Query psy9740
Match_columns 189
No_of_seqs 117 out of 1329
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 18:20:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330|consensus 100.0 3.6E-29 7.7E-34 214.3 7.8 128 1-188 183-310 (476)
2 KOG0343|consensus 100.0 1.4E-28 3.1E-33 217.9 10.8 131 1-189 194-324 (758)
3 KOG0328|consensus 99.9 7.3E-28 1.6E-32 199.6 10.2 128 1-189 149-277 (400)
4 KOG0331|consensus 99.9 7.9E-28 1.7E-32 214.6 10.5 131 1-189 219-352 (519)
5 COG0513 SrmB Superfamily II DN 99.9 1.7E-27 3.8E-32 215.3 11.0 128 1-189 154-284 (513)
6 KOG0342|consensus 99.9 3E-26 6.5E-31 200.7 10.7 133 1-189 209-341 (543)
7 KOG0345|consensus 99.9 1E-25 2.2E-30 196.8 9.2 129 1-189 135-266 (567)
8 KOG0338|consensus 99.9 1E-25 2.3E-30 198.3 7.9 129 1-189 306-437 (691)
9 KOG0326|consensus 99.9 8.1E-25 1.8E-29 184.1 9.3 126 1-188 207-332 (459)
10 KOG0348|consensus 99.9 4.2E-25 9.1E-30 195.4 6.2 157 1-188 266-435 (708)
11 KOG0333|consensus 99.9 1.9E-24 4.1E-29 190.9 9.6 128 1-189 376-528 (673)
12 KOG0327|consensus 99.9 1.8E-23 3.9E-28 178.8 9.3 126 1-189 149-274 (397)
13 KOG0336|consensus 99.9 4.6E-23 1E-27 178.2 10.6 129 1-188 347-475 (629)
14 KOG0346|consensus 99.9 7E-23 1.5E-27 178.0 10.5 128 1-188 149-278 (569)
15 KOG0335|consensus 99.9 1.1E-22 2.4E-27 179.6 9.0 133 1-189 206-348 (482)
16 KOG0339|consensus 99.9 3.7E-22 8.1E-27 176.0 11.0 128 1-188 350-478 (731)
17 KOG0341|consensus 99.9 2.9E-23 6.3E-28 178.5 2.9 126 1-188 306-431 (610)
18 PRK11776 ATP-dependent RNA hel 99.9 1.1E-21 2.4E-26 175.0 11.2 127 1-189 127-253 (460)
19 KOG0329|consensus 99.9 1.5E-22 3.2E-27 166.3 4.9 127 1-187 165-292 (387)
20 PRK11634 ATP-dependent RNA hel 99.9 1.3E-21 2.9E-26 180.7 11.6 128 1-189 129-256 (629)
21 PTZ00110 helicase; Provisional 99.9 2.3E-21 5E-26 176.7 12.0 131 1-189 257-388 (545)
22 KOG4284|consensus 99.8 1.3E-21 2.8E-26 176.5 7.3 126 1-187 147-281 (980)
23 KOG0340|consensus 99.8 1.9E-21 4E-26 165.5 7.7 134 1-189 129-265 (442)
24 PLN00206 DEAD-box ATP-dependen 99.8 1.3E-20 2.8E-25 170.8 12.6 129 1-189 250-378 (518)
25 PRK10590 ATP-dependent RNA hel 99.8 1E-20 2.2E-25 168.9 10.7 128 1-189 129-256 (456)
26 PRK04837 ATP-dependent RNA hel 99.8 1.6E-20 3.4E-25 166.0 11.2 128 1-189 137-266 (423)
27 KOG0337|consensus 99.8 7.1E-21 1.5E-25 164.8 7.2 129 1-189 144-272 (529)
28 PRK04537 ATP-dependent RNA hel 99.8 3E-20 6.4E-25 170.2 10.6 129 1-189 138-268 (572)
29 KOG0347|consensus 99.8 9.8E-21 2.1E-25 168.3 3.2 149 1-188 317-473 (731)
30 PRK11192 ATP-dependent RNA hel 99.8 2.7E-19 5.9E-24 158.4 11.8 128 1-189 127-256 (434)
31 PRK01297 ATP-dependent RNA hel 99.8 6.6E-19 1.4E-23 157.9 11.8 128 1-189 217-346 (475)
32 KOG0332|consensus 99.8 1.8E-19 3.9E-24 154.3 6.4 129 1-189 211-341 (477)
33 KOG0350|consensus 99.8 3.4E-19 7.4E-24 157.0 7.6 132 1-188 274-439 (620)
34 KOG0334|consensus 99.8 6.9E-19 1.5E-23 165.3 6.7 129 1-188 492-623 (997)
35 PTZ00424 helicase 45; Provisio 99.7 2.6E-17 5.6E-22 143.8 12.0 128 1-189 150-278 (401)
36 TIGR02621 cas3_GSU0051 CRISPR- 99.6 3.3E-15 7.1E-20 140.7 10.8 70 1-77 139-229 (844)
37 PRK09401 reverse gyrase; Revie 99.6 4.9E-15 1.1E-19 144.7 10.8 120 1-189 183-339 (1176)
38 KOG0344|consensus 99.5 3.2E-14 6.9E-19 127.6 6.8 127 1-188 266-397 (593)
39 KOG0349|consensus 99.5 7.9E-14 1.7E-18 122.1 6.3 86 1-87 343-435 (725)
40 TIGR01054 rgy reverse gyrase. 99.4 7.8E-13 1.7E-17 129.5 10.1 118 1-188 182-336 (1171)
41 PRK14701 reverse gyrase; Provi 99.4 6.6E-13 1.4E-17 132.9 9.7 120 1-189 182-341 (1638)
42 TIGR03817 DECH_helic helicase/ 99.4 6.9E-13 1.5E-17 125.0 9.1 76 1-78 133-218 (742)
43 PRK00254 ski2-like helicase; P 99.4 1.5E-12 3.2E-17 122.4 10.1 72 1-74 118-189 (720)
44 PRK09751 putative ATP-dependen 99.3 6.1E-12 1.3E-16 124.6 10.6 74 1-75 103-180 (1490)
45 TIGR01970 DEAH_box_HrpB ATP-de 99.3 8E-12 1.7E-16 118.7 10.7 72 1-77 94-167 (819)
46 PRK11664 ATP-dependent RNA hel 99.3 9.4E-12 2E-16 118.2 9.9 72 1-77 97-170 (812)
47 cd00268 DEADc DEAD-box helicas 99.3 6.6E-12 1.4E-16 99.8 7.2 78 1-79 123-200 (203)
48 PRK02362 ski2-like helicase; P 99.3 1.2E-11 2.5E-16 116.7 9.0 72 1-74 117-191 (737)
49 PRK11131 ATP-dependent RNA hel 99.3 3.8E-11 8.3E-16 117.5 11.6 72 1-77 167-240 (1294)
50 TIGR01587 cas3_core CRISPR-ass 99.2 1.6E-11 3.4E-16 106.0 6.4 75 1-76 98-178 (358)
51 PF00270 DEAD: DEAD/DEAH box h 99.2 5.6E-11 1.2E-15 91.2 6.6 69 1-70 99-169 (169)
52 PRK11057 ATP-dependent DNA hel 99.2 1.3E-10 2.9E-15 107.4 9.3 69 1-71 119-192 (607)
53 PRK13767 ATP-dependent helicas 99.1 1.1E-10 2.4E-15 112.0 8.7 72 1-74 150-227 (876)
54 PHA02653 RNA helicase NPH-II; 99.1 1.1E-10 2.5E-15 108.8 8.2 57 19-78 288-345 (675)
55 TIGR01389 recQ ATP-dependent D 99.1 1.5E-10 3.3E-15 106.7 8.8 75 1-77 107-186 (591)
56 PRK01172 ski2-like helicase; P 99.1 1.5E-10 3.2E-15 108.2 8.6 72 1-74 115-189 (674)
57 TIGR00614 recQ_fam ATP-depende 99.1 1.5E-10 3.4E-15 103.9 8.2 74 1-75 105-184 (470)
58 PLN03137 ATP-dependent DNA hel 99.1 4.4E-10 9.5E-15 108.7 9.4 76 1-76 556-639 (1195)
59 PRK10689 transcription-repair 99.0 1.9E-09 4.1E-14 105.7 9.8 67 1-78 707-773 (1147)
60 TIGR01967 DEAH_box_HrpA ATP-de 99.0 4E-09 8.7E-14 103.8 11.5 72 1-77 160-233 (1283)
61 TIGR00580 mfd transcription-re 98.9 5.4E-09 1.2E-13 100.6 10.3 66 1-77 558-623 (926)
62 TIGR03158 cas3_cyano CRISPR-as 98.9 1.3E-08 2.8E-13 88.6 11.1 74 1-74 117-202 (357)
63 COG1202 Superfamily II helicas 98.9 1E-08 2.3E-13 92.9 8.9 125 1-189 319-451 (830)
64 COG1204 Superfamily II helicas 98.8 1.6E-08 3.4E-13 95.8 8.5 75 1-77 126-203 (766)
65 PRK10917 ATP-dependent DNA hel 98.6 4E-07 8.6E-12 85.6 10.4 59 1-70 368-426 (681)
66 COG1201 Lhr Lhr-like helicases 98.5 5E-07 1.1E-11 85.6 9.9 74 1-77 127-206 (814)
67 smart00487 DEXDc DEAD-like hel 98.5 2.8E-07 6.2E-12 70.8 6.9 76 1-77 109-184 (201)
68 PF06862 DUF1253: Protein of u 98.4 5.9E-06 1.3E-10 73.8 11.9 76 1-77 135-239 (442)
69 TIGR00643 recG ATP-dependent D 98.3 4.6E-06 1E-10 77.7 9.7 57 1-67 342-400 (630)
70 TIGR03714 secA2 accessory Sec 98.1 1.6E-05 3.5E-10 75.2 9.1 34 153-188 401-434 (762)
71 COG0514 RecQ Superfamily II DN 98.1 9.3E-06 2E-10 74.7 6.7 72 4-77 114-190 (590)
72 PRK09200 preprotein translocas 98.0 3.3E-05 7.1E-10 73.5 9.9 35 1-35 172-212 (790)
73 PHA02558 uvsW UvsW helicase; P 97.9 8.2E-06 1.8E-10 74.1 4.2 58 1-66 205-262 (501)
74 PRK05580 primosome assembly pr 97.9 7.8E-05 1.7E-09 70.2 10.3 63 1-71 245-312 (679)
75 PRK12904 preprotein translocas 97.9 5.1E-05 1.1E-09 72.4 8.7 34 1-35 174-214 (830)
76 cd00046 DEXDc DEAD-like helica 97.9 2.9E-05 6.3E-10 56.1 5.7 62 1-63 83-144 (144)
77 PRK13104 secA preprotein trans 97.9 5.5E-05 1.2E-09 72.5 8.8 35 1-35 175-215 (896)
78 COG1205 Distinct helicase fami 97.9 0.00011 2.4E-09 70.7 10.8 75 1-77 171-255 (851)
79 TIGR00595 priA primosomal prot 97.8 0.00014 3E-09 66.3 9.9 59 1-68 80-144 (505)
80 KOG0952|consensus 97.8 4.2E-05 9.1E-10 73.6 6.7 75 1-77 215-298 (1230)
81 PRK09694 helicase Cas3; Provis 97.7 0.00013 2.9E-09 70.3 8.6 73 1-74 414-492 (878)
82 PRK12899 secA preprotein trans 97.4 6E-05 1.3E-09 72.5 2.0 35 1-36 187-229 (970)
83 PRK13766 Hef nuclease; Provisi 97.4 0.00043 9.4E-09 65.8 6.9 63 1-64 111-173 (773)
84 COG4581 Superfamily II RNA hel 97.2 0.0015 3.3E-08 63.7 8.3 72 2-75 210-281 (1041)
85 KOG0948|consensus 97.1 0.0011 2.4E-08 62.4 6.2 75 1-77 215-289 (1041)
86 KOG0351|consensus 97.0 0.0038 8.2E-08 60.8 8.8 55 23-77 386-444 (941)
87 PF14617 CMS1: U3-containing 9 96.8 0.00085 1.8E-08 56.0 3.0 28 2-30 182-209 (252)
88 KOG0951|consensus 96.8 0.0017 3.8E-08 64.0 4.7 64 1-65 415-486 (1674)
89 TIGR00963 secA preprotein tran 96.7 0.0006 1.3E-08 64.5 1.5 36 1-36 149-190 (745)
90 PRK12898 secA preprotein trans 96.7 0.012 2.5E-07 55.4 9.2 40 147-188 444-483 (656)
91 KOG0947|consensus 96.6 0.0011 2.5E-08 63.7 2.4 71 1-73 383-453 (1248)
92 COG4098 comFA Superfamily II D 96.3 0.053 1.1E-06 47.4 10.6 63 1-72 189-252 (441)
93 KOG0950|consensus 96.1 0.0071 1.5E-07 58.2 4.3 48 19-66 338-390 (1008)
94 COG1643 HrpA HrpA-like helicas 95.9 0.09 2E-06 50.9 11.0 63 2-66 144-208 (845)
95 COG1111 MPH1 ERCC4-like helica 95.8 0.022 4.8E-07 51.7 6.1 67 1-69 111-178 (542)
96 KOG0920|consensus 95.4 0.2 4.4E-06 48.8 11.2 71 2-77 269-340 (924)
97 COG1203 CRISPR-associated heli 95.4 0.021 4.6E-07 54.4 4.7 55 24-78 340-395 (733)
98 KOG0354|consensus 95.2 0.044 9.6E-07 51.9 6.2 69 1-69 158-227 (746)
99 PRK04914 ATP-dependent helicas 95.2 0.15 3.3E-06 50.0 10.0 58 22-79 272-333 (956)
100 KOG3089|consensus 95.0 0.018 4E-07 47.1 2.6 27 2-29 201-227 (271)
101 TIGR00603 rad25 DNA repair hel 94.7 0.16 3.6E-06 48.4 8.4 40 21-65 374-413 (732)
102 KOG0922|consensus 94.4 0.51 1.1E-05 44.3 10.6 59 4-65 147-207 (674)
103 PRK13107 preprotein translocas 94.3 0.018 3.8E-07 55.7 1.2 36 1-36 175-216 (908)
104 PF04851 ResIII: Type III rest 94.2 0.091 2E-06 40.0 4.7 40 20-64 144-183 (184)
105 TIGR02562 cas3_yersinia CRISPR 94.1 0.051 1.1E-06 53.4 3.7 73 1-74 566-646 (1110)
106 KOG2340|consensus 93.9 0.024 5.2E-07 51.9 1.1 76 1-77 389-493 (698)
107 KOG0353|consensus 92.3 0.59 1.3E-05 41.6 7.2 75 2-76 191-273 (695)
108 KOG0352|consensus 91.5 0.21 4.6E-06 44.9 3.7 61 19-79 138-204 (641)
109 PF02463 SMC_N: RecF/RecN/SMC 90.4 0.3 6.5E-06 39.0 3.3 40 21-60 157-196 (220)
110 PF00176 SNF2_N: SNF2 family N 89.8 0.52 1.1E-05 38.9 4.4 46 22-70 134-180 (299)
111 PF13401 AAA_22: AAA domain; P 88.9 0.61 1.3E-05 33.7 3.8 36 24-61 89-124 (131)
112 PRK12906 secA preprotein trans 88.5 3.1 6.7E-05 40.3 9.0 34 153-188 417-450 (796)
113 KOG0925|consensus 88.1 5.5 0.00012 36.7 9.8 61 3-65 133-203 (699)
114 TIGR00596 rad1 DNA repair prot 87.9 1.1 2.4E-05 43.4 5.8 63 1-64 11-73 (814)
115 KOG0926|consensus 87.8 1.3 2.8E-05 42.9 5.9 59 4-64 356-425 (1172)
116 COG1198 PriA Primosomal protei 87.7 2 4.4E-05 41.2 7.2 47 19-66 310-362 (730)
117 PF07652 Flavi_DEAD: Flaviviru 86.0 1.9 4.2E-05 33.2 5.0 60 4-68 79-141 (148)
118 PF13872 AAA_34: P-loop contai 85.5 1 2.2E-05 38.7 3.6 67 5-77 158-232 (303)
119 KOG0949|consensus 84.6 1.3 2.9E-05 43.7 4.3 63 1-65 609-673 (1330)
120 PF02399 Herpes_ori_bp: Origin 84.1 3.7 8.1E-05 39.7 7.0 60 20-79 140-206 (824)
121 TIGR00348 hsdR type I site-spe 84.0 1.3 2.9E-05 41.9 4.1 59 1-63 342-402 (667)
122 COG1061 SSL2 DNA or RNA helica 84.0 1.1 2.4E-05 40.2 3.4 41 20-64 144-184 (442)
123 KOG0923|consensus 83.7 6.8 0.00015 37.4 8.3 60 4-66 362-423 (902)
124 PRK12900 secA preprotein trans 83.1 6.6 0.00014 39.0 8.4 35 152-188 574-608 (1025)
125 TIGR00963 secA preprotein tran 82.0 15 0.00033 35.4 10.2 34 153-188 382-415 (745)
126 cd00561 CobA_CobO_BtuR ATP:cor 81.7 3.2 7E-05 32.2 4.8 56 19-74 92-149 (159)
127 TIGR00708 cobA cob(I)alamin ad 81.5 3.1 6.6E-05 32.8 4.7 55 20-74 95-151 (173)
128 COG1110 Reverse gyrase [DNA re 81.4 9.8 0.00021 38.0 8.8 35 1-38 185-219 (1187)
129 KOG0991|consensus 81.0 2.1 4.5E-05 36.0 3.6 43 16-59 105-149 (333)
130 PHA02544 44 clamp loader, smal 80.9 2.5 5.5E-05 35.6 4.3 41 21-61 99-139 (316)
131 PRK06893 DNA replication initi 80.4 1.9 4.1E-05 35.1 3.3 47 20-66 89-137 (229)
132 PRK11448 hsdR type I restricti 80.4 3.3 7.2E-05 41.7 5.5 63 1-65 515-596 (1123)
133 COG1200 RecG RecG-like helicas 80.3 7 0.00015 37.1 7.2 45 16-65 378-423 (677)
134 PF09848 DUF2075: Uncharacteri 78.1 3 6.5E-05 36.1 4.0 54 19-73 80-148 (352)
135 PRK05986 cob(I)alamin adenolsy 74.9 6.4 0.00014 31.5 4.8 55 20-74 113-169 (191)
136 PF02572 CobA_CobO_BtuR: ATP:c 74.0 6.4 0.00014 31.0 4.5 56 19-74 93-150 (172)
137 PRK07414 cob(I)yrinic acid a,c 73.1 7.4 0.00016 30.8 4.7 55 20-74 113-169 (178)
138 PF05621 TniB: Bacterial TniB 72.7 4 8.6E-05 35.1 3.2 40 20-59 143-184 (302)
139 COG2109 BtuR ATP:corrinoid ade 72.1 11 0.00023 30.4 5.3 54 21-74 121-176 (198)
140 KOG0989|consensus 72.0 6.9 0.00015 33.9 4.5 43 19-62 126-168 (346)
141 KOG2170|consensus 71.7 5.7 0.00012 34.4 3.9 56 21-77 177-239 (344)
142 PF13304 AAA_21: AAA domain; P 71.2 4.8 0.0001 31.1 3.3 37 24-60 259-296 (303)
143 PLN03025 replication factor C 70.8 7 0.00015 33.3 4.4 44 21-66 98-141 (319)
144 KOG0990|consensus 70.4 4.8 0.0001 35.1 3.2 37 22-59 131-167 (360)
145 PF13173 AAA_14: AAA domain 69.8 6.8 0.00015 28.5 3.6 38 22-62 61-98 (128)
146 PRK05642 DNA replication initi 68.7 5.2 0.00011 32.6 3.1 47 20-66 95-143 (234)
147 TIGR03420 DnaA_homol_Hda DnaA 66.8 6.3 0.00014 31.2 3.1 43 21-63 89-132 (226)
148 PF00308 Bac_DnaA: Bacterial d 66.6 5.9 0.00013 32.0 2.9 49 20-68 95-145 (219)
149 PF05872 DUF853: Bacterial pro 65.5 14 0.00031 33.7 5.3 43 19-61 251-298 (502)
150 PRK12898 secA preprotein trans 65.3 2.9 6.3E-05 39.6 1.0 16 20-35 240-255 (656)
151 PF15586 Imm47: Immunity prote 65.1 6.2 0.00013 29.0 2.5 44 2-50 49-92 (116)
152 PRK07764 DNA polymerase III su 64.9 10 0.00022 37.0 4.6 47 21-69 119-165 (824)
153 PF00004 AAA: ATPase family as 64.8 14 0.0003 26.1 4.4 16 23-38 59-74 (132)
154 cd03239 ABC_SMC_head The struc 64.7 6.9 0.00015 30.6 2.9 42 20-61 114-156 (178)
155 KOG0385|consensus 64.3 10 0.00022 36.8 4.3 55 21-77 288-345 (971)
156 PRK10869 recombination and rep 64.3 7.1 0.00015 36.2 3.3 47 22-70 452-498 (553)
157 cd01120 RecA-like_NTPases RecA 64.3 11 0.00023 27.5 3.8 46 20-65 83-138 (165)
158 COG1197 Mfd Transcription-repa 63.9 27 0.00058 35.3 7.2 57 16-77 710-766 (1139)
159 TIGR00634 recN DNA repair prot 63.8 7.1 0.00015 36.2 3.3 40 22-61 462-501 (563)
160 PF01637 Arch_ATPase: Archaeal 63.2 12 0.00027 29.1 4.2 40 24-63 120-165 (234)
161 PRK12723 flagellar biosynthesi 63.2 18 0.00039 32.2 5.5 57 20-76 252-311 (388)
162 PRK00440 rfc replication facto 63.0 24 0.00051 29.4 6.1 39 21-60 101-139 (319)
163 PRK12422 chromosomal replicati 62.7 9.5 0.00021 34.4 3.8 54 20-73 200-255 (445)
164 PLN03142 Probable chromatin-re 62.2 23 0.0005 35.6 6.5 46 22-70 291-337 (1033)
165 cd03278 ABC_SMC_barmotin Barmo 62.1 11 0.00023 29.9 3.6 39 21-59 134-172 (197)
166 PRK07413 hypothetical protein; 62.0 12 0.00025 33.3 4.1 54 21-74 304-360 (382)
167 PRK12402 replication factor C 61.7 10 0.00022 32.0 3.6 39 21-60 124-162 (337)
168 PRK05298 excinuclease ABC subu 61.6 28 0.0006 33.0 6.8 27 160-188 430-456 (652)
169 PRK13107 preprotein translocas 61.4 33 0.00072 33.9 7.3 34 153-188 426-459 (908)
170 TIGR00362 DnaA chromosomal rep 61.0 7.9 0.00017 34.1 2.9 51 20-70 197-249 (405)
171 cd00009 AAA The AAA+ (ATPases 60.6 13 0.00028 26.2 3.6 30 20-50 82-111 (151)
172 PRK00149 dnaA chromosomal repl 60.2 9.6 0.00021 34.2 3.3 51 20-70 209-261 (450)
173 TIGR02673 FtsE cell division A 60.0 8 0.00017 30.5 2.5 54 20-73 153-206 (214)
174 PF13177 DNA_pol3_delta2: DNA 59.8 19 0.00041 27.6 4.5 45 21-67 101-145 (162)
175 PRK10536 hypothetical protein; 58.7 14 0.00029 31.2 3.7 34 24-61 178-211 (262)
176 cd03263 ABC_subfamily_A The AB 58.3 10 0.00022 30.1 2.9 53 20-73 149-201 (220)
177 cd03274 ABC_SMC4_euk Eukaryoti 58.2 13 0.00029 29.8 3.6 39 22-60 149-187 (212)
178 PF13604 AAA_30: AAA domain; P 57.6 20 0.00043 28.4 4.4 39 20-62 91-130 (196)
179 COG1196 Smc Chromosome segrega 57.4 12 0.00026 37.8 3.8 55 19-75 1085-1139(1163)
180 cd03273 ABC_SMC2_euk Eukaryoti 57.3 14 0.0003 30.2 3.6 51 21-73 187-237 (251)
181 KOG0964|consensus 57.1 8.6 0.00019 38.0 2.5 56 20-77 1117-1172(1200)
182 PRK14958 DNA polymerase III su 56.7 16 0.00034 33.6 4.1 42 21-64 118-159 (509)
183 PF07517 SecA_DEAD: SecA DEAD- 56.5 6 0.00013 33.3 1.3 34 2-35 171-210 (266)
184 cd00267 ABC_ATPase ABC (ATP-bi 56.5 9.3 0.0002 28.7 2.3 51 20-70 96-146 (157)
185 TIGR02169 SMC_prok_A chromosom 56.4 12 0.00025 37.2 3.5 42 21-62 1095-1136(1164)
186 TIGR03117 cas_csf4 CRISPR-asso 56.2 8.7 0.00019 36.4 2.4 34 2-36 187-220 (636)
187 PRK14088 dnaA chromosomal repl 56.0 15 0.00032 33.1 3.8 52 22-73 194-247 (440)
188 PRK08084 DNA replication initi 55.4 11 0.00024 30.7 2.6 46 21-66 96-144 (235)
189 cd03240 ABC_Rad50 The catalyti 55.2 14 0.00031 29.4 3.2 42 20-61 137-181 (204)
190 PRK07413 hypothetical protein; 54.5 23 0.0005 31.5 4.7 54 20-73 123-178 (382)
191 cd03226 ABC_cobalt_CbiO_domain 54.2 9.8 0.00021 29.9 2.1 53 20-72 142-194 (205)
192 TIGR00631 uvrb excinuclease AB 54.1 59 0.0013 30.9 7.6 29 159-189 425-453 (655)
193 PRK09112 DNA polymerase III su 54.1 16 0.00036 31.8 3.7 44 21-66 140-183 (351)
194 cd03269 ABC_putative_ATPase Th 53.7 12 0.00026 29.5 2.6 54 20-73 144-197 (210)
195 PRK07003 DNA polymerase III su 53.6 17 0.00038 35.3 4.0 45 21-67 118-162 (830)
196 PRK08727 hypothetical protein; 53.6 18 0.0004 29.3 3.7 48 20-67 91-140 (233)
197 PRK14087 dnaA chromosomal repl 53.5 13 0.00029 33.5 3.1 49 20-68 204-254 (450)
198 TIGR01447 recD exodeoxyribonuc 53.4 19 0.00041 33.8 4.1 38 21-62 258-295 (586)
199 PRK04195 replication factor C 53.3 13 0.00028 33.7 3.0 30 22-51 98-127 (482)
200 PRK11264 putative amino-acid A 53.1 13 0.00028 30.1 2.8 54 20-73 160-213 (250)
201 cd03275 ABC_SMC1_euk Eukaryoti 53.0 18 0.00039 29.5 3.6 41 21-61 176-217 (247)
202 COG0466 Lon ATP-dependent Lon 53.0 17 0.00037 34.9 3.8 44 3-50 402-445 (782)
203 PF02562 PhoH: PhoH-like prote 52.9 23 0.0005 28.6 4.1 35 24-62 121-155 (205)
204 COG0497 RecN ATPase involved i 52.9 11 0.00024 35.0 2.5 52 22-75 453-504 (557)
205 PRK08903 DnaA regulatory inact 52.5 16 0.00035 29.1 3.2 44 21-65 89-133 (227)
206 KOG4150|consensus 52.3 30 0.00066 32.8 5.2 56 20-75 410-473 (1034)
207 PRK14974 cell division protein 52.0 24 0.00053 30.7 4.4 56 21-76 221-277 (336)
208 KOG2004|consensus 51.9 20 0.00044 34.7 4.0 45 3-51 490-534 (906)
209 PRK12323 DNA polymerase III su 51.9 17 0.00037 34.8 3.6 45 21-67 123-167 (700)
210 TIGR02881 spore_V_K stage V sp 51.8 32 0.00069 28.3 4.9 45 24-68 107-156 (261)
211 TIGR02168 SMC_prok_B chromosom 51.7 17 0.00036 35.9 3.7 52 21-74 1110-1161(1179)
212 cd03225 ABC_cobalt_CbiO_domain 50.6 13 0.00029 29.2 2.4 53 20-72 150-202 (211)
213 COG1474 CDC6 Cdc6-related prot 50.5 53 0.0012 28.9 6.3 46 20-66 121-167 (366)
214 PRK00411 cdc6 cell division co 50.3 22 0.00047 30.9 3.9 28 23-50 139-166 (394)
215 PRK08691 DNA polymerase III su 50.3 27 0.00058 33.6 4.6 43 21-65 118-160 (709)
216 TIGR03522 GldA_ABC_ATP gliding 49.7 19 0.0004 30.4 3.3 54 20-74 149-202 (301)
217 KOG0390|consensus 49.4 1.1E+02 0.0024 29.9 8.6 52 18-72 372-424 (776)
218 cd03230 ABC_DR_subfamily_A Thi 49.4 14 0.0003 28.3 2.3 52 20-71 111-162 (173)
219 CHL00181 cbbX CbbX; Provisiona 49.3 35 0.00075 28.8 4.8 47 24-70 124-176 (287)
220 PRK13766 Hef nuclease; Provisi 49.0 18 0.00039 34.6 3.4 30 159-188 346-375 (773)
221 PRK06526 transposase; Provisio 48.9 23 0.00049 29.5 3.6 48 20-67 157-205 (254)
222 cd03266 ABC_NatA_sodium_export 48.7 15 0.00032 29.1 2.4 53 20-72 152-204 (218)
223 COG1131 CcmA ABC-type multidru 48.6 14 0.00031 31.2 2.4 53 20-72 152-205 (293)
224 TIGR03771 anch_rpt_ABC anchore 48.6 15 0.00033 29.4 2.4 53 20-72 129-181 (223)
225 KOG0740|consensus 48.5 26 0.00056 31.6 4.0 57 21-77 244-313 (428)
226 PRK14253 phosphate ABC transpo 48.4 16 0.00035 29.6 2.6 53 20-73 161-213 (249)
227 PRK14960 DNA polymerase III su 48.4 27 0.00059 33.4 4.4 43 21-65 117-159 (702)
228 cd03241 ABC_RecN RecN ATPase i 48.2 21 0.00046 29.7 3.3 42 21-62 191-232 (276)
229 PF12846 AAA_10: AAA-like doma 48.2 18 0.0004 29.4 2.9 42 21-63 219-261 (304)
230 TIGR00972 3a0107s01c2 phosphat 48.1 17 0.00036 29.5 2.7 54 20-74 160-213 (247)
231 cd03218 ABC_YhbG The ABC trans 48.1 16 0.00034 29.2 2.5 54 20-73 149-202 (232)
232 PRK14086 dnaA chromosomal repl 48.1 17 0.00037 34.3 2.9 51 20-70 375-427 (617)
233 TIGR03740 galliderm_ABC gallid 47.9 18 0.00038 28.8 2.7 54 20-73 140-193 (223)
234 cd03229 ABC_Class3 This class 47.8 14 0.0003 28.5 2.0 53 20-72 116-169 (178)
235 KOG0018|consensus 47.8 29 0.00064 34.7 4.5 42 16-61 1069-1110(1141)
236 PRK12903 secA preprotein trans 47.6 2.3E+02 0.0049 28.3 10.4 33 153-187 403-435 (925)
237 cd03215 ABC_Carb_Monos_II This 47.5 18 0.00038 28.0 2.6 53 20-72 120-172 (182)
238 cd03216 ABC_Carb_Monos_I This 47.2 17 0.00037 27.6 2.4 53 20-72 98-150 (163)
239 PF13086 AAA_11: AAA domain; P 47.1 14 0.00031 28.7 2.0 16 22-37 192-207 (236)
240 cd03228 ABCC_MRP_Like The MRP 47.0 27 0.00058 26.7 3.5 42 20-62 112-153 (171)
241 PRK09493 glnQ glutamine ABC tr 46.6 18 0.00038 29.2 2.6 54 20-73 152-205 (240)
242 TIGR00960 3a0501s02 Type II (G 46.6 18 0.00039 28.6 2.6 53 20-72 154-206 (216)
243 TIGR01277 thiQ thiamine ABC tr 46.6 15 0.00033 29.0 2.1 53 20-72 144-197 (213)
244 PRK14959 DNA polymerase III su 46.4 40 0.00086 32.0 5.1 44 21-68 118-163 (624)
245 KOG0354|consensus 46.3 22 0.00048 34.3 3.4 30 159-188 394-423 (746)
246 PRK04132 replication factor C 46.2 24 0.00053 34.6 3.8 44 22-67 630-673 (846)
247 PRK13543 cytochrome c biogenes 46.1 19 0.0004 28.6 2.6 54 20-73 153-206 (214)
248 KOG0951|consensus 46.1 77 0.0017 32.9 7.1 56 1-63 1238-1299(1674)
249 cd03219 ABC_Mj1267_LivG_branch 45.8 18 0.00039 29.0 2.5 53 20-72 159-211 (236)
250 KOG0924|consensus 45.5 31 0.00066 33.4 4.1 54 19-75 465-520 (1042)
251 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 45.2 19 0.00041 28.9 2.5 53 20-72 158-210 (224)
252 PRK06620 hypothetical protein; 44.7 23 0.00051 28.5 3.0 43 21-67 84-127 (214)
253 PRK07471 DNA polymerase III su 44.7 30 0.00064 30.4 3.8 39 21-60 140-178 (365)
254 PRK10875 recD exonuclease V su 44.6 28 0.00061 32.9 3.8 38 21-62 264-301 (615)
255 PRK14260 phosphate ABC transpo 44.6 26 0.00055 28.7 3.3 53 20-73 166-218 (259)
256 PRK14965 DNA polymerase III su 44.6 35 0.00075 31.9 4.4 47 20-68 117-163 (576)
257 cd03260 ABC_PstB_phosphate_tra 44.4 22 0.00048 28.3 2.8 53 20-73 157-209 (227)
258 PRK08451 DNA polymerase III su 44.3 29 0.00062 32.3 3.8 45 20-66 115-159 (535)
259 cd03262 ABC_HisP_GlnQ_permease 44.3 19 0.00041 28.3 2.3 53 20-72 151-203 (213)
260 COG2909 MalT ATP-dependent tra 44.3 32 0.00069 33.8 4.2 45 21-65 128-172 (894)
261 PRK14949 DNA polymerase III su 44.2 32 0.0007 34.1 4.2 46 21-68 118-163 (944)
262 PRK12902 secA preprotein trans 44.1 12 0.00027 36.8 1.4 34 2-35 179-218 (939)
263 PRK13103 secA preprotein trans 44.1 9.7 0.00021 37.5 0.7 34 2-35 176-215 (913)
264 cd03213 ABCG_EPDR ABCG transpo 44.1 25 0.00054 27.5 3.0 54 20-73 127-181 (194)
265 TIGR00678 holB DNA polymerase 44.1 35 0.00076 26.3 3.8 41 20-62 94-134 (188)
266 PRK11124 artP arginine transpo 43.8 20 0.00043 28.9 2.5 54 20-73 157-210 (242)
267 PRK13537 nodulation ABC transp 43.7 20 0.00043 30.4 2.5 55 20-74 154-208 (306)
268 PRK14964 DNA polymerase III su 43.6 40 0.00087 31.0 4.6 46 20-67 114-159 (491)
269 PRK14969 DNA polymerase III su 43.4 26 0.00057 32.3 3.4 39 21-60 118-156 (527)
270 PRK13536 nodulation factor exp 43.4 19 0.00041 31.2 2.4 55 20-74 188-242 (340)
271 PRK11034 clpA ATP-dependent Cl 43.3 31 0.00068 33.4 4.0 45 24-68 280-328 (758)
272 PRK14239 phosphate transporter 43.2 24 0.00052 28.6 2.9 54 20-74 164-217 (252)
273 TIGR01448 recD_rel helicase, p 43.2 32 0.00069 33.1 4.0 38 21-62 415-452 (720)
274 TIGR01184 ntrCD nitrate transp 43.1 18 0.00038 29.1 2.1 55 20-74 130-185 (230)
275 TIGR02324 CP_lyasePhnL phospho 43.1 23 0.0005 28.1 2.7 53 20-72 165-217 (224)
276 PRK04841 transcriptional regul 43.0 30 0.00066 33.3 3.9 45 21-65 120-164 (903)
277 cd03244 ABCC_MRP_domain2 Domai 42.9 33 0.00071 27.1 3.6 47 20-67 155-201 (221)
278 cd03300 ABC_PotA_N PotA is an 42.4 17 0.00037 29.2 1.8 55 20-74 146-201 (232)
279 cd03235 ABC_Metallic_Cations A 42.3 22 0.00047 28.0 2.4 54 20-73 148-201 (213)
280 COG1111 MPH1 ERCC4-like helica 42.3 29 0.00062 32.1 3.4 29 160-188 348-376 (542)
281 cd03298 ABC_ThiQ_thiamine_tran 42.2 21 0.00044 28.1 2.3 54 20-73 144-198 (211)
282 cd03259 ABC_Carb_Solutes_like 42.2 19 0.00041 28.4 2.0 54 20-73 146-200 (213)
283 COG4555 NatA ABC-type Na+ tran 42.1 40 0.00087 27.8 3.9 56 20-75 149-204 (245)
284 PRK07940 DNA polymerase III su 41.9 40 0.00086 30.0 4.2 48 20-69 115-162 (394)
285 cd03231 ABC_CcmA_heme_exporter 41.9 25 0.00053 27.6 2.7 50 20-69 141-190 (201)
286 cd03251 ABCC_MsbA MsbA is an e 41.8 34 0.00074 27.3 3.5 47 20-67 154-200 (234)
287 PRK04296 thymidine kinase; Pro 41.7 28 0.0006 27.3 2.9 38 21-62 77-114 (190)
288 PRK14243 phosphate transporter 41.6 28 0.00062 28.6 3.1 53 20-73 167-219 (264)
289 cd03232 ABC_PDR_domain2 The pl 41.5 26 0.00056 27.3 2.7 52 20-71 124-176 (192)
290 COG0470 HolB ATPase involved i 41.4 33 0.00071 28.5 3.5 48 20-69 107-154 (325)
291 PRK11231 fecE iron-dicitrate t 41.4 26 0.00057 28.5 2.8 55 20-74 154-208 (255)
292 cd03217 ABC_FeS_Assembly ABC-t 41.4 21 0.00045 28.1 2.2 50 20-69 120-169 (200)
293 PRK15483 type III restriction- 41.3 24 0.00053 35.1 3.0 35 25-65 204-240 (986)
294 cd03234 ABCG_White The White s 41.1 24 0.00053 28.1 2.6 55 20-74 159-214 (226)
295 TIGR01407 dinG_rel DnaQ family 40.5 77 0.0017 31.0 6.3 24 164-188 661-684 (850)
296 TIGR03411 urea_trans_UrtD urea 40.2 27 0.00058 28.1 2.7 53 20-73 159-211 (242)
297 PRK14245 phosphate ABC transpo 40.1 29 0.00062 28.2 2.9 53 20-73 162-214 (250)
298 PRK14273 phosphate ABC transpo 40.0 30 0.00065 28.1 3.0 53 20-73 166-218 (254)
299 TIGR03873 F420-0_ABC_ATP propo 40.0 26 0.00056 28.6 2.6 55 20-74 153-207 (256)
300 smart00489 DEXDc3 DEAD-like he 39.9 13 0.00029 31.4 0.8 15 23-37 237-251 (289)
301 smart00488 DEXDc2 DEAD-like he 39.9 13 0.00029 31.4 0.8 15 23-37 237-251 (289)
302 PRK14259 phosphate ABC transpo 39.9 31 0.00068 28.5 3.1 54 20-74 170-223 (269)
303 cd03252 ABCC_Hemolysin The ABC 39.4 37 0.00081 27.2 3.4 46 20-66 154-199 (237)
304 PRK11614 livF leucine/isoleuci 39.4 23 0.00051 28.4 2.2 54 20-73 153-206 (237)
305 PRK10895 lipopolysaccharide AB 39.3 26 0.00057 28.2 2.5 54 20-73 153-206 (241)
306 KOG0933|consensus 39.1 30 0.00065 34.5 3.1 45 18-62 1100-1144(1174)
307 cd03224 ABC_TM1139_LivF_branch 39.1 28 0.0006 27.5 2.6 54 20-73 148-201 (222)
308 TIGR02315 ABC_phnC phosphonate 39.0 23 0.0005 28.5 2.1 54 20-73 161-215 (243)
309 PRK13638 cbiO cobalt transport 39.0 24 0.00052 29.1 2.3 53 20-72 152-204 (271)
310 PRK13643 cbiO cobalt transport 38.6 24 0.00053 29.5 2.3 53 20-72 160-212 (288)
311 cd03254 ABCC_Glucan_exporter_l 38.5 41 0.0009 26.7 3.5 43 20-63 155-197 (229)
312 cd03268 ABC_BcrA_bacitracin_re 38.5 29 0.00063 27.2 2.6 53 20-72 142-194 (208)
313 PRK14246 phosphate ABC transpo 38.4 35 0.00077 28.0 3.2 51 20-71 169-219 (257)
314 KOG0952|consensus 38.4 10 0.00022 37.9 -0.0 75 1-77 1024-1106(1230)
315 PRK14263 phosphate ABC transpo 38.4 34 0.00073 28.2 3.1 53 20-73 165-217 (261)
316 PRK13649 cbiO cobalt transport 38.4 25 0.00054 29.2 2.3 54 20-73 161-214 (280)
317 cd03292 ABC_FtsE_transporter F 38.3 29 0.00062 27.3 2.5 53 20-72 152-204 (214)
318 TIGR00968 3a0106s01 sulfate AB 38.3 23 0.0005 28.6 2.0 55 20-74 146-201 (237)
319 cd03264 ABC_drug_resistance_li 38.1 35 0.00076 26.8 3.0 52 20-72 146-197 (211)
320 PRK14952 DNA polymerase III su 38.1 49 0.0011 31.1 4.3 47 20-68 116-162 (584)
321 PRK14873 primosome assembly pr 38.0 1.8E+02 0.0039 27.8 8.2 52 19-71 254-311 (665)
322 COG1124 DppF ABC-type dipeptid 38.0 25 0.00054 29.5 2.1 36 21-56 158-193 (252)
323 COG1875 NYN ribonuclease and A 37.9 38 0.00082 30.3 3.3 33 24-60 353-385 (436)
324 KOG2543|consensus 37.8 59 0.0013 29.2 4.5 47 21-67 114-162 (438)
325 PRK14961 DNA polymerase III su 37.6 35 0.00075 29.7 3.1 45 21-67 118-162 (363)
326 PRK13639 cbiO cobalt transport 37.6 29 0.00064 28.7 2.6 53 20-72 153-205 (275)
327 PRK14254 phosphate ABC transpo 37.3 34 0.00073 28.6 2.9 53 20-73 196-248 (285)
328 TIGR01978 sufC FeS assembly AT 37.3 29 0.00064 27.8 2.5 51 20-70 160-210 (243)
329 TIGR00604 rad3 DNA repair heli 37.0 1.4E+02 0.003 28.6 7.3 24 164-188 509-532 (705)
330 TIGR01188 drrA daunorubicin re 36.8 28 0.00062 29.3 2.4 55 20-74 140-194 (302)
