Query psy974
Match_columns 68
No_of_seqs 110 out of 1075
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 18:19:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v26_A Myosin VI; calmodulin-b 100.0 2.9E-30 9.9E-35 179.9 5.8 68 1-68 464-531 (784)
2 1lkx_A Myosin IE heavy chain; 100.0 3.7E-30 1.3E-34 177.8 5.1 67 1-67 398-464 (697)
3 4anj_A Unconventional myosin-V 100.0 1.1E-29 3.9E-34 180.6 5.8 68 1-68 468-535 (1052)
4 1w7j_A Myosin VA; motor protei 100.0 3.8E-29 1.3E-33 174.5 6.2 67 1-68 449-515 (795)
5 1w9i_A Myosin II heavy chain; 100.0 6.6E-29 2.3E-33 172.8 6.1 68 1-68 466-535 (770)
6 4db1_A Myosin-7; S1DC, cardiac 100.0 6.7E-29 2.3E-33 173.0 5.3 67 1-68 473-540 (783)
7 1kk8_A Myosin heavy chain, str 99.9 1.1E-28 3.8E-33 172.8 5.4 67 1-68 472-539 (837)
8 2dfs_A Myosin-5A; myosin-V, in 99.9 2.8E-28 9.6E-33 173.9 6.2 67 1-68 449-515 (1080)
9 2ycu_A Non muscle myosin 2C, a 99.9 3E-28 1E-32 172.8 6.0 68 1-68 445-515 (995)
10 1g8x_A Myosin II heavy chain f 99.9 6.5E-28 2.2E-32 171.3 6.4 68 1-68 466-535 (1010)
11 1i84_S Smooth muscle myosin he 99.9 1.2E-27 4.3E-32 171.3 5.5 68 1-68 476-546 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 60.3 3.7 0.00013 19.7 1.1 25 43-67 25-49 (53)
13 1mof_A Moloney murine leukemia 54.4 5.2 0.00018 19.3 1.1 25 43-67 27-51 (55)
14 4g2k_A General control protein 20.6 58 0.002 18.1 1.8 25 43-67 78-102 (125)
No 1
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.96 E-value=2.9e-30 Score=179.92 Aligned_cols=68 Identities=43% Similarity=0.822 Sum_probs=66.3
Q ss_pred CchhhhhhhhHHHHHHHHHHHhHHHHHHhhhhcccccccccCChHHHHHHHhcCCCchhhchhHhhcC
Q psy974 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANR 68 (68)
Q Consensus 1 feql~iN~~ne~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLdee~~~ 68 (68)
|||||||||||+||++|++++|+.|+++|.+|||+|.+++|.||++|+|||+++|+|||+||||||+.
T Consensus 464 FEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~ 531 (784)
T 2v26_A 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRL 531 (784)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999973
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=99.96 E-value=3.7e-30 Score=177.76 Aligned_cols=67 Identities=46% Similarity=0.778 Sum_probs=65.8
Q ss_pred CchhhhhhhhHHHHHHHHHHHhHHHHHHhhhhcccccccccCChHHHHHHHhcCCCchhhchhHhhc
Q psy974 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAN 67 (68)
Q Consensus 1 feql~iN~~ne~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLdee~~ 67 (68)
|||||||||||+||++|++++|+.|+++|.+|||+|.+++|.||++|+|||+++|+|||++|||||+
T Consensus 398 FEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~ 464 (697)
T 1lkx_A 398 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACL 464 (697)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhC
Confidence 6899999999999999999999999999999999999999999999999999999999999999996
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.96 E-value=1.1e-29 Score=180.60 Aligned_cols=68 Identities=43% Similarity=0.822 Sum_probs=66.4
Q ss_pred CchhhhhhhhHHHHHHHHHHHhHHHHHHhhhhcccccccccCChHHHHHHHhcCCCchhhchhHhhcC
Q psy974 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANR 68 (68)
Q Consensus 1 feql~iN~~ne~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLdee~~~ 68 (68)
|||||||||||+||++|++++|+.|+++|..|||+|.+++|.||++|+|||+++|+|||++|||||+.
