BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9740
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 52/71 (73%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
+IATPGRL DHL+ F+L +K+LV+DEADR+L+ F+ ++ I +P+ ++T LFS
Sbjct: 165 IIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFS 224
Query: 61 ATMTDTLEQVK 71
ATMT +++++
Sbjct: 225 ATMTKKVQKLQ 235
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
++ATPGRL DH+ F ++ LV+DEADR+L F+E+++ I +P ++QT+LFS
Sbjct: 180 IVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFS 239
Query: 61 ATMTDTLEQVKSITKKQ 77
AT T +E + I+ K+
Sbjct: 240 ATQTRKVEDLARISLKK 256
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
++ TPGRL H+D +F ++ LVLDEADR+L F + M + +PK++QTLLFS
Sbjct: 150 LVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFS 209
Query: 61 ATMTDTLEQVKSITKKQ 77
AT T +++ + ++ K
Sbjct: 210 ATQTKSVKDLARLSLKN 226
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V+ATPGR D+L L+R++ VLDEAD +LS F+E++ + A P +QTLLFS
Sbjct: 124 VVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFS 182
Query: 61 ATM 63
AT+
Sbjct: 183 ATL 185
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V+ATPGR D+L L+R++ VLDEAD +LS F+E++ + A P +QTLLFS
Sbjct: 124 VVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFS 182
Query: 61 ATM 63
AT+
Sbjct: 183 ATL 185
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 2 IATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSA 61
IATPGRL D L+ C +L R +LVLDEADR+L F+ Q+R I + +QTL++SA
Sbjct: 157 IATPGRLIDFLE-CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 215
Query: 62 TMTDTLEQV 70
T + Q+
Sbjct: 216 TWPKEVRQL 224
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 2 IATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSA 61
IATPGRL D L+ C +L R +LVLDEADR+L F+ Q+R I + +QTL++SA
Sbjct: 171 IATPGRLIDFLE-CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 229
Query: 62 TMTDTLEQV 70
T + Q+
Sbjct: 230 TWPKEVRQL 238
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
+IATPGRL D L N+ +L I +LV+DEAD++L F+ Q+R I V +QT++ S
Sbjct: 147 IIATPGRLND-LQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTS 205
Query: 61 ATMTDTLEQV 70
AT DT+ Q+
Sbjct: 206 ATWPDTVRQL 215
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V+ TPGR+ DH++ T +L +K+ +LDEAD L+ F + + I A K K+ LLFS
Sbjct: 127 VVGTPGRILDHINRG-TLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKDKRILLFS 185
Query: 61 ATMTDTLEQVKSITKKQVGTLLF-SATMTDTLEQ 93
AT ++ ++ KK G F A + +EQ
Sbjct: 186 ATXP---REILNLAKKYXGDYSFIKAKINANIEQ 216
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V+ TPGR+ D++ F ++IK +LDEAD +LS F EQ+ IF +P Q +L S
Sbjct: 143 VVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLS 201
Query: 61 ATM-TDTLEQVKSITKKQVGTLLFSATMTDTLEQVK 95
ATM D LE + V L+ + TLE +K
Sbjct: 202 ATMPNDVLEVTTKFMRNPVRILVKKDEL--TLEGIK 235
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V+ TPGR+ D++ F ++IK +LDEAD +LS F EQ+ IF +P Q +L S
Sbjct: 142 VVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLS 200
Query: 61 ATM-TDTLE 68
ATM D LE
Sbjct: 201 ATMPNDVLE 209
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V+ TPGR+ D++ F ++IK +LDEAD +LS F EQ+ IF +P Q +L S
Sbjct: 135 VVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLS 193
Query: 61 ATM-TDTLE 68
ATM D LE
Sbjct: 194 ATMPNDVLE 202
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIF--GAVPK--QKQT 56
++ATPGRL D ++ N SL K++VLDEADR+L F+ Q+R I +P +QT
Sbjct: 154 LVATPGRLVDFIEK-NKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQT 212
Query: 57 LLFSATMTDTLEQVKS 72
L+FSAT ++++ +
Sbjct: 213 LMFSATFPKEIQKLAA 228
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 1 VIATPGRLADHLD-TCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVP--KQKQTL 57
VIATPGRL D +D T TF R F+VLDEADR+L F E MR I V + QTL
Sbjct: 183 VIATPGRLLDFVDRTFITFEDTR--FVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTL 240
Query: 58 LFSATMTDTLEQV 70
+FSAT + ++++
Sbjct: 241 MFSATFPEEIQRM 253