331 cd03249 ABC_MTABC3_MDL1_MDL2 M 36.8 46 0.001 26.6 3.6 46 20-66 155-200 (238)
332 PF13514 AAA_27: AAA domain 36.7 53 0.0011 33.1 4.6 51 25-77 1054-1104(1111)
333 PRK10908 cell division protein 36.7 29 0.00062 27.6 2.3 53 20-72 153-205 (222)
334 PRK10619 histidine/lysine/argi 36.5 30 0.00065 28.2 2.5 53 20-72 168-220 (257)
335 TIGR01407 dinG_rel DnaQ family 36.5 29 0.00062 33.9 2.7 16 21-36 439-454 (850)
336 cd03214 ABC_Iron-Siderophores_ 36.4 28 0.0006 26.8 2.1 54 20-73 113-167 (180)
337 TIGR02397 dnaX_nterm DNA polym 36.2 41 0.00088 28.6 3.3 17 20-36 115-131 (355)
338 cd03258 ABC_MetN_methionine_tr 36.0 25 0.00055 28.1 1.9 54 20-73 156-210 (233)
339 cd03261 ABC_Org_Solvent_Resist 35.9 28 0.00061 27.9 2.2 54 20-73 152-206 (235)
340 cd03272 ABC_SMC3_euk Eukaryoti 35.9 39 0.00085 27.1 3.0 53 21-75 179-231 (243)
341 PRK14241 phosphate transporter 35.8 36 0.00077 27.8 2.8 54 20-74 164-217 (258)
342 cd03247 ABCC_cytochrome_bd The 35.8 49 0.0011 25.3 3.4 41 20-61 114-154 (178)
343 COG4096 HsdR Type I site-speci 35.6 20 0.00042 35.0 1.3 60 2-67 261-324 (875)
344 cd03255 ABC_MJ0796_Lo1CDE_FtsE 35.5 35 0.00075 26.9 2.6 48 20-67 156-204 (218)
345 TIGR03410 urea_trans_UrtE urea 35.4 30 0.00064 27.6 2.2 53 20-72 147-200 (230)
346 PRK14970 DNA polymerase III su 35.4 56 0.0012 28.2 4.1 17 20-36 106-122 (367)
347 PRK14240 phosphate transporter 35.1 44 0.00095 27.0 3.2 52 20-72 162-213 (250)
348 PRK14261 phosphate ABC transpo 35.0 37 0.0008 27.6 2.8 53 20-73 165-217 (253)
349 PRK14235 phosphate transporter 35.0 36 0.00077 28.1 2.7 53 20-73 179-231 (267)
350 cd03267 ABC_NatA_like Similar 35.0 34 0.00073 27.6 2.5 54 20-73 169-223 (236)
351 cd03297 ABC_ModC_molybdenum_tr 35.0 28 0.00062 27.4 2.0 54 20-73 147-201 (214)
352 cd03289 ABCC_CFTR2 The CFTR su 34.7 52 0.0011 27.5 3.7 41 20-60 154-194 (275)
353 PF05707 Zot: Zonular occluden 34.6 64 0.0014 25.2 4.0 54 22-75 79-137 (193)
354 PRK07994 DNA polymerase III su 34.5 52 0.0011 31.4 3.9 46 21-68 118-163 (647)
355 TIGR01288 nodI ATP-binding ABC 34.5 31 0.00067 29.1 2.3 54 20-73 151-204 (303)
356 cd03276 ABC_SMC6_euk Eukaryoti 34.4 35 0.00076 27.0 2.4 50 20-69 129-181 (198)
357 PHA02562 46 endonuclease subun 34.2 50 0.0011 30.1 3.7 41 21-62 495-536 (562)
358 PRK09111 DNA polymerase III su 34.1 68 0.0015 30.2 4.6 40 20-60 130-169 (598)
359 PRK08769 DNA polymerase III su 34.1 58 0.0013 28.1 3.9 40 21-61 112-151 (319)
360 cd03301 ABC_MalK_N The N-termi 34.0 28 0.0006 27.4 1.8 53 20-72 146-199 (213)
361 PRK14269 phosphate ABC transpo 34.0 49 0.0011 26.8 3.3 51 20-71 158-208 (246)
362 cd03245 ABCC_bacteriocin_expor 33.9 55 0.0012 25.8 3.6 42 20-62 156-197 (220)
363 cd03248 ABCC_TAP TAP, the Tran 33.9 53 0.0011 26.1 3.5 43 20-63 166-208 (226)
364 PRK13342 recombination factor 33.6 72 0.0016 28.2 4.6 37 22-63 92-128 (413)
365 PRK03695 vitamin B12-transport 33.6 36 0.00079 27.7 2.5 53 22-74 151-203 (248)
366 cd03221 ABCF_EF-3 ABCF_EF-3 E 33.4 51 0.0011 24.5 3.1 48 20-70 86-133 (144)
367 PRK14957 DNA polymerase III su 33.3 52 0.0011 30.7 3.7 40 20-60 117-156 (546)
368 PRK13631 cbiO cobalt transport 33.3 32 0.00069 29.5 2.2 54 20-73 192-245 (320)
369 TIGR02928 orc1/cdc6 family rep 33.2 55 0.0012 27.9 3.7 26 22-48 129-154 (365)
370 PHA03368 DNA packaging termina 33.2 57 0.0012 31.4 3.9 40 22-65 352-392 (738)
371 PRK06731 flhF flagellar biosyn 33.1 96 0.0021 26.1 5.0 57 21-77 153-211 (270)
372 PRK15056 manganese/iron transp 33.0 40 0.00086 27.9 2.7 54 20-73 158-211 (272)
373 PRK14267 phosphate ABC transpo 32.9 43 0.00093 27.1 2.8 53 20-73 165-217 (253)
374 TIGR03687 pupylate_cterm ubiqu 32.9 14 0.00029 21.0 -0.1 21 27-47 8-28 (33)
375 TIGR02770 nickel_nikD nickel i 32.9 31 0.00068 27.6 2.0 55 20-74 141-196 (230)
376 PRK14242 phosphate transporter 32.7 44 0.00096 27.1 2.9 53 20-73 165-217 (253)
377 cd03369 ABCC_NFT1 Domain 2 of 32.5 56 0.0012 25.5 3.4 39 20-59 141-179 (207)
378 cd03293 ABC_NrtD_SsuB_transpor 32.5 32 0.0007 27.2 2.0 54 20-73 147-201 (220)
379 PRK13538 cytochrome c biogenes 32.4 42 0.00091 26.3 2.6 46 20-65 145-190 (204)
380 PRK14951 DNA polymerase III su 32.3 47 0.001 31.5 3.2 45 21-67 123-167 (618)
381 cd03257 ABC_NikE_OppD_transpor 32.3 33 0.00072 27.2 2.0 53 20-72 161-214 (228)
382 PRK09544 znuC high-affinity zi 32.2 33 0.00073 28.1 2.1 53 20-72 136-189 (251)
383 PRK14275 phosphate ABC transpo 32.2 46 0.00099 27.8 2.9 54 20-74 198-251 (286)
384 PF05729 NACHT: NACHT domain 32.1 79 0.0017 23.0 4.0 39 25-63 84-130 (166)
385 TIGR01189 ccmA heme ABC export 32.1 40 0.00086 26.3 2.4 45 20-64 143-187 (198)
386 cd03256 ABC_PhnC_transporter A 31.9 34 0.00075 27.4 2.1 54 20-73 160-214 (241)
387 PRK14962 DNA polymerase III su 31.9 78 0.0017 28.8 4.5 16 20-35 115-130 (472)
388 PRK13652 cbiO cobalt transport 31.7 36 0.00077 28.3 2.2 55 20-74 153-208 (277)
389 cd03296 ABC_CysA_sulfate_impor 31.6 33 0.00071 27.6 1.9 54 20-73 152-206 (239)
390 PRK09087 hypothetical protein; 31.6 53 0.0012 26.6 3.2 41 24-66 89-130 (226)
391 PRK14247 phosphate ABC transpo 31.6 53 0.0012 26.5 3.2 53 20-73 162-214 (250)
392 PRK06871 DNA polymerase III su 31.6 92 0.002 27.0 4.7 39 20-59 105-143 (325)
393 TIGR03608 L_ocin_972_ABC putat 31.4 46 0.001 25.9 2.7 43 20-62 150-192 (206)
394 PRK08058 DNA polymerase III su 31.4 53 0.0012 28.2 3.3 45 20-66 108-152 (329)
395 PRK13541 cytochrome c biogenes 31.3 48 0.001 25.8 2.8 46 20-65 139-184 (195)
396 PRK14266 phosphate ABC transpo 31.3 53 0.0012 26.5 3.1 53 20-73 162-214 (250)
397 cd03253 ABCC_ATM1_transporter 31.1 64 0.0014 25.7 3.5 47 20-67 153-199 (236)
398 PRK14953 DNA polymerase III su 31.1 56 0.0012 29.9 3.5 42 20-63 117-158 (486)
399 PRK14963 DNA polymerase III su 31.1 57 0.0012 30.0 3.6 28 20-51 114-141 (504)
400 TIGR02982 heterocyst_DevA ABC 31.1 39 0.00085 26.8 2.3 43 20-62 157-200 (220)
401 PRK14722 flhF flagellar biosyn 31.0 88 0.0019 27.7 4.6 57 20-76 213-271 (374)
402 PRK13651 cobalt transporter AT 31.0 34 0.00074 29.1 2.0 54 20-73 181-234 (305)
403 cd01611 GABARAP Ubiquitin doma 31.0 2.1E+02 0.0045 20.8 7.6 64 123-187 15-78 (112)
404 PRK14971 DNA polymerase III su 31.0 72 0.0016 30.1 4.3 47 20-68 119-165 (614)
405 PRK15112 antimicrobial peptide 31.0 33 0.00071 28.3 1.8 53 20-72 165-218 (267)
406 cd03222 ABC_RNaseL_inhibitor T 31.0 40 0.00086 26.4 2.2 54 20-73 87-141 (177)
407 PRK14256 phosphate ABC transpo 30.9 52 0.0011 26.6 3.0 52 20-72 164-215 (252)
408 PRK14270 phosphate ABC transpo 30.8 43 0.00094 27.1 2.5 53 20-73 163-215 (251)
409 PRK13647 cbiO cobalt transport 30.7 39 0.00085 28.0 2.3 54 20-73 154-207 (274)
410 PF13558 SbcCD_C: Putative exo 30.7 48 0.001 22.8 2.4 29 19-47 60-88 (90)
411 PRK13646 cbiO cobalt transport 30.5 33 0.00072 28.6 1.8 54 20-73 161-215 (286)
412 PRK06964 DNA polymerase III su 30.4 94 0.002 27.1 4.6 17 20-36 130-146 (342)
413 smart00382 AAA ATPases associa 30.3 72 0.0016 21.8 3.4 22 23-44 79-100 (148)
414 cd03299 ABC_ModC_like Archeal 30.2 37 0.00081 27.3 2.0 55 20-74 145-200 (235)
415 PRK14272 phosphate ABC transpo 30.1 56 0.0012 26.4 3.0 53 20-73 164-216 (252)
416 cd03233 ABC_PDR_domain1 The pl 30.1 49 0.0011 26.0 2.7 54 20-73 134-189 (202)
417 PRK14244 phosphate ABC transpo 30.0 56 0.0012 26.5 3.0 52 20-72 165-216 (251)
418 PTZ00112 origin recognition co 30.0 74 0.0016 32.0 4.2 41 21-62 868-909 (1164)
419 PRK14251 phosphate ABC transpo 29.9 53 0.0011 26.6 2.9 52 20-72 163-214 (251)
420 PRK13548 hmuV hemin importer A 29.9 49 0.0011 27.1 2.7 52 22-73 158-210 (258)
421 PRK14271 phosphate ABC transpo 29.8 50 0.0011 27.4 2.8 54 20-74 179-232 (276)
422 PRK14956 DNA polymerase III su 29.8 59 0.0013 29.9 3.4 44 22-67 121-164 (484)
423 PF03266 NTPase_1: NTPase; In 29.8 94 0.002 24.0 4.1 40 21-66 94-135 (168)
424 PRK14262 phosphate ABC transpo 29.8 55 0.0012 26.4 3.0 53 20-73 162-214 (250)
425 PRK13634 cbiO cobalt transport 29.8 34 0.00075 28.6 1.8 54 20-73 161-215 (290)
426 PRK14265 phosphate ABC transpo 29.5 54 0.0012 27.2 2.9 54 20-74 177-230 (274)
427 PRK14258 phosphate ABC transpo 29.4 40 0.00086 27.6 2.1 54 20-73 166-220 (261)
428 TIGR00763 lon ATP-dependent pr 29.3 69 0.0015 31.0 3.9 30 4-37 400-429 (775)
429 PRK14252 phosphate ABC transpo 29.2 53 0.0012 26.9 2.8 51 20-71 177-227 (265)
430 cd03294 ABC_Pro_Gly_Bertaine T 29.2 41 0.00089 27.8 2.1 54 20-73 176-230 (269)
431 PRK07276 DNA polymerase III su 29.0 98 0.0021 26.4 4.4 16 21-36 103-118 (290)
432 PRK13641 cbiO cobalt transport 28.7 45 0.00097 27.9 2.3 54 20-73 161-214 (287)
433 COG2842 Uncharacterized ATPase 28.7 19 0.00041 30.9 -0.0 46 4-50 147-192 (297)
434 PRK13540 cytochrome c biogenes 28.7 50 0.0011 25.8 2.5 41 20-60 143-184 (200)
435 cd03227 ABC_Class2 ABC-type Cl 28.1 73 0.0016 24.1 3.2 50 21-72 98-148 (162)
436 PRK10744 pstB phosphate transp 28.1 58 0.0013 26.6 2.8 53 20-73 172-224 (260)
437 PRK05707 DNA polymerase III su 28.1 77 0.0017 27.3 3.7 38 20-58 104-141 (328)
438 TIGR03346 chaperone_ClpB ATP-d 28.0 72 0.0016 31.3 3.8 47 22-68 266-315 (852)
439 PRK14255 phosphate ABC transpo 27.9 54 0.0012 26.5 2.6 53 20-73 164-216 (252)
440 PRK09580 sufC cysteine desulfu 27.2 56 0.0012 26.3 2.6 50 20-69 161-210 (248)
441 PRK14274 phosphate ABC transpo 27.2 72 0.0016 26.0 3.2 52 20-72 171-222 (259)
442 PF03354 Terminase_1: Phage Te 27.1 63 0.0014 29.2 3.1 40 22-62 123-163 (477)
443 PRK13341 recombination factor 27.1 1.2E+02 0.0026 29.3 5.1 44 22-70 109-152 (725)
444 PF05717 TnpB_IS66: IS66 Orf2 27.0 1.7E+02 0.0038 20.9 4.9 39 151-189 3-45 (107)
445 PRK13547 hmuV hemin importer A 27.0 50 0.0011 27.5 2.3 53 21-73 171-224 (272)
446 PRK14268 phosphate ABC transpo 27.0 65 0.0014 26.3 3.0 52 20-72 170-221 (258)
447 PF04273 DUF442: Putative phos 26.9 1.3E+02 0.0028 21.7 4.1 41 147-188 56-96 (110)
448 PRK07993 DNA polymerase III su 26.8 1.4E+02 0.003 25.8 5.1 27 20-50 106-132 (334)
449 TIGR02880 cbbX_cfxQ probable R 26.7 1.3E+02 0.0027 25.3 4.7 47 24-70 123-175 (284)
450 PRK14248 phosphate ABC transpo 26.7 60 0.0013 26.7 2.7 53 20-73 180-232 (268)
451 PRK05896 DNA polymerase III su 26.5 90 0.0019 29.6 4.0 45 21-67 118-162 (605)
452 PRK13539 cytochrome c biogenes 26.5 61 0.0013 25.5 2.6 49 20-68 143-191 (207)
453 PF04110 APG12: Ubiquitin-like 26.4 86 0.0019 21.9 3.0 42 146-187 12-53 (87)
454 PRK06305 DNA polymerase III su 26.3 76 0.0017 28.7 3.5 37 21-58 120-156 (451)
455 cd03290 ABCC_SUR1_N The SUR do 26.2 88 0.0019 24.6 3.5 43 20-62 156-200 (218)
456 cd03265 ABC_DrrA DrrA is the A 26.1 56 0.0012 25.8 2.3 53 20-72 147-200 (220)
457 PRK14250 phosphate ABC transpo 26.1 53 0.0011 26.5 2.2 54 20-73 147-201 (241)
458 PRK14950 DNA polymerase III su 26.0 1.1E+02 0.0023 28.7 4.5 42 20-63 118-159 (585)
459 PRK14249 phosphate ABC transpo 26.0 66 0.0014 26.0 2.8 54 20-74 163-216 (251)
460 PRK11747 dinG ATP-dependent DN 25.9 30 0.00066 33.0 0.8 14 23-36 247-260 (697)
461 cd03277 ABC_SMC5_euk Eukaryoti 25.9 74 0.0016 25.5 3.0 41 21-61 147-190 (213)
462 PRK05563 DNA polymerase III su 25.8 73 0.0016 29.6 3.3 47 20-68 117-163 (559)
463 PRK10865 protein disaggregatio 25.7 81 0.0018 31.0 3.7 45 24-68 273-320 (857)
464 PRK08181 transposase; Validate 25.7 80 0.0017 26.5 3.3 48 20-67 165-213 (269)
465 TIGR00929 VirB4_CagE type IV s 25.6 1.4E+02 0.003 28.6 5.3 62 22-84 629-694 (785)
466 PRK11248 tauB taurine transpor 25.6 57 0.0012 26.7 2.4 53 20-72 144-197 (255)
467 PRK14238 phosphate transporter 25.2 64 0.0014 26.6 2.6 53 20-73 183-235 (271)
468 PRK11153 metN DL-methionine tr 25.2 49 0.0011 28.6 2.0 53 20-72 156-209 (343)
469 PRK14237 phosphate transporter 25.1 73 0.0016 26.2 2.9 52 20-72 179-230 (267)
470 PRK02224 chromosome segregatio 25.0 58 0.0013 31.7 2.6 40 23-62 812-853 (880)
471 PRK05564 DNA polymerase III su 24.8 83 0.0018 26.6 3.3 46 20-67 91-136 (313)
472 PRK07399 DNA polymerase III su 24.7 1.1E+02 0.0023 26.2 4.0 39 20-60 122-160 (314)
473 TIGR02769 nickel_nikE nickel i 24.7 60 0.0013 26.6 2.3 54 20-73 166-220 (265)
474 cd03295 ABC_OpuCA_Osmoprotecti 24.7 51 0.0011 26.5 1.9 53 20-72 151-204 (242)
475 TIGR03005 ectoine_ehuA ectoine 24.6 59 0.0013 26.3 2.2 54 20-73 162-216 (252)
476 cd03288 ABCC_SUR2 The SUR doma 24.6 97 0.0021 25.2 3.6 47 20-67 172-218 (257)
477 PRK09984 phosphonate/organopho 24.5 54 0.0012 26.8 2.0 54 20-73 168-222 (262)
478 PRK11300 livG leucine/isoleuci 24.4 60 0.0013 26.3 2.3 54 20-73 169-223 (255)
479 PRK10253 iron-enterobactin tra 24.4 61 0.0013 26.6 2.3 55 20-74 159-214 (265)
480 PF09439 SRPRB: Signal recogni 24.3 95 0.0021 24.6 3.3 25 163-187 97-121 (181)
481 PRK14948 DNA polymerase III su 24.3 83 0.0018 29.8 3.4 15 21-35 120-134 (620)
482 cd03246 ABCC_Protease_Secretio 24.1 85 0.0018 23.9 2.9 42 20-61 112-153 (173)
483 PRK13695 putative NTPase; Prov 24.0 77 0.0017 24.1 2.7 53 20-77 94-148 (174)
484 TIGR02639 ClpA ATP-dependent C 24.0 1E+02 0.0023 29.6 4.1 44 24-67 276-323 (731)
485 TIGR01166 cbiO cobalt transpor 23.9 68 0.0015 24.7 2.4 42 20-61 143-184 (190)
486 PRK06090 DNA polymerase III su 23.7 1.6E+02 0.0036 25.3 4.9 16 20-35 106-121 (319)
487 PF05970 PIF1: PIF1-like helic 23.5 63 0.0014 28.1 2.3 31 19-50 99-129 (364)
488 cd03279 ABC_sbcCD SbcCD and ot 23.3 82 0.0018 24.9 2.8 49 22-70 151-199 (213)
489 COG0593 DnaA ATPase involved i 23.1 84 0.0018 28.2 3.0 49 22-70 175-225 (408)
490 PRK10575 iron-hydroxamate tran 23.0 65 0.0014 26.4 2.2 54 20-73 163-217 (265)
491 PRK06647 DNA polymerase III su 22.9 1.7E+02 0.0038 27.3 5.2 44 20-67 117-162 (563)
492 PRK05703 flhF flagellar biosyn 22.8 2E+02 0.0042 25.8 5.4 69 4-77 286-357 (424)
493 PRK07246 bifunctional ATP-depe 22.8 70 0.0015 31.3 2.7 17 20-36 434-450 (820)
494 PRK11701 phnK phosphonate C-P 22.7 66 0.0014 26.2 2.2 54 20-73 167-221 (258)
495 PRK14236 phosphate transporter 22.7 80 0.0017 26.0 2.7 53 20-73 184-236 (272)
496 PRK13636 cbiO cobalt transport 22.5 55 0.0012 27.3 1.7 53 20-72 157-210 (283)
497 TIGR01187 potA spermidine/putr 22.4 56 0.0012 27.9 1.8 53 20-72 116-169 (325)
498 cd03223 ABCD_peroxisomal_ALDP 22.4 1.2E+02 0.0025 23.0 3.4 31 20-50 107-137 (166)
499 PRK06645 DNA polymerase III su 22.3 1.3E+02 0.0029 27.7 4.3 45 21-67 127-171 (507)
500 PRK14264 phosphate ABC transpo 22.3 93 0.002 26.2 3.1 53 20-73 216-268 (305)
No 1
>KOG0330|consensus
Probab=99.96 E-value=3.6e-29 Score=214.26 Aligned_cols=128 Identities=40% Similarity=0.662 Sum_probs=120.9
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
||||||||++|+.+.+.++++.++|+|+||||++|++.|.+.+..|++.+|..+|++|||||||..|.++.+..+++
T Consensus 183 lVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~--- 259 (476)
T KOG0330|consen 183 LVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDN--- 259 (476)
T ss_pred EEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCC---
Confidence 69999999999997799999999999999999999999999999999999999999999999999999999888888
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
+..+.+...+.+.+++.|+|+.++..+
T Consensus 260 -----------------------------------------------------p~~v~~s~ky~tv~~lkQ~ylfv~~k~ 286 (476)
T KOG0330|consen 260 -----------------------------------------------------PVKVAVSSKYQTVDHLKQTYLFVPGKD 286 (476)
T ss_pred -----------------------------------------------------CeEEeccchhcchHHhhhheEeccccc
Confidence 666677889999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 161 KDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 161 K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
|..+|+++|+... ...+|||||||
T Consensus 287 K~~yLV~ll~e~~----g~s~iVF~~t~ 310 (476)
T KOG0330|consen 287 KDTYLVYLLNELA----GNSVIVFCNTC 310 (476)
T ss_pred cchhHHHHHHhhc----CCcEEEEEecc
Confidence 9999999999754 69999999998
No 2
>KOG0343|consensus
Probab=99.95 E-value=1.4e-28 Score=217.91 Aligned_cols=131 Identities=33% Similarity=0.531 Sum_probs=120.6
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
||||||||++|+..+..++.+++++||+||||+||++||...+..|+.++|+.+|++|||||.+..|..+++..+.+|.
T Consensus 194 LVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~- 272 (758)
T KOG0343|consen 194 LVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPV- 272 (758)
T ss_pred EEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCc-
Confidence 6999999999999988999999999999999999999999999999999999999999999999999999999999964
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
.+.+..+...++|++|.|+|+.|+-++
T Consensus 273 -----------------------------------------------------~vsvhe~a~~atP~~L~Q~y~~v~l~~ 299 (758)
T KOG0343|consen 273 -----------------------------------------------------YVSVHENAVAATPSNLQQSYVIVPLED 299 (758)
T ss_pred -----------------------------------------------------EEEEeccccccChhhhhheEEEEehhh
Confidence 222233456788999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 161 KDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 161 K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
|..+|..+++++. ..+.|||++||+
T Consensus 300 Ki~~L~sFI~shl----k~K~iVF~SscK 324 (758)
T KOG0343|consen 300 KIDMLWSFIKSHL----KKKSIVFLSSCK 324 (758)
T ss_pred HHHHHHHHHHhcc----ccceEEEEehhh
Confidence 9999999999876 899999999996
No 3
>KOG0328|consensus
Probab=99.95 E-value=7.3e-28 Score=199.63 Aligned_cols=128 Identities=30% Similarity=0.394 Sum_probs=117.2
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+.|||||+++|++. +++..+.++++|+||||.||+.||.+++..|.+++|+..|++++|||+|+++.++...||.+
T Consensus 149 VsGtPGrv~dmikr-~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtd--- 224 (400)
T KOG0328|consen 149 VSGTPGRVLDMIKR-RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTD--- 224 (400)
T ss_pred eeCCCchHHHHHHh-ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCC---
Confidence 57999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecC-c
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPY-D 159 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~-~ 159 (189)
+..+-+.+...+..+|+|+|+.++. +
T Consensus 225 -----------------------------------------------------pvrilvkrdeltlEgIKqf~v~ve~Ee 251 (400)
T KOG0328|consen 225 -----------------------------------------------------PVRILVKRDELTLEGIKQFFVAVEKEE 251 (400)
T ss_pred -----------------------------------------------------ceeEEEecCCCchhhhhhheeeechhh
Confidence 4444557777888999999999985 5
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 160 VKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 160 ~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
||.+.|.++...+. ..+++|||||++
T Consensus 252 wKfdtLcdLYd~Lt----ItQavIFcnTk~ 277 (400)
T KOG0328|consen 252 WKFDTLCDLYDTLT----ITQAVIFCNTKR 277 (400)
T ss_pred hhHhHHHHHhhhhe----hheEEEEecccc
Confidence 69999998887765 789999999985
No 4
>KOG0331|consensus
Probab=99.95 E-value=7.9e-28 Score=214.56 Aligned_cols=131 Identities=32% Similarity=0.485 Sum_probs=116.4
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhC-CCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAV-PKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l-~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
+|||||||.++++. +.++|++++|+|+||||+||++||+++++.|+..+ +..+|+++||||+|..|+.+|..++.+|
T Consensus 219 viaTPGRl~d~le~-g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~- 296 (519)
T KOG0331|consen 219 VIATPGRLIDLLEE-GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNP- 296 (519)
T ss_pred EEeCChHHHHHHHc-CCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCc-
Confidence 59999999999999 99999999999999999999999999999999999 5677999999999999999999999984
Q ss_pred eeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecC-c-cccchhhcceeEEEec
Q psy9740 80 TLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESK-Q-DVATVEELDQYYVLCP 157 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~l~q~~~~~~ 157 (189)
..+.+. . ......+|.|....|+
T Consensus 297 -------------------------------------------------------~~i~ig~~~~~~a~~~i~qive~~~ 321 (519)
T KOG0331|consen 297 -------------------------------------------------------IQINVGNKKELKANHNIRQIVEVCD 321 (519)
T ss_pred -------------------------------------------------------eEEEecchhhhhhhcchhhhhhhcC
Confidence 222222 2 4455788999999999
Q ss_pred CcchHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 158 YDVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 158 ~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
...|...|..+|..+. ..+.+++||||+|++
T Consensus 322 ~~~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr 352 (519)
T KOG0331|consen 322 ETAKLRKLGKLLEDIS-SDSEGKVIIFCETKR 352 (519)
T ss_pred HHHHHHHHHHHHHHHh-ccCCCcEEEEecchh
Confidence 9999999999999876 666789999999985
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.7e-27 Score=215.33 Aligned_cols=128 Identities=33% Similarity=0.495 Sum_probs=114.2
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
||||||||++|+.. +.++++.++++|+||||+||++||.+++..|++.+|.++|+++||||||+.+.++++.++++|
T Consensus 154 vVaTPGRllD~i~~-~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p-- 230 (513)
T COG0513 154 VVATPGRLLDLIKR-GKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDP-- 230 (513)
T ss_pred EEECccHHHHHHHc-CCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCC--
Confidence 69999999999998 799999999999999999999999999999999999999999999999999999999999984
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecC--ccccchhhcceeEEEecC
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESK--QDVATVEELDQYYVLCPY 158 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~q~~~~~~~ 158 (189)
..+.+. ........|.|+|+.++.
T Consensus 231 ------------------------------------------------------~~i~v~~~~~~~~~~~i~q~~~~v~~ 256 (513)
T COG0513 231 ------------------------------------------------------VEIEVSVEKLERTLKKIKQFYLEVES 256 (513)
T ss_pred ------------------------------------------------------cEEEEccccccccccCceEEEEEeCC
Confidence 233333 333378999999999998
Q ss_pred cc-hHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 159 DV-KDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 159 ~~-K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
.+ |...|..+++... ..++||||||++
T Consensus 257 ~~~k~~~L~~ll~~~~----~~~~IVF~~tk~ 284 (513)
T COG0513 257 EEEKLELLLKLLKDED----EGRVIVFVRTKR 284 (513)
T ss_pred HHHHHHHHHHHHhcCC----CCeEEEEeCcHH
Confidence 76 9999999998754 568999999974
No 6
>KOG0342|consensus
Probab=99.93 E-value=3e-26 Score=200.73 Aligned_cols=133 Identities=42% Similarity=0.579 Sum_probs=115.9
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+|||||||+||+.+.+.+-.++++++|+||||++|+.||+++|++|++.+|+.+|+++||||+|++|+++++..+..
T Consensus 209 liATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~--- 285 (543)
T KOG0342|consen 209 LIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKR--- 285 (543)
T ss_pred EEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcC---
Confidence 69999999999999888889999999999999999999999999999999999999999999999999999988876
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
+|..+.++ .+....+..++.|.|++++...
T Consensus 286 -------------------------------------------------d~~~v~~~-d~~~~~The~l~Qgyvv~~~~~ 315 (543)
T KOG0342|consen 286 -------------------------------------------------DPVFVNVD-DGGERETHERLEQGYVVAPSDS 315 (543)
T ss_pred -------------------------------------------------CceEeecC-CCCCcchhhcccceEEeccccc
Confidence 22222221 1345567899999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 161 KDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 161 K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
++..|+.+|+... ...++||||.||.
T Consensus 316 ~f~ll~~~LKk~~---~~~KiiVF~sT~~ 341 (543)
T KOG0342|consen 316 RFSLLYTFLKKNI---KRYKIIVFFSTCM 341 (543)
T ss_pred hHHHHHHHHHHhc---CCceEEEEechhh
Confidence 9999999999865 1289999999984
No 7
>KOG0345|consensus
Probab=99.92 E-value=1e-25 Score=196.77 Aligned_cols=129 Identities=35% Similarity=0.501 Sum_probs=115.4
Q ss_pred CeeehHhhHHHHhc-CCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDT-CNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~-~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
+|||||||.+++.. ...++++++.+||+||||+++++||+.+++.|++.+|+.+.+.|||||+.+++.++++..+++|
T Consensus 135 lVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNp- 213 (567)
T KOG0345|consen 135 LVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNP- 213 (567)
T ss_pred EEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCc-
Confidence 69999999999987 2446778999999999999999999999999999999999999999999999999999999994
Q ss_pred eeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccc--cchhhcceeEEEec
Q psy9740 80 TLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDV--ATVEELDQYYVLCP 157 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~q~~~~~~ 157 (189)
..+.++... .+|+++..+|+.|+
T Consensus 214 -------------------------------------------------------v~V~V~~k~~~~tPS~L~~~Y~v~~ 238 (567)
T KOG0345|consen 214 -------------------------------------------------------VRVSVKEKSKSATPSSLALEYLVCE 238 (567)
T ss_pred -------------------------------------------------------eeeeecccccccCchhhcceeeEec
Confidence 444444333 48999999999999
Q ss_pred CcchHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 158 YDVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 158 ~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
...|...|+++|.+.. ..++|||+.||.
T Consensus 239 a~eK~~~lv~~L~~~~----~kK~iVFF~TCa 266 (567)
T KOG0345|consen 239 ADEKLSQLVHLLNNNK----DKKCIVFFPTCA 266 (567)
T ss_pred HHHHHHHHHHHHhccc----cccEEEEecCcc
Confidence 9999999999998854 899999999984
No 8
>KOG0338|consensus
Probab=99.92 E-value=1e-25 Score=198.34 Aligned_cols=129 Identities=34% Similarity=0.513 Sum_probs=114.7
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
||||||||.||+.+..+++++++..+|+||||+||+.||.++|..|++.||+++|++||||||+++|.+|++..+.+|
T Consensus 306 VIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kP-- 383 (691)
T KOG0338|consen 306 VIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKP-- 383 (691)
T ss_pred EEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCC--
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEec---
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCP--- 157 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~--- 157 (189)
+.+-+++.....+.|.|.|+.+.
T Consensus 384 ------------------------------------------------------vrifvd~~~~~a~~LtQEFiRIR~~r 409 (691)
T KOG0338|consen 384 ------------------------------------------------------VRIFVDPNKDTAPKLTQEFIRIRPKR 409 (691)
T ss_pred ------------------------------------------------------eEEEeCCccccchhhhHHHheecccc
Confidence 44444666667789999999886
Q ss_pred CcchHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 158 YDVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 158 ~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
+.++...|..++.... ..++|||+.|++
T Consensus 410 e~dRea~l~~l~~rtf----~~~~ivFv~tKk 437 (691)
T KOG0338|consen 410 EGDREAMLASLITRTF----QDRTIVFVRTKK 437 (691)
T ss_pred ccccHHHHHHHHHHhc----ccceEEEEehHH
Confidence 3457778888887655 789999999874
No 9
>KOG0326|consensus
Probab=99.91 E-value=8.1e-25 Score=184.10 Aligned_cols=126 Identities=28% Similarity=0.383 Sum_probs=113.7
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+||||||++++.++ +...++++.++|+||||+||+..|.+.++.++..+|+++|+++||||+|-.|..+.+.+|++
T Consensus 207 ~vgTPGRIlDL~~K-gVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~k--- 282 (459)
T KOG0326|consen 207 VVGTPGRILDLAKK-GVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKK--- 282 (459)
T ss_pred EEcCChhHHHHHhc-ccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccC---
Confidence 58999999999998 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
|..++.- ...++.++.|||-++++..
