (368)
...|.||||-|-..+| ....++. |++.|+. |-...|..-. -.- |.....|..+..+++...|.|-=--.
T Consensus 213 vGALsqLrTehrPCtY~~C~Cnr~~eECPLD~~lc~d~sc~~~~~~~~~-~~~~~~~~r~~P~~p~~sps~alaFWkrVR 291 (311)
T PF15322_consen 213 VGALSQLRTEHRPCTYQQCPCNREREECPLDSSLCPDTSCASQTTTTTT-TPMPPLHLRLRPSLPPPSPSPALAFWKRVR 291 (311)
T ss_pred cchhhhhhhccCCcccccCCcccccccCCCCCCCCCCcccccccccccC-CCCCccccccCCCCCCCCCchHHHHHHHHH
Confidence 3478999999999985 3333322 4444541 3322111100 011 12222333444445555555544445
Q ss_pred HHHHHHHHHhhhh
Q psy9737 331 DTVNNLNDSLTDR 343 (368)
Q Consensus 331 ~gi~~L~~~i~~~ 343 (368)
.|++.+-..|...
T Consensus 292 ~GLEdiWnsLssv 304 (311)
T PF15322_consen 292 IGLEDIWNSLSSV 304 (311)
T ss_pred hhHHHHHHHHHHH
Confidence 6677766666554
No 15
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=24.04 E-value=42 Score=27.32 Aligned_cols=28 Identities=39% Similarity=0.572 Sum_probs=17.5
Q ss_pred ccCccccceeeeecceecCcceecCccccc
Q psy9737 45 LVGDEVRGVEYEVGNEVRGGKYEVGDEVRG 74 (368)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (368)
..|-|.-|+-.++|..|.. |.+||.|-.
T Consensus 34 i~GhE~~G~V~~vG~~v~~--~~~Gd~V~~ 61 (109)
T PF08240_consen 34 ILGHEGVGVVVAVGPGVTD--FKVGDRVVV 61 (109)
T ss_dssp ES-SEEEEEEEEESTTTTS--SGTT-EEEE
T ss_pred ccccceeeeeeeecccccc--ccccceeee
Confidence 3567777777777776665 667776654
No 16
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=22.74 E-value=67 Score=23.24 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCCcceecccccccccCCCCCCCC
Q psy9737 285 RPICDSCHEPLTVEHIILHCNKLRFRPPSFLEE 317 (368)
Q Consensus 285 sp~C~~CG~~ETVeHIL~eCPry~~~R~~l~~~ 317 (368)
...|..|+. ..|+-++||. ...|.-...|
T Consensus 4 ~~~CqkC~~---~GH~tyeC~~-~~~r~y~~Rp 32 (42)
T PF13917_consen 4 RVRCQKCGQ---KGHWTYECPN-KNERKYTSRP 32 (42)
T ss_pred CCcCcccCC---CCcchhhCCC-CCCcccccCC
Confidence 467998986 5799999997 3344333333
No 17
>KOG1994|consensus
Probab=22.69 E-value=32 Score=33.61 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=24.4
Q ss_pred hhhhhccCccccccccccCCCCCCCCCCCCCC-CCcceecccccccc
Q psy9737 263 CLMRMRIGHTKITHSHLFKREERPICDSCHEP-LTVEHIILHCNKLR 308 (368)
Q Consensus 263 iLtQLRTGHg~LnhLhRi~~~dsp~C~~CG~~-ETVeHIL~eCPry~ 308 (368)
++.-||++|- .|-+||.. +|.+-++-+||-..
T Consensus 231 in~~LR~eh~--------------YC~fCG~~y~~~edl~ehCPGvn 263 (268)
T KOG1994|consen 231 INIFLRSEHY--------------YCFFCGIKYKDEEDLYEHCPGVN 263 (268)
T ss_pred HHHHHhccce--------------EEEEeccccCCHHHHHHhCCCCC
Confidence 4556777764 47789987 79999999999654
Done!