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V+ TPGR+ D++ F ++IK +LDEAD LS F EQ+ IF +P Q +L S
Sbjct: 142 VVGTPGRVFDNIQR-RRFRTDKIKXFILDEADEXLSSGFKEQIYQIFTLLPPTTQVVLLS 200
Query: 61 ATM-TDTLEQVKSITKKQVGTLLFSATMTDTLEQVK 95
AT D LE + V L+ + TLE +K
Sbjct: 201 ATXPNDVLEVTTKFXRNPVRILVKKDEL--TLEGIK 234
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
VIATPGR+ D L ++ ++ +VLDEAD+LLS F + M I +PK +Q LL+S
Sbjct: 126 VIATPGRILD-LIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYS 184
Query: 61 AT 62
AT
Sbjct: 185 AT 186
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 51.6 bits (122), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQK------ 54
VIATPGRL D L+ + + + VLDEADRLL F + + TI G + ++
Sbjct: 154 VIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADN 213
Query: 55 -QTLLFSATMTDTLEQVKSITKKQVGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQA 113
+TLLFSAT+ D ++++ + + L + E + I + V + K +S A
Sbjct: 214 IKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFA 273
Query: 114 FLLCQQHIVAQI 125
+ +HI QI
Sbjct: 274 AV---EHIKKQI 282
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQK------ 54
VIATPGRL D L+ + + + VLDEADRLL F + + TI G + ++
Sbjct: 154 VIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADN 213
Query: 55 -QTLLFSATMTDTLEQV 70
+TLLFSAT+ D ++++
Sbjct: 214 IKTLLFSATLDDKVQKL 230
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQK------ 54
VIATPGRL D L+ + + + VLDEADRLL F + + TI G + ++
Sbjct: 205 VIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADN 264
Query: 55 -QTLLFSATMTDTLEQV 70
+TLLFSAT+ D ++++
Sbjct: 265 IKTLLFSATLDDKVQKL 281
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
++ TPGR+ D L+ S IK VLDEAD +LS F +Q+ IF + Q +L S
Sbjct: 137 IVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLS 195
Query: 61 ATM-TDTLEQVKSITKKQVGTLLFSATMT 88
ATM +D LE K + + L+ +T
Sbjct: 196 ATMPSDVLEVTKKFMRDPIRILVKKEELT 224
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V+ TPGR+ D L+ S IK VLDEAD +LS F +Q+ IF + Q +L S
Sbjct: 153 VVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLS 211
Query: 61 ATM-TDTLEQVKSITKKQVGTLL 82
ATM TD LE K + + L+
Sbjct: 212 ATMPTDVLEVTKKFMRDPIRILV 234
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
++ TPGR+ D L+ S IK VLDEAD +LS F +Q+ IF + Q +L S
Sbjct: 163 IVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLS 221
Query: 61 ATM-TDTLEQVKSITKKQVGTLLFSATMT 88
ATM +D LE K + + L+ +T
Sbjct: 222 ATMPSDVLEVTKKFMRDPIRILVKKEELT 250
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIF--GAVPKQ--KQT 56
++ATPGRL D ++ L+ K+LVLDEADR+L F+ Q+R I +P + + T
Sbjct: 155 LVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 213
Query: 57 LLFSATMTDTLEQV 70
++FSAT ++ +
Sbjct: 214 MMFSATFPKEIQML 227
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGI-FDEQMRTIFGAVPKQKQTLLF 59
V+ TPGR+ L + +L IK +LDEAD++L + ++ IF P +KQ ++F
Sbjct: 131 VVGTPGRIL-ALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPHEKQVMMF 189
Query: 60 SATMTDTLEQV 70
SAT++ + V
Sbjct: 190 SATLSKEIRPV 200
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
++ TPGR+ D L+ S I VLDEAD +LS F +Q+ IF + Q +L S
Sbjct: 138 IVGTPGRVFDMLNR-RYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQXLNSNTQVVLLS 196
Query: 61 ATM-TDTLE 68
ATM +D LE
Sbjct: 197 ATMPSDVLE 205
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 1 VIATPGRLAD--HLDTCNTFSLNRIKFLVLDEADRLLS-GIFDEQMRTIFGAVPKQKQTL 57
+ +PGR+ LD N S I+ +LDEAD+LL G F EQ+ I+ ++P KQ L
Sbjct: 146 AVGSPGRIKQLIELDYLNPGS---IRLFILDEADKLLEEGSFQEQINWIYSSLPASKQML 202
Query: 58 LFSATMTDTL 67
SAT + L
Sbjct: 203 AVSATYPEFL 212
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGI-FDEQMRTIFGAVPKQKQTLLF 59
V+ TPGR+ L + +L IK +LDE D++L + ++ IF P +KQ ++F
Sbjct: 138 VVGTPGRILA-LARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMF 196
Query: 60 SATMTDTLEQV 70
SAT++ + V
Sbjct: 197 SATLSKEIRPV 207
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V TPGR+ D + + IK LVLDEAD +L+ F EQ+ ++ +P Q +L S