T Consensus 283 -----------------------------------------------------Py~INLM-~eLtl~GvtQyYafV~e~q 308 (459)
T KOG0326|consen 283 -----------------------------------------------------PYEINLM-EELTLKGVTQYYAFVEERQ 308 (459)
T ss_pred -----------------------------------------------------cceeehh-hhhhhcchhhheeeechhh
Confidence 4343332 2345789999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 161 KDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 161 K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
|...|--++..+. -.+.||||||-
T Consensus 309 KvhCLntLfskLq----INQsIIFCNS~ 332 (459)
T KOG0326|consen 309 KVHCLNTLFSKLQ----INQSIIFCNST 332 (459)
T ss_pred hhhhHHHHHHHhc----ccceEEEeccc
Confidence 9999888887765 89999999985
No 10
>KOG0348|consensus
Probab=99.91 E-value=4.2e-25 Score=195.39 Aligned_cols=157 Identities=27% Similarity=0.380 Sum_probs=127.9
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCC-------------CCCcEEEEeecCCchH
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVP-------------KQKQTLLFSATMTDTL 67 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~-------------~~~Q~il~SATl~~~v 67 (189)
||||||||+||++++..+.++.++|||+||||+||+.||.++|..|++.+. ...|.+|+||||++.|
T Consensus 266 LIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V 345 (708)
T KOG0348|consen 266 LIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGV 345 (708)
T ss_pred EEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHH
Confidence 699999999999999999999999999999999999999999999998872 2479999999999999
Q ss_pred HHHHHhhccccceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchh
Q psy9740 68 EQVKSITKKQVGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVE 147 (189)
Q Consensus 68 ~~l~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (189)
.+|++.-++||..+..+.+..+.++...+.. +-+++ +.-..+ +....|+
T Consensus 346 ~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~-----------------------------ev~~~-~~~~~l-~~~~iPe 394 (708)
T KOG0348|consen 346 NRLADLSLKDPVYISLDKSHSQLNPKDKAVQ-----------------------------EVDDG-PAGDKL-DSFAIPE 394 (708)
T ss_pred HHHhhccccCceeeeccchhhhcCcchhhhh-----------------------------hcCCc-cccccc-ccccCcH
Confidence 9999999999988886666555542211110 00111 100011 3467799
Q ss_pred hcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 148 ELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 148 ~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
+|.|+|.+||..-.+..|..+|.+..+....+++|||++++
T Consensus 395 qL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~ 435 (708)
T KOG0348|consen 395 QLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCS 435 (708)
T ss_pred HhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEech
Confidence 99999999999999999999999888777788999999986
No 11
>KOG0333|consensus
Probab=99.91 E-value=1.9e-24 Score=190.90 Aligned_cols=128 Identities=30% Similarity=0.460 Sum_probs=119.0
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCC---C----------------------Cc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK---Q----------------------KQ 55 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~---~----------------------~Q 55 (189)
+|||||||.+.+.+ ..+-++.+.|||+||||+|+|+||.+++..|+.++|. . +|
T Consensus 376 viatPgrLid~Len-r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrq 454 (673)
T KOG0333|consen 376 VIATPGRLIDSLEN-RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQ 454 (673)
T ss_pred eecCchHHHHHHHH-HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeE
Confidence 68999999999998 8999999999999999999999999999999999973 1 69
Q ss_pred EEEEeecCCchHHHHHHhhccccceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCccee
Q psy9740 56 TLLFSATMTDTLEQVKSITKKQVGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVF 135 (189)
Q Consensus 56 ~il~SATl~~~v~~l~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (189)
+++||||||+.++.+++.||++ +.
T Consensus 455 T~mftatm~p~verlar~ylr~--------------------------------------------------------pv 478 (673)
T KOG0333|consen 455 TVMFTATMPPAVERLARSYLRR--------------------------------------------------------PV 478 (673)
T ss_pred EEEEecCCChHHHHHHHHHhhC--------------------------------------------------------Ce
Confidence 9999999999999999999999 77
Q ss_pred EeecCccccchhhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 136 VWESKQDVATVEELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 136 ~~~~~~~~~~~~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
+++++..+...+.+.|.++++++..|...|.++|++.. .+++|||+|+++
T Consensus 479 ~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~----~ppiIIFvN~kk 528 (673)
T KOG0333|consen 479 VVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNF----DPPIIIFVNTKK 528 (673)
T ss_pred EEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCC----CCCEEEEEechh
Confidence 78888888888999999999999999999999998854 899999999975
No 12
>KOG0327|consensus
Probab=99.89 E-value=1.8e-23 Score=178.84 Aligned_cols=126 Identities=35% Similarity=0.480 Sum_probs=116.0
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+||||||+.++++. +.+....++++|+||||.|++.||.++|+.|+..+|++.|++++|||+|.++.++.++++++
T Consensus 149 vvGTpgrV~dml~~-~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~--- 224 (397)
T KOG0327|consen 149 VVGTPGRVFDMLNR-GSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMRE--- 224 (397)
T ss_pred ecCCchhHHHhhcc-ccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccC---
Confidence 58999999999998 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
+..+.++....+..+++|+|+.+..+.
T Consensus 225 -----------------------------------------------------pv~i~vkk~~ltl~gikq~~i~v~k~~ 251 (397)
T KOG0327|consen 225 -----------------------------------------------------PVRILVKKDELTLEGIKQFYINVEKEE 251 (397)
T ss_pred -----------------------------------------------------ceEEEecchhhhhhheeeeeeeccccc
Confidence 455555666677899999999999989
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 161 KDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 161 K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
|+..|..+.+. ..+++|||||++
T Consensus 252 k~~~l~dl~~~------~~q~~if~nt~r 274 (397)
T KOG0327|consen 252 KLDTLCDLYRR------VTQAVIFCNTRR 274 (397)
T ss_pred cccHHHHHHHh------hhcceEEecchh
Confidence 99999999883 689999999975
No 13
>KOG0336|consensus
Probab=99.89 E-value=4.6e-23 Score=178.18 Aligned_cols=129 Identities=30% Similarity=0.406 Sum_probs=111.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+|||||||.++... +.++|+.+.||||||||+|||+||.++|.+|+--+.+++|++|.|||+|+.|++|+..|+++|
T Consensus 347 iiatPgrlndL~~~-n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep-- 423 (629)
T KOG0336|consen 347 IIATPGRLNDLQMD-NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEP-- 423 (629)
T ss_pred EeeCCchHhhhhhc-CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCc--
Confidence 58999999999998 999999999999999999999999999999999999999999999999999999999999995
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
..+......-.....+.|.+++-.+.+
T Consensus 424 -----------------------------------------------------~~v~vGsLdL~a~~sVkQ~i~v~~d~~ 450 (629)
T KOG0336|consen 424 -----------------------------------------------------MIVYVGSLDLVAVKSVKQNIIVTTDSE 450 (629)
T ss_pred -----------------------------------------------------eEEEecccceeeeeeeeeeEEecccHH
Confidence 333333333444678899998778888
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 161 KDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 161 K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
|....-.++++. .+..++||||.++
T Consensus 451 k~~~~~~f~~~m---s~ndKvIiFv~~K 475 (629)
T KOG0336|consen 451 KLEIVQFFVANM---SSNDKVIIFVSRK 475 (629)
T ss_pred HHHHHHHHHHhc---CCCceEEEEEech
Confidence 987777777664 4567999999876
No 14
>KOG0346|consensus
Probab=99.89 E-value=7e-23 Score=177.98 Aligned_cols=128 Identities=31% Similarity=0.463 Sum_probs=113.6
Q ss_pred CeeehHhhHHHHhcCCC-cccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDTCNT-FSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~-~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
||||||+++.|+.. +. ..+..++++|+||||-||..||.+++.+|...+|+.+|.+|+|||++++|..+.+.++++|
T Consensus 149 vV~TP~~ll~~~~~-~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nP- 226 (569)
T KOG0346|consen 149 VVATPAKLLRHLAA-GVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNP- 226 (569)
T ss_pred EEeChHHHHHHHhh-ccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCC-
Confidence 69999999999998 55 7899999999999999999999999999999999999999999999999999999999994
Q ss_pred eeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccc-cchhhcceeEEEecC
Q psy9740 80 TLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDV-ATVEELDQYYVLCPY 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~q~~~~~~~ 158 (189)
.+....+.. ..++++.||++.|.+
T Consensus 227 -------------------------------------------------------viLkl~e~el~~~dqL~Qy~v~cse 251 (569)
T KOG0346|consen 227 -------------------------------------------------------VILKLTEGELPNPDQLTQYQVKCSE 251 (569)
T ss_pred -------------------------------------------------------eEEEeccccCCCcccceEEEEEecc
Confidence 344444433 347999999999999
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 159 DVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 159 ~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
++|+..++.+|+.. --.+++|||+||-
T Consensus 252 ~DKflllyallKL~---LI~gKsliFVNtI 278 (569)
T KOG0346|consen 252 EDKFLLLYALLKLR---LIRGKSLIFVNTI 278 (569)
T ss_pred chhHHHHHHHHHHH---HhcCceEEEEech
Confidence 99999999999852 2369999999984
No 15
>KOG0335|consensus
Probab=99.88 E-value=1.1e-22 Score=179.56 Aligned_cols=133 Identities=31% Similarity=0.427 Sum_probs=113.9
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhc-cccHHHHHHHHhhCCC----CCcEEEEeecCCchHHHHHHhhc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS-GIFDEQMRTIFGAVPK----QKQTLLFSATMTDTLEQVKSITK 75 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~-~~f~~~i~~Il~~l~~----~~Q~il~SATl~~~v~~l~~~~l 75 (189)
+|||||||.++++. +.+.|.+++|+||||||+|+| +||.++|++|+..... .+|++|||||+|.++..++..++
T Consensus 206 lvaTpGrL~d~~e~-g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl 284 (482)
T KOG0335|consen 206 LVATPGRLKDLIER-GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFL 284 (482)
T ss_pred EEecCchhhhhhhc-ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHh
Confidence 58999999999999 999999999999999999999 9999999999988753 89999999999999999998888
Q ss_pred cccceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEE
Q psy9740 76 KQVGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVL 155 (189)
Q Consensus 76 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~ 155 (189)
.+ + -..+.+........++.|.+..
T Consensus 285 ~~----------------------------------------------------~---yi~laV~rvg~~~~ni~q~i~~ 309 (482)
T KOG0335|consen 285 KD----------------------------------------------------N---YIFLAVGRVGSTSENITQKILF 309 (482)
T ss_pred hc----------------------------------------------------c---ceEEEEeeeccccccceeEeee
Confidence 86 1 2233445666677999999999
Q ss_pred ecCcchHHHHHHHHHHHHh-----cCCCCeEEEEecCCC
Q psy9740 156 CPYDVKDGYLVETVRLYRE-----KSPRGAIVIFTDTCR 189 (189)
Q Consensus 156 ~~~~~K~~~L~~lL~~~~~-----~~~~~~~iIF~ns~~ 189 (189)
|.+.+|...|+++|..... ....+.++|||.|++
T Consensus 310 V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~ 348 (482)
T KOG0335|consen 310 VNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKR 348 (482)
T ss_pred ecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccc
Confidence 9999999999999986441 112248999999975
No 16
>KOG0339|consensus
Probab=99.87 E-value=3.7e-22 Score=176.02 Aligned_cols=128 Identities=34% Similarity=0.516 Sum_probs=108.1
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
||||||||++|++. +..+++++.||||||||+|++.||.++++.|..++.+++|+++||||++..++.+++.++-+|
T Consensus 350 vVaTPgRlid~Vkm-Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dp-- 426 (731)
T KOG0339|consen 350 VVATPGRLIDMVKM-KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDP-- 426 (731)
T ss_pred EEechHHHHHHHHh-hcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCC--
Confidence 69999999999999 999999999999999999999999999999999999999999999999999999999999984
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
+.+++ .........|.|.+.+|+.+.
T Consensus 427 -----------------------------------------------------VrvVq-g~vgean~dITQ~V~V~~s~~ 452 (731)
T KOG0339|consen 427 -----------------------------------------------------VRVVQ-GEVGEANEDITQTVSVCPSEE 452 (731)
T ss_pred -----------------------------------------------------eeEEE-eehhccccchhheeeeccCcH
Confidence 22222 344455688999999998654
Q ss_pred -hHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 161 -KDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 161 -K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
|+.+|..-|-.. ...+++|||+..+
T Consensus 453 ~Kl~wl~~~L~~f---~S~gkvlifVTKk 478 (731)
T KOG0339|consen 453 KKLNWLLRHLVEF---SSEGKVLIFVTKK 478 (731)
T ss_pred HHHHHHHHHhhhh---ccCCcEEEEEecc
Confidence 766665555433 3457999998643
No 17
>KOG0341|consensus
Probab=99.87 E-value=2.9e-23 Score=178.48 Aligned_cols=126 Identities=33% Similarity=0.456 Sum_probs=114.8
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+|+|||||.+++.+ +.++|.-++|+++||||+|+|.||.++|+.|+.++...+|+++||||||..++.+|+.-+-+
T Consensus 306 vVATPGRL~DmL~K-K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVK--- 381 (610)
T KOG0341|consen 306 VVATPGRLMDMLAK-KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVK--- 381 (610)
T ss_pred EEcCcchHHHHHHH-hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhccc---
Confidence 58999999999998 99999999999999999999999999999999999999999999999999999999999988
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
++.++++.-.+.+-++.|.+-++..+.
T Consensus 382 -----------------------------------------------------PvtvNVGRAGAAsldViQevEyVkqEa 408 (610)
T KOG0341|consen 382 -----------------------------------------------------PVTVNVGRAGAASLDVIQEVEYVKQEA 408 (610)
T ss_pred -----------------------------------------------------ceEEecccccccchhHHHHHHHHHhhh
Confidence 677788888877788888888888899
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 161 KDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 161 K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
|..+|.+-|.. ..++++|||-.+
T Consensus 409 KiVylLeCLQK-----T~PpVLIFaEkK 431 (610)
T KOG0341|consen 409 KIVYLLECLQK-----TSPPVLIFAEKK 431 (610)
T ss_pred hhhhHHHHhcc-----CCCceEEEeccc
Confidence 99888887764 368999999754
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.86 E-value=1.1e-21 Score=174.99 Aligned_cols=127 Identities=28% Similarity=0.420 Sum_probs=109.4
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+|||||||.+++.. +.+.+++++++|+||||.|++.||..++..+++.+|+.+|+++||||+|+.+..++..++.+|.
T Consensus 127 vV~Tp~rl~~~l~~-~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~- 204 (460)
T PRK11776 127 IVGTPGRILDHLRK-GTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPV- 204 (460)
T ss_pred EEEChHHHHHHHHc-CCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCE-
Confidence 58999999999988 8899999999999999999999999999999999999999999999999999999999998842
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
.+...... ..+.+.|+|+.++...
T Consensus 205 -------------------------------------------------------~i~~~~~~-~~~~i~~~~~~~~~~~ 228 (460)
T PRK11776 205 -------------------------------------------------------EVKVESTH-DLPAIEQRFYEVSPDE 228 (460)
T ss_pred -------------------------------------------------------EEEECcCC-CCCCeeEEEEEeCcHH
Confidence 22222222 2356889999999888
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 161 KDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 161 K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
|...|..++.... ..++||||||++
T Consensus 229 k~~~l~~ll~~~~----~~~~lVF~~t~~ 253 (460)
T PRK11776 229 RLPALQRLLLHHQ----PESCVVFCNTKK 253 (460)
T ss_pred HHHHHHHHHHhcC----CCceEEEECCHH
Confidence 9999999887643 678999999973
No 19
>KOG0329|consensus
Probab=99.86 E-value=1.5e-22 Score=166.32 Aligned_cols=127 Identities=27% Similarity=0.467 Sum_probs=114.1
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhcc-ccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSG-IFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~-~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
+||||||++-++.+ +.++|++++++|+||+|+||++ ..+.+++.|++..|..+|+++||||++.+++..++++|.+|.
T Consensus 165 vVgTPGrilALvr~-k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPm 243 (387)
T KOG0329|consen 165 VVGTPGRILALVRN-RSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPM 243 (387)
T ss_pred EEcCcHHHHHHHHh-ccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCch
Confidence 58999999999998 9999999999999999999976 699999999999999999999999999999999999999963
Q ss_pred eeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCc
Q psy9740 80 TLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYD 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~ 159 (189)
-+++ .+....+..++.|||+.+.+.
T Consensus 244 Ei~v-------------------------------------------------------DdE~KLtLHGLqQ~YvkLke~ 268 (387)
T KOG0329|consen 244 EIFV-------------------------------------------------------DDEAKLTLHGLQQYYVKLKEN 268 (387)
T ss_pred hhhc-------------------------------------------------------cchhhhhhhhHHHHHHhhhhh
Confidence 2222 234456689999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy9740 160 VKDGYLVETVRLYREKSPRGAIVIFTDT 187 (189)
Q Consensus 160 ~K~~~L~~lL~~~~~~~~~~~~iIF~ns 187 (189)
+|...|.++|..+. ..+++||+.|
T Consensus 269 eKNrkl~dLLd~Le----FNQVvIFvKs 292 (387)
T KOG0329|consen 269 EKNRKLNDLLDVLE----FNQVVIFVKS 292 (387)
T ss_pred hhhhhhhhhhhhhh----hcceeEeeeh
Confidence 99999999999887 8999999976
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.86 E-value=1.3e-21 Score=180.67 Aligned_cols=128 Identities=34% Similarity=0.417 Sum_probs=111.2
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
||||||||++++.. +.+++++++++|+||||.|++.+|.+++..|+..+|+.+|+++||||+|..+..+++.++.+|
T Consensus 129 VVgTPgrl~d~l~r-~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~-- 205 (629)
T PRK11634 129 VVGTPGRLLDHLKR-GTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEP-- 205 (629)
T ss_pred EEECHHHHHHHHHc-CCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCC--
Confidence 69999999999988 889999999999999999999999999999999999999999999999999999999999884
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
..+.+.......+.+.|.|+.+....
T Consensus 206 ------------------------------------------------------~~i~i~~~~~~~~~i~q~~~~v~~~~ 231 (629)
T PRK11634 206 ------------------------------------------------------QEVRIQSSVTTRPDISQSYWTVWGMR 231 (629)
T ss_pred ------------------------------------------------------eEEEccCccccCCceEEEEEEechhh
Confidence 22233333444567889999999889
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 161 KDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 161 K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
|...|..+|.... ..++||||||++
T Consensus 232 k~~~L~~~L~~~~----~~~~IVF~~tk~ 256 (629)
T PRK11634 232 KNEALVRFLEAED----FDAAIIFVRTKN 256 (629)
T ss_pred HHHHHHHHHHhcC----CCCEEEEeccHH
Confidence 9999988887543 679999999973
No 21
>PTZ00110 helicase; Provisional
Probab=99.86 E-value=2.3e-21 Score=176.67 Aligned_cols=131 Identities=30% Similarity=0.423 Sum_probs=109.8
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
||||||||.+++.. +..+++++++||+||||+|++.+|.+++..|+..+++.+|+++||||+|.+++.+++.++..
T Consensus 257 lVaTPgrL~d~l~~-~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~--- 332 (545)
T PTZ00110 257 LIACPGRLIDFLES-NVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKE--- 332 (545)
T ss_pred EEECHHHHHHHHHc-CCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhcc---
Confidence 68999999999988 88899999999999999999999999999999999999999999999999999999988864
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCcc-ccchhhcceeEEEecCc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQD-VATVEELDQYYVLCPYD 159 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~q~~~~~~~~ 159 (189)
+ +..+.+... .....++.|.+..+++.
T Consensus 333 -------------------------------------------------~---~v~i~vg~~~l~~~~~i~q~~~~~~~~ 360 (545)
T PTZ00110 333 -------------------------------------------------E---PVHVNVGSLDLTACHNIKQEVFVVEEH 360 (545)
T ss_pred -------------------------------------------------C---CEEEEECCCccccCCCeeEEEEEEech
Confidence 1 112222221 23346788999999988
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 160 VKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 160 ~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
.|...|.++|.... ....++||||||++
T Consensus 361 ~k~~~L~~ll~~~~--~~~~k~LIF~~t~~ 388 (545)
T PTZ00110 361 EKRGKLKMLLQRIM--RDGDKILIFVETKK 388 (545)
T ss_pred hHHHHHHHHHHHhc--ccCCeEEEEecChH
Confidence 89999999988754 25689999999974
No 22
>KOG4284|consensus
Probab=99.85 E-value=1.3e-21 Score=176.46 Aligned_cols=126 Identities=25% Similarity=0.393 Sum_probs=109.7
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhc-cccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS-GIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~-~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
+||||||+.++++. +.+++++++++||||||+|++ ..|+++|..|+..+|+.+|++.||||+|..+.++..++|++|
T Consensus 147 vIGtPGRi~qL~el-~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp- 224 (980)
T KOG4284|consen 147 VIGTPGRIAQLVEL-GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDP- 224 (980)
T ss_pred EecCchHHHHHHHh-cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhccc-
Confidence 59999999999998 999999999999999999998 569999999999999999999999999999999999999994
Q ss_pred eeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCc
Q psy9740 80 TLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYD 159 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~ 159 (189)
..+..+.....+=+|+|||+.++.-
T Consensus 225 -------------------------------------------------------~lVr~n~~d~~L~GikQyv~~~~s~ 249 (980)
T KOG4284|consen 225 -------------------------------------------------------ALVRFNADDVQLFGIKQYVVAKCSP 249 (980)
T ss_pred -------------------------------------------------------ceeecccCCceeechhheeeeccCC
Confidence 4444455555667899999887642
Q ss_pred --------chHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy9740 160 --------VKDGYLVETVRLYREKSPRGAIVIFTDT 187 (189)
Q Consensus 160 --------~K~~~L~~lL~~~~~~~~~~~~iIF~ns 187 (189)
.|++.|-++++.+. ..++||||++
T Consensus 250 nnsveemrlklq~L~~vf~~ip----y~QAlVF~~~ 281 (980)
T KOG4284|consen 250 NNSVEEMRLKLQKLTHVFKSIP----YVQALVFCDQ 281 (980)
T ss_pred cchHHHHHHHHHHHHHHHhhCc----hHHHHhhhhh
Confidence 37777777777654 8999999986
No 23
>KOG0340|consensus
Probab=99.85 E-value=1.9e-21 Score=165.45 Aligned_cols=134 Identities=49% Similarity=0.727 Sum_probs=116.7
Q ss_pred CeeehHhhHHHHhcC---CCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 1 VIATPGRLADHLDTC---NTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 1 lV~TPgrl~~ll~~~---~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
||+||||+.+++..+ -...+.+++|+|+||||+|++..|.++++.|++.+|+.+|+++||||+++.+.++...-...
T Consensus 129 VvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k 208 (442)
T KOG0340|consen 129 VVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITK 208 (442)
T ss_pred EecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCccc
Confidence 689999999999885 23468999999999999999999999999999999999999999999999998886555544
Q ss_pred cceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEec
Q psy9740 78 VGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCP 157 (189)
Q Consensus 78 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~ 157 (189)
+ ...++...+...+++.|.|.|+.|+
T Consensus 209 ~------------------------------------------------------~a~~~e~~~~vstvetL~q~yI~~~ 234 (442)
T KOG0340|consen 209 S------------------------------------------------------IAFELEVIDGVSTVETLYQGYILVS 234 (442)
T ss_pred c------------------------------------------------------cceEEeccCCCCchhhhhhheeecc
Confidence 1 1555566677778999999999999
Q ss_pred CcchHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 158 YDVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 158 ~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
...|..||+++|+.+..+ ..+.+|||+||++
T Consensus 235 ~~vkdaYLv~~Lr~~~~~-~~~simIFvnttr 265 (442)
T KOG0340|consen 235 IDVKDAYLVHLLRDFENK-ENGSIMIFVNTTR 265 (442)
T ss_pred hhhhHHHHHHHHhhhhhc-cCceEEEEeehhH
Confidence 999999999999998754 6789999999974
No 24
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.84 E-value=1.3e-20 Score=170.80 Aligned_cols=129 Identities=28% Similarity=0.403 Sum_probs=109.7
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
||||||||.+++.. +.+.++++++||+||||.|++.||.+++..|+..++ .+|+++||||++.+++.+++.++.+
T Consensus 250 iV~TPgrL~~~l~~-~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~--- 324 (518)
T PLN00206 250 IVGTPGRLIDLLSK-HDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKD--- 324 (518)
T ss_pred EEECHHHHHHHHHc-CCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCC---
Confidence 68999999999988 789999999999999999999999999999999885 6899999999999999999999887
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
+..+...........+.|.++.++...
T Consensus 325 -----------------------------------------------------~~~i~~~~~~~~~~~v~q~~~~~~~~~ 351 (518)
T PLN00206 325 -----------------------------------------------------IILISIGNPNRPNKAVKQLAIWVETKQ 351 (518)
T ss_pred -----------------------------------------------------CEEEEeCCCCCCCcceeEEEEeccchh
Confidence 334444444445567889999999888
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 161 KDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 161 K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
|...|.++|+... ...+++||||||+.
T Consensus 352 k~~~l~~~l~~~~--~~~~~~iVFv~s~~ 378 (518)
T PLN00206 352 KKQKLFDILKSKQ--HFKPPAVVFVSSRL 378 (518)
T ss_pred HHHHHHHHHHhhc--ccCCCEEEEcCCch
Confidence 8888999887643 23468999999973
No 25
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.84 E-value=1e-20 Score=168.94 Aligned_cols=128 Identities=29% Similarity=0.431 Sum_probs=108.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
||||||||++++.. +.+.++++++||+||||.|++.+|..++..++..++..+|+++||||++.++..++..++.+|
T Consensus 129 iV~TP~rL~~~~~~-~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~-- 205 (456)
T PRK10590 129 LVATPGRLLDLEHQ-NAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNP-- 205 (456)
T ss_pred EEEChHHHHHHHHc-CCcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCC--
Confidence 69999999999987 888999999999999999999999999999999999999999999999999999999998883
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
..+.+.........+.|++..++...
T Consensus 206 ------------------------------------------------------~~i~~~~~~~~~~~i~~~~~~~~~~~ 231 (456)
T PRK10590 206 ------------------------------------------------------LEIEVARRNTASEQVTQHVHFVDKKR 231 (456)
T ss_pred ------------------------------------------------------eEEEEecccccccceeEEEEEcCHHH
Confidence 22222333344567888998888888
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 161 KDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 161 K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
|...|..++.. ....++||||||++
T Consensus 232 k~~~l~~l~~~----~~~~~~lVF~~t~~ 256 (456)
T PRK10590 232 KRELLSQMIGK----GNWQQVLVFTRTKH 256 (456)
T ss_pred HHHHHHHHHHc----CCCCcEEEEcCcHH
Confidence 87777777654 34689999999963
No 26
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.84 E-value=1.6e-20 Score=165.96 Aligned_cols=128 Identities=26% Similarity=0.322 Sum_probs=107.2
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCC--CCcEEEEeecCCchHHHHHHhhcccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK--QKQTLLFSATMTDTLEQVKSITKKQV 78 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~--~~Q~il~SATl~~~v~~l~~~~l~~p 78 (189)
||||||||++++.. +.+++++++++|+||||.|++.||..++..|+..+|. .+|.++||||++..+.+++..++.+|
T Consensus 137 lV~TP~~l~~~l~~-~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p 215 (423)
T PRK04837 137 LIGTTGRLIDYAKQ-NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNP 215 (423)
T ss_pred EEECHHHHHHHHHc-CCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCC
Confidence 69999999999987 8899999999999999999999999999999999984 67889999999999999998888874
Q ss_pred ceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecC
Q psy9740 79 GTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPY 158 (189)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~ 158 (189)
. .+.+.........+.+.++++..
T Consensus 216 ~--------------------------------------------------------~i~v~~~~~~~~~i~~~~~~~~~ 239 (423)
T PRK04837 216 E--------------------------------------------------------YVEVEPEQKTGHRIKEELFYPSN 239 (423)
T ss_pred E--------------------------------------------------------EEEEcCCCcCCCceeEEEEeCCH
Confidence 2 22233333345667888888887
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 159 DVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 159 ~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
..|...|.++++.. ...++||||||++
T Consensus 240 ~~k~~~l~~ll~~~----~~~~~lVF~~t~~ 266 (423)
T PRK04837 240 EEKMRLLQTLIEEE----WPDRAIIFANTKH 266 (423)
T ss_pred HHHHHHHHHHHHhc----CCCeEEEEECCHH
Confidence 88988888888653 3689999999863
No 27
>KOG0337|consensus
Probab=99.83 E-value=7.1e-21 Score=164.79 Aligned_cols=129 Identities=28% Similarity=0.361 Sum_probs=113.9
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
|||||||++++.-. ..+.|+.+.|||+||||+|+++||++++..|+..+|.++|+++||||+|..+-+.++..+.+|
T Consensus 144 i~ATpgr~~h~~ve-m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p-- 220 (529)
T KOG0337|consen 144 IIATPGRLLHLGVE-MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPP-- 220 (529)
T ss_pred EEecCceeeeeehh-eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCC--
Confidence 57899999987766 778999999999999999999999999999999999999999999999999999999999884
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
..+.++-...+.+.+...|+.+...+
T Consensus 221 ------------------------------------------------------~lVRldvetkise~lk~~f~~~~~a~ 246 (529)
T KOG0337|consen 221 ------------------------------------------------------VLVRLDVETKISELLKVRFFRVRKAE 246 (529)
T ss_pred ------------------------------------------------------ceEEeehhhhcchhhhhheeeeccHH
Confidence 33334555667788999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 161 KDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 161 K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
|..+|..++.... ...+++|||.|++
T Consensus 247 K~aaLl~il~~~~---~~~~t~vf~~tk~ 272 (529)
T KOG0337|consen 247 KEAALLSILGGRI---KDKQTIVFVATKH 272 (529)
T ss_pred HHHHHHHHHhccc---cccceeEEecccc
Confidence 9999999998754 2468999999975
No 28
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.82 E-value=3e-20 Score=170.24 Aligned_cols=129 Identities=26% Similarity=0.354 Sum_probs=106.7
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCC--CCcEEEEeecCCchHHHHHHhhcccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK--QKQTLLFSATMTDTLEQVKSITKKQV 78 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~--~~Q~il~SATl~~~v~~l~~~~l~~p 78 (189)
||||||||++++...+.+.++.+++|||||||.|++.+|..++..|+..++. .+|+++||||++..+.+++..++.+|
T Consensus 138 iV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p 217 (572)
T PRK04537 138 IIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEP 217 (572)
T ss_pred EEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCC
Confidence 6999999999998744678999999999999999999999999999999996 78999999999999999999998874
Q ss_pred ceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecC
Q psy9740 79 GTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPY 158 (189)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~ 158 (189)
. .+...........+.|+++.+..
T Consensus 218 ~--------------------------------------------------------~i~v~~~~~~~~~i~q~~~~~~~ 241 (572)
T PRK04537 218 E--------------------------------------------------------KLVVETETITAARVRQRIYFPAD 241 (572)
T ss_pred c--------------------------------------------------------EEEeccccccccceeEEEEecCH
Confidence 2 11112222345678888888888
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 159 DVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 159 ~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
..|...|..+++.. ...++||||||++
T Consensus 242 ~~k~~~L~~ll~~~----~~~k~LVF~nt~~ 268 (572)
T PRK04537 242 EEKQTLLLGLLSRS----EGARTMVFVNTKA 268 (572)
T ss_pred HHHHHHHHHHHhcc----cCCcEEEEeCCHH
Confidence 88888888887653 3679999999963
No 29
>KOG0347|consensus
Probab=99.81 E-value=9.8e-21 Score=168.29 Aligned_cols=149 Identities=31% Similarity=0.438 Sum_probs=110.1
Q ss_pred CeeehHhhHHHHhcCCC--cccCceeeEEeccchhhhccccHHHHHHHHhhCC-----CCCcEEEEeecCCchHHHHHHh
Q psy9740 1 VIATPGRLADHLDTCNT--FSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVP-----KQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~--~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~-----~~~Q~il~SATl~~~v~~l~~~ 73 (189)
||||||||+.++...+. -+++++++||+||||+|++.|+++.+..|++.+. ..+|++.||||++-....-.+.
T Consensus 317 VVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~ 396 (731)
T KOG0347|consen 317 VVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSS 396 (731)
T ss_pred EEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHH
Confidence 69999999999988322 2789999999999999999999999999998886 3689999999997654433333
Q ss_pred hccccceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCC-cceeEeecCccccchhhccee
Q psy9740 74 TKKQVGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDP-VHVFVWESKQDVATVEELDQY 152 (189)
Q Consensus 74 ~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~q~ 152 (189)
..+.. +..+...+ -++.++...+. +.+.++..+....+.+.|.+.
T Consensus 397 ~~k~~-------~k~~~~~~---------------------------kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es 442 (731)
T KOG0347|consen 397 SRKKK-------DKEDELNA---------------------------KIQHLMKKIGFRGKPKIIDLTPQSATASTLTES 442 (731)
T ss_pred hhhcc-------chhhhhhH---------------------------HHHHHHHHhCccCCCeeEecCcchhHHHHHHHH
Confidence 33220 00001111 12223321111 113677788888999999999
Q ss_pred EEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 153 YVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 153 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
.+.|+..+|..+|+++|-.+ .+++||||||.
T Consensus 443 ~I~C~~~eKD~ylyYfl~ry-----PGrTlVF~NsI 473 (731)
T KOG0347|consen 443 LIECPPLEKDLYLYYFLTRY-----PGRTLVFCNSI 473 (731)
T ss_pred hhcCCccccceeEEEEEeec-----CCceEEEechH
Confidence 99999999999999999765 69999999983
No 30
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.80 E-value=2.7e-19 Score=158.40 Aligned_cols=128 Identities=27% Similarity=0.393 Sum_probs=105.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCc-hHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTD-TLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~-~v~~l~~~~l~~p~ 79 (189)
||||||||++++.. +.+.++++++||+||||.|++.+|...+..|...++..+|+++||||++. .+..+++.++.+|
T Consensus 127 lV~Tp~rl~~~~~~-~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~- 204 (434)
T PRK11192 127 VVATPGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDP- 204 (434)
T ss_pred EEEChHHHHHHHHc-CCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCC-
Confidence 68999999999988 88999999999999999999999999999999999999999999999986 4788888888773
Q ss_pred eeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecC-
Q psy9740 80 TLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPY- 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~- 158 (189)
..+...........+.|+++.++.
T Consensus 205 -------------------------------------------------------~~i~~~~~~~~~~~i~~~~~~~~~~ 229 (434)
T PRK11192 205 -------------------------------------------------------VEVEAEPSRRERKKIHQWYYRADDL 229 (434)
T ss_pred -------------------------------------------------------EEEEecCCcccccCceEEEEEeCCH
Confidence 222333333445678888888875
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 159 DVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 159 ~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
..|...|..+++. ....++||||||++
T Consensus 230 ~~k~~~l~~l~~~----~~~~~~lVF~~s~~ 256 (434)
T PRK11192 230 EHKTALLCHLLKQ----PEVTRSIVFVRTRE 256 (434)
T ss_pred HHHHHHHHHHHhc----CCCCeEEEEeCChH
Confidence 5687777777764 23689999999973
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.79 E-value=6.6e-19 Score=157.89 Aligned_cols=128 Identities=30% Similarity=0.411 Sum_probs=106.9
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCC--CCcEEEEeecCCchHHHHHHhhcccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK--QKQTLLFSATMTDTLEQVKSITKKQV 78 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~--~~Q~il~SATl~~~v~~l~~~~l~~p 78 (189)
||+||++|++++.. +...+++++++|+||||.+++.+|.+.+.+|+..++. .+|++++|||++.++.++++.++.+|
T Consensus 217 iv~TP~~Ll~~~~~-~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~ 295 (475)
T PRK01297 217 LVATPGRLLDFNQR-GEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDP 295 (475)
T ss_pred EEECHHHHHHHHHc-CCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCC
Confidence 68999999999887 7889999999999999999999999999999999974 68999999999999999999998874
Q ss_pred ceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecC
Q psy9740 79 GTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPY 158 (189)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~ 158 (189)
..+.+........++.|+++.+..
T Consensus 296 --------------------------------------------------------~~v~~~~~~~~~~~~~~~~~~~~~ 319 (475)
T PRK01297 296 --------------------------------------------------------AIVEIEPENVASDTVEQHVYAVAG 319 (475)
T ss_pred --------------------------------------------------------EEEEeccCcCCCCcccEEEEEecc
Confidence 222233333344667788888888
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 159 DVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 159 ~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
.+|...|..++.. ....++||||||++
T Consensus 320 ~~k~~~l~~ll~~----~~~~~~IVF~~s~~ 346 (475)
T PRK01297 320 SDKYKLLYNLVTQ----NPWERVMVFANRKD 346 (475)
T ss_pred hhHHHHHHHHHHh----cCCCeEEEEeCCHH
Confidence 8898888888765 33679999999863
No 32
>KOG0332|consensus
Probab=99.78 E-value=1.8e-19 Score=154.28 Aligned_cols=129 Identities=33% Similarity=0.459 Sum_probs=113.0
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhcc-ccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSG-IFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~-~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
+|||||-+.|++...+-+.++.++.+|+||||.|++. ||+++--+|...+|++.|.++||||+.+.|..++....++
T Consensus 211 viGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn-- 288 (477)
T KOG0332|consen 211 VIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPN-- 288 (477)
T ss_pred eeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCC--
Confidence 5899999999998767788999999999999999964 8999999999999999999999999999999999999999
Q ss_pred eeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecC-
Q psy9740 80 TLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPY- 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~- 158 (189)
+.++.+.......++|.|+|+.|+.
T Consensus 289 ------------------------------------------------------~n~i~Lk~eel~L~~IkQlyv~C~~~ 314 (477)
T KOG0332|consen 289 ------------------------------------------------------ANVIILKREELALDNIKQLYVLCACR 314 (477)
T ss_pred ------------------------------------------------------Cceeeeehhhccccchhhheeeccch
Confidence 4444556777788999999999986
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 159 DVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 159 ~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
.+|...|..+.-.. ..+++||||.||+
T Consensus 315 ~~K~~~l~~lyg~~----tigqsiIFc~tk~ 341 (477)
T KOG0332|consen 315 DDKYQALVNLYGLL----TIGQSIIFCHTKA 341 (477)
T ss_pred hhHHHHHHHHHhhh----hhhheEEEEeehh
Confidence 56988887755443 3799999999974
No 33
>KOG0350|consensus
Probab=99.78 E-value=3.4e-19 Score=157.00 Aligned_cols=132 Identities=27% Similarity=0.402 Sum_probs=105.5
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCC----------------------------
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK---------------------------- 52 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~---------------------------- 52 (189)
||+|||||.+|+.+.++++|++++|+|+||||+|++..|++|+..++..+..
