Query psy9737
Match_columns 368
No_of_seqs 207 out of 944
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 18:15:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 98.9 1.2E-09 4.1E-14 94.6 6.6 66 136-203 71-152 (154)
2 3h08_A RNH (ribonuclease H); R 98.9 6.9E-10 2.4E-14 95.1 5.0 65 136-202 63-144 (146)
3 1jl1_A Ribonuclease HI; RNAse 98.9 1.2E-09 4E-14 95.2 5.5 68 136-205 63-146 (155)
4 3qio_A GAG-POL polyprotein; RN 98.9 1.5E-09 5.3E-14 94.7 6.2 66 136-202 66-147 (150)
5 2e4l_A Ribonuclease HI, RNAse 98.9 2E-09 6.7E-14 94.2 5.9 65 136-202 65-145 (158)
6 1ril_A Ribonuclease H; hydrola 98.8 4.9E-09 1.7E-13 92.6 4.9 67 137-205 68-151 (166)
7 2kq2_A Ribonuclease H-related 98.7 2.3E-09 7.9E-14 92.8 0.8 69 137-205 71-140 (147)
8 3p1g_A Xenotropic murine leuke 98.7 9.1E-09 3.1E-13 91.4 4.4 70 135-205 80-159 (165)
9 2lsn_A Reverse transcriptase; 98.4 2.7E-07 9.3E-12 82.1 5.7 42 159-201 115-162 (165)
10 1mu2_A HIV-2 RT; HIV-2 reverse 98.4 3.7E-07 1.3E-11 94.0 7.4 65 135-200 489-555 (555)
11 2zd1_A Reverse transcriptase/r 98.2 5.4E-07 1.9E-11 92.9 4.8 64 135-199 492-557 (557)
12 2ehg_A Ribonuclease HI; RNAse 97.8 2.1E-05 7.1E-10 67.0 5.2 61 136-202 69-134 (149)
13 3u3g_D Ribonuclease H, RNAse H 97.7 4.6E-05 1.6E-09 63.0 6.3 61 137-202 71-137 (140)
14 3hst_B Protein RV2228C/MT2287; 97.7 8.8E-05 3E-09 61.8 7.4 62 136-202 67-133 (141)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=98.92 E-value=1.2e-09 Score=94.62 Aligned_cols=66 Identities=15% Similarity=0.299 Sum_probs=52.8
Q ss_pred ceeeeccccHHHHHHhHc--------cCC--------CCHHHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhh
Q psy9737 136 DEVRGGKYDCSSFQAISN--------LYH--------PNPLVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKA 199 (368)
Q Consensus 136 ~~v~~~s~SlSAL~aI~n--------p~~--------~s~ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~A 199 (368)
..+...+||+.++..|.. .|. .-+++++|..++. +..|.|.|||+|+|+++||.||+|||+|
T Consensus 71 ~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~--~~~v~~~~V~~H~g~~~N~~AD~LA~~a 148 (154)
T 2qkb_A 71 NKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ--GMDIQWMHVPGHSGFIGNEEADRLAREG 148 (154)
T ss_dssp CEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT--TCEEEEEECCTTSSCHHHHHHHHHHHHH
T ss_pred ceEEEEECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc--CCceEEEEccCCCCCHhHHHHHHHHHHH
Confidence 578888899888887765 121 1247788887765 4679999999999999999999999999
Q ss_pred cCCC
Q psy9737 200 TSEP 203 (368)
Q Consensus 200 a~~~ 203 (368)
+..+
T Consensus 149 ~~~~ 152 (154)
T 2qkb_A 149 AKQS 152 (154)
T ss_dssp HTCC
T ss_pred HHhc
Confidence 8764
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=98.92 E-value=6.9e-10 Score=95.08 Aligned_cols=65 Identities=20% Similarity=0.097 Sum_probs=51.6
Q ss_pred ceeeeccccHHHHHHhHcc---------C--------CCCHHHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhh
Q psy9737 136 DEVRGGKYDCSSFQAISNL---------Y--------HPNPLVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKK 198 (368)
Q Consensus 136 ~~v~~~s~SlSAL~aI~np---------~--------~~s~ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~ 198 (368)
..+...+||+.++..|... | ..-+++++|.+++.. ..|.|.|||||+|+++||.||+|||+
T Consensus 63 ~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~--~~v~~~~V~gH~g~~~N~~AD~LA~~ 140 (146)
T 3h08_A 63 ARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL--HRVTFHKVKGHSDNPYNSRADELARL 140 (146)
T ss_dssp CEEEEEESCHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH--SEEEEEECCC-CCSHHHHHHHHHHHH
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh--CceEEEEcCCcCCcHhHHHHHHHHHH
Confidence 5788888999888887651 1 112488888888764 57999999999999999999999999
Q ss_pred hcCC
Q psy9737 199 ATSE 202 (368)
Q Consensus 199 Aa~~ 202 (368)
|+..