Sbjct: 123 VAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 181
Query: 61 ATM 63
AT+
Sbjct: 182 ATL 184
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V TPGR+ D + + IK LVLDEAD +L+ F EQ+ ++ +P Q +L S
Sbjct: 123 VAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 181
Query: 61 ATM 63
AT+
Sbjct: 182 ATL 184
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V TPGR+ D + + IK LVLDEAD +L+ F EQ+ ++ +P Q +L S
Sbjct: 138 VAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 196
Query: 61 ATM 63
AT+
Sbjct: 197 ATL 199
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V TPGR+ D + + IK LVLDEAD +L+ F EQ+ ++ +P Q +L S
Sbjct: 159 VAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 217
Query: 61 ATM 63
AT+
Sbjct: 218 ATL 220
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V TPGR+ D + + IK LVLDEAD +L+ F EQ+ ++ +P Q +L S
Sbjct: 160 VAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 218
Query: 61 ATM 63
AT+
Sbjct: 219 ATL 221
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V TPGR+ D + + IK LVLDEAD +L+ F EQ+ ++ +P Q +L S
Sbjct: 160 VAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 218
Query: 61 ATM 63
AT+
Sbjct: 219 ATL 221
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGI-FDEQMRTIFGAVPKQKQTLLF 59
V+ TPGR+ L + +L IK +LDE D++L + ++ IF P +KQ ++F
Sbjct: 132 VVGTPGRIL-ALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMF 190
Query: 60 SATMTDTLEQV 70
SAT++ + V
Sbjct: 191 SATLSKEIRPV 201
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGI-FDEQMRTIFGAVPKQKQTLLF 59
V+ TPGR+ L + +L IK +LDE D++L + ++ IF P +KQ ++F
Sbjct: 132 VVGTPGRIL-ALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMF 190
Query: 60 SATMTDTLEQV 70
SAT++ + V
Sbjct: 191 SATLSKEIRPV 201
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS--GIFDEQMRTIFGAVPKQKQTLL 58
VI TPG + D + IK VLDEAD +L G+ D+ MR I +P+ Q +L
Sbjct: 239 VIGTPGTVMDLMKR-RQLDARDIKVFVLDEADNMLDQQGLGDQSMR-IKHLLPRNTQIVL 296
Query: 59 FSATMTDTLEQ 69
FSAT ++ +E+
Sbjct: 297 FSATFSERVEK 307
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
++ TPGR+ D L + L+ ++DEAD++LS F + I +P Q+LLFS
Sbjct: 143 LVGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFS 201
Query: 61 ATMTDTLEQ 69
AT T+++
Sbjct: 202 ATFPLTVKE 210
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V+ATPGRL D L + L+ + +++DEAD + F + ++ I +K T LFS
Sbjct: 109 VVATPGRLLD-LWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFS 167
Query: 61 ATMTDTLEQV 70
AT+ + + +V
Sbjct: 168 ATIPEEIRKV 177
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS--GIFDEQMRTIFGAVPKQKQTLL 58
++ TPG + D L L +IK VLDEAD +L G+ D+ +R + +PK Q +L
Sbjct: 125 IVGTPGTVLD-LMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIR-VKRFLPKDTQLVL 182
Query: 59 FSATMTDTLEQ 69
FSAT D + Q
Sbjct: 183 FSATFADAVRQ 193
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS--GIFDEQMRTIFGAVPKQKQTLL 58
++ TPG + D L L +IK VLDEAD +L G+ D+ +R + +PK Q +L
Sbjct: 125 IVGTPGTVLD-LMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIR-VKRFLPKDTQLVL 182
Query: 59 FSATMTDTLEQ 69
FSAT D + Q
Sbjct: 183 FSATFADAVRQ 193
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLL--SGIFDEQMRTIFGAVPKQKQTLL 58
++ TPG + D L L +IK VLDEAD +L G+ D+ +R + +PK Q +L
Sbjct: 142 IVGTPGTVLD-LMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIR-VKRFLPKDTQLVL 199
Query: 59 FSATMTDTLEQ 69
FSAT D + Q
Sbjct: 200 FSATFADAVRQ 210
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS--GIFDEQMRTIFGAVPKQKQTLL 58
VI TPG + D +IK VLDEAD +++ G D+ +R I +P+ Q LL
Sbjct: 147 VIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR-IQRMLPRNCQMLL 205
Query: 59 FSATMTDTL 67
FSAT D++
Sbjct: 206 FSATFEDSV 214
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS--GIFDEQMRTIFGAVPKQKQTLL 58
VI TPG + D +IK VLDEAD +++ G D+ +R I +P+ Q LL
Sbjct: 147 VIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR-IQRMLPRNCQMLL 205
Query: 59 FSATMTDTL 67
FSAT D++
Sbjct: 206 FSATFEDSV 214