T Consensus 274 lVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~ 353 (620)
T KOG0350|consen 274 LVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTK 353 (620)
T ss_pred EEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhh
Confidence 6999999999999879999999999999999999999999999988866632
Q ss_pred ------CCcEEEEeecCCchHHHHHHhhccccceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHH
Q psy9740 53 ------QKQTLLFSATMTDTLEQVKSITKKQVGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQII 126 (189)
Q Consensus 53 ------~~Q~il~SATl~~~v~~l~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (189)
..+.++||||++..-..+...-++.|..+.+..+
T Consensus 354 ~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~---------------------------------------- 393 (620)
T KOG0350|consen 354 LGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP---------------------------------------- 393 (620)
T ss_pred cCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc----------------------------------------
Confidence 1245566666666666666666665432222211
Q ss_pred hhcCCcceeEeecCccccchhhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 127 TQLDPVHVFVWESKQDVATVEELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
....+.+++.+.|+++.++...|..+++.+++... ..++|+|+||-
T Consensus 394 ------------~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k----~~r~lcf~~S~ 439 (620)
T KOG0350|consen 394 ------------LIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNK----LNRTLCFVNSV 439 (620)
T ss_pred ------------cceeeecChhhhhceeecccccchHhHHHHHHHhh----cceEEEEecch
Confidence 24678889999999999999999999999999866 89999999973
No 34
>KOG0334|consensus
Probab=99.76 E-value=6.9e-19 Score=165.26 Aligned_cols=129 Identities=30% Similarity=0.404 Sum_probs=112.0
Q ss_pred CeeehHhhHHHHhcC--CCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhcccc
Q psy9740 1 VIATPGRLADHLDTC--NTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQV 78 (189)
Q Consensus 1 lV~TPgrl~~ll~~~--~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p 78 (189)
+||||||..+++-.+ +..+++++.|||+||||+|+++||.+++..|++.++..+|+++||||+|..++.+++..++.|
T Consensus 492 vV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~P 571 (997)
T KOG0334|consen 492 VVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKP 571 (997)
T ss_pred EEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCC
Confidence 599999999998772 233677777999999999999999999999999999999999999999999999999999974
Q ss_pred ceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEec-
Q psy9740 79 GTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCP- 157 (189)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~- 157 (189)
..+.+.....+...+.|.+.+|+
T Consensus 572 --------------------------------------------------------veiiv~~~svV~k~V~q~v~V~~~ 595 (997)
T KOG0334|consen 572 --------------------------------------------------------VEIIVGGRSVVCKEVTQVVRVCAI 595 (997)
T ss_pred --------------------------------------------------------eeEEEccceeEeccceEEEEEecC
Confidence 33445666677899999999999
Q ss_pred CcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 158 YDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 158 ~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
+.+|...|.++|...+ ...++||||.++
T Consensus 596 e~eKf~kL~eLl~e~~---e~~~tiiFv~~q 623 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERY---EDGKTIIFVDKQ 623 (997)
T ss_pred chHHHHHHHHHHHHHh---hcCCEEEEEcCc
Confidence 7889999999998765 278999999875
No 35
>PTZ00424 helicase 45; Provisional
Probab=99.73 E-value=2.6e-17 Score=143.78 Aligned_cols=128 Identities=30% Similarity=0.444 Sum_probs=103.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+||||+++.+++.. +.+.+++++++|+||||.+++.+|...+..++..++++.|++++|||+|.++.++...++.+|.
T Consensus 150 vv~Tp~~l~~~l~~-~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~- 227 (401)
T PTZ00424 150 VVGTPGRVYDMIDK-RHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPK- 227 (401)
T ss_pred EEECcHHHHHHHHh-CCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCE-
Confidence 58999999999987 7888999999999999999999999999999999999999999999999999999888887742
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecC-c
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPY-D 159 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~-~ 159 (189)
.+..........++.++++.++. .
T Consensus 228 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (401)
T PTZ00424 228 -------------------------------------------------------RILVKKDELTLEGIRQFYVAVEKEE 252 (401)
T ss_pred -------------------------------------------------------EEEeCCCCcccCCceEEEEecChHH
Confidence 11122223345667888887765 4
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 160 VKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 160 ~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
.+...+..+++. ....++||||||++
T Consensus 253 ~~~~~l~~~~~~----~~~~~~ivF~~t~~ 278 (401)
T PTZ00424 253 WKFDTLCDLYET----LTITQAIIYCNTRR 278 (401)
T ss_pred HHHHHHHHHHHh----cCCCeEEEEecCcH
Confidence 466666666554 33678999999974
No 36
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.61 E-value=3.3e-15 Score=140.75 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=59.5
Q ss_pred CeeehHhhHHHHhcCCCcc----------------cCceeeEEeccchhhhccccHHHHHHHHhhC--CCC---CcEEEE
Q psy9740 1 VIATPGRLADHLDTCNTFS----------------LNRIKFLVLDEADRLLSGIFDEQMRTIFGAV--PKQ---KQTLLF 59 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~----------------l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l--~~~---~Q~il~ 59 (189)
|||| .||+.+ +.++ +++++++|||||| |+.+|.+++..|++.+ ++. +|+++|
T Consensus 139 IVgT----~D~i~s-r~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLF 211 (844)
T TIGR02621 139 IVGT----VDMIGS-RLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVEL 211 (844)
T ss_pred EEEC----HHHHcC-CccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEE
Confidence 6899 477766 5552 7999999999999 8899999999999975 442 799999
Q ss_pred eecCCchHHHHHHhhccc
Q psy9740 60 SATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 60 SATl~~~v~~l~~~~l~~ 77 (189)
|||+|.++.++++.++.+
T Consensus 212 SAT~p~ei~~l~~~~~~~ 229 (844)
T TIGR02621 212 TATSRTDGPDRTTLLSAE 229 (844)
T ss_pred ecCCCccHHHHHHHHccC
Confidence 999999999988888766
No 37
>PRK09401 reverse gyrase; Reviewed
Probab=99.59 E-value=4.9e-15 Score=144.72 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=89.9
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhc-----------cccH-HHHHHHHhhCCC----------------
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS-----------GIFD-EQMRTIFGAVPK---------------- 52 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~-----------~~f~-~~i~~Il~~l~~---------------- 52 (189)
+|||||||.+++. .+....++++|+||||.|++ .||. ++|..+++.++.
T Consensus 183 lV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~ 259 (1176)
T PRK09401 183 LVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEE 259 (1176)
T ss_pred EEECHHHHHHHHH---hccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHH
Confidence 5999999999886 36677899999999999996 6885 789999988875
Q ss_pred --------CCcEEEEeecCCch-HHHHHHhhccccceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHH
Q psy9740 53 --------QKQTLLFSATMTDT-LEQVKSITKKQVGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVA 123 (189)
Q Consensus 53 --------~~Q~il~SATl~~~-v~~l~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (189)
.+|+++||||+++. +.. .++++
T Consensus 260 ~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~---------------------------------------------- 290 (1176)
T PRK09401 260 KIAELKDKKGVLVVSSATGRPRGNRV---KLFRE---------------------------------------------- 290 (1176)
T ss_pred hhhhcccCCceEEEEeCCCCccchHH---HHhhc----------------------------------------------
Confidence 68999999999875 432 22233
Q ss_pred HHHhhcCCcceeEeecCccccchhhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 124 QIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
+.-+.++.......+|.|.|+.++ +|...|.++++.. ..++||||||++
T Consensus 291 ----------ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l-----~~~~LIFv~t~~ 339 (1176)
T PRK09401 291 ----------LLGFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRL-----GDGGLIFVPSDK 339 (1176)
T ss_pred ----------cceEEecCcccccCCceEEEEEcc--cHHHHHHHHHHhc-----CCCEEEEEeccc
Confidence 111222333345678999998776 6777888888654 358999999964
No 38
>KOG0344|consensus
Probab=99.50 E-value=3.2e-14 Score=127.58 Aligned_cols=127 Identities=28% Similarity=0.345 Sum_probs=110.1
Q ss_pred CeeehHhhHHHHhcCCC--cccCceeeEEeccchhhhcc-ccHHHHHHHHhhCC-CCCcEEEEeecCCchHHHHHHhhcc
Q psy9740 1 VIATPGRLADHLDTCNT--FSLNRIKFLVLDEADRLLSG-IFDEQMRTIFGAVP-KQKQTLLFSATMTDTLEQVKSITKK 76 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~--~~l~~l~~lVlDEaD~ll~~-~f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~~l~~~~l~ 76 (189)
+|+||-|++.++.. +. +.+++|.++|+||||.+++. +|.+++..|+..+. ++.-+-+||||++..|++.++..+.
T Consensus 266 li~TP~ri~~~~~~-~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~ 344 (593)
T KOG0344|consen 266 LISTPMRIVGLLGL-GKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKS 344 (593)
T ss_pred HhcCHHHHHHHhcC-CCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhc
Confidence 58999999999987 54 78999999999999999999 99999999999987 4566789999999999999999998
Q ss_pred ccceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEe
Q psy9740 77 QVGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLC 156 (189)
Q Consensus 77 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~ 156 (189)
+ +..+.++........|.|..+.|
T Consensus 345 ~--------------------------------------------------------~~~vivg~~~sa~~~V~QelvF~ 368 (593)
T KOG0344|consen 345 D--------------------------------------------------------LKRVIVGLRNSANETVDQELVFC 368 (593)
T ss_pred c--------------------------------------------------------ceeEEEecchhHhhhhhhhheee
Confidence 8 55555566666788999999999
Q ss_pred cCc-chHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 157 PYD-VKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 157 ~~~-~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
+.+ .|..++.+++.... .++++||+.|.
T Consensus 369 gse~~K~lA~rq~v~~g~----~PP~lIfVQs~ 397 (593)
T KOG0344|consen 369 GSEKGKLLALRQLVASGF----KPPVLIFVQSK 397 (593)
T ss_pred ecchhHHHHHHHHHhccC----CCCeEEEEecH
Confidence 864 49999999998764 88999999874
No 39
>KOG0349|consensus
Probab=99.46 E-value=7.9e-14 Score=122.05 Aligned_cols=86 Identities=29% Similarity=0.426 Sum_probs=77.0
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCC------CCcEEEEeecCCc-hHHHHHHh
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK------QKQTLLFSATMTD-TLEQVKSI 73 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~------~~Q~il~SATl~~-~v~~l~~~ 73 (189)
+||||||+.+++.. +.+.+..++|+|+||||.+|..||.+.|.+..+.+|+ +.|.+++|||+.. +|..+...
T Consensus 343 vvGtpgRl~~~is~-g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~er 421 (725)
T KOG0349|consen 343 VVGTPGRLLQPISK-GLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGER 421 (725)
T ss_pred eecCchhhhhhhhc-cceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhh
Confidence 58999999999998 9999999999999999999999999999999999984 5799999999965 79999999
Q ss_pred hccccceeeeeccc
Q psy9740 74 TKKQVGTLLFSATM 87 (189)
Q Consensus 74 ~l~~p~~~~~~~~~ 87 (189)
.|+-|-+.-...+.
T Consensus 422 vmhfptwVdLkgeD 435 (725)
T KOG0349|consen 422 VMHFPTWVDLKGED 435 (725)
T ss_pred hccCceeEeccccc
Confidence 99997666555544
No 40
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.41 E-value=7.8e-13 Score=129.46 Aligned_cols=118 Identities=20% Similarity=0.274 Sum_probs=81.4
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhc-----------cccHHH-HHHHHh--------------------
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS-----------GIFDEQ-MRTIFG-------------------- 48 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~-----------~~f~~~-i~~Il~-------------------- 48 (189)
||||||||.+++.. +.. +++++|+||||.|++ .||.++ ++.|++
T Consensus 182 lV~Tp~rL~~~~~~---l~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~ 257 (1171)
T TIGR01054 182 LITTTMFLSKNYDE---LGP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLEL 257 (1171)
T ss_pred EEECHHHHHHHHHH---hcC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHH
Confidence 69999999998865 222 899999999999998 688875 666543
Q ss_pred --hCCCCCc--EEEEeec-CCchHHHHHHhhccccceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHH
Q psy9740 49 --AVPKQKQ--TLLFSAT-MTDTLEQVKSITKKQVGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVA 123 (189)
Q Consensus 49 --~l~~~~Q--~il~SAT-l~~~v~~l~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (189)
.+|+.+| +++|||| +|..+.. .++++
T Consensus 258 ~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~---------------------------------------------- 288 (1171)
T TIGR01054 258 LEAIPGKKRGCLIVSSATGRPRGKRA---KLFRE---------------------------------------------- 288 (1171)
T ss_pred HHhhhhccCcEEEEEeCCCCccccHH---HHccc----------------------------------------------
Confidence 4566666 5679999 5665542 23333
Q ss_pred HHHhhcCCcceeEeecCccccchhhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 124 QIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
..-+.+........+|.|.|+.++. +...|.++++.. ..++||||||+
T Consensus 289 ----------ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-----~~~~IVFv~t~ 336 (1171)
T TIGR01054 289 ----------LLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL-----GTGGIVYVSID 336 (1171)
T ss_pred ----------ccceEecCccccccceEEEEEeccc--HHHHHHHHHHHc-----CCCEEEEEecc
Confidence 1112234444556789999886654 345677777653 36899999997
No 41
>PRK14701 reverse gyrase; Provisional
Probab=99.41 E-value=6.6e-13 Score=132.86 Aligned_cols=120 Identities=16% Similarity=0.179 Sum_probs=85.0
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhc-----------cccHHHHHH----HHh-----------------
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS-----------GIFDEQMRT----IFG----------------- 48 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~-----------~~f~~~i~~----Il~----------------- 48 (189)
||||||+|.+++.. +...+++++|+||||.|++ .||.+++.. |+.
T Consensus 182 LV~TPgrL~~~~~~---l~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l 258 (1638)
T PRK14701 182 LVTTAQFLARNFPE---MKHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREIL 258 (1638)
T ss_pred EEECCchhHHhHHH---HhhCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhh
Confidence 68999999988764 2227899999999999987 589888875 432
Q ss_pred -----hCCCCCc-EEEEeecCCch--HHHHHHhhccccceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhh
Q psy9740 49 -----AVPKQKQ-TLLFSATMTDT--LEQVKSITKKQVGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQH 120 (189)
Q Consensus 49 -----~l~~~~Q-~il~SATl~~~--v~~l~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (189)
.+|+.+| .++||||++.. +.. ++++
T Consensus 259 ~~~~~~~~~~~~~ll~~SAT~~~r~~~~~----l~~~------------------------------------------- 291 (1638)
T PRK14701 259 NKEIEKIGNKIGCLIVASATGKAKGDRVK----LYRE------------------------------------------- 291 (1638)
T ss_pred hhhhhhcCCCccEEEEEecCCCchhHHHH----Hhhc-------------------------------------------
Confidence 3456667 56799999864 332 3344
Q ss_pred HHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 121 IVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
+..+.++.......++.|.|+.++...| ..|.++++.. ..++||||||++
T Consensus 292 -------------~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-----g~~gIVF~~t~~ 341 (1638)
T PRK14701 292 -------------LLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL-----GKGGLIFVPIDE 341 (1638)
T ss_pred -------------CeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-----CCCeEEEEeccc
Confidence 2223334444566789999988876555 4677777653 368999999974
No 42
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.41 E-value=6.9e-13 Score=125.02 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=55.9
Q ss_pred CeeehHhhHHHHhcCC---CcccCceeeEEeccchhhhccccHHHHHHHHhh-------CCCCCcEEEEeecCCchHHHH
Q psy9740 1 VIATPGRLADHLDTCN---TFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGA-------VPKQKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~---~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~-------l~~~~Q~il~SATl~~~v~~l 70 (189)
||+||++|...+...+ ...+++++++|+||||.|.+ .|...+..+++. .+.++|+++||||++...+ +
T Consensus 133 ivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~ 210 (742)
T TIGR03817 133 VLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-A 210 (742)
T ss_pred EEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-H
Confidence 5899999875332211 12389999999999999976 477776655544 4567899999999998754 6
Q ss_pred HHhhcccc
Q psy9740 71 KSITKKQV 78 (189)
Q Consensus 71 ~~~~l~~p 78 (189)
++.++.+|
T Consensus 211 ~~~l~g~~ 218 (742)
T TIGR03817 211 ASRLIGAP 218 (742)
T ss_pred HHHHcCCC
Confidence 77777764
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=99.39 E-value=1.5e-12 Score=122.44 Aligned_cols=72 Identities=22% Similarity=0.218 Sum_probs=64.2
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+|+||+++..++.. +...+++++++|+||+|.|.+.++...++.++..++.+.|++++|||++. ..+++.++
T Consensus 118 iV~Tpe~~~~ll~~-~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl 189 (720)
T PRK00254 118 IIATAEKFDSLLRH-GSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWL 189 (720)
T ss_pred EEEcHHHHHHHHhC-CchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHh
Confidence 58999999999876 66779999999999999999999999999999999999999999999975 56776644
No 44
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.33 E-value=6.1e-12 Score=124.65 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=60.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccc----cHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGI----FDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITK 75 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~----f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l 75 (189)
||+||++|..++.......++++++||+||+|.|++.. +...+++|...++.+.|+|++|||+++ .+++++++.
T Consensus 103 LVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n-~eevA~~L~ 180 (1490)
T PRK09751 103 LITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRS-ASDVAAFLG 180 (1490)
T ss_pred EEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCC-HHHHHHHhc
Confidence 69999999998875233579999999999999999753 456677777778888999999999986 567776554
No 45
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.32 E-value=8e-12 Score=118.70 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=57.4
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccch-hhhccccHH-HHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEAD-RLLSGIFDE-QMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD-~ll~~~f~~-~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
+|+|||+|++++.. ...+++++++|+|||| ++++.++.- .+..+...++++.|++++|||++.+. + ..++.+
T Consensus 94 ~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~--l-~~~l~~ 167 (819)
T TIGR01970 94 EVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER--L-SSLLPD 167 (819)
T ss_pred EEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH--H-HHHcCC
Confidence 48999999999975 4689999999999999 588877643 34567777888999999999998764 2 455554
No 46
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.30 E-value=9.4e-12 Score=118.22 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=56.1
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchh-hhcccc-HHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADR-LLSGIF-DEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~-ll~~~f-~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
+|+|||+|++++.. ...+++++++|+||||. +++.++ ...+..+++.++++.|++++|||++.+. + ..++.+
T Consensus 97 ~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~~--l-~~~~~~ 170 (812)
T PRK11664 97 EVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDR--L-QQLLPD 170 (812)
T ss_pred EEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHHH--H-HHhcCC
Confidence 48999999999874 46899999999999997 566543 3445667788888999999999998752 3 345544
No 47
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.29 E-value=6.6e-12 Score=99.78 Aligned_cols=78 Identities=45% Similarity=0.708 Sum_probs=72.7
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
+||||+++.+++.. +...+++++++|+||||.|.+.+|...+..+.+.+++.+|++++|||++..+..+++.++.+|.
T Consensus 123 iv~T~~~l~~~l~~-~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~ 200 (203)
T cd00268 123 VVATPGRLLDLLER-GKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPV 200 (203)
T ss_pred EEEChHHHHHHHHc-CCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCE
Confidence 58999999999987 7788999999999999999999999999999999999999999999999999999999888753
No 48
>PRK02362 ski2-like helicase; Provisional
Probab=99.28 E-value=1.2e-11 Score=116.69 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=60.4
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhC---CCCCcEEEEeecCCchHHHHHHhh
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAV---PKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l---~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+||||+|+..++.. +...+++++++|+||+|.|.+.++...++.++..+ +.+.|++++|||++. ..+++.++
T Consensus 117 iV~Tpek~~~llr~-~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl 191 (737)
T PRK02362 117 IVATSEKVDSLLRN-GAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWL 191 (737)
T ss_pred EEECHHHHHHHHhc-ChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHh
Confidence 58999999999886 66678999999999999999988998888886554 568999999999974 45666554
No 49
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.26 E-value=3.8e-11 Score=117.53 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=54.7
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccch-hhhccccHHH-HHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEAD-RLLSGIFDEQ-MRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD-~ll~~~f~~~-i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
+++|||+|++++.. . ..|++++++|||||| ++++.+|.-. +..++..- ++.|++++|||++. +.+++.+...
T Consensus 167 ~v~TpG~LL~~l~~-d-~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r-pdlKvILmSATid~--e~fs~~F~~a 240 (1294)
T PRK11131 167 KLMTDGILLAEIQQ-D-RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRR-PDLKVIITSATIDP--ERFSRHFNNA 240 (1294)
T ss_pred EEEChHHHHHHHhc-C-CccccCcEEEecCccccccccchHHHHHHHhhhcC-CCceEEEeeCCCCH--HHHHHHcCCC
Confidence 48999999999975 3 459999999999999 6899887653 44444332 46899999999974 4666665443
No 50
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.23 E-value=1.6e-11 Score=106.01 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=54.0
Q ss_pred CeeehHhhHHHHhcC-CC--cccCc--eeeEEeccchhhhccccHHHHHHHHhhCC-CCCcEEEEeecCCchHHHHHHhh
Q psy9740 1 VIATPGRLADHLDTC-NT--FSLNR--IKFLVLDEADRLLSGIFDEQMRTIFGAVP-KQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 1 lV~TPgrl~~ll~~~-~~--~~l~~--l~~lVlDEaD~ll~~~f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+|+||+++...+... +. ..+.. .+++|+||||.|++.++.. +..+++.++ .+.|++++|||+|+.+.++++..
T Consensus 98 ~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~ 176 (358)
T TIGR01587 98 TVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPILLMSATLPKFLKEYAEKI 176 (358)
T ss_pred eeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEEEEecCchHHHHHHHhcC
Confidence 479999999877641 11 12222 3789999999999876544 677776665 47899999999997777766555
Q ss_pred cc
Q psy9740 75 KK 76 (189)
Q Consensus 75 l~ 76 (189)
..
T Consensus 177 ~~ 178 (358)
T TIGR01587 177 GY 178 (358)
T ss_pred CC
Confidence 43
No 51
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.17 E-value=5.6e-11 Score=91.19 Aligned_cols=69 Identities=28% Similarity=0.550 Sum_probs=61.0
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCC--CCCcEEEEeecCCchHHHH
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVP--KQKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~--~~~Q~il~SATl~~~v~~l 70 (189)
+|+||++|.+++.. +..++.+++++|+||+|.+.+.++...+..|++.+. ++.|++++|||++++++.+
T Consensus 99 lv~T~~~l~~~~~~-~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 99 LVTTPEQLLDLISN-GKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLPSNVEKL 169 (169)
T ss_dssp EEEEHHHHHHHHHT-TSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSSTHHHHHH
T ss_pred cccCcchhhccccc-cccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCChhHhhC
Confidence 58999999999998 556888899999999999999999999999998884 3689999999999777653
No 52
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.15 E-value=1.3e-10 Score=107.43 Aligned_cols=69 Identities=19% Similarity=0.113 Sum_probs=50.7
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccc--cHHHHHHH---HhhCCCCCcEEEEeecCCchHHHHH
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGI--FDEQMRTI---FGAVPKQKQTLLFSATMTDTLEQVK 71 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~--f~~~i~~I---l~~l~~~~Q~il~SATl~~~v~~l~ 71 (189)
+++||+|+...... ..+...++.++|+||||.+.++| |++++..| ...+ ++.|++++|||.+..+..-.
T Consensus 119 l~~tPe~l~~~~~~-~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di 192 (607)
T PRK11057 119 LYIAPERLMMDNFL-EHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDI 192 (607)
T ss_pred EEEChHHhcChHHH-HHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHH
Confidence 47899998732211 23455689999999999999987 77776555 3333 47889999999998876543
No 53
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.15 E-value=1.1e-10 Score=112.05 Aligned_cols=72 Identities=25% Similarity=0.332 Sum_probs=54.6
Q ss_pred CeeehHhhHHHHhcCCCc--ccCceeeEEeccchhhhccccHHHH----HHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 1 VIATPGRLADHLDTCNTF--SLNRIKFLVLDEADRLLSGIFDEQM----RTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~--~l~~l~~lVlDEaD~ll~~~f~~~i----~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
||+||++|..++.. +.+ .++++++||+||||.|++..+...+ .++....+...|++++|||+++ ..++++++
T Consensus 150 lVtTPE~L~~ll~~-~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L 227 (876)
T PRK13767 150 LITTPESLAILLNS-PKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFL 227 (876)
T ss_pred EEecHHHHHHHhcC-hhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHh
Confidence 58999999988865 443 5899999999999999987655554 4444444568899999999975 44555444
No 54
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.14 E-value=1.1e-10 Score=108.77 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=45.1
Q ss_pred ccCceeeEEeccchhhhccccHHHHHHHHhhC-CCCCcEEEEeecCCchHHHHHHhhcccc
Q psy9740 19 SLNRIKFLVLDEADRLLSGIFDEQMRTIFGAV-PKQKQTLLFSATMTDTLEQVKSITKKQV 78 (189)
Q Consensus 19 ~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l-~~~~Q~il~SATl~~~v~~l~~~~l~~p 78 (189)
.|++++++|+||||++...+ +.+..+++.+ ++.+|+++||||++++++.+ ..++.+|
T Consensus 288 ~L~~v~~VVIDEaHEr~~~~--DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p 345 (675)
T PHA02653 288 KLFDYGTVIIDEVHEHDQIG--DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNP 345 (675)
T ss_pred ccccCCEEEccccccCccch--hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCC
Confidence 58899999999999998775 4455566544 35579999999999999887 4677773
No 55
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.14 E-value=1.5e-10 Score=106.65 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=56.4
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccc--cHHHHHHHH---hhCCCCCcEEEEeecCCchHHHHHHhhc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGI--FDEQMRTIF---GAVPKQKQTLLFSATMTDTLEQVKSITK 75 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~--f~~~i~~Il---~~l~~~~Q~il~SATl~~~v~~l~~~~l 75 (189)
+++||+++...... +.+...++.++|+||||.+.++| |++.+..|. ..+|.. +++++|||.++.+.+-....+
T Consensus 107 l~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~-~vi~lTAT~~~~~~~~i~~~l 184 (591)
T TIGR01389 107 LYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQV-PRIALTATADAETRQDIRELL 184 (591)
T ss_pred EEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCC-CEEEEEeCCCHHHHHHHHHHc
Confidence 46899998754433 44567899999999999999877 788776654 445544 499999999999887666555
Q ss_pred cc
Q psy9740 76 KQ 77 (189)
Q Consensus 76 ~~ 77 (189)
..
T Consensus 185 ~~ 186 (591)
T TIGR01389 185 RL 186 (591)
T ss_pred CC
Confidence 43
No 56
>PRK01172 ski2-like helicase; Provisional
Probab=99.13 E-value=1.5e-10 Score=108.22 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=59.8
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhh---CCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGA---VPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~---l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+|+||+|+..++.. ....+++++++|+||||.+.+.++...++.++.. ++++.|++++|||++. ..++++++
T Consensus 115 iv~Tpek~~~l~~~-~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl 189 (674)
T PRK01172 115 VILTSEKADSLIHH-DPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWL 189 (674)
T ss_pred EEECHHHHHHHHhC-ChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHh
Confidence 58999999998876 5667999999999999999998888888877654 4568999999999974 56676644
No 57
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=1.5e-10 Score=103.91 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=53.3
Q ss_pred CeeehHhhHHHHhcCCCc-ccCceeeEEeccchhhhccc--cHHHHHHH---HhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 1 VIATPGRLADHLDTCNTF-SLNRIKFLVLDEADRLLSGI--FDEQMRTI---FGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~-~l~~l~~lVlDEaD~ll~~~--f~~~i~~I---l~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
|++||+++.........+ ...+++++|+||||.++++| |+++...| ...+ ++.|++++|||++..+.+.....
T Consensus 105 l~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~ 183 (470)
T TIGR00614 105 LYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQ 183 (470)
T ss_pred EEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHH
Confidence 578999976422110223 57899999999999999987 77776665 3334 46789999999999887655444
Q ss_pred c
Q psy9740 75 K 75 (189)
Q Consensus 75 l 75 (189)
+
T Consensus 184 l 184 (470)
T TIGR00614 184 L 184 (470)
T ss_pred c
Confidence 3
No 58
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.08 E-value=4.4e-10 Score=108.71 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=54.8
Q ss_pred CeeehHhhHH---HHhcCCCc-ccCceeeEEeccchhhhccc--cHHHHHHH--HhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 1 VIATPGRLAD---HLDTCNTF-SLNRIKFLVLDEADRLLSGI--FDEQMRTI--FGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 1 lV~TPgrl~~---ll~~~~~~-~l~~l~~lVlDEaD~ll~~~--f~~~i~~I--l~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
|++||+||.. ++.....+ ....+.++||||||.|+++| |+++...+ +....+..|++++|||++..+.+.+.
T Consensus 556 LyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~ 635 (1195)
T PLN03137 556 LYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVV 635 (1195)
T ss_pred EEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHH
Confidence 5899999863 22211112 23568999999999999998 88887764 44444578899999999999887655
Q ss_pred hhcc
Q psy9740 73 ITKK 76 (189)
Q Consensus 73 ~~l~ 76 (189)
..+.
T Consensus 636 ~~L~ 639 (1195)
T PLN03137 636 QALG 639 (1195)
T ss_pred HHcC
Confidence 5544
No 59
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.99 E-value=1.9e-09 Score=105.73 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=53.6
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhcccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQV 78 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p 78 (189)
|||||+.+ . ..+.++++.++|+||+|++ |+.. ...++.++.++|+++||||.++.+..++...+++|
T Consensus 707 VVgTp~lL-----~-~~v~~~~L~lLVIDEahrf---G~~~--~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~ 773 (1147)
T PRK10689 707 LIGTHKLL-----Q-SDVKWKDLGLLIVDEEHRF---GVRH--KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDL 773 (1147)
T ss_pred EEECHHHH-----h-CCCCHhhCCEEEEechhhc---chhH--HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCc
Confidence 68999633 2 4577899999999999997 4332 45567788999999999999888888888888773
No 60
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.97 E-value=4e-09 Score=103.76 Aligned_cols=72 Identities=21% Similarity=0.224 Sum_probs=56.6
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccch-hhhccccHHH-HHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEAD-RLLSGIFDEQ-MRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD-~ll~~~f~~~-i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
+++|||+|+..+.. .-.|++++++|+|||| ++++.+|.-. +..++... ++.|++++|||+.. +.+++.+...
T Consensus 160 ~~~TdGiLLr~l~~--d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSATld~--~~fa~~F~~a 233 (1283)
T TIGR01967 160 KLMTDGILLAETQQ--DRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSATIDP--ERFSRHFNNA 233 (1283)
T ss_pred eeccccHHHHHhhh--CcccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCCcCH--HHHHHHhcCC
Confidence 47899999998865 3458999999999999 5999987764 77776554 47899999999964 5666666443
No 61
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.93 E-value=5.4e-09 Score=100.65 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=50.7
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
|||||. + + . +.+.+++++++|+||+|++ .......++.++++.|++++|||..+....++...+.+
T Consensus 558 VIGTp~-l---l-~-~~v~f~~L~llVIDEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d 623 (926)
T TIGR00580 558 LIGTHK-L---L-Q-KDVKFKDLGLLIIDEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRD 623 (926)
T ss_pred EEchHH-H---h-h-CCCCcccCCEEEeeccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCC
Confidence 589993 3 2 2 5678999999999999994 33445667778889999999999877776666555555
No 62
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.91 E-value=1.3e-08 Score=88.62 Aligned_cols=74 Identities=11% Similarity=0.035 Sum_probs=48.1
Q ss_pred CeeehHhhHHHHhcC---CCc----ccCceeeEEeccchhhhccc-----cHHHHHHHHhhCCCCCcEEEEeecCCchHH
Q psy9740 1 VIATPGRLADHLDTC---NTF----SLNRIKFLVLDEADRLLSGI-----FDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 1 lV~TPgrl~~ll~~~---~~~----~l~~l~~lVlDEaD~ll~~~-----f~~~i~~Il~~l~~~~Q~il~SATl~~~v~ 68 (189)
+++||..|..++... +.. .+.+++++|+||+|.+-..+ +.-....++.......+++++|||+++.+.
T Consensus 117 llT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~ 196 (357)
T TIGR03158 117 LLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALI 196 (357)
T ss_pred EEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHH
Confidence 356677776555320 111 26899999999999975332 112334444444456799999999999877
Q ss_pred HHHHhh
Q psy9740 69 QVKSIT 74 (189)
Q Consensus 69 ~l~~~~ 74 (189)
+.....
T Consensus 197 ~~l~~~ 202 (357)
T TIGR03158 197 LRLQNA 202 (357)
T ss_pred HHHHhc
Confidence 766544
No 63
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.86 E-value=1e-08 Score=92.85 Aligned_cols=125 Identities=20% Similarity=0.221 Sum_probs=91.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhh---CCCCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGA---VPKQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~---l~~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
||||-.-+-.++.. + -.+.++..+|+||.|.|=+....+.+.-+++. +.+..|.+..|||+- +-+++|+.+-.+
T Consensus 319 IVGTYEGiD~lLRt-g-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVg-Np~elA~~l~a~ 395 (830)
T COG1202 319 IVGTYEGIDYLLRT-G-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVG-NPEELAKKLGAK 395 (830)
T ss_pred EEeechhHHHHHHc-C-CcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecC-ChHHHHHHhCCe
Confidence 58899888888876 4 78999999999999999876666666665544 446899999999984 346777776555
Q ss_pred cceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEec
Q psy9740 78 VGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCP 157 (189)
Q Consensus 78 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~ 157 (189)
.+.. +.. |--|..+.+.+.
T Consensus 396 --------------------------------------------------------lV~y--~~R---PVplErHlvf~~ 414 (830)
T COG1202 396 --------------------------------------------------------LVLY--DER---PVPLERHLVFAR 414 (830)
T ss_pred --------------------------------------------------------eEee--cCC---CCChhHeeeeec
Confidence 2221 111 123444555565
Q ss_pred -CcchHHHHHHHHHHHH----hcCCCCeEEEEecCCC
Q psy9740 158 -YDVKDGYLVETVRLYR----EKSPRGAIVIFTDTCR 189 (189)
Q Consensus 158 -~~~K~~~L~~lL~~~~----~~~~~~~~iIF~ns~~ 189 (189)
+.+|......+.+... ++.-.+|+|||+||||
T Consensus 415 ~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRr 451 (830)
T COG1202 415 NESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRR 451 (830)
T ss_pred CchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchh
Confidence 7789999888888655 4566799999999985
No 64
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.80 E-value=1.6e-08 Score=95.75 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=63.4
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCC---CCcEEEEeecCCchHHHHHHhhccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK---QKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~---~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
||+||.++-.+..+ .......+++||+||+|.+.+....+-++.|+..+.. ..|++..|||+| +..++|++.--+
T Consensus 126 iVtT~EK~Dsl~R~-~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlp-N~~evA~wL~a~ 203 (766)
T COG1204 126 IVTTPEKLDSLTRK-RPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLP-NAEEVADWLNAK 203 (766)
T ss_pred EEEchHHhhHhhhc-CcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecC-CHHHHHHHhCCc
Confidence 69999999998887 5568999999999999999988778888888776653 479999999996 478888887766
No 65
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.56 E-value=4e-07 Score=85.56 Aligned_cols=59 Identities=17% Similarity=0.268 Sum_probs=42.6
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHH
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l 70 (189)
|||||+++. ..+.+++++++|+||+|++- ......+......+|++++|||..+....+
T Consensus 368 vVgT~~ll~------~~v~~~~l~lvVIDE~Hrfg-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~ 426 (681)
T PRK10917 368 VIGTHALIQ------DDVEFHNLGLVIIDEQHRFG-----VEQRLALREKGENPHVLVMTATPIPRTLAM 426 (681)
T ss_pred EEchHHHhc------ccchhcccceEEEechhhhh-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHH
Confidence 589999874 34568999999999999962 222333444456799999999976654433
No 66
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.52 E-value=5e-07 Score=85.63 Aligned_cols=74 Identities=24% Similarity=0.288 Sum_probs=58.3
Q ss_pred CeeehHhhHHHHhcCCCc--ccCceeeEEeccchhhhccccHHH----HHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 1 VIATPGRLADHLDTCNTF--SLNRIKFLVLDEADRLLSGIFDEQ----MRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~--~l~~l~~lVlDEaD~ll~~~f~~~----i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
||.||+-|.-++.. +.+ .|++++|+|+||.|.|.+....-+ ++++-...+ +.|.+..|||.. +.+++++++
T Consensus 127 LiTTPEsL~lll~~-~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~-~~~~varfL 203 (814)
T COG1201 127 LITTPESLAILLNS-PKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG-DFQRIGLSATVG-PPEEVAKFL 203 (814)
T ss_pred EEeChhHHHHHhcC-HHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc-ccEEEeehhccC-CHHHHHHHh
Confidence 68999999988876 444 599999999999999997654444 455555555 999999999997 566777777
Q ss_pred ccc
Q psy9740 75 KKQ 77 (189)
Q Consensus 75 l~~ 77 (189)
...
T Consensus 204 ~g~ 206 (814)
T COG1201 204 VGF 206 (814)
T ss_pred cCC
Confidence 655
No 67
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.52 E-value=2.8e-07 Score=70.85 Aligned_cols=76 Identities=36% Similarity=0.635 Sum_probs=68.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
+++||+++.+.+.. .......+.++|+||||.+....+...+..++..+++..+++++|||.+..+...+..+...
T Consensus 109 ~~~t~~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~ 184 (201)
T smart00487 109 LVTTPGRLLDLLEN-DLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLND 184 (201)
T ss_pred EEeChHHHHHHHHc-CCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCC
Confidence 47899999999987 55788899999999999999878999999999999889999999999999999988888876
No 68
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.36 E-value=5.9e-06 Score=73.80 Aligned_cols=76 Identities=28% Similarity=0.430 Sum_probs=58.3
Q ss_pred CeeehHhhHHHHhcC----CCc-ccCceeeEEeccchhhhccccHHHHHHHH---hhCCCC-------------------
Q psy9740 1 VIATPGRLADHLDTC----NTF-SLNRIKFLVLDEADRLLSGIFDEQMRTIF---GAVPKQ------------------- 53 (189)
Q Consensus 1 lV~TPgrl~~ll~~~----~~~-~l~~l~~lVlDEaD~ll~~~f~~~i~~Il---~~l~~~------------------- 53 (189)
|||+|--|.-.+... +.. .|+++..+|+|.||.|+-++| +.+..|+ ...|+.
T Consensus 135 IiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW-~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg~a~ 213 (442)
T PF06862_consen 135 IIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNW-EHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDGQAK 213 (442)
T ss_pred EEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhH-HHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCcch
Confidence 689999999888741 222 489999999999999986643 3344444 445531
Q ss_pred --CcEEEEeecCCchHHHHHHhhccc
Q psy9740 54 --KQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 54 --~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
+|++++|+...+++..+....+.+
T Consensus 214 ~~RQtii~S~~~~pe~~slf~~~~~N 239 (442)
T PF06862_consen 214 YYRQTIIFSSFQTPEINSLFNRHCQN 239 (442)
T ss_pred heeEeEEecCCCCHHHHHHHHhhCcC
Confidence 599999999999999999887776
No 69
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.27 E-value=4.6e-06 Score=77.75 Aligned_cols=57 Identities=21% Similarity=0.298 Sum_probs=39.5
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCC--CCCcEEEEeecCCchH
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVP--KQKQTLLFSATMTDTL 67 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~--~~~Q~il~SATl~~~v 67 (189)
|||||+++.+ .+.+.++.++|+||+|++-. .+-..+..... ..+|++++|||..+..