T Consensus 141 a~~~ 144 (146)
T 3h08_A 141 AIKE 144 (146)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9864
No 3
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=98.90 E-value=1.2e-09 Score=95.24 Aligned_cols=68 Identities=24% Similarity=0.272 Sum_probs=54.2
Q ss_pred ceeeeccccHHHHHHhHc--------cCC--------CCHHHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhh
Q psy9737 136 DEVRGGKYDCSSFQAISN--------LYH--------PNPLVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKA 199 (368)
Q Consensus 136 ~~v~~~s~SlSAL~aI~n--------p~~--------~s~ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~A 199 (368)
..+...+||+.++..|.. .+. ..++++.|.+++. ...|.|.|||||+|+++||.||+|||+|
T Consensus 63 ~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~--~~~v~~~wV~gH~g~~~Ne~AD~LA~~a 140 (155)
T 1jl1_A 63 AEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG--QHQIKWEWVKGHAGHPENERADELARAA 140 (155)
T ss_dssp CEEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT--TCEEEEEECCSSTTCHHHHHHHHHHHHH
T ss_pred CcEEEEeCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHc--cCceEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 578888899998888875 221 1247777777664 3689999999999999999999999999
Q ss_pred cCCCCC
Q psy9737 200 TSEPIT 205 (368)
Q Consensus 200 a~~~~~ 205 (368)
+..+..
T Consensus 141 ~~~~~~ 146 (155)
T 1jl1_A 141 AMNPTL 146 (155)
T ss_dssp HHSCCB
T ss_pred Hhccch
Confidence 987553
No 4
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=98.89 E-value=1.5e-09 Score=94.66 Aligned_cols=66 Identities=24% Similarity=0.325 Sum_probs=49.3
Q ss_pred ceeeeccccHHHHHHhHcc--------C--------CCCHHHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhh
Q psy9737 136 DEVRGGKYDCSSFQAISNL--------Y--------HPNPLVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKA 199 (368)
Q Consensus 136 ~~v~~~s~SlSAL~aI~np--------~--------~~s~ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~A 199 (368)
..+...+||+.++.+|... | ...+++++|.+++. ....|.|.|||||+|++|||.||+||++|
T Consensus 66 ~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~-~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a 144 (150)
T 3qio_A 66 LEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLI-KKEKVYLAWVPAHKGIGGNEQVDKLVSAG 144 (150)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHT-TCSEEEEEECCTTSCCHHHHHHHHHHHTT
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHh-hcCceEEEEccCcCCChhHHHHHHHHHHH
Confidence 5677777777776666442 1 12236666666554 47789999999999999999999999999
Q ss_pred cCC
Q psy9737 200 TSE 202 (368)
Q Consensus 200 a~~ 202 (368)
+..