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS--GIFDEQMRTIFGAVPKQKQTLL 58
VI TPG + D +IK VLDEAD +++ G D+ +R I +P+ Q LL
Sbjct: 214 VIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR-IQRMLPRNCQMLL 272
Query: 59 FSATMTDTL 67
FSAT D++
Sbjct: 273 FSATFEDSV 281
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS--GIFDEQMRTIFGAVPKQKQTLL 58
VI TPG + D +IK VLDEAD +++ G D+ +R I +P+ Q LL
Sbjct: 163 VIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR-IQRMLPRNCQMLL 221
Query: 59 FSATMTDTL 67
FSAT D++
Sbjct: 222 FSATFEDSV 230
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS--GIFDEQMRTIFGAVPKQKQTLL 58
VI TPG + D +IK VLDEAD +++ G D+ +R I +P+ Q LL
Sbjct: 184 VIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR-IQRMLPRNCQMLL 242
Query: 59 FSATMTDTL 67
FSAT D++
Sbjct: 243 FSATFEDSV 251
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS--GIFDEQMRTIFGAVPKQKQTLL 58
VI TPG + D +IK VLDEAD +++ G D+ +R I +P+ Q LL
Sbjct: 214 VIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR-IQRMLPRNCQMLL 272
Query: 59 FSATMTDTL 67
FSAT D++
Sbjct: 273 FSATFEDSV 281
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
VI TPGR+ D + ++ LV+DEAD L F + I PK Q L+FS
Sbjct: 130 VIGTPGRINDFIRE-QALDVHTAHILVVDEADLXLDXGFITDVDQIAARXPKDLQXLVFS 188
Query: 61 ATMTDTLE 68
AT+ + L+
Sbjct: 189 ATIPEKLK 196
>pdb|3PV1|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Domains
pdb|3PV1|B Chain B, Crystal Structure Of The Usp15 Dusp-Ubl Domains
Length = 225
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 11 HLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68
L C ++N + +AD + + ++++R IF ++P +K+T L++ M++T E
Sbjct: 137 ELKLCENGNMNNVVTRRFSKADTIDT--IEKEIRKIF-SIPDEKETRLWNKYMSNTFE 191
>pdb|3PPA|A Chain A, Structure Of The Dusp-Ubl Domains Of Usp15
Length = 237
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 11 HLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68
L C ++N + +AD + + ++++R IF ++P +K+T L++ M++T E
Sbjct: 149 ELKLCENGNMNNVVTRRFSKADTIDT--IEKEIRKIF-SIPDEKETRLWNKYMSNTFE 203
>pdb|4A3O|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Monomer
pdb|4A3O|B Chain B, Crystal Structure Of The Usp15 Dusp-Ubl Monomer
Length = 220
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 11 HLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68
L C ++N + +AD + + ++++R IF ++P +K+T L++ M++T E
Sbjct: 132 ELKLCENGNMNNVVTRRFSKADTIDT--IEKEIRKIF-SIPDEKETRLWNKYMSNTFE 186
>pdb|4A3P|A Chain A, Structure Of Usp15 Dusp-Ubl Deletion Mutant
Length = 217
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 11 HLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68
L C ++N + +AD + + ++++R IF ++P +K+T L++ M++T E
Sbjct: 129 ELKLCENGNMNNVVTRRFSKADTIDT--IEKEIRKIF-SIPDEKETRLWNKYMSNTFE 183
>pdb|3T9L|A Chain A, Structure Of N-Terminal Dusp-Ubl Domains Of Human Usp15
Length = 230
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 11 HLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68
L C ++N + +AD + + ++++R IF ++P +K+T L++ M++T E
Sbjct: 135 ELKLCENGNMNNVVTRRFSKADTIDT--IEKEIRKIF-SIPDEKETRLWNKYMSNTFE 189
>pdb|1MKE|A Chain A, Structure Of The N-Wasp Evh1 Domain-Wip Complex
Length = 152
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 153 YVLCPYDVKDGYLVETVRLYRE---KSPRGAIVIFT-DTC 188
Y L +D+KDG L+ LY SPRG F DTC
Sbjct: 78 YFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTC 117
>pdb|2IFS|A Chain A, Structure Of The N-Wasp Evh1 Domain In Complex With An
Extended Wip Peptide
Length = 169
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 153 YVLCPYDVKDGYLVETVRLYRE---KSPRGAIVIFT-DTC 188
Y L +D+KDG L+ LY SPRG F DTC
Sbjct: 95 YFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTC 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,878,215
Number of Sequences: 62578
Number of extensions: 170663
Number of successful extensions: 718
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 71
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)