T Consensus 342 iVgT~~ll~~------~~~~~~l~lvVIDEaH~fg~----~qr~~l~~~~~~~~~~~~l~~SATp~prt 400 (630)
T TIGR00643 342 VVGTHALIQE------KVEFKRLALVIIDEQHRFGV----EQRKKLREKGQGGFTPHVLVMSATPIPRT 400 (630)
T ss_pred EEecHHHHhc------cccccccceEEEechhhccH----HHHHHHHHhcccCCCCCEEEEeCCCCcHH
Confidence 5899998753 46689999999999998522 12222333332 3689999999976543
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.09 E-value=1.6e-05 Score=75.20 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=27.1
Q ss_pred EEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 153 YVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 153 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
.+++...+|..++.+.++... ....++||||+|+
T Consensus 401 ~i~~~~~~K~~ai~~~i~~~~--~~~~pvLIft~s~ 434 (762)
T TIGR03714 401 KIYATLPEKLMATLEDVKEYH--ETGQPVLLITGSV 434 (762)
T ss_pred eEEECHHHHHHHHHHHHHHHh--hCCCCEEEEECcH
Confidence 566777789999999887654 3468999999986
No 71
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.06 E-value=9.3e-06 Score=74.72 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=53.0
Q ss_pred ehHhhHHHHhcCCCcccCceeeEEeccchhhhccc--cHHHHHHHH---hhCCCCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 4 TPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGI--FDEQMRTIF---GAVPKQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 4 TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~--f~~~i~~Il---~~l~~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
+|.||..---. ..+.-..+..+|+||||.+.++| |+++..++- ..+| +..++.++||-++.+..-+...+.-
T Consensus 114 sPErl~~~~f~-~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l 190 (590)
T COG0514 114 SPERLMSPRFL-ELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGL 190 (590)
T ss_pred CchhhcChHHH-HHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcC
Confidence 56665532222 23345778899999999999998 999987765 4454 7889999999999988766555543
No 72
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.02 E-value=3.3e-05 Score=73.52 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=27.9
Q ss_pred CeeehHhh-HHHHhcC-----CCcccCceeeEEeccchhhh
Q psy9740 1 VIATPGRL-ADHLDTC-----NTFSLNRIKFLVLDEADRLL 35 (189)
Q Consensus 1 lV~TPgrl-~~ll~~~-----~~~~l~~l~~lVlDEaD~ll 35 (189)
++||||+| .|++..+ ....++.++|+|+||||.||
T Consensus 172 vygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 172 IYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred EEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 58999999 6666652 12367999999999999998
No 73
>PHA02558 uvsW UvsW helicase; Provisional
Probab=97.94 E-value=8.2e-06 Score=74.13 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=46.8
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCch
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDT 66 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~ 66 (189)
+|+||+++.+... ..++++.++|+||||.+.+. .+..++..+++.+|++++|||.+..
T Consensus 205 ~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 205 VVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGLTGSLRDG 262 (501)
T ss_pred EEeeHHHHhhchh----hhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEEeccCCCc
Confidence 5899999976432 24789999999999999764 4567778888889999999998754
No 74
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.91 E-value=7.8e-05 Score=70.24 Aligned_cols=63 Identities=17% Similarity=0.108 Sum_probs=41.4
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhcccc---HHHHHH--HHhhCCCCCcEEEEeecCCchHHHHH
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIF---DEQMRT--IFGAVPKQKQTLLFSATMTDTLEQVK 71 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f---~~~i~~--Il~~l~~~~Q~il~SATl~~~v~~l~ 71 (189)
|||||+++. ..++++.++|+||+|...-.+. .-.... ++.....+.|++++|||.+.+....+
T Consensus 245 VVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~~s~~~~ 312 (679)
T PRK05580 245 VIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSATPSLESLANA 312 (679)
T ss_pred EEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCHHHHHHH
Confidence 588998764 3478899999999997642211 111222 23334568999999999766655443
No 75
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=97.89 E-value=5.1e-05 Score=72.41 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=29.5
Q ss_pred CeeehHhh-HHHHhcCCC------cccCceeeEEeccchhhh
Q psy9740 1 VIATPGRL-ADHLDTCNT------FSLNRIKFLVLDEADRLL 35 (189)
Q Consensus 1 lV~TPgrl-~~ll~~~~~------~~l~~l~~lVlDEaD~ll 35 (189)
++||||+| .|++.. +. ..++.+.|+|+||||.||
T Consensus 174 ~ygT~~elgfDyLrd-~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 174 TYGTNNEFGFDYLRD-NMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred EEECCcchhhhhhhc-ccccchhhhcccccceEEEechhhhe
Confidence 58999999 999987 33 357899999999999998
No 76
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.89 E-value=2.9e-05 Score=56.05 Aligned_cols=62 Identities=45% Similarity=0.641 Sum_probs=47.6
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecC
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl 63 (189)
+++|++.+...... .........++|+||+|.+....+...............+++++|||.
T Consensus 83 ~i~t~~~~~~~~~~-~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 83 VVGTPGRLLDELER-LKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred EEECcHHHHHHHHc-CCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 47899999988876 445567889999999999987765554433444456788999999994
No 77
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=97.88 E-value=5.5e-05 Score=72.52 Aligned_cols=35 Identities=34% Similarity=0.515 Sum_probs=29.9
Q ss_pred CeeehHhh-HHHHhcCCCccc-----CceeeEEeccchhhh
Q psy9740 1 VIATPGRL-ADHLDTCNTFSL-----NRIKFLVLDEADRLL 35 (189)
Q Consensus 1 lV~TPgrl-~~ll~~~~~~~l-----~~l~~lVlDEaD~ll 35 (189)
++|||||| .|++..+-.+++ +.+.|+|+||||.||
T Consensus 175 vygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 175 VYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred EEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 58999999 999987324555 699999999999998
No 78
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.88 E-value=0.00011 Score=70.71 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=47.3
Q ss_pred CeeehHhhHHHHhcCCC---cccCceeeEEeccchhhhccccHHHHHHHH----h---hCCCCCcEEEEeecCCchHHHH
Q psy9740 1 VIATPGRLADHLDTCNT---FSLNRIKFLVLDEADRLLSGIFDEQMRTIF----G---AVPKQKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~---~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il----~---~l~~~~Q~il~SATl~~~v~~l 70 (189)
|+++|.=|-.++...+. .-+++++|||+||+|..- ..|...+.-++ . ..+...|+++.|||+...- +.
T Consensus 171 llTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr-Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~ 248 (851)
T COG1205 171 LLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR-GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EF 248 (851)
T ss_pred EEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc-ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HH
Confidence 46677666664444121 246889999999999983 22444444333 3 3346899999999996553 44
Q ss_pred HHhhccc
Q psy9740 71 KSITKKQ 77 (189)
Q Consensus 71 ~~~~l~~ 77 (189)
++.+...
T Consensus 249 ~~~l~~~ 255 (851)
T COG1205 249 AEELFGR 255 (851)
T ss_pred HHHhcCC
Confidence 4444444
No 79
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.81 E-value=0.00014 Score=66.33 Aligned_cols=59 Identities=19% Similarity=0.131 Sum_probs=37.4
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccc-----c-HHHHHHHHhhCCCCCcEEEEeecCCchHH
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGI-----F-DEQMRTIFGAVPKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~-----f-~~~i~~Il~~l~~~~Q~il~SATl~~~v~ 68 (189)
||||++.+. ..++++.++|+||+|...-.+ | ..++.... ....+.+++++|||-+.+..
T Consensus 80 VVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~r-a~~~~~~vil~SATPsles~ 144 (505)
T TIGR00595 80 VIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYR-AKKFNCPVVLGSATPSLESY 144 (505)
T ss_pred EECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHH-HHhcCCCEEEEeCCCCHHHH
Confidence 578887653 247889999999998765222 1 12232222 23358899999999544433
No 80
>KOG0952|consensus
Probab=97.81 E-value=4.2e-05 Score=73.64 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=52.9
Q ss_pred CeeehHhhHHHHhcCC--CcccCceeeEEeccchhhhccccHHHHHHHHhhCC-------CCCcEEEEeecCCchHHHHH
Q psy9740 1 VIATPGRLADHLDTCN--TFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVP-------KQKQTLLFSATMTDTLEQVK 71 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~--~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~-------~~~Q~il~SATl~~~v~~l~ 71 (189)
||.||.+.--.-.... .--++.++.||+||+|.|-+. ..+-++.|+..+. ..-.++.+|||+| +.+++|
T Consensus 215 iVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEtiVaRtlr~vessqs~IRivgLSATlP-N~eDvA 292 (1230)
T KOG0952|consen 215 IVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETIVARTLRLVESSQSMIRIVGLSATLP-NYEDVA 292 (1230)
T ss_pred EEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHHHHHHHHHHHhhhhheEEEEeeccCC-CHHHHH
Confidence 5889998654433311 124689999999999977554 6777777765543 3557789999996 477787
Q ss_pred Hhhccc
Q psy9740 72 SITKKQ 77 (189)
Q Consensus 72 ~~~l~~ 77 (189)
+++--+
T Consensus 293 ~fL~vn 298 (1230)
T KOG0952|consen 293 RFLRVN 298 (1230)
T ss_pred HHhcCC
Confidence 776655
No 81
>PRK09694 helicase Cas3; Provisional
Probab=97.72 E-value=0.00013 Score=70.33 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=48.7
Q ss_pred CeeehHhhHHHHhcCCCcccCce----eeEEeccchhhhccccHHHHHHHHhhCC-CCCcEEEEeecCCchHHH-HHHhh
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRI----KFLVLDEADRLLSGIFDEQMRTIFGAVP-KQKQTLLFSATMTDTLEQ-VKSIT 74 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l----~~lVlDEaD~ll~~~f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~~-l~~~~ 74 (189)
+|||+-.++..+-..+...++.. +.||+||+|-. +......+..+++.+. ....++++|||+|...++ +.+.+
T Consensus 414 ~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~ 492 (878)
T PRK09694 414 GVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTY 492 (878)
T ss_pred EEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHh
Confidence 47888887755444233333333 48999999997 5545556667776654 366799999999998764 44433
No 82
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.44 E-value=6e-05 Score=72.46 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=30.2
Q ss_pred CeeehHhh-HHHHhcCCCcccC-------ceeeEEeccchhhhc
Q psy9740 1 VIATPGRL-ADHLDTCNTFSLN-------RIKFLVLDEADRLLS 36 (189)
Q Consensus 1 lV~TPgrl-~~ll~~~~~~~l~-------~l~~lVlDEaD~ll~ 36 (189)
+||||||| .+++.. +.+.++ .++|+|+||||.||-
T Consensus 187 VygTPgRLgfDyLrd-~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 187 VYGTASEFGFDYLRD-NSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred EEECCChhHHHHhhC-CCCCcCHHHhhcccccEEEEechhhhhh
Confidence 58999999 999988 666666 558999999999984
No 83
>PRK13766 Hef nuclease; Provisional
Probab=97.37 E-value=0.00043 Score=65.84 Aligned_cols=63 Identities=22% Similarity=0.307 Sum_probs=49.6
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCC
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMT 64 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~ 64 (189)
+|+||+.+...+.. +.+.+.++.++|+||||++........+...+....+..+++.+|||-.
T Consensus 111 iv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~ 173 (773)
T PRK13766 111 IVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPG 173 (773)
T ss_pred EEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCC
Confidence 58999999887766 7788999999999999999865444455555544556788999999953
No 84
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0015 Score=63.70 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=59.0
Q ss_pred eeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhc
Q psy9740 2 IATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITK 75 (189)
Q Consensus 2 V~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l 75 (189)
|-|-.-|..|+.. +...+..+.+||+||+|-|-+....--=+.++-.+|+..|++++|||+|.. .+++.+.-
T Consensus 210 vMTTEILRnMlyr-g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~-~EF~~Wi~ 281 (1041)
T COG4581 210 VMTTEILRNMLYR-GSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNA-EEFAEWIQ 281 (1041)
T ss_pred EeeHHHHHHHhcc-CcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCCCCH-HHHHHHHH
Confidence 4566778899988 889999999999999999988865555567788899999999999999764 55655554
No 85
>KOG0948|consensus
Probab=97.09 E-value=0.0011 Score=62.42 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=55.6
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
||-|-.-|..|+.. ++--++.+.++|+||.|-|-|....--=+.=+=.+|++...+++|||+|. ..++|+|..+-
T Consensus 215 LVMTTEILRsMLYR-GSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPN-A~qFAeWI~~i 289 (1041)
T KOG0948|consen 215 LVMTTEILRSMLYR-GSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPN-ARQFAEWICHI 289 (1041)
T ss_pred eeeHHHHHHHHHhc-cchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccCCC-HHHHHHHHHHH
Confidence 46677788889988 88889999999999999999764221111112356899999999999976 45666666543
No 86
>KOG0351|consensus
Probab=96.96 E-value=0.0038 Score=60.78 Aligned_cols=55 Identities=15% Similarity=0.059 Sum_probs=42.3
Q ss_pred eeeEEeccchhhhccc--cHHHHHHHHhhCC--CCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 23 IKFLVLDEADRLLSGI--FDEQMRTIFGAVP--KQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 23 l~~lVlDEaD~ll~~~--f~~~i~~Il~~l~--~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
+..+|+||||....+| |+++-.++-.... ...-+|..+||.+..|++-+-..+.-
T Consensus 386 lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l 444 (941)
T KOG0351|consen 386 LALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGL 444 (941)
T ss_pred eEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCC
Confidence 8999999999999998 9999877654332 23568899999999988765444443
No 87
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.85 E-value=0.00085 Score=55.99 Aligned_cols=28 Identities=43% Similarity=0.711 Sum_probs=26.7
Q ss_pred eeehHhhHHHHhcCCCcccCceeeEEecc
Q psy9740 2 IATPGRLADHLDTCNTFSLNRIKFLVLDE 30 (189)
Q Consensus 2 V~TPgrl~~ll~~~~~~~l~~l~~lVlDE 30 (189)
|||||||.++++. +.+.+++++++|+|-
T Consensus 182 vGTP~Rl~kLle~-~~L~l~~l~~ivlD~ 209 (252)
T PF14617_consen 182 VGTPGRLSKLLEN-GALSLSNLKRIVLDW 209 (252)
T ss_pred EeChHHHHHHHHc-CCCCcccCeEEEEcC
Confidence 8999999999988 999999999999995
No 88
>KOG0951|consensus
Probab=96.75 E-value=0.0017 Score=63.99 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=42.9
Q ss_pred CeeehHhhHHHHhcCCC-cccCceeeEEeccchhhhccccHHHHHHHHhhCC-------CCCcEEEEeecCCc
Q psy9740 1 VIATPGRLADHLDTCNT-FSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVP-------KQKQTLLFSATMTD 65 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~-~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~-------~~~Q~il~SATl~~ 65 (189)
+||||.+.--.-++.+. -..+-++.+|+||.|.+-|. ..+-++.|....- ..+..+..|||+|.
T Consensus 415 IV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPN 486 (1674)
T KOG0951|consen 415 IVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPN 486 (1674)
T ss_pred EEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCc
Confidence 58999986544333122 23556788999999977554 5566666554432 36788999999985
No 89
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=96.75 E-value=0.0006 Score=64.51 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=30.9
Q ss_pred CeeehHhh-HHHHhcCC-----CcccCceeeEEeccchhhhc
Q psy9740 1 VIATPGRL-ADHLDTCN-----TFSLNRIKFLVLDEADRLLS 36 (189)
Q Consensus 1 lV~TPgrl-~~ll~~~~-----~~~l~~l~~lVlDEaD~ll~ 36 (189)
++|||||| .+++..+- .+.++++.++|+||||.||-
T Consensus 149 vyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 149 TYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred EEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 58999999 99998731 35789999999999999984
No 90
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=96.65 E-value=0.012 Score=55.36 Aligned_cols=40 Identities=13% Similarity=0.006 Sum_probs=31.2
Q ss_pred hhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 147 EELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 147 ~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
....+.+++++..+|...|.+.++... ....++||||+|+
T Consensus 444 r~~~~~~v~~t~~~K~~aL~~~i~~~~--~~~~pvLIft~t~ 483 (656)
T PRK12898 444 RRHLPDEVFLTAAAKWAAVAARVRELH--AQGRPVLVGTRSV 483 (656)
T ss_pred ceecCCEEEeCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcH
Confidence 335567788888889999999998754 2346899999986
No 91
>KOG0947|consensus
Probab=96.62 E-value=0.0011 Score=63.68 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=55.9
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
||-|-.-|..|+.+ +.=-.+++.+||+||+|-+=|....--=+.++=++|++.+++|.|||.|... ++|.|
T Consensus 383 LIMTTEILRsMLYr-gadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~~-EFA~W 453 (1248)
T KOG0947|consen 383 LIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPNTL-EFADW 453 (1248)
T ss_pred EeehHHHHHHHHhc-ccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEEeccCCChH-HHHHH
Confidence 46677788889887 6666899999999999998776654444566778999999999999998764 44443
No 92
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=96.33 E-value=0.053 Score=47.35 Aligned_cols=63 Identities=27% Similarity=0.327 Sum_probs=38.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHH-HHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRT-IFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~-Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+|||--.|+.+-+. .+.+++||+|..-=.. -+.++. +-+...+.--++..|||-|.+.++-+.
T Consensus 189 vVaTtHQLlrFk~a--------FD~liIDEVDAFP~~~-d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~ 252 (441)
T COG4098 189 VVATTHQLLRFKQA--------FDLLIIDEVDAFPFSD-DQSLQYAVKKARKKEGATIYLTATPTKKLERKIL 252 (441)
T ss_pred EEEehHHHHHHHhh--------ccEEEEeccccccccC-CHHHHHHHHHhhcccCceEEEecCChHHHHHHhh
Confidence 46666666655433 4589999999863211 122222 223344566789999999887765443
No 93
>KOG0950|consensus
Probab=96.06 E-value=0.0071 Score=58.25 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=38.7
Q ss_pred ccCceeeEEeccchhhhccccHHHHHHHHhhC-----CCCCcEEEEeecCCch
Q psy9740 19 SLNRIKFLVLDEADRLLSGIFDEQMRTIFGAV-----PKQKQTLLFSATMTDT 66 (189)
Q Consensus 19 ~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l-----~~~~Q~il~SATl~~~ 66 (189)
.+..+.++|+||.|.+.+.+....++.++..+ ....|++..|||+|..
T Consensus 338 ~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 338 RLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred CccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCCh
Confidence 46778899999999999999888888777543 2346799999999753
No 94
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.91 E-value=0.09 Score=50.88 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=47.3
Q ss_pred eeehHhhHHHHhcCCCcccCceeeEEeccchhh-hccc-cHHHHHHHHhhCCCCCcEEEEeecCCch
Q psy9740 2 IATPGRLADHLDTCNTFSLNRIKFLVLDEADRL-LSGI-FDEQMRTIFGAVPKQKQTLLFSATMTDT 66 (189)
Q Consensus 2 V~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~l-l~~~-f~~~i~~Il~~l~~~~Q~il~SATl~~~ 66 (189)
+-|.|-|+..+.. ...|+...++|+||||.= ++.. ....+..++...+.+-.++++|||+..+
T Consensus 144 ~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~ 208 (845)
T COG1643 144 VMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAE 208 (845)
T ss_pred EeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHH
Confidence 4588999988874 456999999999999964 3333 3344566677777778999999998654
No 95
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=95.83 E-value=0.022 Score=51.67 Aligned_cols=67 Identities=22% Similarity=0.375 Sum_probs=51.1
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhcc-ccHHHHHHHHhhCCCCCcEEEEeecCCchHHH
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSG-IFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQ 69 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~-~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~ 69 (189)
+|+||.-+.+=+.. +.+++.++.++|+||||+=--. .|..-.+..++. .+++-++.+|||=-.+.+.
T Consensus 111 fvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~-~k~~~ilgLTASPGs~~ek 178 (542)
T COG1111 111 FVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS-AKNPLILGLTASPGSDLEK 178 (542)
T ss_pred EEeccHHHHhHHhc-CccChHHceEEEechhhhccCcchHHHHHHHHHHh-ccCceEEEEecCCCCCHHH
Confidence 48999999988887 9999999999999999996533 354444545544 4677899999996554433
No 96
>KOG0920|consensus
Probab=95.38 E-value=0.2 Score=48.77 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=50.1
Q ss_pred eeehHhhHHHHhcCCCcccCceeeEEeccchhhh-ccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 2 IATPGRLADHLDTCNTFSLNRIKFLVLDEADRLL-SGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 2 V~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll-~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
.||-|-|+..+. ..-.+..+.++|+||+|.=- +..|.--+-+.+-...++-+++++|||+.. ++.+.|+..
T Consensus 269 fcTtGvLLr~L~--~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~da---e~fs~YF~~ 340 (924)
T KOG0920|consen 269 FCTTGVLLRRLQ--SDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDA---ELFSDYFGG 340 (924)
T ss_pred EecHHHHHHHhc--cCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecch---HHHHHHhCC
Confidence 589999998886 46789999999999999753 344444433333333478899999999973 344455554
No 97
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=95.37 E-value=0.021 Score=54.42 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=41.8
Q ss_pred eeEEeccchhhhccccHHHHHHHHhhCC-CCCcEEEEeecCCchHHHHHHhhcccc
Q psy9740 24 KFLVLDEADRLLSGIFDEQMRTIFGAVP-KQKQTLLFSATMTDTLEQVKSITKKQV 78 (189)
Q Consensus 24 ~~lVlDEaD~ll~~~f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~~l~~~~l~~p 78 (189)
..+|+||+|.+-+.....-+..++..+. -+.-++++|||+|+-.++..+..+.+.
T Consensus 340 S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~ 395 (733)
T COG1203 340 SLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKG 395 (733)
T ss_pred hchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcc
Confidence 5789999999987754444555555544 377789999999999999887777763
No 98
>KOG0354|consensus
Probab=95.23 E-value=0.044 Score=51.95 Aligned_cols=69 Identities=25% Similarity=0.316 Sum_probs=53.0
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhcc-ccHHHHHHHHhhCCCCCcEEEEeecCCchHHH
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSG-IFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQ 69 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~-~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~ 69 (189)
+++||.-|.+.++..-...|+.+.++|+||||+=... .|-.-|+..+..-....|++.+|||...+...
T Consensus 158 ff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~ 227 (746)
T KOG0354|consen 158 FFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPGSKLEQ 227 (746)
T ss_pred EEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEecCCCccHHH
Confidence 4789999999888733334799999999999998744 47777777776655666999999998765433
No 99
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=95.21 E-value=0.15 Score=50.05 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=31.8
Q ss_pred ceeeEEeccchhhhcc-ccHHHHHHHHhhCC-CCCcEEEEeecCCc-hHHH-HHHhhccccc
Q psy9740 22 RIKFLVLDEADRLLSG-IFDEQMRTIFGAVP-KQKQTLLFSATMTD-TLEQ-VKSITKKQVG 79 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~-~f~~~i~~Il~~l~-~~~Q~il~SATl~~-~v~~-l~~~~l~~p~ 79 (189)
.-.++|+||||.+-.. +-...-.+.+..+. +.+-.++.|||=-. ...+ .+..-+-+|.
T Consensus 272 ~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~ 333 (956)
T PRK04914 272 EWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPD 333 (956)
T ss_pred CCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCC
Confidence 4579999999999621 11111133343333 34567999999532 3333 2333444454
No 100
>KOG3089|consensus
Probab=95.03 E-value=0.018 Score=47.08 Aligned_cols=27 Identities=41% Similarity=0.866 Sum_probs=25.2
Q ss_pred eeehHhhHHHHhcCCCcccCceeeEEec
Q psy9740 2 IATPGRLADHLDTCNTFSLNRIKFLVLD 29 (189)
Q Consensus 2 V~TPgrl~~ll~~~~~~~l~~l~~lVlD 29 (189)
||||||+.+++++ +.++++++.++|+|
T Consensus 201 IgTp~Ri~~lv~~-~~f~~~~lk~iIlD 227 (271)
T KOG3089|consen 201 IGTPGRIKELVKQ-GGFNLSPLKFIILD 227 (271)
T ss_pred ecCcHHHHHHHHh-cCCCCCcceeEEee
Confidence 8999999999999 77999999999876
No 101
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.66 E-value=0.16 Score=48.42 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=27.4
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCc
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTD 65 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~ 65 (189)
..-.++|+||||.+-...|. .++..+.. .-.+.+|||...
T Consensus 374 ~~~gLII~DEvH~lpA~~fr----~il~~l~a-~~RLGLTATP~R 413 (732)
T TIGR00603 374 REWGLILLDEVHVVPAAMFR----RVLTIVQA-HCKLGLTATLVR 413 (732)
T ss_pred ccCCEEEEEccccccHHHHH----HHHHhcCc-CcEEEEeecCcc
Confidence 35568999999999654443 45555543 345899999853
No 102
>KOG0922|consensus
Probab=94.36 E-value=0.51 Score=44.26 Aligned_cols=59 Identities=24% Similarity=0.313 Sum_probs=35.9
Q ss_pred ehHhhHHHHhcCCCcccCceeeEEeccchhh-hcc-ccHHHHHHHHhhCCCCCcEEEEeecCCc
Q psy9740 4 TPGRLADHLDTCNTFSLNRIKFLVLDEADRL-LSG-IFDEQMRTIFGAVPKQKQTLLFSATMTD 65 (189)
Q Consensus 4 TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~l-l~~-~f~~~i~~Il~~l~~~~Q~il~SATl~~ 65 (189)
|-|-|+..+. ..-.|+.-.++|+||||.= +.. =...-+++|++.- ++-.+++.|||+..
T Consensus 147 TDG~LLRE~l--~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIimSATlda 207 (674)
T KOG0922|consen 147 TDGMLLREIL--KDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLIIMSATLDA 207 (674)
T ss_pred cchHHHHHHh--cCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEEEEeeeecH
Confidence 5666665554 3456888999999999962 111 0222233333221 34578999999964
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=94.32 E-value=0.018 Score=55.72 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=29.7
Q ss_pred CeeehHhh-HHHHhcCCCccc-----CceeeEEeccchhhhc
Q psy9740 1 VIATPGRL-ADHLDTCNTFSL-----NRIKFLVLDEADRLLS 36 (189)
Q Consensus 1 lV~TPgrl-~~ll~~~~~~~l-----~~l~~lVlDEaD~ll~ 36 (189)
++||||+| .|++..+-.++. +.+.|+|+||||.||-
T Consensus 175 ~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 175 TYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred EEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 47999999 999987324444 8899999999999984
No 104
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=94.20 E-value=0.091 Score=39.97 Aligned_cols=40 Identities=28% Similarity=0.254 Sum_probs=27.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCC
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMT 64 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~ 64 (189)
.....++|+||||.+-...- .+.|+. .+..-++.+|||.+
T Consensus 144 ~~~~~~vI~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 144 KNKFDLVIIDEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp GGSESEEEEETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred cccCCEEEEehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 45667999999999976551 223333 45667899999964
No 105
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=94.08 E-value=0.051 Score=53.43 Aligned_cols=73 Identities=18% Similarity=0.094 Sum_probs=45.0
Q ss_pred CeeehHhhHHHHhc--CCCcccCc----eeeEEeccchhhhccccHHHHHHHHhhCC-CCCcEEEEeecCCchHHH-HHH
Q psy9740 1 VIATPGRLADHLDT--CNTFSLNR----IKFLVLDEADRLLSGIFDEQMRTIFGAVP-KQKQTLLFSATMTDTLEQ-VKS 72 (189)
Q Consensus 1 lV~TPgrl~~ll~~--~~~~~l~~----l~~lVlDEaD~ll~~~f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~~-l~~ 72 (189)
+|||+..++-.... .+...+.- =+.||+||+|.. |......+.+++.-+. -+.-+++.|||+|+.+.+ +.+
T Consensus 566 ~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY-D~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~~ 644 (1110)
T TIGR02562 566 LVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY-EPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLFR 644 (1110)
T ss_pred EEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC-CHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHH
Confidence 48999998877632 12222211 257899999975 3333344555554332 267789999999998654 334
Q ss_pred hh
Q psy9740 73 IT 74 (189)
Q Consensus 73 ~~ 74 (189)
-|
T Consensus 645 Ay 646 (1110)
T TIGR02562 645 AY 646 (1110)
T ss_pred HH
Confidence 44
No 106
>KOG2340|consensus
Probab=93.92 E-value=0.024 Score=51.90 Aligned_cols=76 Identities=29% Similarity=0.437 Sum_probs=58.4
Q ss_pred CeeehHhhHHHHhcCC----Cc-ccCceeeEEeccchhhhccccHHHHHHHHhhC---CCC-------------------
Q psy9740 1 VIATPGRLADHLDTCN----TF-SLNRIKFLVLDEADRLLSGIFDEQMRTIFGAV---PKQ------------------- 53 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~----~~-~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l---~~~------------------- 53 (189)
|||+|--|.-++.+++ .+ .|+.+.++|+|.||.|+-++| +.+..|+..+ |..
T Consensus 389 lVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~DfSRVR~wyL~~qsr 467 (698)
T KOG2340|consen 389 LVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDVDFSRVRMWYLDGQSR 467 (698)
T ss_pred EEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCCChhheehheeccHHH
Confidence 6899999887777422 22 379999999999999998764 4455666554 432
Q ss_pred --CcEEEEeecCCchHHHHHHhhccc
Q psy9740 54 --KQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 54 --~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
+|+++||+-..+.+..+...++.+
T Consensus 468 ~~rQtl~Fs~y~~~~~nS~fn~~c~N 493 (698)
T KOG2340|consen 468 YFRQTLLFSRYSHPLFNSLFNQYCQN 493 (698)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 599999999999998888777776
No 107
>KOG0353|consensus
Probab=92.30 E-value=0.59 Score=41.59 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=55.2
Q ss_pred eeehHhhHHH---Hhc-CCCcccCceeeEEeccchhhhccc--cHHHHHH--HHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 2 IATPGRLADH---LDT-CNTFSLNRIKFLVLDEADRLLSGI--FDEQMRT--IFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 2 V~TPgrl~~l---l~~-~~~~~l~~l~~lVlDEaD~ll~~~--f~~~i~~--Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
.-||.++..- +.. ++.+..+..+.+-+||+|.--.+| |+++... |++.--++.-++.++||-+.+|..-++.
T Consensus 191 yvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~ 270 (695)
T KOG0353|consen 191 YVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKD 270 (695)
T ss_pred EecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHH
Confidence 4588887642 111 255677889999999999999887 8888664 4555446777899999999988777666
Q ss_pred hcc
Q psy9740 74 TKK 76 (189)
Q Consensus 74 ~l~ 76 (189)
.+-
T Consensus 271 il~ 273 (695)
T KOG0353|consen 271 ILC 273 (695)
T ss_pred HHh
Confidence 554
No 108
>KOG0352|consensus
Probab=91.55 E-value=0.21 Score=44.91 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=45.3
Q ss_pred ccCceeeEEeccchhhhccc--cHHHHHHHHh--hCCCCCcEEEEeecCCchHHHH--HHhhccccc
Q psy9740 19 SLNRIKFLVLDEADRLLSGI--FDEQMRTIFG--AVPKQKQTLLFSATMTDTLEQV--KSITKKQVG 79 (189)
Q Consensus 19 ~l~~l~~lVlDEaD~ll~~~--f~~~i~~Il~--~l~~~~Q~il~SATl~~~v~~l--~~~~l~~p~ 79 (189)
+-.-++|+|+||||..-.+| |+++.-++=. .--.+.--+.++||-+.+|.+- +..-+++|.
T Consensus 138 ~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PV 204 (641)
T KOG0352|consen 138 NRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPV 204 (641)
T ss_pred hhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcH
Confidence 45678999999999999998 8998766532 2223555678899999999773 455666765
No 109
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=90.38 E-value=0.3 Score=39.04 Aligned_cols=40 Identities=25% Similarity=0.397 Sum_probs=33.3
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
.+.-+++|||+|.=||......+..++..+.+..|+++.|
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~T 196 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITT 196 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 4566899999999999999999999999999999999885
No 110
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=89.79 E-value=0.52 Score=38.85 Aligned_cols=46 Identities=24% Similarity=0.355 Sum_probs=28.1
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec-CCchHHHH
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT-MTDTLEQV 70 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT-l~~~v~~l 70 (189)
+-.++|+||+|.+ .+........+..+. ....+++||| ++....++
T Consensus 134 ~~~~vIvDEaH~~--k~~~s~~~~~l~~l~-~~~~~lLSgTP~~n~~~dl 180 (299)
T PF00176_consen 134 KWDRVIVDEAHRL--KNKDSKRYKALRKLR-ARYRWLLSGTPIQNSLEDL 180 (299)
T ss_dssp EEEEEEETTGGGG--TTTTSHHHHHHHCCC-ECEEEEE-SS-SSSGSHHH
T ss_pred cceeEEEeccccc--ccccccccccccccc-cceEEeecccccccccccc
Confidence 4788999999999 333333333344454 5667889999 34444443
No 111
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=88.92 E-value=0.61 Score=33.67 Aligned_cols=36 Identities=33% Similarity=0.528 Sum_probs=20.8
Q ss_pred eeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEee
Q psy9740 24 KFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSA 61 (189)
Q Consensus 24 ~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SA 61 (189)
..+|+||||.|.+..+.+.+..+.+ ..+.++++++.
T Consensus 89 ~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~ 124 (131)
T PF13401_consen 89 VLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGT 124 (131)
T ss_dssp EEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEES
T ss_pred eEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEEC
Confidence 7899999999653334444444333 23445555543
No 112
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=88.46 E-value=3.1 Score=40.32 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=26.4
Q ss_pred EEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 153 YVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 153 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
.++.+...|..++.+.+.... ....++||||+|+
T Consensus 417 ~i~~t~~~K~~al~~~i~~~~--~~g~pvLI~t~si 450 (796)
T PRK12906 417 LLYPTLDSKFNAVVKEIKERH--AKGQPVLVGTVAI 450 (796)
T ss_pred eEEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCcH
Confidence 445566779999999987654 4578999999985
No 113
>KOG0925|consensus
Probab=88.11 E-value=5.5 Score=36.71 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=39.7
Q ss_pred eehHhhHHHHhcCCC--------cccCceeeEEeccchhh-hcc-ccHHHHHHHHhhCCCCCcEEEEeecCCc
Q psy9740 3 ATPGRLADHLDTCNT--------FSLNRIKFLVLDEADRL-LSG-IFDEQMRTIFGAVPKQKQTLLFSATMTD 65 (189)
Q Consensus 3 ~TPgrl~~ll~~~~~--------~~l~~l~~lVlDEaD~l-l~~-~f~~~i~~Il~~l~~~~Q~il~SATl~~ 65 (189)
+||..++.++.. +. -.++.-..+|+||||.= +.. -...-++.++..-| +-.++..|||+-.
T Consensus 133 ~~~~T~Lky~tD-gmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rp-dLk~vvmSatl~a 203 (699)
T KOG0925|consen 133 TSPNTLLKYCTD-GMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRP-DLKLVVMSATLDA 203 (699)
T ss_pred CChhHHHHHhcc-hHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCC-CceEEEeecccch
Confidence 466666666655 32 24788899999999963 222 23444555554444 7789999999743
No 114
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=87.93 E-value=1.1 Score=43.43 Aligned_cols=63 Identities=17% Similarity=0.112 Sum_probs=50.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCC
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMT 64 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~ 64 (189)
+++||.-|..=+.. +.++++.+.-+|+||||++....-...|-++...-.+..=+..|||.-.
T Consensus 11 ~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 11 FSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred EEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 46799887744445 8899999999999999999887777777788777666667788888843
No 115
>KOG0926|consensus
Probab=87.75 E-value=1.3 Score=42.88 Aligned_cols=59 Identities=27% Similarity=0.363 Sum_probs=37.0
Q ss_pred ehHhhHHHHhcCCCcccCceeeEEeccchhhh-cc-ccHHHHHHHHhhC---CC------CCcEEEEeecCC
Q psy9740 4 TPGRLADHLDTCNTFSLNRIKFLVLDEADRLL-SG-IFDEQMRTIFGAV---PK------QKQTLLFSATMT 64 (189)
Q Consensus 4 TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll-~~-~f~~~i~~Il~~l---~~------~~Q~il~SATl~ 64 (189)
|-|-|+.=+. +.+-|..-..+|+||||.=- .. -....+.+|+..- .+ .-..|++|||+-
T Consensus 356 TDGVLLrEi~--~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLR 425 (1172)
T KOG0926|consen 356 TDGVLLREIE--NDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLR 425 (1172)
T ss_pred cchHHHHHHH--HhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEE
Confidence 6677776554 56778888999999999631 11 1344444554321 11 335689999974
No 116
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=87.65 E-value=2 Score=41.18 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=30.0
Q ss_pred ccCceeeEEeccchhhh---ccc---cHHHHHHHHhhCCCCCcEEEEeecCCch
Q psy9740 19 SLNRIKFLVLDEADRLL---SGI---FDEQMRTIFGAVPKQKQTLLFSATMTDT 66 (189)
Q Consensus 19 ~l~~l~~lVlDEaD~ll---~~~---f~~~i~~Il~~l~~~~Q~il~SATl~~~ 66 (189)
.++++..+|+||=|.-- +.+ +..++.-.... ..++.++|-|||=+-+
T Consensus 310 Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~-~~~~pvvLgSATPSLE 362 (730)
T COG1198 310 PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK-KENAPVVLGSATPSLE 362 (730)
T ss_pred chhhccEEEEeccccccccCCcCCCcCHHHHHHHHHH-HhCCCEEEecCCCCHH
Confidence 47999999999977642 122 33333333222 3588999999995444
No 117
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=85.99 E-value=1.9 Score=33.17 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=32.6
Q ss_pred ehHhhHHHHhcCCCcccCceeeEEeccchhhhccc---cHHHHHHHHhhCCCCCcEEEEeecCCchHH
Q psy9740 4 TPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGI---FDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 4 TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~---f~~~i~~Il~~l~~~~Q~il~SATl~~~v~ 68 (189)
|-+-+.+.+.+ ...+.+-+++|+||+|-+ |.. +...+...... ....+++.|||=|....
T Consensus 79 c~at~~~~~~~--p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~--g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 79 CHATYGHFLLN--PCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAES--GEAKVIFMTATPPGSED 141 (148)
T ss_dssp EHHHHHHHHHT--SSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHT--TS-EEEEEESS-TT---
T ss_pred ccHHHHHHhcC--cccccCccEEEEeccccC-CHHHHhhheeHHHhhhc--cCeeEEEEeCCCCCCCC
Confidence 34445555543 455788999999999985 332 33344443222 24568999999887653
No 118
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=85.51 E-value=1 Score=38.67 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=43.3
Q ss_pred hHhhHHHHhcCCCcccCceeeEEeccchhhhcccc--------HHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhcc
Q psy9740 5 PGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIF--------DEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKK 76 (189)
Q Consensus 5 Pgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f--------~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~ 76 (189)
..||-+++...+ -++.. .+|+||+|.+=...- ...+..+-+.+|+.+ ++.+|||-..+.+.++ ||.
T Consensus 158 ~sRl~ql~~W~g-~dfdg--vivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~AR-vvY~SATgasep~Nma--Ym~ 231 (303)
T PF13872_consen 158 RSRLDQLVDWCG-EDFDG--VIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNAR-VVYASATGASEPRNMA--YMS 231 (303)
T ss_pred cchHHHHHHHHh-cCCCc--eEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCc-EEEecccccCCCceee--eee
Confidence 345665554422 23333 899999999965432 123444556677655 8999999988888884 554
Q ss_pred c
Q psy9740 77 Q 77 (189)
Q Consensus 77 ~ 77 (189)
+
T Consensus 232 R 232 (303)
T PF13872_consen 232 R 232 (303)
T ss_pred e
Confidence 4
No 119
>KOG0949|consensus
Probab=84.64 E-value=1.3 Score=43.66 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=43.9
Q ss_pred CeeehHhhHHHHhcC--CCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCc
Q psy9740 1 VIATPGRLADHLDTC--NTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTD 65 (189)
Q Consensus 1 lV~TPgrl~~ll~~~--~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~ 65 (189)
+|+-|.-+-.++... +....+++||+|+||+|.+-...-.--.+.++..+ .+-++..|||+..
T Consensus 609 LITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L~LSATigN 673 (1330)
T KOG0949|consen 609 LITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFLVLSATIGN 673 (1330)
T ss_pred EEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCeeEEecccCC
Confidence 467788887777662 34578999999999999997554333333344333 4568999999854
No 120
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=84.06 E-value=3.7 Score=39.72 Aligned_cols=60 Identities=18% Similarity=0.391 Sum_probs=44.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHH------HH-hhCCCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRT------IF-GAVPKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~------Il-~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
+.+-+.|||||+...+..=|.+-|++ ++ ..+.....++++-|++.....++.+.+..+..