T Consensus 145 ~~~ 147 (150)
T 3qio_A 145 IRK 147 (150)
T ss_dssp TSC
T ss_pred HHH
Confidence 875
No 5
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=98.87 E-value=2e-09 Score=94.18 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=53.0
Q ss_pred ceeeeccccHHHHHHhHc--------cCC--------CCHHHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhh
Q psy9737 136 DEVRGGKYDCSSFQAISN--------LYH--------PNPLVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKA 199 (368)
Q Consensus 136 ~~v~~~s~SlSAL~aI~n--------p~~--------~s~ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~A 199 (368)
..+...+||+.++..|.. .+. .-++++.|.+++.. ..|.|.|||||+|+++||.||+|||+|
T Consensus 65 ~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~--~~v~~~wV~gH~g~~~Ne~AD~LAk~a 142 (158)
T 2e4l_A 65 CKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQL--HQIDWRWVKGHAGHAENERCDQLARAA 142 (158)
T ss_dssp CEEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTT--SEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEeCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHcc--CcEEEEEccCCCCchhHHHHHHHHHHH
Confidence 578888899888888766 221 12477888887753 689999999999999999999999999
Q ss_pred cCC
Q psy9737 200 TSE 202 (368)
Q Consensus 200 a~~ 202 (368)
+..
T Consensus 143 ~~~ 145 (158)
T 2e4l_A 143 AEA 145 (158)
T ss_dssp HHS
T ss_pred HHh
Confidence 976
No 6
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=98.76 E-value=4.9e-09 Score=92.58 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=54.1
Q ss_pred eeeeccccHHHHHHhHc---------cCC--------CCHHHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhh
Q psy9737 137 EVRGGKYDCSSFQAISN---------LYH--------PNPLVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKA 199 (368)
Q Consensus 137 ~v~~~s~SlSAL~aI~n---------p~~--------~s~ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~A 199 (368)
.+...+||+.++..|.. .+. ..++++.|.+++.. ..|.|.|||||+|+++||.||+|||+|
T Consensus 68 ~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~--~~v~~~wV~gH~g~~~Ne~AD~LAk~a 145 (166)
T 1ril_A 68 EVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAP--HRVRFHFVKGHTGHPENERVDREARRQ 145 (166)
T ss_dssp EEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTT--SEEECCCCCGGGSCTHHHHHHHHHHHH
T ss_pred eEEEEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhc--CeEEEEEeeCCCCchhHHHHHHHHHHH
Confidence 68888899988888866 121 12477888887754 589999999999999999999999999
Q ss_pred cCCCCC
Q psy9737 200 TSEPIT 205 (368)
Q Consensus 200 a~~~~~ 205 (368)
+.....
T Consensus 146 ~~~~~~ 151 (166)
T 1ril_A 146 AQSQAK 151 (166)
T ss_dssp HTSSCC
T ss_pred HHHhhc
Confidence 987653
No 7
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=98.70 E-value=2.3e-09 Score=92.81 Aligned_cols=69 Identities=14% Similarity=0.028 Sum_probs=51.0
Q ss_pred eeeeccccHHHHHHhHccCCCC-HHHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhhcCCCCC
Q psy9737 137 EVRGGKYDCSSFQAISNLYHPN-PLVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKATSEPIT 205 (368)
Q Consensus 137 ~v~~~s~SlSAL~aI~np~~~s-~ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~Aa~~~~~ 205 (368)
.+...+||.+...-+.+.|..+ +.....+++++.....|.|.|||||+|+++||.||+|||+|+....+
T Consensus 71 ~v~I~tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 140 (147)
T 2kq2_A 71 KIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKVKAHSGNEFNDYVDMKAKSALGIRDL 140 (147)
T ss_dssp CCCBSSCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGSTTCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCT
T ss_pred eEEEEECcHHHHHHHhCCCccCCcchHHHHHHHHHhcCCeeEEEecCcCCCcchHHHHHHHHHHHhcccc
Confidence 5677777776655556666544 34455555554433389999999999999999999999999987665
No 8
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=98.69 E-value=9.1e-09 Score=91.44 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=52.6
Q ss_pred cceeeeccccHHHHHHhHccCC-----CCHHHHHHHHHHHcCCCeEEEEEeccCCC-----CCcChHHHHHHhhhcCCCC
Q psy9737 135 GDEVRGGKYDCSSFQAISNLYH-----PNPLVKEIQERSSNSQISFKFLWCPSHVG-----ISGNDQADAEAKKATSEPI 204 (368)
Q Consensus 135 ~~~v~~~s~SlSAL~aI~np~~-----~s~ii~~I~~~l~~~g~~V~l~WVPgH~g-----I~GNE~AD~lAK~Aa~~~~ 204 (368)
...+...+||+.++.+|..... +-+++++|.+.+. .+..|.|.|||||+| ++|||+||+|||+|+....