T Consensus 468 FEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~ 535 (1052)
T 4anj_A 468 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRL 535 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcC
Confidence 78999999999999999999999999999999999999999999999999999999999999999973
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.95 E-value=3.8e-29 Score=174.49 Aligned_cols=67 Identities=57% Similarity=0.958 Sum_probs=64.8
Q ss_pred CchhhhhhhhHHHHHHHHHHHhHHHHHHhhhhcccccccccCChHHHHHHHhcCCCchhhchhHhhcC
Q psy974 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANR 68 (68)
Q Consensus 1 feql~iN~~ne~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLdee~~~ 68 (68)
|||||||||||+||++|++++|+.||++|.+|||+|.+++|.||++|+|||+++ +|||+||||||+.
T Consensus 449 FEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~ 515 (795)
T 1w7j_A 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKM 515 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTS
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccC
Confidence 689999999999999999999999999999999999999999999999999986 9999999999973
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.95 E-value=6.6e-29 Score=172.82 Aligned_cols=68 Identities=53% Similarity=0.999 Sum_probs=65.0
Q ss_pred CchhhhhhhhHHHHHHHHHHHhHHHHHHhhhhccccccccc-CChHHHHHHHhcC-CCchhhchhHhhcC
Q psy974 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVLDDQANR 68 (68)
Q Consensus 1 feql~iN~~ne~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~-p~Gll~lLdee~~~ 68 (68)
|||||||||||+||++|++++|+.|+++|..|||+|..++| .||++|+|||+++ |+|||++|||||+.
T Consensus 466 FEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~ 535 (770)
T 1w9i_A 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 535 (770)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSS
T ss_pred HHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCC
Confidence 68999999999999999999999999999999999999999 5999999999974 99999999999973
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.95 E-value=6.7e-29 Score=173.03 Aligned_cols=67 Identities=51% Similarity=1.013 Sum_probs=63.3
Q ss_pred CchhhhhhhhHHHHHHHHHHHhHHHHHHhhhhccccccccc-CChHHHHHHHhcCCCchhhchhHhhcC
Q psy974 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANR 68 (68)
Q Consensus 1 feql~iN~~ne~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~Gll~lLdee~~~ 68 (68)
|||||||||||+||++|++++|+.||++|.+|||+|.+++| .||++|+|||++ |+|||++|||||+.
T Consensus 473 FEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~ 540 (783)
T 4db1_A 473 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMF 540 (783)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcC
Confidence 68999999999999999999999999999999999999999 599999999995 89999999999974
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.95 E-value=1.1e-28 Score=172.83 Aligned_cols=67 Identities=54% Similarity=1.049 Sum_probs=64.4
Q ss_pred CchhhhhhhhHHHHHHHHHHHhHHHHHHhhhhccccccccc-CChHHHHHHHhcCCCchhhchhHhhcC
Q psy974 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANR 68 (68)
Q Consensus 1 feql~iN~~ne~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~Gll~lLdee~~~ 68 (68)
|||||||||||+||++|++++|+.|+++|..|||+|.+++| .||++|+|||++ |+|||++|||||+.
T Consensus 472 FEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~ 539 (837)
T 1kk8_A 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMF 539 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTC
T ss_pred HHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999 599999999996 89999999999974
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.95 E-value=2.8e-28 Score=173.92 Aligned_cols=67 Identities=57% Similarity=0.958 Sum_probs=64.7
Q ss_pred CchhhhhhhhHHHHHHHHHHHhHHHHHHhhhhcccccccccCChHHHHHHHhcCCCchhhchhHhhcC
Q psy974 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANR 68 (68)
Q Consensus 1 feql~iN~~ne~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gll~lLdee~~~ 68 (68)
|||||||||||+||++|++++|+.++++|..|||+|.+++|.||++|+|||+++ +|||+||||||+.
T Consensus 449 FEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~ 515 (1080)
T 2dfs_A 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKM 515 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTS
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccC
Confidence 789999999999999999999999999999999999999999999999999975 9999999999963
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.95 E-value=3e-28 Score=172.78 Aligned_cols=68 Identities=51% Similarity=0.953 Sum_probs=65.1
Q ss_pred CchhhhhhhhHHHHHHHHHHHhHHHHHHhhhhccccccccc-CChHHHHHHHhc--CCCchhhchhHhhcC
Q psy974 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQANR 68 (68)
Q Consensus 1 feql~iN~~ne~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~--~p~Gll~lLdee~~~ 68 (68)
|||||||||||+||++|++++|+.|+++|..|||+|.+++| .||++|+|||++ +|+|||++|||||+.