T Consensus 140 l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~Rp~~~ 206 (824)
T PF02399_consen 140 LDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCRPDEN 206 (824)
T ss_pred ccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhCCCCc
Confidence 45678999999999987644333332 22 33456788899999999999999888876644
No 121
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=83.99 E-value=1.3 Score=41.89 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=34.8
Q ss_pred CeeehHhhHHHHhcC-CCcccCce-eeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecC
Q psy9740 1 VIATPGRLADHLDTC-NTFSLNRI-KFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 1 lV~TPgrl~~ll~~~-~~~~l~~l-~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl 63 (189)
+|+|..++...+... ..+....- -++|+||||+.-..++...|. +.+| +...+.||||-
T Consensus 342 ivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~---~~~p-~a~~lGfTaTP 402 (667)
T TIGR00348 342 IITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLK---KALK-NASFFGFTGTP 402 (667)
T ss_pred EEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHH---hhCC-CCcEEEEeCCC
Confidence 467877777543320 11111111 178999999976555554443 3444 46789999995
No 122
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=83.95 E-value=1.1 Score=40.21 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=31.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCC
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMT 64 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~ 64 (189)
.+.-.++|+||+|.+.+..|......+-...+ .+.+|||.+
T Consensus 144 ~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~----~LGLTATp~ 184 (442)
T COG1061 144 GNEFGLIIFDEVHHLPAPSYRRILELLSAAYP----RLGLTATPE 184 (442)
T ss_pred ccccCEEEEEccccCCcHHHHHHHHhhhcccc----eeeeccCce
Confidence 34678999999999988877776666654443 899999965
No 123
>KOG0923|consensus
Probab=83.72 E-value=6.8 Score=37.42 Aligned_cols=60 Identities=23% Similarity=0.192 Sum_probs=37.6
Q ss_pred ehHhhHHHHhcCCCcccCceeeEEeccchhh-hccc-cHHHHHHHHhhCCCCCcEEEEeecCCch
Q psy9740 4 TPGRLADHLDTCNTFSLNRIKFLVLDEADRL-LSGI-FDEQMRTIFGAVPKQKQTLLFSATMTDT 66 (189)
Q Consensus 4 TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~l-l~~~-f~~~i~~Il~~l~~~~Q~il~SATl~~~ 66 (189)
|-|-|+.=+. ...+|.+-..+++||||.= |... ...-+..|.+. .++-..++.||||..+
T Consensus 362 TDGmLlREfL--~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~-RpdLKllIsSAT~DAe 423 (902)
T KOG0923|consen 362 TDGMLLREFL--SEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARF-RPDLKLLISSATMDAE 423 (902)
T ss_pred cchhHHHHHh--ccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhh-CCcceEEeeccccCHH
Confidence 4555554332 3467889999999999963 2211 33344444443 3567789999999653
No 124
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=83.12 E-value=6.6 Score=38.98 Aligned_cols=35 Identities=14% Similarity=0.029 Sum_probs=27.7
Q ss_pred eEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 152 YYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 152 ~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
-.++....+|..++++.+.... ....++||||+|+
T Consensus 574 d~vy~t~~eK~~Ali~~I~~~~--~~grpVLIft~Sv 608 (1025)
T PRK12900 574 DLVYKTRREKYNAIVLKVEELQ--KKGQPVLVGTASV 608 (1025)
T ss_pred CeEecCHHHHHHHHHHHHHHHh--hCCCCEEEEeCcH
Confidence 3455677789999999997764 3478999999996
No 125
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=81.95 E-value=15 Score=35.40 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=24.7
Q ss_pred EEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 153 YVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 153 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
.++....+|..++.+.+.... ...+++||||+|.
T Consensus 382 ~i~~t~~~k~~ai~~~i~~~~--~~grpvLV~t~si 415 (745)
T TIGR00963 382 LVYKTEEEKWKAVVDEIKERH--AKGQPVLVGTTSV 415 (745)
T ss_pred eEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcH
Confidence 334556678888888776554 4578999999985
No 126
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=81.72 E-value=3.2 Score=32.21 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=46.6
Q ss_pred ccCceeeEEeccchhhhcccc--HHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 19 SLNRIKFLVLDEADRLLSGIF--DEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 19 ~l~~l~~lVlDEaD~ll~~~f--~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
.....++|||||.=-.++.|+ .+++-.+++.-|.+.-+++++-..|+++.++|+..
T Consensus 92 ~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~V 149 (159)
T cd00561 92 ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLV 149 (159)
T ss_pred hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCcee
Confidence 346788999999999998884 55677888888888889999999999999887643
No 127
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=81.49 E-value=3.1 Score=32.85 Aligned_cols=55 Identities=13% Similarity=0.205 Sum_probs=46.2
Q ss_pred cCceeeEEeccchhhhcccc--HHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIF--DEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f--~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
-....+|||||+=-.++.|+ .+++-.+++.-|.+.-++++.-..|+++.++|+..
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~V 151 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLV 151 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCcee
Confidence 35678999999999999884 45677888888888899999999999999987654
No 128
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=81.41 E-value=9.8 Score=37.95 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=22.9
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGI 38 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~ 38 (189)
+|+|-+-|.+.+..... -+-+++.+|.+|.+|..+
T Consensus 185 litTs~FL~k~~e~L~~---~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 185 LITTSQFLSKRFEELSK---LKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred EEEeHHHHHhhHHHhcc---cCCCEEEEccHHHHHhcc
Confidence 46666666655554111 246789999999998643
No 129
>KOG0991|consensus
Probab=80.98 E-value=2.1 Score=36.00 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=30.6
Q ss_pred CCccc--CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEE
Q psy9740 16 NTFSL--NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLF 59 (189)
Q Consensus 16 ~~~~l--~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~ 59 (189)
+++.+ ..-+.+|+||||.|-+ |-+..+++-++...+.....+.
T Consensus 105 ~kv~lp~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFala 149 (333)
T KOG0991|consen 105 KKVTLPPGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALA 149 (333)
T ss_pred hhccCCCCceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhh
Confidence 44444 7788999999999954 4677777777776665555444
No 130
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=80.90 E-value=2.5 Score=35.61 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=30.0
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEee
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSA 61 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SA 61 (189)
..-+.+|+||+|.|-.......+..+++..+.+.++++.+.
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 45689999999998444456777888888777777666543
No 131
>PRK06893 DNA replication initiation factor; Validated
Probab=80.45 E-value=1.9 Score=35.09 Aligned_cols=47 Identities=19% Similarity=0.365 Sum_probs=33.1
Q ss_pred cCceeeEEeccchhhh-ccccHHHHHHHHhhCCC-CCcEEEEeecCCch
Q psy9740 20 LNRIKFLVLDEADRLL-SGIFDEQMRTIFGAVPK-QKQTLLFSATMTDT 66 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll-~~~f~~~i~~Il~~l~~-~~Q~il~SATl~~~ 66 (189)
+++.+.+++||+|.+. +..+...+..++..+.. +.+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 5677899999999986 33455667777766543 45677788876544
No 132
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=80.39 E-value=3.3 Score=41.66 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=41.1
Q ss_pred CeeehHhhHHHHhcC----CCcccCceeeEEeccchhhhc------c---c------cHHHHHHHHhhCCCCCcEEEEee
Q psy9740 1 VIATPGRLADHLDTC----NTFSLNRIKFLVLDEADRLLS------G---I------FDEQMRTIFGAVPKQKQTLLFSA 61 (189)
Q Consensus 1 lV~TPgrl~~ll~~~----~~~~l~~l~~lVlDEaD~ll~------~---~------f~~~i~~Il~~l~~~~Q~il~SA 61 (189)
+|||...+...+... ..+.+....++|+||||+-.. . + +....+.|+.+.. .-.+.|||
T Consensus 515 ~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTA 592 (1123)
T PRK11448 515 HVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD--AVKIGLTA 592 (1123)
T ss_pred EEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC--ccEEEEec
Confidence 478888877654321 124567888999999999531 0 1 2345677777652 45689999
Q ss_pred cCCc
Q psy9740 62 TMTD 65 (189)
Q Consensus 62 Tl~~ 65 (189)
|--.
T Consensus 593 TP~r 596 (1123)
T PRK11448 593 TPAL 596 (1123)
T ss_pred CCcc
Confidence 9643
No 133
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=80.28 E-value=7 Score=37.10 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=31.7
Q ss_pred CCcccCceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEeecCCc
Q psy9740 16 NTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFSATMTD 65 (189)
Q Consensus 16 ~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~SATl~~ 65 (189)
..+.++++.++|+||-|+. .-.=+..+..-.. .+-.+++|||==+
T Consensus 378 d~V~F~~LgLVIiDEQHRF-----GV~QR~~L~~KG~~~Ph~LvMTATPIP 423 (677)
T COG1200 378 DKVEFHNLGLVIIDEQHRF-----GVHQRLALREKGEQNPHVLVMTATPIP 423 (677)
T ss_pred cceeecceeEEEEeccccc-----cHHHHHHHHHhCCCCCcEEEEeCCCch
Confidence 5577999999999999994 3333334444344 5678999999433
No 134
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=78.10 E-value=3 Score=36.14 Aligned_cols=54 Identities=26% Similarity=0.272 Sum_probs=34.2
Q ss_pred ccCceeeEEeccchhhhccc-------cHHHHHHHHhhCCC-------CCcEEEEeecCCch-HHHHHHh
Q psy9740 19 SLNRIKFLVLDEADRLLSGI-------FDEQMRTIFGAVPK-------QKQTLLFSATMTDT-LEQVKSI 73 (189)
Q Consensus 19 ~l~~l~~lVlDEaD~ll~~~-------f~~~i~~Il~~l~~-------~~Q~il~SATl~~~-v~~l~~~ 73 (189)
......++|+|||++|.+.+ ..+++..|++. .+ ..|++-.+.....+ +.+++..
T Consensus 80 ~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~-~kv~v~f~D~~Q~i~~~e~~~~~~l~~~~~~ 148 (352)
T PF09848_consen 80 EKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR-AKVVVFFYDENQSIRPSEIGTLENLEEIAEN 148 (352)
T ss_pred cCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc-CCEEEEEEccccEeecccCCCHHHHHHHHHh
Confidence 45678899999999999842 35778888876 32 34555554443333 4444433
No 135
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=74.88 E-value=6.4 Score=31.54 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=46.2
Q ss_pred cCceeeEEeccchhhhcccc--HHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIF--DEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f--~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
-....+|||||.=..++.|+ .+++-.+++.-|...-++++.-..|+++.++|+..
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlV 169 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLV 169 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchh
Confidence 36678999999999999985 55677888888888888999999999999887654
No 136
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=74.02 E-value=6.4 Score=30.99 Aligned_cols=56 Identities=14% Similarity=0.262 Sum_probs=40.4
Q ss_pred ccCceeeEEeccchhhhcccc--HHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 19 SLNRIKFLVLDEADRLLSGIF--DEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 19 ~l~~l~~lVlDEaD~ll~~~f--~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
.-....+|||||+=..++.|+ .+++..+++.-|...-++++.-..|+++.++|+..
T Consensus 93 ~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADlV 150 (172)
T PF02572_consen 93 SSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADLV 150 (172)
T ss_dssp T-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SEE
T ss_pred hCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCee
Confidence 346788999999999999985 45577888888888899999999999999988654
No 137
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=73.15 E-value=7.4 Score=30.85 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=46.0
Q ss_pred cCceeeEEeccchhhhcccc--HHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIF--DEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f--~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
-....++|+||.=..++.|+ .+++..+++.-|.+.-++++.-..|+++.++|+..
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD~V 169 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIADQI 169 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCCee
Confidence 36678999999999999995 45577888888888899999999999999887643
No 138
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=72.71 E-value=4 Score=35.08 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=29.8
Q ss_pred cCceeeEEeccchhhhccccHHH--HHHHHhhCCCCCcEEEE
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQ--MRTIFGAVPKQKQTLLF 59 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~--i~~Il~~l~~~~Q~il~ 59 (189)
--+++++||||.|.+|..+..++ .-..++++....|+-++
T Consensus 143 ~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV 184 (302)
T PF05621_consen 143 RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIV 184 (302)
T ss_pred HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeE
Confidence 35689999999999998876554 44567777777666443
No 139
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=72.08 E-value=11 Score=30.39 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=45.2
Q ss_pred CceeeEEeccchhhhcccc--HHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 21 NRIKFLVLDEADRLLSGIF--DEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f--~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
...+++|+||.--.+..|+ .+++..+++.-|...-++++.-..|+.+.++|+.-
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 3578999999999999885 45677888888888888888888999999988654
No 140
>KOG0989|consensus
Probab=72.05 E-value=6.9 Score=33.94 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=30.4
Q ss_pred ccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 19 SLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 19 ~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
....-+.+|+||||.|-.. -+..+.+.++..++....+|..--
T Consensus 126 ~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred CCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCC
Confidence 3455589999999999644 566777777776666666665443
No 141
>KOG2170|consensus
Probab=71.69 E-value=5.7 Score=34.37 Aligned_cols=56 Identities=11% Similarity=0.236 Sum_probs=41.0
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCC-------CCcEEEEeecCCchHHHHHHhhccc
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-------QKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-------~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
..=..+|+||+|+|- .|..+.+.-.+++.|. +.-.|+.|-+-.+++.+.+...++.
T Consensus 177 C~rslFIFDE~DKmp-~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~ 239 (344)
T KOG2170|consen 177 CQRSLFIFDEVDKLP-PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENARN 239 (344)
T ss_pred cCCceEEechhhhcC-HhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHHc
Confidence 344689999999984 4467777777776652 3345788998888888887777665
No 142
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=71.16 E-value=4.8 Score=31.11 Aligned_cols=37 Identities=16% Similarity=0.378 Sum_probs=31.8
Q ss_pred eeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEe
Q psy9740 24 KFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFS 60 (189)
Q Consensus 24 ~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~S 60 (189)
.++++||-|.=|...++..+-.++..+.+ +.|+++.|
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitT 296 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITT 296 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeC
Confidence 78999999999999988888888877765 89998764
No 143
>PLN03025 replication factor C subunit; Provisional
Probab=70.79 E-value=7 Score=33.28 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=28.3
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCch
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDT 66 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~ 66 (189)
..-+.+++||||.|-.. -+..+.++++..++...++ +.++.+..
T Consensus 98 ~~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~i-l~~n~~~~ 141 (319)
T PLN03025 98 GRHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFA-LACNTSSK 141 (319)
T ss_pred CCeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEE-EEeCCccc
Confidence 45789999999998543 3566666776655555444 44544433
No 144
>KOG0990|consensus
Probab=70.43 E-value=4.8 Score=35.07 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=27.6
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEE
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLF 59 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~ 59 (189)
..+++|+||||.|= ..-+..+++++.....+..+++.
T Consensus 131 ~fKlvILDEADaMT-~~AQnALRRviek~t~n~rF~ii 167 (360)
T KOG0990|consen 131 AFKLVILDEADAMT-RDAQNALRRVIEKYTANTRFATI 167 (360)
T ss_pred ceeEEEecchhHhh-HHHHHHHHHHHHHhccceEEEEe
Confidence 68999999999994 33577788888877766555543
No 145
>PF13173 AAA_14: AAA domain
Probab=69.76 E-value=6.8 Score=28.51 Aligned_cols=38 Identities=13% Similarity=0.301 Sum_probs=28.0
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
.-.++++||++.+ .++...++.+...- .+.++++++..
T Consensus 61 ~~~~i~iDEiq~~--~~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYL--PDWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhh--ccHHHHHHHHHHhc-cCceEEEEccc
Confidence 5578999999998 45788888888755 45666665443
No 146
>PRK05642 DNA replication initiation factor; Validated
Probab=68.70 E-value=5.2 Score=32.62 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=31.8
Q ss_pred cCceeeEEeccchhhhc-cccHHHHHHHHhhCCC-CCcEEEEeecCCch
Q psy9740 20 LNRIKFLVLDEADRLLS-GIFDEQMRTIFGAVPK-QKQTLLFSATMTDT 66 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~-~~f~~~i~~Il~~l~~-~~Q~il~SATl~~~ 66 (189)
+.++.+||+|++|.+-. ..+.+.+-.+++.+.. ++++++.|-+-|++
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~ 143 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRE 143 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHH
Confidence 55667999999998753 3467778888877764 45555554444543
No 147
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=66.79 E-value=6.3 Score=31.24 Aligned_cols=43 Identities=14% Similarity=0.339 Sum_probs=26.8
Q ss_pred CceeeEEeccchhhhcc-ccHHHHHHHHhhCCCCCcEEEEeecC
Q psy9740 21 NRIKFLVLDEADRLLSG-IFDEQMRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~-~f~~~i~~Il~~l~~~~Q~il~SATl 63 (189)
....++|+||+|.+-.. +..+.+..++..+......++++++.
T Consensus 89 ~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 89 EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 44568999999987543 34667777776654322244555553
No 148
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=66.61 E-value=5.9 Score=32.02 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=37.3
Q ss_pred cCceeeEEeccchhhhcc-ccHHHHHHHHhhCC-CCCcEEEEeecCCchHH
Q psy9740 20 LNRIKFLVLDEADRLLSG-IFDEQMRTIFGAVP-KQKQTLLFSATMTDTLE 68 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~-~f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~ 68 (189)
+.....+++|..|.+-.. ..++.+-.+++.+. .++|+++.|...|.++.
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELS 145 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccc
Confidence 678999999999998754 36777777777764 56788888878777754
No 149
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=65.52 E-value=14 Score=33.68 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=32.3
Q ss_pred ccCceeeE-Eeccchhhhccc---cHHHHHHHHhhCCC-CCcEEEEee
Q psy9740 19 SLNRIKFL-VLDEADRLLSGI---FDEQMRTIFGAVPK-QKQTLLFSA 61 (189)
Q Consensus 19 ~l~~l~~l-VlDEaD~ll~~~---f~~~i~~Il~~l~~-~~Q~il~SA 61 (189)
++.+.++| .+||||-||+.. +.+.|++|.+.+.+ ..=+.++|-
T Consensus 251 D~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ 298 (502)
T PF05872_consen 251 DLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQ 298 (502)
T ss_pred CCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeC
Confidence 57778886 599999999653 89999999999874 444444443
No 150
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=65.31 E-value=2.9 Score=39.64 Aligned_cols=16 Identities=44% Similarity=0.800 Sum_probs=14.4
Q ss_pred cCceeeEEeccchhhh
Q psy9740 20 LNRIKFLVLDEADRLL 35 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll 35 (189)
.+.+.|.|+||||-+|
T Consensus 240 ~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 240 LRGLHFAIVDEADSVL 255 (656)
T ss_pred ccccceeEeeccccee
Confidence 5778999999999997
No 151
>PF15586 Imm47: Immunity protein 47
Probab=65.08 E-value=6.2 Score=29.05 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=28.7
Q ss_pred eeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhC
Q psy9740 2 IATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAV 50 (189)
Q Consensus 2 V~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l 50 (189)
||||..|.++..+ +.+- -.=.+||++|.|-= .-...|+++++.+
T Consensus 49 VcTP~wL~~~~~~-~~~~-~gr~~LIv~~yd~~---~I~~~i~~~i~~c 92 (116)
T PF15586_consen 49 VCTPKWLSKNCWK-PGIL-WGRHMLIVEEYDYD---EIKKTIERIIESC 92 (116)
T ss_pred EEcHHHHHHhhcC-Ccce-eccceEEEecCCHH---HHHHHHHHHHHHc
Confidence 8999999998876 4432 22368999997631 1244455666554
No 152
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=64.93 E-value=10 Score=37.03 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=30.0
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHH
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQ 69 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~ 69 (189)
++-+.+||||||.|=.. -.+.+.++++..+...-+||.+ |-++.+..
T Consensus 119 ~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t-t~~~kLl~ 165 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT-TEPDKVIG 165 (824)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe-CChhhhhH
Confidence 55689999999999543 4455556666655555555543 65555443
No 153
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=64.84 E-value=14 Score=26.15 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.8
Q ss_pred eeeEEeccchhhhccc
Q psy9740 23 IKFLVLDEADRLLSGI 38 (189)
Q Consensus 23 l~~lVlDEaD~ll~~~ 38 (189)
-..+++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 5799999999998765
No 154
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=64.74 E-value=6.9 Score=30.57 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=32.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEee
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFSA 61 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~SA 61 (189)
+.+.+++++||.+.-++......+...+..+.+ +.++++.|-
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 356789999999999999888888777766543 366666654
No 155
>KOG0385|consensus
Probab=64.34 E-value=10 Score=36.80 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=33.4
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHH---HHhhccc
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQV---KSITKKQ 77 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l---~~~~l~~ 77 (189)
-+=+|+|+||||++=.. ..-+..+++.+......+++..-+..++.+| ...++++
T Consensus 288 ~~W~ylvIDEaHRiKN~--~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPd 345 (971)
T KOG0385|consen 288 FNWRYLVIDEAHRIKNE--KSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPD 345 (971)
T ss_pred CCceEEEechhhhhcch--hhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchh
Confidence 34589999999999543 3344566666654444444443366566664 4555555
No 156
>PRK10869 recombination and repair protein; Provisional
Probab=64.30 E-value=7.1 Score=36.23 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=36.2
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHH
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l 70 (189)
+..++|+||.|.=++......+..++..+.+..|+++. |-.+++..+
T Consensus 452 ~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~i--TH~~~~~~~ 498 (553)
T PRK10869 452 ETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCV--THLPQVAGC 498 (553)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEE--ecCHHHHHh
Confidence 56899999999999999999999999888777776554 433444433
No 157
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=64.26 E-value=11 Score=27.53 Aligned_cols=46 Identities=24% Similarity=0.432 Sum_probs=30.7
Q ss_pred cCceeeEEeccchhhhcccc----------HHHHHHHHhhCCCCCcEEEEeecCCc
Q psy9740 20 LNRIKFLVLDEADRLLSGIF----------DEQMRTIFGAVPKQKQTLLFSATMTD 65 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f----------~~~i~~Il~~l~~~~Q~il~SATl~~ 65 (189)
-.+..++|+||+..+++... .+.+..+.....+..-++++....+.
T Consensus 83 ~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 83 RGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 35678999999999875532 45566666666555556666665544
No 158
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=63.94 E-value=27 Score=35.33 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=43.2
Q ss_pred CCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 16 NTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 16 ~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
+.+.++++..+|+||=++.- ...-+. ++.+..+.-++-+|||==+....++-..+++
T Consensus 710 kdv~FkdLGLlIIDEEqRFG-Vk~KEk----LK~Lr~~VDvLTLSATPIPRTL~Msm~GiRd 766 (1139)
T COG1197 710 KDVKFKDLGLLIIDEEQRFG-VKHKEK----LKELRANVDVLTLSATPIPRTLNMSLSGIRD 766 (1139)
T ss_pred CCcEEecCCeEEEechhhcC-ccHHHH----HHHHhccCcEEEeeCCCCcchHHHHHhcchh
Confidence 77889999999999998842 223343 4444567778889999777778888888887
No 159
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=63.84 E-value=7.1 Score=36.17 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=33.4
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEee
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSA 61 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SA 61 (189)
+.+++|+||.|.-++......+..++..+.+..|+++.|=
T Consensus 462 ~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH 501 (563)
T TIGR00634 462 AVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTH 501 (563)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 4689999999999999989989988888877777766543
No 160
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=63.22 E-value=12 Score=29.09 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=26.1
Q ss_pred eeEEeccchhhh---c--cccHHHHHHHHhhCCC-CCcEEEEeecC
Q psy9740 24 KFLVLDEADRLL---S--GIFDEQMRTIFGAVPK-QKQTLLFSATM 63 (189)
Q Consensus 24 ~~lVlDEaD~ll---~--~~f~~~i~~Il~~l~~-~~Q~il~SATl 63 (189)
-.+|+||+|.+. + .++...+..++..... ....++++++-
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 578999999999 2 3477778888777543 33445555654
No 161
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.21 E-value=18 Score=32.17 Aligned_cols=57 Identities=11% Similarity=0.178 Sum_probs=38.5
Q ss_pred cCceeeEEeccchhhhcc-ccHHHHHHHHhhCCCCCcE-EEEeecCCc-hHHHHHHhhcc
Q psy9740 20 LNRIKFLVLDEADRLLSG-IFDEQMRTIFGAVPKQKQT-LLFSATMTD-TLEQVKSITKK 76 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~-~f~~~i~~Il~~l~~~~Q~-il~SATl~~-~v~~l~~~~l~ 76 (189)
+++..++++|+|.++... .....+..++.......++ +..|||... ++.+..+.+-.
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~ 311 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSP 311 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcC
Confidence 567899999999998632 2445666677666544344 667999854 46666666643
No 162
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=63.04 E-value=24 Score=29.40 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=26.5
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
..-+.+++||+|.|-.. ....+..+++..+....+++.+
T Consensus 101 ~~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 101 APFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CCceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 34679999999998543 3456666777666666666544
No 163
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=62.68 E-value=9.5 Score=34.43 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=36.8
Q ss_pred cCceeeEEeccchhhhccc-cHHHHHHHHhhCC-CCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGI-FDEQMRTIFGAVP-KQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~-f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~~l~~~ 73 (189)
++++..|++||+|.+-... .++.+..+++.+. .+.|+++.|-+-|.++..+...
T Consensus 200 ~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~r 255 (445)
T PRK12422 200 YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEER 255 (445)
T ss_pred cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHH
Confidence 5678899999999986433 4566666666543 4678888777667776544333
No 164
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=62.17 E-value=23 Score=35.55 Aligned_cols=46 Identities=17% Similarity=0.396 Sum_probs=29.1
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecC-CchHHHH
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATM-TDTLEQV 70 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl-~~~v~~l 70 (189)
+-.++|+||||++=.. ...+.+.+..+... -.+++|+|- .....++
T Consensus 291 ~W~~VIvDEAHrIKN~--~Sklskalr~L~a~-~RLLLTGTPlqNnl~EL 337 (1033)
T PLN03142 291 SWRYIIIDEAHRIKNE--NSLLSKTMRLFSTN-YRLLITGTPLQNNLHEL 337 (1033)
T ss_pred CCCEEEEcCccccCCH--HHHHHHHHHHhhcC-cEEEEecCCCCCCHHHH
Confidence 3569999999998543 33455556665433 347889993 4445444
No 165
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=62.13 E-value=11 Score=29.93 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=31.7
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEE
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLF 59 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~ 59 (189)
++.+++++||...-++......+..++..+.++.++++.
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIii 172 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVI 172 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEE
Confidence 456899999999999999889998888887666555554
No 166
>PRK07413 hypothetical protein; Validated
Probab=61.96 E-value=12 Score=33.32 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=45.2
Q ss_pred CceeeEEeccchhhhccccHH--HHHHHHhhCCCCCcEEEEeec-CCchHHHHHHhh
Q psy9740 21 NRIKFLVLDEADRLLSGIFDE--QMRTIFGAVPKQKQTLLFSAT-MTDTLEQVKSIT 74 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~--~i~~Il~~l~~~~Q~il~SAT-l~~~v~~l~~~~ 74 (189)
....+|||||+--.++.|+.+ ++-.+++.-|.+.-++++.-. .|+++.++|+..
T Consensus 304 g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~ADlV 360 (382)
T PRK07413 304 GLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLASVH 360 (382)
T ss_pred CCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhCchh
Confidence 556799999999999999655 688888888888888888887 889999887654
No 167
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=61.74 E-value=10 Score=31.96 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=27.0
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
..-+.+|+||+|.|-+ +....+..++...+....+++++
T Consensus 124 ~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRE-DAQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCH-HHHHHHHHHHHhccCCCeEEEEe
Confidence 4457899999998743 34566777777766666665543
No 168
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=61.58 E-value=28 Score=33.01 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 160 VKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 160 ~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
.+...|+..|+... ....++||||+|+
T Consensus 430 ~q~~~L~~~L~~~~--~~g~~viIf~~t~ 456 (652)
T PRK05298 430 GQVDDLLSEIRKRV--AKGERVLVTTLTK 456 (652)
T ss_pred ccHHHHHHHHHHHH--hCCCEEEEEeCCH
Confidence 45666777776543 3467999999986
No 169
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=61.42 E-value=33 Score=33.89 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=26.2
Q ss_pred EEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 153 YVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 153 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
.++.....|..++++-++... ...+++||||+|.
T Consensus 426 ~iy~t~~~K~~Aii~ei~~~~--~~GrpVLV~t~sv 459 (908)
T PRK13107 426 LVYLTADEKYQAIIKDIKDCR--ERGQPVLVGTVSI 459 (908)
T ss_pred cEEeCHHHHHHHHHHHHHHHH--HcCCCEEEEeCcH
Confidence 445566788888888887765 4578999999985
No 170
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=60.97 E-value=7.9 Score=34.09 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=32.3
Q ss_pred cCceeeEEeccchhhhccc-cHHHHHHHHhhCC-CCCcEEEEeecCCchHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGI-FDEQMRTIFGAVP-KQKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~-f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~~l 70 (189)
+.++.+|+|||+|.+.... ..+.+-.++..+. .++|+++.|..-|..+..+
T Consensus 197 ~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l 249 (405)
T TIGR00362 197 YRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGL 249 (405)
T ss_pred HHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhh
Confidence 4567899999999886542 3445556665543 4677776655555555444
No 171
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=60.62 E-value=13 Score=26.17 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=18.7
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhC
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAV 50 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l 50 (189)
......+++||+|.+- ......+..++...
T Consensus 82 ~~~~~~lilDe~~~~~-~~~~~~~~~~i~~~ 111 (151)
T cd00009 82 KAKPGVLFIDEIDSLS-RGAQNALLRVLETL 111 (151)
T ss_pred cCCCeEEEEeChhhhh-HHHHHHHHHHHHhc
Confidence 4556899999999982 22334444444444
No 172
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=60.18 E-value=9.6 Score=34.16 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=32.6
Q ss_pred cCceeeEEeccchhhhccc-cHHHHHHHHhhCC-CCCcEEEEeecCCchHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGI-FDEQMRTIFGAVP-KQKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~-f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~~l 70 (189)
++++..|+|||+|.+-... ..+.+-.++..+. .++|+++.|..-|..+..+
T Consensus 209 ~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l 261 (450)
T PRK00149 209 YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGL 261 (450)
T ss_pred HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 4567899999999985432 3455666665543 4567766665555555433
No 173
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=59.96 E-value=8 Score=30.55 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=40.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||.-.=||......+..++..+.+...+++++..-+..+..++..
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~ 206 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHR 206 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 467799999999999999999999998887754445677766655666655543
No 174
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=59.79 E-value=19 Score=27.60 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=28.1
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
+.-+.+|+||||.|-.. -++.+-++++.-|++.-++|. ++-+..+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~-t~~~~~i 145 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILI-TNNPSKI 145 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEE-ES-GGGS
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEE-ECChHHC
Confidence 57889999999998433 555566666665555555555 4444443
No 175
>PRK10536 hypothetical protein; Provisional
Probab=58.68 E-value=14 Score=31.20 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=29.1
Q ss_pred eeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEee
Q psy9740 24 KFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSA 61 (189)
Q Consensus 24 ~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SA 61 (189)
.++|+|||..+ -.++++.++..++.+..+++..-
T Consensus 178 ~~vIvDEaqn~----~~~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 178 AVVILDEAQNV----TAAQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred CEEEEechhcC----CHHHHHHHHhhcCCCCEEEEeCC
Confidence 79999999987 44889999999999998888754
No 176
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=58.26 E-value=10 Score=30.06 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=41.1
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||...-||......+..++..+.++ .+++++..-+..+.+++..
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~ 201 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKG-RSIILTTHSMDEAEALCDR 201 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhcCE
Confidence 4678999999999999999999999988887665 5677766655556655543
No 177
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=58.22 E-value=13 Score=29.75 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=34.6
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
+.+.+++||...=+|......+..++..+.+..+++++|
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs 187 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVIS 187 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 458999999999999999999999999887777888887
No 178
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=57.59 E-value=20 Score=28.36 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=26.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEeec
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFSAT 62 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~SAT 62 (189)
+.+-..+|+|||-.+ -...+..++..++. +.+++++.=.
T Consensus 91 ~~~~~vliVDEasmv----~~~~~~~ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 91 LPKKDVLIVDEASMV----DSRQLARLLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp -TSTSEEEESSGGG-----BHHHHHHHHHHS-T-T-EEEEEE-T
T ss_pred CCcccEEEEeccccc----CHHHHHHHHHHHHhcCCEEEEECCc
Confidence 556679999999987 45678888888876 7777777654
No 179
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=57.39 E-value=12 Score=37.81 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=43.0
Q ss_pred ccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhc
Q psy9740 19 SLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITK 75 (189)
Q Consensus 19 ~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l 75 (189)
.+++.-|.||||+|.=||.-...-+..++..+.++.|+|+.| .-+.+-+.+..++
T Consensus 1085 ~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIT--hr~~~m~~ad~l~ 1139 (1163)
T COG1196 1085 KYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVIT--HRKGTMEAADRLV 1139 (1163)
T ss_pred hhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEE--cChHHHHHHHHHe
Confidence 356777999999999999998999999998888999999984 4444444444443
No 180
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=57.35 E-value=14 Score=30.23 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=39.3
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
.+.+++++||-..-++......+..++..+.++.++++.|-. .++.+.++.
T Consensus 187 ~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~--~~~~~~~d~ 237 (251)
T cd03273 187 KPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLK--EGMFNNANV 237 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECC--HHHHHhCCE
Confidence 456899999999999999889998888877667777777765 444444433
No 181
>KOG0964|consensus
Probab=57.06 E-value=8.6 Score=38.04 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=48.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
+.+--|-++||.|.=||..|+..+..+++.+..+.|.|. .|+-+++...|..|..-
T Consensus 1117 cDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~--TTFRpEll~vAdKfygV 1172 (1200)
T KOG0964|consen 1117 CDPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFIT--TTFRPELLSVADKFYGV 1172 (1200)
T ss_pred cCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEe--ecccHHHHHHHHhhhce
Confidence 344457799999999999999999999999999988776 48889999999888765
No 182
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.66 E-value=16 Score=33.64 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=26.3
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCC
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMT 64 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~ 64 (189)
++-+.++|||||.|-... .+.+.++++.-|+...+++.+ |-+
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat-td~ 159 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT-TDH 159 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE-CCh
Confidence 345799999999875443 445555666656665555543 433
No 183
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=56.53 E-value=6 Score=33.31 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=21.9
Q ss_pred eeehHhhH-HHHhcC---CC--cccCceeeEEeccchhhh
Q psy9740 2 IATPGRLA-DHLDTC---NT--FSLNRIKFLVLDEADRLL 35 (189)
Q Consensus 2 V~TPgrl~-~ll~~~---~~--~~l~~l~~lVlDEaD~ll 35 (189)
.||.+.+. |++... .. ...+...++++||||.||
T Consensus 171 Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 171 YGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 35666654 444431 11 125889999999999998
No 184
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=56.46 E-value=9.3 Score=28.66 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=37.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l 70 (189)
..+.+++++||...=+|......+..++..+.+..++++++..-...+..+
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 345789999999999999888888888877655445666655555555544
No 185
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=56.40 E-value=12 Score=37.16 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=36.3
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
.+..++++||.|.-||......+..++..+.++.|++++|--
T Consensus 1095 ~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~ 1136 (1164)
T TIGR02169 1095 KPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLR 1136 (1164)
T ss_pred CCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 567899999999999999889899898888778898887654
No 186
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=56.18 E-value=8.7 Score=36.39 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=21.8
Q ss_pred eeehHhhHHHHhcCCCcccCceeeEEeccchhhhc
Q psy9740 2 IATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS 36 (189)
Q Consensus 2 V~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~ 36 (189)
|+...-|+..+.. ..--+....++|+||||.+-+
T Consensus 187 ItNHalL~~~~~~-~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 187 FCTHAMLGLAFRD-KWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred EECHHHHHHHhhh-hcCCCCCCCEEEEeCCcchHH
Confidence 4445445544433 212456679999999999975
No 187
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=55.97 E-value=15 Score=33.09 Aligned_cols=52 Identities=15% Similarity=0.320 Sum_probs=34.1
Q ss_pred ceeeEEeccchhhhccc-cHHHHHHHHhhCC-CCCcEEEEeecCCchHHHHHHh
Q psy9740 22 RIKFLVLDEADRLLSGI-FDEQMRTIFGAVP-KQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~-f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~~l~~~ 73 (189)
++..+++||+|.+.+.. ..+.+..++..+. .+.|+++.|-.-|.++..+...
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHH
Confidence 57899999999987543 4455656665544 3567777666566666555443
No 188
>PRK08084 DNA replication initiation factor; Provisional
Probab=55.37 E-value=11 Score=30.72 Aligned_cols=46 Identities=4% Similarity=0.259 Sum_probs=29.0
Q ss_pred CceeeEEeccchhhhc-cccHHHHHHHHhhCCC-C-CcEEEEeecCCch
Q psy9740 21 NRIKFLVLDEADRLLS-GIFDEQMRTIFGAVPK-Q-KQTLLFSATMTDT 66 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~-~~f~~~i~~Il~~l~~-~-~Q~il~SATl~~~ 66 (189)
.+..+|++||+|.+-. ..+++.+..++..+.. + .++++.|..-|.+
T Consensus 96 ~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~ 144 (235)
T PRK08084 96 EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQ 144 (235)
T ss_pred hhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHH
Confidence 3456899999999853 4467777777766543 3 3555544433333
No 189
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=55.15 E-value=14 Score=29.37 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=33.8
Q ss_pred cCceeeEEeccchhhhccccHH-HHHHHHhhCCC--CCcEEEEee
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDE-QMRTIFGAVPK--QKQTLLFSA 61 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~-~i~~Il~~l~~--~~Q~il~SA 61 (189)
..+.+.+++||...-||..... .+..++..+.+ ..++++.|-
T Consensus 137 ~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH 181 (204)
T cd03240 137 GSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITH 181 (204)
T ss_pred ccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 4677999999999999998888 89888888765 456666554
No 190
>PRK07413 hypothetical protein; Validated
Probab=54.51 E-value=23 Score=31.48 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=45.3
Q ss_pred cCceeeEEeccchhhhcccc--HHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIF--DEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f--~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
-...++|||||.--.++.|+ .+++-.+++.-|...-++++.-..|+++.++|+.
T Consensus 123 sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADl 178 (382)
T PRK07413 123 SGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADL 178 (382)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCe
Confidence 35678999999999999985 4557778888888889999999999999988753
No 191
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=54.24 E-value=9.8 Score=29.92 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=39.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||.-.=||......+..++..+.+...+++++..-+..+.+++.
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d 194 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCD 194 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 35678999999999999999999999888775444566666655555555544
No 192
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=54.09 E-value=59 Score=30.94 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=19.8
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 159 DVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 159 ~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
..+...|++-++... ....++||||+|++
T Consensus 425 ~~qi~~Ll~eI~~~~--~~g~~vLIf~~tk~ 453 (655)
T TIGR00631 425 DGQVDDLLSEIRQRV--ARNERVLVTTLTKK 453 (655)
T ss_pred cchHHHHHHHHHHHH--cCCCEEEEEECCHH
Confidence 345666676666543 44679999999863
No 193
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=54.09 E-value=16 Score=31.84 Aligned_cols=44 Identities=14% Similarity=0.220 Sum_probs=27.4
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCch
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDT 66 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~ 66 (189)
+.-+.+||||||.|= .+-.+.+-++++.-|++.-++++| +-|..