T Consensus 80 ~~~v~I~tDS~~vi~~iw~~~~g~~v~n~dl~~~l~~~l~-~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~ 158 (165)
T 3p1g_A 80 GKKLNVYTDSRYAFATAHVHSEGREIKNKNEILALLKALF-LPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV 158 (165)
T ss_dssp TSEEEEEECCHHHHHHHHSCCCSCCCSSHHHHHHHHHHTT-SBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEchHHHHhhhhcccCCCcccCHHHHHHHHHHHh-cCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCC
Confidence 4578888999998888842211 1135566655443 478999999999999 9999999999999987644
Q ss_pred C
Q psy9737 205 T 205 (368)
Q Consensus 205 ~ 205 (368)
.
T Consensus 159 ~ 159 (165)
T 3p1g_A 159 L 159 (165)
T ss_dssp T
T ss_pred C
Confidence 3
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=98.40 E-value=2.7e-07 Score=82.05 Aligned_cols=42 Identities=24% Similarity=0.138 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeccCCCC------CcChHHHHHHhhhcC
Q psy9737 159 PLVKEIQERSSNSQISFKFLWCPSHVGI------SGNDQADAEAKKATS 201 (368)
Q Consensus 159 ~ii~~I~~~l~~~g~~V~l~WVPgH~gI------~GNE~AD~lAK~Aa~ 201 (368)
+++++|.+++.. ...|.|.|||||+|+ +|||+||+||++|+.
T Consensus 115 dL~~~l~~~~~~-~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 115 SKWKSIAECLSM-KPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp HHHHHHHHHHHH-CTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 477888887754 357999999999996 489999999999874
No 10
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=98.39 E-value=3.7e-07 Score=94.04 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=53.1
Q ss_pred cceeeeccccHHHHHHhHccC--CCCHHHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhhc
Q psy9737 135 GDEVRGGKYDCSSFQAISNLY--HPNPLVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKAT 200 (368)
Q Consensus 135 ~~~v~~~s~SlSAL~aI~np~--~~s~ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~Aa 200 (368)
...+...+||+-++..|.+.. ...++.++|.+++.. ...|.|.|||||+|++|||.||+|||+|+
T Consensus 489 ~~~v~I~tDS~~v~~~i~~~~~~~~~~l~~~~~~~~~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 489 GPKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEMIK-KEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CSEEEEEESCHHHHHHHHTCCSEESCHHHHHHHHHHHH-CSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred CCeEEEEEehHHHHHHHhcccccccHHHHHHHHHHhcc-CCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 357888899999998887632 234677887777654 57899999999999999999999999985
No 11
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=98.25 E-value=5.4e-07 Score=92.86 Aligned_cols=64 Identities=27% Similarity=0.335 Sum_probs=50.0
Q ss_pred cceeeeccccHHHHHHhHccCC--CCHHHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhh
Q psy9737 135 GDEVRGGKYDCSSFQAISNLYH--PNPLVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKA 199 (368)
Q Consensus 135 ~~~v~~~s~SlSAL~aI~np~~--~s~ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~A 199 (368)
...+...+||+.++..|.+... ..++.++|.+.+.. ...|.|.|||||+|++|||.||+||++|
T Consensus 492 ~~~v~I~tDS~~vi~~i~~~~~~~~~~l~~~~~~~l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 492 GLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp CSEEEEEECCHHHHHHHTTCCSEESSHHHHHHHHHHHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred CCcEEEEeChHHHHHHHhcCCccCCHHHHHHHHHHHhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 3678888999999999976443 34677887766644 3589999999999999999999999986
No 12
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=97.79 E-value=2.1e-05 Score=67.01 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=49.4
Q ss_pred ceeeeccccHHHHHHhHccCCCC-----HHHHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhhcCC
Q psy9737 136 DEVRGGKYDCSSFQAISNLYHPN-----PLVKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKATSE 202 (368)
Q Consensus 136 ~~v~~~s~SlSAL~aI~np~~~s-----~ii~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~Aa~~ 202 (368)
..+...+||+.++..+.+.|..+ ++++.|..++... .|.|.|||+ ++|+.||+|||+|+..