T Consensus 445 fEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~ 515 (995)
T 2ycu_A 445 FEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWF 515 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSS
T ss_pred HHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcC
Confidence 68999999999999999999999999999999999999999 699999999997 489999999999963
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.94 E-value=6.5e-28 Score=171.29 Aligned_cols=68 Identities=53% Similarity=0.987 Sum_probs=65.0
Q ss_pred CchhhhhhhhHHHHHHHHHHHhHHHHHHhhhhccccccccc-CChHHHHHHHhc-CCCchhhchhHhhcC
Q psy974 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQANR 68 (68)
Q Consensus 1 feql~iN~~ne~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~-~p~Gll~lLdee~~~ 68 (68)
|||||||||||+||++|++++|+.|+++|..|||+|.+++| .||++|+|||++ +|+|||++|||||+.
T Consensus 466 fEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~ 535 (1010)
T 1g8x_A 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 535 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTS
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCC
Confidence 68999999999999999999999999999999999999999 599999999997 499999999999963
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.94 E-value=1.2e-27 Score=171.32 Aligned_cols=68 Identities=51% Similarity=0.952 Sum_probs=63.6
Q ss_pred CchhhhhhhhHHHHHHHHHHHhHHHHHHhhhhccccccccc-CChHHHHHHHhcC--CCchhhchhHhhcC
Q psy974 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLCVLDDQANR 68 (68)
Q Consensus 1 feql~iN~~ne~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~--p~Gll~lLdee~~~ 68 (68)
|||||||||||+||++|++++|+.++++|..|||+|.+++| .||++|+|||+++ |+|||++|||||+.
T Consensus 476 feQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~ 546 (1184)
T 1i84_S 476 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWF 546 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCC
Confidence 78999999999999999999999999999999999999999 6999999999962 34999999999973
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=60.33 E-value=3.7 Score=19.67 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.4
Q ss_pred ChHHHHHHHhcCCCchhhchhHhhc
Q psy974 43 DNTLCLQLVEGKPNGLLCVLDDQAN 67 (68)
Q Consensus 43 dn~~~l~li~~~p~Gll~lLdee~~ 67 (68)
.|...+|++..+..|+=..|.|+|.
T Consensus 25 QNRraLDlL~a~~GG~C~~l~e~CC 49 (53)
T 1y4m_A 25 QNRRGLDMLTAAQGGICLALDEKCC 49 (53)
T ss_dssp HHHHHHHHHTGGGTSHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhCCccHHhcCchh
Confidence 5788999999888899999998883
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=54.38 E-value=5.2 Score=19.30 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.3
Q ss_pred ChHHHHHHHhcCCCchhhchhHhhc
Q psy974 43 DNTLCLQLVEGKPNGLLCVLDDQAN 67 (68)
Q Consensus 43 dn~~~l~li~~~p~Gll~lLdee~~ 67 (68)
.|...+|++..+..|+=..|.|+|.
T Consensus 27 QNRraLD~L~a~~GG~C~~l~e~CC 51 (55)
T 1mof_A 27 QNRRGLDLLFLKEGGLCAALKEECA 51 (55)
T ss_dssp HHHHHHHHHTGGGTCHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhCCccHHHcCchh
Confidence 5788999999888899999988873
No 14
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=20.59 E-value=58 Score=18.13 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=20.5
Q ss_pred ChHHHHHHHhcCCCchhhchhHhhc
Q psy974 43 DNTLCLQLVEGKPNGLLCVLDDQAN 67 (68)
Q Consensus 43 dn~~~l~li~~~p~Gll~lLdee~~ 67 (68)
-|...+|++.-...|+=..|.++|.
T Consensus 78 QNRraLD~Lla~qGG~C~~l~e~CC 102 (125)
T 4g2k_A 78 INRHAIDFLLTRWGGTCKVLGPDCS 102 (125)
T ss_dssp HHHHHHHHHHGGGTCHHHHHCGGGG
T ss_pred HHHHHHHHHHHHcCCcHHHhcccce
Confidence 3677889888878899999998884
Done!