T Consensus 140 g~~rVviIDeAd~l~-~~aanaLLk~LEEpp~~~~fiLit-~~~~~ 183 (351)
T PRK09112 140 GNWRIVIIDPADDMN-RNAANAILKTLEEPPARALFILIS-HSSGR 183 (351)
T ss_pred CCceEEEEEchhhcC-HHHHHHHHHHHhcCCCCceEEEEE-CChhh
Confidence 456899999999994 334455666666645555555554 44443
No 194
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=53.72 E-value=12 Score=29.46 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=39.7
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.-+|......+..++..+.+...+++++..-+..+.+++..
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~ 197 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDR 197 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhE
Confidence 466799999999999999989999888887654334666655555555555543
No 195
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=53.63 E-value=17 Score=35.33 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=26.0
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
.+-+++||||+|.|-... ++.+-++++.-+++.. +++.+|-+..+
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~-FILaTtd~~KI 162 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVK-FILATTDPQKI 162 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeE-EEEEECChhhc
Confidence 345889999999885443 3444445554444443 44445544444
No 196
>PRK08727 hypothetical protein; Validated
Probab=53.62 E-value=18 Score=29.33 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=29.4
Q ss_pred cCceeeEEeccchhhhcc-ccHHHHHHHHhhCC-CCCcEEEEeecCCchH
Q psy9740 20 LNRIKFLVLDEADRLLSG-IFDEQMRTIFGAVP-KQKQTLLFSATMTDTL 67 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~-~f~~~i~~Il~~l~-~~~Q~il~SATl~~~v 67 (189)
+.+...||+||+|.+... .....+-.++..+. +..++++.|-.-|.+.
T Consensus 91 l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 91 LEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred HhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 566779999999988643 23444555555543 2445666655555554
No 197
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=53.49 E-value=13 Score=33.51 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=34.3
Q ss_pred cCceeeEEeccchhhhcc-ccHHHHHHHHhhCC-CCCcEEEEeecCCchHH
Q psy9740 20 LNRIKFLVLDEADRLLSG-IFDEQMRTIFGAVP-KQKQTLLFSATMTDTLE 68 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~-~f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~ 68 (189)
++++..||+||++.+-.. ...+.+..++..+. .+.|++++|-..|....
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~ 254 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLN 254 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHh
Confidence 467889999999987532 35667777776654 45677777766665553
No 198
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=53.44 E-value=19 Score=33.79 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=30.4
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
-+.++||+|||-.+ -.+.|..|++.++...+++++.=.
T Consensus 258 l~~dvlIiDEaSMv----d~~l~~~ll~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 258 LPLDVLVVDEASMV----DLPLMAKLLKALPPNTKLILLGDK 295 (586)
T ss_pred CcccEEEEcccccC----CHHHHHHHHHhcCCCCEEEEECCh
Confidence 45789999999866 345788899999999998887544
No 199
>PRK04195 replication factor C large subunit; Provisional
Probab=53.31 E-value=13 Score=33.74 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=18.6
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCC
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVP 51 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~ 51 (189)
.-+.+||||||.|...+-...+..+++.+.
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~ 127 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIK 127 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHH
Confidence 567999999999975332233344444443
No 200
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=53.07 E-value=13 Score=30.12 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=40.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||.-.-||......+..++..+.+...+++++..-...+.+++..
T Consensus 160 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~ 213 (250)
T PRK11264 160 AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADR 213 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 356789999999999999999999888887754445677766555555555543
No 201
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=53.01 E-value=18 Score=29.55 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=32.6
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEee
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFSA 61 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~SA 61 (189)
+..+++++||...-|+......+..++..+.+ +.++++.|=
T Consensus 176 ~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH 217 (247)
T cd03275 176 QPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISL 217 (247)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEEC
Confidence 34689999999999999989988888888765 556666553
No 202
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=52.97 E-value=17 Score=34.94 Aligned_cols=44 Identities=18% Similarity=0.377 Sum_probs=32.5
Q ss_pred eehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhC
Q psy9740 3 ATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAV 50 (189)
Q Consensus 3 ~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l 50 (189)
+-|||+.+-++.-+..+. .++|||.|.|-..-..+.-..+++-+
T Consensus 402 amPGrIiQ~mkka~~~NP----v~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 402 AMPGKIIQGMKKAGVKNP----VFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred cCChHHHHHHHHhCCcCC----eEEeechhhccCCCCCChHHHHHhhc
Confidence 469999998877333332 67899999998776666667777666
No 203
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=52.94 E-value=23 Score=28.64 Aligned_cols=35 Identities=20% Similarity=0.459 Sum_probs=25.2
Q ss_pred eeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 24 KFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 24 ~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
.++|+|||-.+ -.++++.|+..+.++++++++.-.
T Consensus 121 ~~iIvDEaQN~----t~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 121 AFIIVDEAQNL----TPEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp EEEEE-SGGG------HHHHHHHHTTB-TT-EEEEEE--
T ss_pred eEEEEecccCC----CHHHHHHHHcccCCCcEEEEecCc
Confidence 79999999887 677899999999999999888654
No 204
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=52.91 E-value=11 Score=35.05 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=39.7
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhc
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITK 75 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l 75 (189)
....+|+||+|.=+...-...|-.-+..+.+..|+++.| --++|-.++...+
T Consensus 453 ~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VT--HlPQVAa~ad~H~ 504 (557)
T COG0497 453 DTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVT--HLPQVAAMADTHF 504 (557)
T ss_pred CCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEe--cHHHHHhhhcceE
Confidence 355899999999877777788888899999999999874 3355665554443
No 205
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=52.48 E-value=16 Score=29.13 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=27.9
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCc-EEEEeecCCc
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQ-TLLFSATMTD 65 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q-~il~SATl~~ 65 (189)
.....+++||+|.+ +..-...+..++........ +++++++.++
T Consensus 89 ~~~~~liiDdi~~l-~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 89 PEAELYAVDDVERL-DDAQQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred ccCCEEEEeChhhc-CchHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 34578999999986 33345556666655544443 4677777654
No 206
>KOG4150|consensus
Probab=52.30 E-value=30 Score=32.78 Aligned_cols=56 Identities=7% Similarity=-0.021 Sum_probs=39.3
Q ss_pred cCceeeEEeccchhhhcc---ccHHHHHHHHhhCC-----CCCcEEEEeecCCchHHHHHHhhc
Q psy9740 20 LNRIKFLVLDEADRLLSG---IFDEQMRTIFGAVP-----KQKQTLLFSATMTDTLEQVKSITK 75 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~---~f~~~i~~Il~~l~-----~~~Q~il~SATl~~~v~~l~~~~l 75 (189)
+-...+++.||.+..+-. --..+|++++..+. .+.|++=+|||+.+.++-+...+-
T Consensus 410 ~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~ 473 (1034)
T KOG4150|consen 410 VFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELAN 473 (1034)
T ss_pred HHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcC
Confidence 344667889999887632 24556777776654 478999999999998876655443
No 207
>PRK14974 cell division protein FtsY; Provisional
Probab=51.98 E-value=24 Score=30.68 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=44.3
Q ss_pred CceeeEEeccchhhh-ccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhcc
Q psy9740 21 NRIKFLVLDEADRLL-SGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKK 76 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll-~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~ 76 (189)
.+..++++|.|-++- +.++.++++.+...+.+..-++..|||...+..+.++.+..
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~ 277 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNE 277 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHh
Confidence 446799999999886 55688899999888777777788899988777777776654
No 208
>KOG2004|consensus
Probab=51.86 E-value=20 Score=34.68 Aligned_cols=45 Identities=24% Similarity=0.443 Sum_probs=32.0
Q ss_pred eehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCC
Q psy9740 3 ATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVP 51 (189)
Q Consensus 3 ~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~ 51 (189)
+-|||+.+.++..+.-+ -.+.|||+|++-.....+.-..+++.+-
T Consensus 490 AMPGkiIq~LK~v~t~N----PliLiDEvDKlG~g~qGDPasALLElLD 534 (906)
T KOG2004|consen 490 AMPGKIIQCLKKVKTEN----PLILIDEVDKLGSGHQGDPASALLELLD 534 (906)
T ss_pred cCChHHHHHHHhhCCCC----ceEEeehhhhhCCCCCCChHHHHHHhcC
Confidence 47999999998743333 2567999999984445556667776663
No 209
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.86 E-value=17 Score=34.76 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=25.5
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
++-+.+||||+|.|-...+ +.+-++++.-|++..+||. +|-+..+
T Consensus 123 gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILa-Ttep~kL 167 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILA-TTDPQKI 167 (700)
T ss_pred CCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEE-eCChHhh
Confidence 4567999999998854333 3333344443445554544 4544443
No 210
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=51.81 E-value=32 Score=28.30 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=26.3
Q ss_pred eeEEeccchhhhccc---c-HHHHHHHHhhCCCC-CcEEEEeecCCchHH
Q psy9740 24 KFLVLDEADRLLSGI---F-DEQMRTIFGAVPKQ-KQTLLFSATMTDTLE 68 (189)
Q Consensus 24 ~~lVlDEaD~ll~~~---f-~~~i~~Il~~l~~~-~Q~il~SATl~~~v~ 68 (189)
..+++||||.|...+ | .+.+..++..+... ..+++.-|+.+.+..
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~ 156 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMD 156 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhH
Confidence 489999999987422 2 34566677666532 223333345555543
No 211
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=51.73 E-value=17 Score=35.92 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=37.8
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
.+..++++||.+.-|+......+..++..+.+..|+++.|-- .+....+...
T Consensus 1110 ~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~--~~~~~~~d~~ 1161 (1179)
T TIGR02168 1110 KPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHN--KGTMEVADQL 1161 (1179)
T ss_pred CCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcC--hhHHHHhhhH
Confidence 566899999999999998888898888888767776554433 3344444444
No 212
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=50.60 E-value=13 Score=29.21 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=39.7
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||.-.=||......+..++..+.+.-.+++++..-+..+..++.
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d 202 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELAD 202 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 46778999999999999999999988887765434567776655555555543
No 213
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=50.50 E-value=53 Score=28.87 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=29.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEeecCCch
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFSATMTDT 66 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~SATl~~~ 66 (189)
....=.+|+||+|.|++..- +-+..|+..-.. ..++.+..-+-..+
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-EVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred cCCeEEEEEcchhhhccccc-hHHHHHHhhccccceeEEEEEEeccHH
Confidence 45566889999999998755 666677655433 34454444443333
No 214
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=50.33 E-value=22 Score=30.85 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=18.3
Q ss_pred eeeEEeccchhhhccccHHHHHHHHhhC
Q psy9740 23 IKFLVLDEADRLLSGIFDEQMRTIFGAV 50 (189)
Q Consensus 23 l~~lVlDEaD~ll~~~f~~~i~~Il~~l 50 (189)
.-.+||||+|.+....-.+.+..+++.+
T Consensus 139 ~~viviDE~d~l~~~~~~~~l~~l~~~~ 166 (394)
T PRK00411 139 VLIVALDDINYLFEKEGNDVLYSLLRAH 166 (394)
T ss_pred EEEEEECCHhHhhccCCchHHHHHHHhh
Confidence 3578999999998333345566665543
No 215
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=50.32 E-value=27 Score=33.60 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=26.6
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCc
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTD 65 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~ 65 (189)
..-+.+||||+|.|- .+-.+.+.++++.-+....+|+.+ |-+.
T Consensus 118 gk~KVIIIDEad~Ls-~~A~NALLKtLEEPp~~v~fILaT-td~~ 160 (709)
T PRK08691 118 GKYKVYIIDEVHMLS-KSAFNAMLKTLEEPPEHVKFILAT-TDPH 160 (709)
T ss_pred CCcEEEEEECccccC-HHHHHHHHHHHHhCCCCcEEEEEe-CCcc
Confidence 556899999999763 333445555566555666555544 4333
No 216
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=49.69 E-value=19 Score=30.45 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=43.6
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+++++||-..=||......+..++..+.+. .+++++.....++++++...
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~-~tiii~sH~l~~~~~~~d~i 202 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD-KTIILSTHIMQEVEAICDRV 202 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCC-CEEEEEcCCHHHHHHhCCEE
Confidence 4678999999999999999899999998888654 56777776777788777554
No 217
>KOG0390|consensus
Probab=49.44 E-value=1.1e+02 Score=29.86 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=32.8
Q ss_pred cccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecC-CchHHHHHH
Q psy9740 18 FSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATM-TDTLEQVKS 72 (189)
Q Consensus 18 ~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl-~~~v~~l~~ 72 (189)
+....+.+||+||+|++=.. ...+..-+..+. -+..++.|.|. .-++.|+..
T Consensus 372 il~~~~glLVcDEGHrlkN~--~s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFn 424 (776)
T KOG0390|consen 372 ILLIRPGLLVCDEGHRLKNS--DSLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFN 424 (776)
T ss_pred HhcCCCCeEEECCCCCccch--hhHHHHHHHhcC-CCceEEeeCCcccccHHHHHH
Confidence 56788899999999998433 222333333332 33447778885 556777653
No 218
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=49.35 E-value=14 Score=28.31 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=37.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVK 71 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~ 71 (189)
..+.+.+++||--.-||......+..++..+.+.-.+++++..-+..+.+++
T Consensus 111 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~ 162 (173)
T cd03230 111 LHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLC 162 (173)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhC
Confidence 4567899999999999999999999998887644345555444444444444
No 219
>CHL00181 cbbX CbbX; Provisional
Probab=49.31 E-value=35 Score=28.85 Aligned_cols=47 Identities=15% Similarity=0.300 Sum_probs=28.7
Q ss_pred eeEEeccchhhhcc----ccHHH-HHHHHhhCCC-CCcEEEEeecCCchHHHH
Q psy9740 24 KFLVLDEADRLLSG----IFDEQ-MRTIFGAVPK-QKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 24 ~~lVlDEaD~ll~~----~f~~~-i~~Il~~l~~-~~Q~il~SATl~~~v~~l 70 (189)
..|+|||+|.|... ++..+ +..++..+.. ...+++.-||.++.+..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~ 176 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKF 176 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHH
Confidence 58999999998643 23343 4455555543 234556667877766543
No 220
>PRK13766 Hef nuclease; Provisional
Probab=48.98 E-value=18 Score=34.61 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=24.8
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 159 DVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 159 ~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
..|...|.++|+.........++||||+++
T Consensus 346 ~pK~~~L~~il~~~~~~~~~~kvlIF~~~~ 375 (773)
T PRK13766 346 HPKLEKLREIVKEQLGKNPDSRIIVFTQYR 375 (773)
T ss_pred ChHHHHHHHHHHHHHhcCCCCeEEEEeCcH
Confidence 458889999998876556789999999986
No 221
>PRK06526 transposase; Provisional
Probab=48.90 E-value=23 Score=29.48 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=30.0
Q ss_pred cCceeeEEeccchhhhc-cccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 20 LNRIKFLVLDEADRLLS-GIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~-~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
+.+..+|||||++.+-. ..-.+.+..++.....+.-++++|..-+.+.
T Consensus 157 l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w 205 (254)
T PRK06526 157 LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRW 205 (254)
T ss_pred hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHH
Confidence 56678999999998742 2234456666654333345777776655543
No 222
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=48.69 E-value=15 Score=29.05 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=39.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.=||......+..++..+.+...+++++..-+..+..++.
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d 204 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCD 204 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcC
Confidence 46779999999999999999999998888775444466666655555665554
No 223
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=48.61 E-value=14 Score=31.24 Aligned_cols=53 Identities=21% Similarity=0.316 Sum_probs=46.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCC-cEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQK-QTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~-Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.=||......+..++..+.+.- .++++|.-.+.+++.+++
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d 205 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCD 205 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCC
Confidence 46779999999999999999999999999988766 589999999999998865
No 224
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=48.59 E-value=15 Score=29.40 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=39.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+-+++++||--.-||......+..++..+.+...+++++..-...+.+++.
T Consensus 129 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d 181 (223)
T TIGR03771 129 ATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCD 181 (223)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 46779999999999999999999998888775445566666555555555554
No 225
>KOG0740|consensus
Probab=48.46 E-value=26 Score=31.64 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=36.6
Q ss_pred CceeeEEeccchhhhcc--------ccHHHHHHHHhhC----CCCCcEEEEeec-CCchHHHHHHhhccc
Q psy9740 21 NRIKFLVLDEADRLLSG--------IFDEQMRTIFGAV----PKQKQTLLFSAT-MTDTLEQVKSITKKQ 77 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~--------~f~~~i~~Il~~l----~~~~Q~il~SAT-l~~~v~~l~~~~l~~ 77 (189)
.....+.+||+|.+|.. +-.-.++.++... ..+-++++++|| +|.++.+.++.-+..
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~k 313 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVK 313 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhc
Confidence 44456779999999953 1223344444332 245588999999 788888877654443
No 226
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=48.44 E-value=16 Score=29.58 Aligned_cols=53 Identities=11% Similarity=0.217 Sum_probs=40.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||...=||......+..++..+.+. -+++++..-+..+.+++..
T Consensus 161 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sh~~~~~~~~~d~ 213 (249)
T PRK14253 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKKN-YTIVIVTHSMQQARRISDR 213 (249)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-CeEEEEecCHHHHHHhCCE
Confidence 3567999999999999999999999998888654 4667766655666665543
No 227
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.43 E-value=27 Score=33.44 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=26.1
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCc
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTD 65 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~ 65 (189)
++-+.+||||||.|-. +-.+.+.++++.-|...-+++ .+|-+.
T Consensus 117 gk~KV~IIDEVh~LS~-~A~NALLKtLEEPP~~v~FIL-aTtd~~ 159 (702)
T PRK14960 117 GRFKVYLIDEVHMLST-HSFNALLKTLEEPPEHVKFLF-ATTDPQ 159 (702)
T ss_pred CCcEEEEEechHhcCH-HHHHHHHHHHhcCCCCcEEEE-EECChH
Confidence 4557999999996643 344556666666555554444 445433
No 228
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.19 E-value=21 Score=29.72 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=33.2
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
++.+.+++||...-++......+..++..+.+..++++.|-.
T Consensus 191 ~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~ 232 (276)
T cd03241 191 DAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHL 232 (276)
T ss_pred CCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEech
Confidence 378899999999999998888888888777666666665543
No 229
>PF12846 AAA_10: AAA-like domain
Probab=48.15 E-value=18 Score=29.44 Aligned_cols=42 Identities=31% Similarity=0.273 Sum_probs=27.8
Q ss_pred CceeeEEeccchhhhcc-ccHHHHHHHHhhCCCCCcEEEEeecC
Q psy9740 21 NRIKFLVLDEADRLLSG-IFDEQMRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~-~f~~~i~~Il~~l~~~~Q~il~SATl 63 (189)
..-.++++|||+.++.. ...+.+..+++...+.. ..++-||.
T Consensus 219 ~~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~Rk~g-~~~~l~tQ 261 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNPSGAEFLDELLREGRKYG-VGLILATQ 261 (304)
T ss_pred CceEEEEeCCccccccccchhhhhhHHHHHHHhcC-CEEEEeeC
Confidence 44567799999999977 46666777777665443 34444553
No 230
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=48.13 E-value=17 Score=29.52 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=42.1
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+++++||--.-||......+..++..+.+. .+++++..-+..+.+++...
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~~~~~~d~i 213 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQQAARISDRT 213 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHHHHHHhCCEE
Confidence 3577999999999999999999999988887654 56777666666666666543
No 231
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=48.12 E-value=16 Score=29.22 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=41.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.=||......+..++..+.+...+++++..-+..+.+++..
T Consensus 149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~ 202 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDR 202 (232)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence 467799999999999999999999998887765445666666555566666643
No 232
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=48.10 E-value=17 Score=34.35 Aligned_cols=51 Identities=20% Similarity=0.252 Sum_probs=36.4
Q ss_pred cCceeeEEeccchhhhccc-cHHHHHHHHhhCCC-CCcEEEEeecCCchHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGI-FDEQMRTIFGAVPK-QKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~-f~~~i~~Il~~l~~-~~Q~il~SATl~~~v~~l 70 (189)
+.++..|+||+.|.+.... ..+.+-.+++.+.. ++|+++.|-.-|.++..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l 427 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTL 427 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhc
Confidence 4678899999999986543 45667777776654 678888777666665433
No 233
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=47.93 E-value=18 Score=28.85 Aligned_cols=54 Identities=28% Similarity=0.417 Sum_probs=41.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.=||....+.+..++..+.+...+++++..-+..+.+++..
T Consensus 140 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~ 193 (223)
T TIGR03740 140 LNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADH 193 (223)
T ss_pred hcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCE
Confidence 466799999999999999999999998887754445666666666666666543
No 234
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.83 E-value=14 Score=28.47 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=40.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+.+++||--.=||......+..++..+.+. -.+++++..-+..+.+++.
T Consensus 116 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 169 (178)
T cd03229 116 AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLAD 169 (178)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 4677899999999999999999999988877654 4567776665555555543
No 235
>KOG0018|consensus
Probab=47.81 E-value=29 Score=34.69 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=29.7
Q ss_pred CCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEee
Q psy9740 16 NTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSA 61 (189)
Q Consensus 16 ~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SA 61 (189)
+.+.+++ |+||||+|.=||.--..-+...+. ..+.|+|+.|=
T Consensus 1069 hsy~PaP--FfvlDEiDAALDntNi~kvasyIr--~~~~Q~IvISL 1110 (1141)
T KOG0018|consen 1069 HSYKPAP--FFVLDEIDAALDNTNIGKVASYIR--SSNFQFIVISL 1110 (1141)
T ss_pred ccCCCCC--ceehhhHHHHhhhccHHHHHHHHh--cCCceEEEEec
Confidence 5555555 999999999998755444444444 45799998863
No 236
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=47.59 E-value=2.3e+02 Score=28.32 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=25.1
Q ss_pred EEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy9740 153 YVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDT 187 (189)
Q Consensus 153 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns 187 (189)
.++.....|..++++-++... ...+|+||.|.|
T Consensus 403 ~iy~t~~~K~~Aii~ei~~~~--~~gqPVLVgT~S 435 (925)
T PRK12903 403 SIFGTKHAKWKAVVKEVKRVH--KKGQPILIGTAQ 435 (925)
T ss_pred cEEEcHHHHHHHHHHHHHHHH--hcCCCEEEEeCc
Confidence 455667788888888777655 457899999987
No 237
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=47.52 E-value=18 Score=27.98 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=39.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+.+++||--.=||......+..++..+.+...+++++..-...+.+++.
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d 172 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCD 172 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 46778999999999999998999988888775434566666555555655554
No 238
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=47.18 E-value=17 Score=27.64 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=38.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+-+.+++||--.=||......+..++..+.+...+++++..-...+.+++.
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d 150 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIAD 150 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 45678999999999999999999988888775444456665544444555543
No 239
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=47.11 E-value=14 Score=28.72 Aligned_cols=16 Identities=19% Similarity=0.497 Sum_probs=11.6
Q ss_pred ceeeEEeccchhhhcc
Q psy9740 22 RIKFLVLDEADRLLSG 37 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~ 37 (189)
..+++|+|||-++.+.
T Consensus 192 ~~d~vIvDEAsq~~e~ 207 (236)
T PF13086_consen 192 KFDVVIVDEASQITEP 207 (236)
T ss_dssp --SEEEETTGGGS-HH
T ss_pred cCCEEEEeCCCCcchH
Confidence 7889999999998654
No 240
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.99 E-value=27 Score=26.65 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=32.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
..+.+++++||--.-||......+..++..+.+. .+++++..
T Consensus 112 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tii~~sh 153 (171)
T cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAKG-KTVIVIAH 153 (171)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCC-CEEEEEec
Confidence 4567899999999999999999999998887654 45555443
No 241
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=46.63 E-value=18 Score=29.20 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=39.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||-..=+|......+..++..+.+...+++++..-...+.+++..
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~ 205 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASR 205 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 466789999999999999999999888887754344566666555555555543
No 242
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=46.62 E-value=18 Score=28.61 Aligned_cols=53 Identities=15% Similarity=0.275 Sum_probs=39.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.-||......+..++..+.+...+++++..-+..+.+++.
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d 206 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRH 206 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 46678999999999999999999998888775444566666555555555543
No 243
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=46.57 E-value=15 Score=29.04 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=38.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+.+++||...-+|......+..++..+.+. ..+++++..-...+.+++.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d 197 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIAS 197 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcC
Confidence 4567899999999999999999999888877542 3455555554445555543
No 244
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.41 E-value=40 Score=31.98 Aligned_cols=44 Identities=20% Similarity=0.395 Sum_probs=25.5
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCC--CCCcEEEEeecCCchHH
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVP--KQKQTLLFSATMTDTLE 68 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~--~~~Q~il~SATl~~~v~ 68 (189)
+.-+.+||||||.|-. +....+++.+- ...=++++.+|-+..+.
T Consensus 118 g~~kVIIIDEad~Lt~----~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 118 GRYKVFIIDEAHMLTR----EAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCceEEEEEChHhCCH----HHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 4567999999999842 23344555542 23333445566555544
No 245
>KOG0354|consensus
Probab=46.34 E-value=22 Score=34.27 Aligned_cols=30 Identities=30% Similarity=0.321 Sum_probs=26.6
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 159 DVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 159 ~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
..|+..|.+.|.......+..++||||.+|
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R 423 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETR 423 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehH
Confidence 569999999998888888899999999986
No 246
>PRK04132 replication factor C small subunit; Provisional
Probab=46.19 E-value=24 Score=34.61 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=26.7
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
+-+.+||||||.|= .+-++.+.++++.-++... +++.++-+..+
T Consensus 630 ~~KVvIIDEaD~Lt-~~AQnALLk~lEep~~~~~-FILi~N~~~kI 673 (846)
T PRK04132 630 SFKIIFLDEADALT-QDAQQALRRTMEMFSSNVR-FILSCNYSSKI 673 (846)
T ss_pred CCEEEEEECcccCC-HHHHHHHHHHhhCCCCCeE-EEEEeCChhhC
Confidence 45799999999994 3345556666665444443 44445544443
No 247
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=46.14 E-value=19 Score=28.62 Aligned_cols=54 Identities=15% Similarity=0.036 Sum_probs=39.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+-+++++||.-.=||......+..++..+.+...+++++.--...+.+++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~ 206 (214)
T PRK13543 153 LSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTR 206 (214)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcce
Confidence 467789999999999999988888888876654445666666555555555543
No 248
>KOG0951|consensus
Probab=46.07 E-value=77 Score=32.86 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=35.8
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHH------HHHHHhhCCCCCcEEEEeecC
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQ------MRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~------i~~Il~~l~~~~Q~il~SATl 63 (189)
+|+||.+.-.+ . +...+++.+.||+|.+-..+ .+- |+.|...+-++..++.+|..+
T Consensus 1238 ii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~r~ia~q~~k~ir~v~ls~~l 1299 (1674)
T KOG0951|consen 1238 IISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVY-GAVYEVICSMRYIASQLEKKIRVVALSSSL 1299 (1674)
T ss_pred EEechhHHHHH-h-----hhhhcceEeeehhhhhcccC-CceEEEEeeHHHHHHHHHhheeEEEeehhh
Confidence 58999987654 2 46778899999999886321 111 445555555555566665554
No 249
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=45.75 E-value=18 Score=28.99 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=39.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.-||......+..++..+.+...+++++..-...+.+++.
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d 211 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLAD 211 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 35678999999999999999999998888775434466666655555555554
No 250
>KOG0924|consensus
Probab=45.48 E-value=31 Score=33.41 Aligned_cols=54 Identities=17% Similarity=0.293 Sum_probs=31.6
Q ss_pred ccCceeeEEeccchhh-hccc-cHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhc
Q psy9740 19 SLNRIKFLVLDEADRL-LSGI-FDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITK 75 (189)
Q Consensus 19 ~l~~l~~lVlDEaD~l-l~~~-f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l 75 (189)
.|.+-+.+|+||||.= +... ...-++.+++. ..+..++.+||||..+ .++..|-
T Consensus 465 ~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKliVtSATm~a~--kf~nfFg 520 (1042)
T KOG0924|consen 465 DLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKLIVTSATMDAQ--KFSNFFG 520 (1042)
T ss_pred hhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceEEEeeccccHH--HHHHHhC
Confidence 5777889999999964 1211 11222222221 2467889999999653 4444443
No 251
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=45.23 E-value=19 Score=28.91 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=37.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.-||......+..++..+.+..-+++++..-...+.+++.
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d 210 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCD 210 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 46789999999999999988888888877664433356665555555555544
No 252
>PRK06620 hypothetical protein; Validated
Probab=44.73 E-value=23 Score=28.48 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=27.1
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCC-CCCcEEEEeecCCchH
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVP-KQKQTLLFSATMTDTL 67 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~-~~~Q~il~SATl~~~v 67 (189)
+....+++||+|.+-+ ..+-.+++.+. .++|+++.|.|-|+..
T Consensus 84 ~~~d~lliDdi~~~~~----~~lf~l~N~~~e~g~~ilits~~~p~~l 127 (214)
T PRK06620 84 EKYNAFIIEDIENWQE----PALLHIFNIINEKQKYLLLTSSDKSRNF 127 (214)
T ss_pred hcCCEEEEeccccchH----HHHHHHHHHHHhcCCEEEEEcCCCcccc
Confidence 3456899999995411 34455555554 4567777777777753
No 253
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=44.70 E-value=30 Score=30.42 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=24.3
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
+.-+.+||||||.| +..-.+.+-+.++.-|....++++|
T Consensus 140 ~~~kVviIDead~m-~~~aanaLLK~LEepp~~~~~IL~t 178 (365)
T PRK07471 140 GGWRVVIVDTADEM-NANAANALLKVLEEPPARSLFLLVS 178 (365)
T ss_pred CCCEEEEEechHhc-CHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 56678999999988 3334445555555544455455543
No 254
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=44.65 E-value=28 Score=32.87 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=30.7
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
-..+.+|+|||-.+ -.+.|..+++.+|++.+++++.-.
T Consensus 264 l~~dvlIvDEaSMv----d~~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 264 LHLDVLVVDEASMV----DLPMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred CCCCeEEEChHhcc----cHHHHHHHHHhcccCCEEEEecch
Confidence 34589999999876 467788899999999998887544
No 255
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=44.62 E-value=26 Score=28.72 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=41.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+-+.+++||.-.-||......+..++..+.+. .+++++..-+..+.+++..
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~tiii~tH~~~~i~~~~d~ 218 (259)
T PRK14260 166 AIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE-LTIAIVTHNMQQATRVSDF 218 (259)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCe
Confidence 4677999999999999999899998888877654 4677766666667766654
No 256
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.58 E-value=35 Score=31.89 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=27.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~ 68 (189)
...-+.+||||+|.|- .+-.+.+.++++.-|...-++ +.+|-+..+.
T Consensus 117 ~~~~KVvIIdev~~Lt-~~a~naLLk~LEepp~~~~fI-l~t~~~~kl~ 163 (576)
T PRK14965 117 RSRYKIFIIDEVHMLS-TNAFNALLKTLEEPPPHVKFI-FATTEPHKVP 163 (576)
T ss_pred cCCceEEEEEChhhCC-HHHHHHHHHHHHcCCCCeEEE-EEeCChhhhh
Confidence 3556899999999764 333445555555544444444 4446555443
No 257
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=44.44 E-value=22 Score=28.31 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=39.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.=||......+..++..+.+. .+++++..-...+.+++..
T Consensus 157 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~ 209 (227)
T cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADR 209 (227)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCE
Confidence 4567899999999999999999999988887655 5666655544455555543
No 258
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=44.31 E-value=29 Score=32.27 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=28.7
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCch
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDT 66 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~ 66 (189)
.+.-+.+|+||||.|-. +-.+.+.++++.-|+....++++ |-+..
T Consensus 115 ~~~~KVvIIDEad~Lt~-~A~NALLK~LEEpp~~t~FIL~t-td~~k 159 (535)
T PRK08451 115 MARFKIFIIDEVHMLTK-EAFNALLKTLEEPPSYVKFILAT-TDPLK 159 (535)
T ss_pred cCCeEEEEEECcccCCH-HHHHHHHHHHhhcCCceEEEEEE-CChhh
Confidence 45678999999998843 34445555666556666666554 44433
No 259
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=44.30 E-value=19 Score=28.32 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=38.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.=||......+..++..+.+..-+++++.--+..+.+++.
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d 203 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVAD 203 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 46679999999999999988888888888775433356665555555555554
No 260
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=44.27 E-value=32 Score=33.76 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=40.0
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCc
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTD 65 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~ 65 (189)
.+.-|+|+|.-|.+-+.-....|+.++++.|.+.+.++.|=+-|+
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 334699999999999999999999999999999999999888764
No 261
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.21 E-value=32 Score=34.09 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=27.1
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHH
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~ 68 (189)
++-+.+||||||.|- .+-.+.+.++++--|....+|+. +|-+..+.
T Consensus 118 gk~KViIIDEAh~LT-~eAqNALLKtLEEPP~~vrFILa-TTe~~kLl 163 (944)
T PRK14949 118 GRFKVYLIDEVHMLS-RSSFNALLKTLEEPPEHVKFLLA-TTDPQKLP 163 (944)
T ss_pred CCcEEEEEechHhcC-HHHHHHHHHHHhccCCCeEEEEE-CCCchhch
Confidence 456799999999993 33344444455544444444443 56555544
No 262
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=44.13 E-value=12 Score=36.78 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=23.9
Q ss_pred eeehHhh-----HHHHhc-CCCcccCceeeEEeccchhhh
Q psy9740 2 IATPGRL-----ADHLDT-CNTFSLNRIKFLVLDEADRLL 35 (189)
Q Consensus 2 V~TPgrl-----~~ll~~-~~~~~l~~l~~lVlDEaD~ll 35 (189)
.||++.| .|.+.. ......+.+.|.|+||||.||
T Consensus 179 YgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 179 YATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 5777776 443332 133456899999999999998
No 263
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=44.11 E-value=9.7 Score=37.46 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=22.4
Q ss_pred eeehHhh-HHHHhcC-----CCcccCceeeEEeccchhhh
Q psy9740 2 IATPGRL-ADHLDTC-----NTFSLNRIKFLVLDEADRLL 35 (189)
Q Consensus 2 V~TPgrl-~~ll~~~-----~~~~l~~l~~lVlDEaD~ll 35 (189)
+||.+-| .|++..+ .....+++.|.|+||+|.+|
T Consensus 176 YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 176 YGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 5666665 3444431 11124889999999999998
No 264
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=44.10 E-value=25 Score=27.52 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=38.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCc-hHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTD-TLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~-~v~~l~~~ 73 (189)
+.+.+.+++||-..=||......+..++..+.+...+++++..-+. .+.+++..
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~ 181 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDK 181 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCE
Confidence 4567899999999999999999999888877543445555555443 45555543
No 265
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=44.06 E-value=35 Score=26.32 Aligned_cols=41 Identities=7% Similarity=0.249 Sum_probs=22.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
.+.-+.+|+||+|.|-.. ..+.+...++.-|+..- +++.++
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~-~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTL-FILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeE-EEEEEC
Confidence 466789999999999543 23334444444333333 334444
No 266
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=43.78 E-value=20 Score=28.90 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=40.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
..+.+.+++||-..=||......+..++..+.+..-+++++..-+..+.+++..
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~ 210 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASR 210 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 467789999999999999888899888887764445666666555556555543
No 267
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=43.69 E-value=20 Score=30.44 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=45.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+++++||--.=||......+..++..+.+.-.++++|.....++++++...
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i 208 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRL 208 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 4678999999999999999999999999888655567888887778888776543
No 268
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.55 E-value=40 Score=30.98 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=25.6
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
.+.-+.+|+||+|.|-. +-.+.+.+.++.-|+....++ .+|-+..+
T Consensus 114 ~~~~KVvIIDEah~Ls~-~A~NaLLK~LEePp~~v~fIl-atte~~Kl 159 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSN-SAFNALLKTLEEPAPHVKFIL-ATTEVKKI 159 (491)
T ss_pred cCCceEEEEeChHhCCH-HHHHHHHHHHhCCCCCeEEEE-EeCChHHH
Confidence 35678999999997743 233344444444444444444 44544444
No 269
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.43 E-value=26 Score=32.33 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=24.0
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
++-+.+|+||||.|-.. -.+.+-+.++.-|....+++.+
T Consensus 118 ~~~kVvIIDEad~ls~~-a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHH-HHHHHHHHHhCCCCCEEEEEEe
Confidence 45579999999987543 2344444555545566555543
No 270
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=43.43 E-value=19 Score=31.20 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=44.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+++++||--.=||...+..+..++..+.+.-.++++|.-...++++++...
T Consensus 188 ~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i 242 (340)
T PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRL 242 (340)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 4678999999999999999999999999887654567888877777777776544
No 271
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=43.26 E-value=31 Score=33.42 Aligned_cols=45 Identities=9% Similarity=0.166 Sum_probs=30.1
Q ss_pred eeEEeccchhhhcccc----HHHHHHHHhhCCCCCcEEEEeecCCchHH
Q psy9740 24 KFLVLDEADRLLSGIF----DEQMRTIFGAVPKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 24 ~~lVlDEaD~ll~~~f----~~~i~~Il~~l~~~~Q~il~SATl~~~v~ 68 (189)
..|+|||+|.|+..|- ..++..+++.+-.+-++.+..||=+++..
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFS 328 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHH
Confidence 4899999999986542 34555666655445566666777666543
No 272
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=43.18 E-value=24 Score=28.59 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=40.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+.+++||--.-||......+..++..+.+. .+++++..-...+.+++...
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i 217 (252)
T PRK14239 164 ATSPKIILLDEPTSALDPISAGKIEETLLGLKDD-YTMLLVTRSMQQASRISDRT 217 (252)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhC-CeEEEEECCHHHHHHhCCEE
Confidence 4677999999999999999999999998887654 45666555445556555433
No 273
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=43.15 E-value=32 Score=33.07 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=29.6
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
....++|+|||..+ -...+..++..++...+++++.-.
T Consensus 415 ~~~~llIvDEaSMv----d~~~~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 415 IDCDLLIVDESSMM----DTWLALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred ccCCEEEEeccccC----CHHHHHHHHHhCCCCCEEEEECcc
Confidence 45689999999977 245678888889888888887544
No 274
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=43.12 E-value=18 Score=29.14 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=41.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+++++||--.-||......+..++..+.+. ..+++++..-+..+.+++...
T Consensus 130 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v 185 (230)
T TIGR01184 130 SIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRV 185 (230)
T ss_pred HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 3677999999999999999999999888776542 446777666666666665533
No 275
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=43.12 E-value=23 Score=28.13 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=37.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.-||......+..++..+.+...+++++.--...+..++.
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d 217 (224)
T TIGR02324 165 IADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVAD 217 (224)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcc
Confidence 46678999999999999998888888887775433455555444444444444
No 276
>PRK04841 transcriptional regulator MalT; Provisional
Probab=42.96 E-value=30 Score=33.32 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=37.1
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCc
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTD 65 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~ 65 (189)
..--.+|+|++|.+-+....+.+..++...|.+..+++.|-+.|+
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 334578999999986666788999999999999999898888654
No 277
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=42.91 E-value=33 Score=27.14 Aligned_cols=47 Identities=32% Similarity=0.301 Sum_probs=34.7
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
+.+.+++++||-..=||......+..++..+.+.. +++++..-+..+
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-tii~~sh~~~~~ 201 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAFKDC-TVLTIAHRLDTI 201 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCC-EEEEEeCCHHHH
Confidence 45678999999999999998999999888776554 444444433333
No 278
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.36 E-value=17 Score=29.23 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=41.6
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+.+++||...=||......+..++..+.+. ..+++++..-...+.+++...