T Consensus 69 ~~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~--~v~~~~V~~----~~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 69 SSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL--NATLIWVPR----EENKEADRLSRVAYEL 134 (149)
T ss_dssp CSCEEEESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH--TCEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred CEEEEEeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC--CEEEEEcCC----cccHHHHHHHHHHHHh
Confidence 57889999999999998876432 3667777776554 499999999 5999999999999864
No 13
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=97.73 E-value=4.6e-05 Score=63.02 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=47.8
Q ss_pred eeeeccccHHHHHHhHccCC-CCH----HHHHHHHH-HHcCCCeEEEEEeccCCCCCcChHHHHHHhhhcCC
Q psy9737 137 EVRGGKYDCSSFQAISNLYH-PNP----LVKEIQER-SSNSQISFKFLWCPSHVGISGNDQADAEAKKATSE 202 (368)
Q Consensus 137 ~v~~~s~SlSAL~aI~np~~-~s~----ii~~I~~~-l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~Aa~~ 202 (368)
.+...+||+.++..+.+.+. .+. ++.+|.++ +.. ...|.|.|||. ++||.||+|||+|+..
T Consensus 71 ~v~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~-~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 71 EVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMER-VPNLVFVHIPR----EKNARADELVNEAIDK 137 (140)
T ss_dssp EEEEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHH-CTTCEEEECCG----GGGHHHHHHHHHHHHH
T ss_pred eEEEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcC-CCcEEEEEcCc----hhhHHHHHHHHHHHHh
Confidence 78899999999999988663 332 45566666 443 35899999994 9999999999998753
No 14
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=97.68 E-value=8.8e-05 Score=61.79 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=47.7
Q ss_pred ceeeeccccHHHHHHhHccCC-CCH-H---HHHHHHHHHcCCCeEEEEEeccCCCCCcChHHHHHHhhhcCC
Q psy9737 136 DEVRGGKYDCSSFQAISNLYH-PNP-L---VKEIQERSSNSQISFKFLWCPSHVGISGNDQADAEAKKATSE 202 (368)
Q Consensus 136 ~~v~~~s~SlSAL~aI~np~~-~s~-i---i~~I~~~l~~~g~~V~l~WVPgH~gI~GNE~AD~lAK~Aa~~ 202 (368)
..+...+||+.++..|...|. .+. + +.+|.+++ .....|.|.|||. ++|+.||+|||+|+..
T Consensus 67 ~~v~i~tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~-~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 67 TEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALA-SQFRRINYEWVPR----ARNTYADRLANDAMDA 133 (141)
T ss_dssp SEEEEEESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHH-TTSSEEEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred ceEEEEeChHHHHHHHhCCcccCCHHHHHHHHHHHHHH-hcCCeEEEEEcCC----cccHHHHHHHHHHHHH
Confidence 578999999999999988653 443 3 33444444 3468999999995 8999999999998754
Done!