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i 201 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRI 201 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEE
Confidence 4677999999999999999999999988877542 446666666656666665543
No 279
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=42.35 E-value=22 Score=28.03 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=39.7
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||.-.=||......+..++..+.+...+++++..-...+.+++..
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~ 201 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDR 201 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 356799999999999999888888888877654445666666555556655543
No 280
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=42.31 E-value=29 Score=32.10 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 160 VKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 160 ~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
-|+..+.++++....++...++|||++-|
T Consensus 348 PKl~~l~eilke~~~k~~~~RvIVFT~yR 376 (542)
T COG1111 348 PKLEKLREILKEQLEKNGDSRVIVFTEYR 376 (542)
T ss_pred ccHHHHHHHHHHHHhcCCCceEEEEehhH
Confidence 49999999999988888889999999864
No 281
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.21 E-value=21 Score=28.14 Aligned_cols=54 Identities=17% Similarity=0.205 Sum_probs=39.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.-||......+..++..+.+. .-+++++..-...+.+++..
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 198 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQR 198 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCE
Confidence 4678999999999999999999999888877543 34566655555556555543
No 282
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.20 E-value=19 Score=28.40 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=40.1
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.-||......+..++..+.+ ...+++++..-+..+.+++..
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 200 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADR 200 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCE
Confidence 467799999999999999989999888887754 234666666555556665543
No 283
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=42.11 E-value=40 Score=27.83 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=45.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhc
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITK 75 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l 75 (189)
..+.+.+|+||.=.=||--....+..++.++...-..++||.-.-++++.+++...
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvi 204 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVI 204 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEE
Confidence 46788999999988788778888888888888767788888887788888876554
No 284
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=41.94 E-value=40 Score=29.99 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=27.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQ 69 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~ 69 (189)
.++-+.+++||||.|-.. ..+.+-+.++.-|++. ++++.||-+..+..
T Consensus 115 ~~~~kViiIDead~m~~~-aanaLLk~LEep~~~~-~fIL~a~~~~~llp 162 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER-AANALLKAVEEPPPRT-VWLLCAPSPEDVLP 162 (394)
T ss_pred cCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCC-eEEEEECChHHChH
Confidence 356689999999999543 2344444444433344 44445554555543
No 285
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=41.88 E-value=25 Score=27.61 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=37.1
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQ 69 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~ 69 (189)
+.+.+++++||--.-||......+..++..+.+...+++++..-+....+
T Consensus 141 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 141 LSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh
Confidence 46778999999999999999999998887765444566666554444433
No 286
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.77 E-value=34 Score=27.30 Aligned_cols=47 Identities=23% Similarity=0.271 Sum_probs=34.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
..+.+++++||--.-||......+..++..+.+.. +++++..-...+
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~-tii~~sh~~~~~ 200 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLVQAALERLMKNR-TTFVIAHRLSTI 200 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCC-EEEEEecCHHHH
Confidence 35678999999999999999999999988776544 444444433433
No 287
>PRK04296 thymidine kinase; Provisional
Probab=41.65 E-value=28 Score=27.30 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=22.3
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
.+...+|+|||..+ + .+++..+++.+...-..+++++-
T Consensus 77 ~~~dvviIDEaq~l-~---~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 77 EKIDCVLIDEAQFL-D---KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred CCCCEEEEEccccC-C---HHHHHHHHHHHHHcCCeEEEEec
Confidence 35678999999432 2 24466666665444444444443
No 288
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=41.62 E-value=28 Score=28.60 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=41.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||.-.=||......+..++..+.+. -+++++..-...+.+++..
T Consensus 167 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~tvi~vtH~~~~~~~~~d~ 219 (264)
T PRK14243 167 AVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQAARVSDM 219 (264)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCE
Confidence 3677899999999999999999999998887654 3666666655666666643
No 289
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.54 E-value=26 Score=27.34 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=37.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCc-hHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTD-TLEQVK 71 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~-~v~~l~ 71 (189)
+.+.+.+++||-..-+|......+..++..+.+...+++++..-+. .+.+++
T Consensus 124 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~ 176 (192)
T cd03232 124 AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKF 176 (192)
T ss_pred hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhC
Confidence 4567899999999999999889988888877543345555554444 344444
No 290
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=41.43 E-value=33 Score=28.53 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=27.6
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQ 69 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~ 69 (189)
.+.-+.+++||||.|-. +-...+.+.+.- |+....+++.+..+..+..
T Consensus 107 ~~~~kviiidead~mt~-~A~nallk~lEe-p~~~~~~il~~n~~~~il~ 154 (325)
T COG0470 107 EGGYKVVIIDEADKLTE-DAANALLKTLEE-PPKNTRFILITNDPSKILP 154 (325)
T ss_pred CCCceEEEeCcHHHHhH-HHHHHHHHHhcc-CCCCeEEEEEcCChhhccc
Confidence 36789999999999965 233333333333 3344445555555555444
No 291
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=41.40 E-value=26 Score=28.54 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=41.6
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+++++||--.=||......+..++..+.+...+++++..-...+.+++...
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i 208 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHL 208 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEE
Confidence 4667999999999999999888888888776543456777666666666666543
No 292
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=41.35 E-value=21 Score=28.07 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=37.7
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQ 69 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~ 69 (189)
+.+.+.+++||.-.=||......+..++..+.+...+++++..-+..+.+
T Consensus 120 ~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 120 LLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 46778999999999999988888888887775544566666655555544
No 293
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=41.33 E-value=24 Score=35.11 Aligned_cols=35 Identities=31% Similarity=0.518 Sum_probs=22.3
Q ss_pred eEEeccchhhhccc-cHHHHHHHHhhCCCCCc-EEEEeecCCc
Q psy9740 25 FLVLDEADRLLSGI-FDEQMRTIFGAVPKQKQ-TLLFSATMTD 65 (189)
Q Consensus 25 ~lVlDEaD~ll~~~-f~~~i~~Il~~l~~~~Q-~il~SATl~~ 65 (189)
.|++||+|.+-..+ .+ +.| ..+ ++| ++.||||.+.
T Consensus 204 ivIiDEPh~~~~~~k~~---~~i-~~l--npl~~lrysAT~~~ 240 (986)
T PRK15483 204 VVIIDEPHRFPRDNKFY---QAI-EAL--KPQMIIRFGATFPD 240 (986)
T ss_pred EEEEECCCCCCcchHHH---HHH-Hhc--CcccEEEEeeecCC
Confidence 56899999994422 22 333 333 333 4779999987
No 294
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=41.14 E-value=24 Score=28.12 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=40.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCC-chHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMT-DTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~-~~v~~l~~~~ 74 (189)
+.+.+++++||.-.=||......+..++..+.+...+++++..-. .++.+++...
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i 214 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRI 214 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEE
Confidence 356799999999999999988888888877654344666655554 5677766543
No 295
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=40.51 E-value=77 Score=31.00 Aligned_cols=24 Identities=4% Similarity=0.015 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 164 YLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 164 ~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
.+.+.+.... ....+++||||+|.
T Consensus 661 ~ia~~i~~l~-~~~~g~~LVlftS~ 684 (850)
T TIGR01407 661 EIASYIIEIT-AITSPKILVLFTSY 684 (850)
T ss_pred HHHHHHHHHH-HhcCCCEEEEeCCH
Confidence 3444444433 22357999999985
No 296
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=40.17 E-value=27 Score=28.12 Aligned_cols=53 Identities=11% Similarity=0.195 Sum_probs=40.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.-||......+..++..+.+. .+++++..-...+.+++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~ 211 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGK-HSVVVVEHDMEFVRSIADK 211 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhCCE
Confidence 4667999999999999999999999988887654 4666666555556655543
No 297
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=40.07 E-value=29 Score=28.17 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=39.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
..+.+++++||--.-||......+..++..+.+. .+++++..-+..+.+++..
T Consensus 162 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivtH~~~~~~~~~d~ 214 (250)
T PRK14245 162 AVSPSVLLMDEPASALDPISTAKVEELIHELKKD-YTIVIVTHNMQQAARVSDK 214 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHhhCCE
Confidence 3678999999999999999999999888877554 3555555555555555543
No 298
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=39.99 E-value=30 Score=28.13 Aligned_cols=53 Identities=9% Similarity=0.154 Sum_probs=39.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.-||......+..++..+.+. .+++++..-+..+.+++..
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 166 AIEPNVILMDEPTSALDPISTGKIEELIINLKES-YTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCE
Confidence 4677999999999999999999999888887544 4566655444555555543
No 299
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=39.95 E-value=26 Score=28.57 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=41.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
..+.+.+++||--.-||......+..++..+.+...+++++..-+..+.+++...
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i 207 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHV 207 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 3567999999999999999899999888887544446666666666666666543
No 300
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=39.91 E-value=13 Score=31.39 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=12.5
Q ss_pred eeeEEeccchhhhcc
Q psy9740 23 IKFLVLDEADRLLSG 37 (189)
Q Consensus 23 l~~lVlDEaD~ll~~ 37 (189)
-.++|+||||.|.+.
T Consensus 237 ~~~lIiDEAHnL~d~ 251 (289)
T smart00489 237 DSIVIFDEAHNLDNV 251 (289)
T ss_pred ccEEEEeCccChHHH
Confidence 579999999998653
No 301
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=39.91 E-value=13 Score=31.39 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=12.5
Q ss_pred eeeEEeccchhhhcc
Q psy9740 23 IKFLVLDEADRLLSG 37 (189)
Q Consensus 23 l~~lVlDEaD~ll~~ 37 (189)
-.++|+||||.|.+.
T Consensus 237 ~~~lIiDEAHnL~d~ 251 (289)
T smart00488 237 DSIVIFDEAHNLDNV 251 (289)
T ss_pred ccEEEEeCccChHHH
Confidence 579999999998653
No 302
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=39.89 E-value=31 Score=28.48 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=41.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+++++||--.=||......+..++..+.+. .+++++..-...+.+++...
T Consensus 170 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-~tiiivtH~~~~~~~~~d~i 223 (269)
T PRK14259 170 AIEPEVILMDEPCSALDPISTLKIEETMHELKKN-FTIVIVTHNMQQAVRVSDMT 223 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCEE
Confidence 4677999999999999999888888888877543 56777666666666666443
No 303
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=39.41 E-value=37 Score=27.17 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=34.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCch
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDT 66 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~ 66 (189)
+.+.+++++||.-.-||......+..++..+.+. .+++++..-+..
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~tiii~sH~~~~ 199 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMRNMHDICAG-RTVIIIAHRLST 199 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH
Confidence 3567999999999999999999999988877654 455555544333
No 304
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=39.40 E-value=23 Score=28.40 Aligned_cols=54 Identities=17% Similarity=0.224 Sum_probs=39.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.=||......+..++..+.+...+++++..-...+.+++..
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~ 206 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADR 206 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCE
Confidence 467799999999999999988888888877654444666655444455555543
No 305
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=39.32 E-value=26 Score=28.17 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=39.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.=||......+..++..+.+...+++++..-+..+.+++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~ 206 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCER 206 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCE
Confidence 467799999999999999888888888877654344666666555556665543
No 306
>KOG0933|consensus
Probab=39.09 E-value=30 Score=34.53 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=38.8
Q ss_pred cccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 18 FSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 18 ~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
+.+++--+-|+||+|.=||.++-.-|-++++.-=++.|.|.+|=-
T Consensus 1100 L~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLK 1144 (1174)
T KOG0933|consen 1100 LKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLK 1144 (1174)
T ss_pred HcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEch
Confidence 456777789999999999999999999999876678999999853
No 307
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=39.06 E-value=28 Score=27.54 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=39.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.=||......+..++..+.+...+++++.--...+.+++..
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADR 201 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccE
Confidence 467799999999999999988898888877754334666655444455555543
No 308
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=39.05 E-value=23 Score=28.49 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=39.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||.-.-||......+..++..+.+. ..+++++..-...+.+++..
T Consensus 161 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~ 215 (243)
T TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADR 215 (243)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 4667999999999999999899998888877532 34666655555555555543
No 309
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.96 E-value=24 Score=29.13 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=39.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.-||......+..++..+.+...+++++..-...+.+++.
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d 204 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISD 204 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 46679999999999999999999988888775433466666655555555554
No 310
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.64 E-value=24 Score=29.53 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=38.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||.-.-||......+..++..+.+..-+++++..-...+.+++.
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~d 212 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYAD 212 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 35678999999999999999999998888776433455555544445555553
No 311
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.47 E-value=41 Score=26.69 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=33.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecC
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl 63 (189)
+.+.+++++||.-.=||......+..++..+.+.. +++++..-
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-tii~~sh~ 197 (229)
T cd03254 155 LRDPKILILDEATSNIDTETEKLIQEALEKLMKGR-TSIIIAHR 197 (229)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCC-EEEEEecC
Confidence 46789999999999999999999988888876544 44444433
No 312
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=38.47 E-value=29 Score=27.20 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=37.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.=||......+..++..+.+...+++++.--+..+.+++.
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d 194 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVAD 194 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcC
Confidence 46678999999999999998999888887765433455554443444444443
No 313
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.39 E-value=35 Score=27.98 Aligned_cols=51 Identities=10% Similarity=0.251 Sum_probs=37.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVK 71 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~ 71 (189)
+.+.+.+++||-..-||......+..++..+.... +++++..-...+.+++
T Consensus 169 ~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-tiilvsh~~~~~~~~~ 219 (257)
T PRK14246 169 ALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEI-AIVIVSHNPQQVARVA 219 (257)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCc-EEEEEECCHHHHHHhC
Confidence 46779999999999999999999999998876554 4444444444444444
No 314
>KOG0952|consensus
Probab=38.39 E-value=10 Score=37.87 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=42.6
Q ss_pred CeeehHhhHHHHhcC-CCcccCceeeEEeccchhhhccccHHHHHHHHhh-------CCCCCcEEEEeecCCchHHHHHH
Q psy9740 1 VIATPGRLADHLDTC-NTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGA-------VPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 1 lV~TPgrl~~ll~~~-~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~-------l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+|.||.+.-.+...- ..-.+.++..+|+||.+.+-+. +.+-++.|... .++..|.+.+ +|.+.....+++
T Consensus 1024 ~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s~~t~~~vr~~gl-sta~~na~dla~ 1101 (1230)
T KOG0952|consen 1024 VITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYISSQTEEPVRYLGL-STALANANDLAD 1101 (1230)
T ss_pred EEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCccccCcchhhhhH-hhhhhccHHHHH
Confidence 477888877776631 3345789999999999976543 44444433322 2223333333 233444555555
Q ss_pred hhccc
Q psy9740 73 ITKKQ 77 (189)
Q Consensus 73 ~~l~~ 77 (189)
++--.
T Consensus 1102 wl~~~ 1106 (1230)
T KOG0952|consen 1102 WLNIK 1106 (1230)
T ss_pred HhCCC
Confidence 55443
No 315
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.38 E-value=34 Score=28.19 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=40.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||--.=||......+..++..+.+. .+++++..-...+.+++..
T Consensus 165 ~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~-~tii~isH~~~~i~~~~d~ 217 (261)
T PRK14263 165 ATEPEVLLLDEPCSALDPIATRRVEELMVELKKD-YTIALVTHNMQQAIRVADT 217 (261)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHhCCE
Confidence 4678999999999999999999999988887554 4666666555556665544
No 316
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.38 E-value=25 Score=29.16 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=40.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.=||......+..++..+.+...+++++..-+..+.+++..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~ 214 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADF 214 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCE
Confidence 466799999999999999988998888887754445677766555556555543
No 317
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=38.35 E-value=29 Score=27.27 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=39.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.=||......+..++..+.+...+++++..-+..+.+++.
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d 204 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRH 204 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 46779999999999999988888888887775434466666655555555543
No 318
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=38.30 E-value=23 Score=28.59 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=41.1
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+.+++||...=+|....+.+..++..+... ..+++++..-+..+.+++...
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i 201 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRI 201 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEE
Confidence 3567999999999999999999998888877543 456666666666666665443
No 319
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.15 E-value=35 Score=26.80 Aligned_cols=52 Identities=13% Similarity=0.275 Sum_probs=39.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
..+.+++++||--.=||......+..++..+.+. -+++++..-...+.+++.
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~vsH~~~~~~~~~d 197 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGED-RIVILSTHIVEDVESLCN 197 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCC-CEEEEEcCCHHHHHHhCC
Confidence 4677999999999999999999999999887655 456665554455555553
No 320
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.09 E-value=49 Score=31.11 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=26.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~ 68 (189)
.+.-+.+||||||.|-.. -.+.+-++++..|...-+|+. +|-+..+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~-tte~~kll 162 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFA-TTEPEKVL 162 (584)
T ss_pred cCCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEE-eCChHhhH
Confidence 356689999999998543 333444444444444433443 35555443
No 321
>PRK14873 primosome assembly protein PriA; Provisional
Probab=38.01 E-value=1.8e+02 Score=27.82 Aligned_cols=52 Identities=8% Similarity=0.081 Sum_probs=31.1
Q ss_pred ccCceeeEEeccch-hhhccc-----cHHHHHHHHhhCCCCCcEEEEeecCCchHHHHH
Q psy9740 19 SLNRIKFLVLDEAD-RLLSGI-----FDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVK 71 (189)
Q Consensus 19 ~l~~l~~lVlDEaD-~ll~~~-----f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~ 71 (189)
.++++..+|+||=| ..+... +..++...... -.+..+++-|||-+-+....+
T Consensus 254 P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~-~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 254 PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH-QHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-HcCCcEEEECCCCCHHHHHHH
Confidence 47889999888764 444322 12223222222 257789999999776655444
No 322
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=37.95 E-value=25 Score=29.45 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=32.4
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcE
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQT 56 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~ 56 (189)
-+.+++|+||+=-+||..-+.++-.++..+.+.++.
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~l 193 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLLLELKKERGL 193 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCc
Confidence 456899999999999999999999999999888765
No 323
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=37.90 E-value=38 Score=30.31 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=28.6
Q ss_pred eeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 24 KFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 24 ~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
+|+++|||-.| -..+|++|+..+.+...+++..
T Consensus 353 ~FiIIDEaQNL----TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 353 SFIIIDEAQNL----TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ceEEEehhhcc----CHHHHHHHHHhccCCCEEEEcC
Confidence 57899999887 6789999999999988888764
No 324
>KOG2543|consensus
Probab=37.76 E-value=59 Score=29.21 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=35.2
Q ss_pred CceeeEEeccchhhhccc--cHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 21 NRIKFLVLDEADRLLSGI--FDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~--f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
...=++|+|-||.+-|.+ ..+.+-++-..++...-.+++|+++++..
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~ 162 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQ 162 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHH
Confidence 345688999999998775 56666666666776755688999987764
No 325
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.57 E-value=35 Score=29.71 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=25.2
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
+.-+.+|+||||.|-...+ +.+-+.++.-|....+++. +|-+..+
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~-t~~~~~l 162 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILA-TTDVEKI 162 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEE-cCChHhh
Confidence 4567999999999854333 2333344444445555554 3433333
No 326
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.55 E-value=29 Score=28.75 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=39.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.-||......+..++..+.+...+++++..-...+.+++.
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d 205 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYAD 205 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 46779999999999999999999999888876444456665544455555544
No 327
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=37.28 E-value=34 Score=28.64 Aligned_cols=53 Identities=8% Similarity=0.201 Sum_probs=41.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||.-.-||......+..++..+.+. -+++++..-...+.+++..
T Consensus 196 ~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~~i~~~~dr 248 (285)
T PRK14254 196 APDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQAARISDK 248 (285)
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhhcCE
Confidence 4678999999999999999999999998887654 4666666655666666654
No 328
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=37.26 E-value=29 Score=27.80 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=38.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l 70 (189)
+.+-+++++||.-.-||......+..++..+.+...+++++..-+..+..+
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~ 210 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYI 210 (243)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhh
Confidence 356789999999999999999999999888764444666655555555554
No 329
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.00 E-value=1.4e+02 Score=28.56 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 164 YLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 164 ~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
.+.+.|.... +...+.++||++|-
T Consensus 509 ~l~~~i~~~~-~~~pgg~lvfFpSy 532 (705)
T TIGR00604 509 NLGELLVEFS-KIIPDGIVVFFPSY 532 (705)
T ss_pred HHHHHHHHHh-hcCCCcEEEEccCH
Confidence 3455554443 23357899999873
No 330
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=36.84 E-value=28 Score=29.29 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=42.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+++++||--.=||......+..++..+.+.-.+++++..-...+.+++...
T Consensus 140 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v 194 (302)
T TIGR01188 140 IHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRI 194 (302)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 4678999999999999999999999988887654457777776666677666443
No 331
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=36.83 E-value=46 Score=26.63 Aligned_cols=46 Identities=26% Similarity=0.276 Sum_probs=33.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCch
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDT 66 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~ 66 (189)
+.+.+++++||--.=||......+..++..+.+.. +++++..-...
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~-~vi~~sh~~~~ 200 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAMKGR-TTIVIAHRLST 200 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCC-EEEEEeCCHHH
Confidence 46679999999999999999999999888775333 45554443333
No 332
>PF13514 AAA_27: AAA domain
Probab=36.74 E-value=53 Score=33.11 Aligned_cols=51 Identities=10% Similarity=0.171 Sum_probs=43.2
Q ss_pred eEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 25 FLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 25 ~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
.+|+|++=.=||......+-.++..+.+..|+|+||+- +++.++++..+.+
T Consensus 1054 P~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch--~~l~~~a~~~~~~ 1104 (1111)
T PF13514_consen 1054 PFILDDIFVNFDDERARAALELLAELSRRRQVIYFTCH--EHLVELAREVFGD 1104 (1111)
T ss_pred cEEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEecc--HHHHHHHHHhcCC
Confidence 48999988888888999999999999999999999874 7788888776544
No 333
>PRK10908 cell division protein FtsE; Provisional
Probab=36.69 E-value=29 Score=27.57 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=38.7
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+.+++||--.-||....+.+..++..+.+..-+++++..-+..+..++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 205 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSY 205 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 36678999999999999988888888887765433456666555555655553
No 334
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=36.55 E-value=30 Score=28.23 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=37.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+.+++||--.-||......+..++..+.+..-+++++..-+..+..++.
T Consensus 168 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d 220 (257)
T PRK10619 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS 220 (257)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 46789999999999999999999999888775433344554444444555443
No 335
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=36.51 E-value=29 Score=33.93 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=13.2
Q ss_pred CceeeEEeccchhhhc
Q psy9740 21 NRIKFLVLDEADRLLS 36 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~ 36 (189)
..-+++|+||||.|.+
T Consensus 439 p~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 439 PSFRDLIIDEAHHLPD 454 (850)
T ss_pred CCCCEEEEECcchHHH
Confidence 3447999999999975
No 336
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=36.41 E-value=28 Score=26.79 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=38.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||.-.=||......+..++..+.+. .-+++++..-+..+.+++..
T Consensus 113 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 167 (180)
T cd03214 113 AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADR 167 (180)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4677999999999999998888888888877542 23556655555555555543
No 337
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=36.18 E-value=41 Score=28.58 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=13.3
Q ss_pred cCceeeEEeccchhhhc
Q psy9740 20 LNRIKFLVLDEADRLLS 36 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~ 36 (189)
.+.-+.+|+||||.|-.
T Consensus 115 ~~~~~vviidea~~l~~ 131 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLSK 131 (355)
T ss_pred cCCceEEEEeChhhcCH
Confidence 35567999999998844
No 338
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.00 E-value=25 Score=28.07 Aligned_cols=54 Identities=15% Similarity=0.224 Sum_probs=40.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.=||......+..++..+.+. -.+++++..-+..+.+++..
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~ 210 (233)
T cd03258 156 ANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDR 210 (233)
T ss_pred hcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 4677899999999999999999998888877543 34666666555566666543
No 339
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.91 E-value=28 Score=27.91 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=39.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||--.-||......+..++..+.+. ..+++++..-...+.+++..
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~ 206 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADR 206 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCE
Confidence 4677899999999999999999999988877542 34666665555555555543
No 340
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=35.86 E-value=39 Score=27.11 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=37.1
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhc
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITK 75 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l 75 (189)
++.+.+++||...=++......+...+..+.+.. + +++.|-..++.+++...+
T Consensus 179 ~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~-~-ii~~~h~~~~~~~~d~i~ 231 (243)
T cd03272 179 DPAPFYLFDEIDAALDAQYRTAVANMIKELSDGA-Q-FITTTFRPELLEVADKFY 231 (243)
T ss_pred CCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCC-E-EEEEecCHHHHhhCCEEE
Confidence 4568999999999999988888888887775543 3 334444455665554443
No 341
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=35.84 E-value=36 Score=27.80 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=40.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+.+++||--.-||......+..++..+.+.. +++++..-...+.+++...
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-tviivsH~~~~~~~~~d~i 217 (258)
T PRK14241 164 AVEPDVLLMDEPCSALDPISTLAIEDLINELKQDY-TIVIVTHNMQQAARVSDQT 217 (258)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCC-EEEEEecCHHHHHHhCCEE
Confidence 46789999999999999999999988888775443 5666665555666666543
No 342
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=35.77 E-value=49 Score=25.31 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=31.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEee
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSA 61 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SA 61 (189)
+.+.+.+++||.-.=||....+.+..++..+.++ -+++++.
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~s 154 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWIT 154 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEe
Confidence 4677899999999999998888888888776544 3444433
No 343
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=35.64 E-value=20 Score=35.03 Aligned_cols=60 Identities=22% Similarity=0.334 Sum_probs=36.0
Q ss_pred eeehHhhHHHHhcC----CCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 2 IATPGRLADHLDTC----NTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 2 V~TPgrl~~ll~~~----~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
|+|-.++..-..+. ..+....-.++|+||||+=.-..+. .|+.++..-.|.+ +||....+
T Consensus 261 lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~----~I~dYFdA~~~gL--TATP~~~~ 324 (875)
T COG4096 261 LSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWS----SILDYFDAATQGL--TATPKETI 324 (875)
T ss_pred EeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhH----HHHHHHHHHHHhh--ccCccccc
Confidence 45555555555442 3456677899999999997644333 5555554334433 67655533
No 344
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=35.55 E-value=35 Score=26.92 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=36.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEeecCCchH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFSATMTDTL 67 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~SATl~~~v 67 (189)
+.+-+++++||.-.-||......+..++..+.+ ...+++++..-...+
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 204 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA 204 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH
Confidence 456789999999999999999999999888765 234566655444434
No 345
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=35.43 E-value=30 Score=27.61 Aligned_cols=53 Identities=15% Similarity=0.247 Sum_probs=39.7
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||.-.=||......+..++..+.+. .-+++++..-...+.+++.
T Consensus 147 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d 200 (230)
T TIGR03410 147 VTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELAD 200 (230)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCC
Confidence 4677999999999999999999999988877542 3466666555555665554
No 346
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.42 E-value=56 Score=28.19 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=13.8
Q ss_pred cCceeeEEeccchhhhc
Q psy9740 20 LNRIKFLVLDEADRLLS 36 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~ 36 (189)
+++-+++++||+|.|-.
T Consensus 106 ~~~~kiviIDE~~~l~~ 122 (367)
T PRK14970 106 TGKYKIYIIDEVHMLSS 122 (367)
T ss_pred cCCcEEEEEeChhhcCH
Confidence 45678999999998854
No 347
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=35.09 E-value=44 Score=27.04 Aligned_cols=52 Identities=13% Similarity=0.212 Sum_probs=37.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+.+++||.-.-||......+..++..+.+.. +++++..-...+.+++.
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-tiii~sH~~~~~~~~~d 213 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELKKDY-TIVIVTHNMQQASRISD 213 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCC-eEEEEEeCHHHHHhhCC
Confidence 35679999999999999998888888887775544 45554444444554443
No 348
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=35.05 E-value=37 Score=27.59 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=40.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||-..=||......+..++..+.+. -+++++..-...+.+++..
T Consensus 165 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~tvii~sh~~~~~~~~~d~ 217 (253)
T PRK14261 165 AVNPEVILMDEPCSALDPIATAKIEDLIEDLKKE-YTVIIVTHNMQQAARVSDY 217 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhC-ceEEEEEcCHHHHHhhCCE
Confidence 4678999999999999999888998888877654 4666666655666666544
No 349
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=35.04 E-value=36 Score=28.08 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=40.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+-+++++||--.-||......+..++..+.+. -+++++..-...+.+++..
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~-~tiiivtH~~~~~~~~~d~ 231 (267)
T PRK14235 179 AVSPEVILMDEPCSALDPIATAKVEELIDELRQN-YTIVIVTHSMQQAARVSQR 231 (267)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcC-CeEEEEEcCHHHHHhhCCE
Confidence 3567899999999999999999999988887554 4677766655566665543
No 350
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=34.99 E-value=34 Score=27.60 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=40.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||--.=||......+..++..+.+. ..+++++.--+..+.+++..
T Consensus 169 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 223 (236)
T cd03267 169 LHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARR 223 (236)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCE
Confidence 3567899999999999999999999998887543 34666666555556665543
No 351
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.99 E-value=28 Score=27.43 Aligned_cols=54 Identities=17% Similarity=0.179 Sum_probs=39.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||.-.=||......+..++..+.+. ..+++++..-...+.+++..
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (214)
T cd03297 147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADR 201 (214)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCE
Confidence 4677999999999999998888888888776543 34667766655556555543
No 352
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=34.70 E-value=52 Score=27.53 Aligned_cols=41 Identities=24% Similarity=0.287 Sum_probs=32.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
+.+-+.+++||+-.-+|......+..++.....++.+++.|
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~is 194 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSE 194 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 46778999999999999998899998888765554444444
No 353
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=34.58 E-value=64 Score=25.23 Aligned_cols=54 Identities=7% Similarity=0.113 Sum_probs=25.3
Q ss_pred ceeeEEeccchhhhccccH--HHHH---HHHhhCCCCCcEEEEeecCCchHHHHHHhhc
Q psy9740 22 RIKFLVLDEADRLLSGIFD--EQMR---TIFGAVPKQKQTLLFSATMTDTLEQVKSITK 75 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~--~~i~---~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l 75 (189)
.=..+|+|||+..+...-. .... ..+....+.---+++..--+..+....+.+.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lv 137 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLV 137 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHH
Confidence 4468999999999965422 2223 3344444433445554444455555554443
No 354
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=34.54 E-value=52 Score=31.35 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=25.2
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHH
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~ 68 (189)
+.-+.+||||||.|-... .+.+-++++--|...-+++ .+|-+..+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL-~Tt~~~kLl 163 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLL-ATTDPQKLP 163 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEE-ecCCccccc
Confidence 456799999999875433 3334334444333333333 355555443
No 355
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=34.47 E-value=31 Score=29.08 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=42.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.=||......+..++..+.+..-+++++..-...+.+++..
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~ 204 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDR 204 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 467899999999999999999999998887754445777777766677766644
No 356
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=34.40 E-value=35 Score=26.97 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=36.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCC-C--CCcEEEEeecCCchHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVP-K--QKQTLLFSATMTDTLEQ 69 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~-~--~~Q~il~SATl~~~v~~ 69 (189)
+.+.+++++||...=++......+..++..+. . ..+++++|.--...+..
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~ 181 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLAS 181 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccccc
Confidence 46889999999999999988888877665543 2 45788887655454443
No 357
>PHA02562 46 endonuclease subunit; Provisional
Probab=34.17 E-value=50 Score=30.13 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=31.9
Q ss_pred CceeeEEeccc-hhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 21 NRIKFLVLDEA-DRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 21 ~~l~~lVlDEa-D~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
.+.+++++||. |.=++......+..++..+ ++.++++.|--
T Consensus 495 ~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~iiiish~ 536 (562)
T PHA02562 495 VDTNLLILDEVFDGALDAEGTKALLSILDSL-KDTNVFVISHK 536 (562)
T ss_pred CCcCeEEEecccCcccchhHHHHHHHHHHhC-CCCeEEEEECc
Confidence 36789999998 7777888888888888888 66676666554
No 358
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=34.12 E-value=68 Score=30.24 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=24.1
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
...-+.+||||+|.|-.. -.+.+.+.++.-|....+||.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~-a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHH-HHHHHHHHHHhCCCCeEEEEEe
Confidence 456689999999998432 2333444444445555555543
No 359
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=34.05 E-value=58 Score=28.12 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=24.7
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEee
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSA 61 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SA 61 (189)
+.-+.+||||||.|-.. -.+.+-++++-=|.+.-+++.|.
T Consensus 112 g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 112 GIAQVVIVDPADAINRA-ACNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred CCcEEEEeccHhhhCHH-HHHHHHHHhhCCCCCCeEEEEEC
Confidence 56789999999999433 33444444444345555555543
No 360
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=34.02 E-value=28 Score=27.36 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=38.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~ 72 (189)
+.+-+++++||--.-||......+..++..+.+. ..+++++..-+..+.+++.
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d 199 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMAD 199 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 3567899999999999999899988888776532 3466666555555555554
No 361
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.99 E-value=49 Score=26.77 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=36.1
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVK 71 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~ 71 (189)
+.+.+++++||-..=||......+.+++..+.+.. +++++..-...+.+++
T Consensus 158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~-tiii~tH~~~~~~~~~ 208 (246)
T PRK14269 158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSHNL-SMIMVTHNMQQGKRVA 208 (246)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCC-EEEEEecCHHHHHhhC
Confidence 46789999999999999988888888887765443 4555444334444443
No 362
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=33.93 E-value=55 Score=25.77 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=33.1
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
+.+.+++++||--.=||......+..++..+.+. -+++++..
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH 197 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITH 197 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeC
Confidence 4677999999999999999999999998887655 34555443
No 363
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=33.91 E-value=53 Score=26.05 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=33.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecC
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl 63 (189)
+.+.+++++||--.-||......+..++..+.+. .+++++..-
T Consensus 166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sh~ 208 (226)
T cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPER-RTVLVIAHR 208 (226)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCC-CEEEEEECC
Confidence 4677999999999999999999998888877654 355554433
No 364
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.61 E-value=72 Score=28.23 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=22.8
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecC
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl 63 (189)
.-..+++||+|+|-. .+...++..+. +.+++++.||-
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le-~~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVE-DGTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhh-cCcEEEEEeCC
Confidence 456899999999743 22334444443 34566676664
No 365
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=33.58 E-value=36 Score=27.68 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=39.4
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+-+++++||--.=||......+..++..+.+...+++++..-...+.+++...
T Consensus 151 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i 203 (248)
T PRK03695 151 AGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRV 203 (248)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE
Confidence 45899999999999999999999998877544456666655555566665433
No 366
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=33.38 E-value=51 Score=24.45 Aligned_cols=48 Identities=25% Similarity=0.269 Sum_probs=34.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l 70 (189)
+.+.+++++||...=+|......+..+++.+. . +++++.--...+.++
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~-til~~th~~~~~~~~ 133 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP--G-TVILVSHDRYFLDQV 133 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC--C-EEEEEECCHHHHHHh
Confidence 46678999999999999988888888887762 3 555544433444444
No 367
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.34 E-value=52 Score=30.67 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=25.1
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
.++-+.+|+||||+|=. +-.+.+.+.++.-|+...+++.+
T Consensus 117 ~g~~kViIIDEa~~ls~-~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSK-QSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccH-HHHHHHHHHHhcCCCCceEEEEE
Confidence 34567999999999744 34445555566555555555443
No 368
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.26 E-value=32 Score=29.48 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=38.6
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||.-.-||......+..++..+...-.++++++.-...+.+++..
T Consensus 192 ~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adr 245 (320)
T PRK13631 192 AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADE 245 (320)
T ss_pred HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence 467899999999999999999999988877654334555555444445555433
No 369
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=33.24 E-value=55 Score=27.93 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=16.0
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHh
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFG 48 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~ 48 (189)
....+||||+|.+... -...+..++.
T Consensus 129 ~~~vlvIDE~d~L~~~-~~~~L~~l~~ 154 (365)
T TIGR02928 129 DSLIIVLDEIDYLVGD-DDDLLYQLSR 154 (365)
T ss_pred CeEEEEECchhhhccC-CcHHHHhHhc
Confidence 3457899999999732 1233444443
No 370
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=33.19 E-value=57 Score=31.43 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=29.7
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCC-CCCcEEEEeecCCc
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVP-KQKQTLLFSATMTD 65 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~-~~~Q~il~SATl~~ 65 (189)
....+|+|||..+=+ +.+..|+..+. +++++++.|.|-+.
T Consensus 352 tfDLLIVDEAqFIk~----~al~~ilp~l~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 352 DFNLLFVDEANFIRP----DAVQTIMGFLNQTNCKIIFVSSTNTG 392 (738)
T ss_pred cccEEEEechhhCCH----HHHHHHHHHHhccCccEEEEecCCCC
Confidence 577999999998844 45566665554 58999999988544
No 371
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=33.11 E-value=96 Score=26.10 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=39.0
Q ss_pred CceeeEEeccchhhh-ccccHHHHHHHHhhCCCCCcEEEEeecCC-chHHHHHHhhccc
Q psy9740 21 NRIKFLVLDEADRLL-SGIFDEQMRTIFGAVPKQKQTLLFSATMT-DTLEQVKSITKKQ 77 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll-~~~f~~~i~~Il~~l~~~~Q~il~SATl~-~~v~~l~~~~l~~ 77 (189)
.+..++++|-+=++. +....+++..+++...+..-.+..|||.. .+..+.++.|-.-
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~ 211 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDI 211 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCC
Confidence 357899999998875 34456666677665544433456799875 4777888777554
No 372
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=33.04 E-value=40 Score=27.86 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=39.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||--.-||......+..++..+.+..-+++++..-...+.+++..
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~ 211 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDY 211 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 356799999999999999999999998887754334566665555556665543
No 373
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.91 E-value=43 Score=27.15 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=39.6
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
..+-+.+++||--.=||......+..++..+.+. -+++++..-+..+.+++..
T Consensus 165 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~tiii~sH~~~~~~~~~d~ 217 (253)
T PRK14267 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELKKE-YTIVLVTHSPAQAARVSDY 217 (253)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhC-CEEEEEECCHHHHHhhCCE
Confidence 4677999999999999999888888888877554 4566666555556666544
No 374
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=32.90 E-value=14 Score=21.00 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=15.4
Q ss_pred EeccchhhhccccHHHHHHHH
Q psy9740 27 VLDEADRLLSGIFDEQMRTIF 47 (189)
Q Consensus 27 VlDEaD~ll~~~f~~~i~~Il 47 (189)
++||.|.+|+.+-.+.++...
T Consensus 8 lLDeId~vLe~NAe~FV~~fV 28 (33)
T TIGR03687 8 LLDEIDGVLESNAEEFVRGFV 28 (33)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 478888888887777666543
No 375
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=32.87 E-value=31 Score=27.60 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=39.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+.+++||.-.=||......+..++..+.+ ...+++++..-...+..+++..
T Consensus 141 ~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 196 (230)
T TIGR02770 141 LLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEV 196 (230)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 366799999999999999888888888877654 2446666665555566555433
No 376
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=32.71 E-value=44 Score=27.07 Aligned_cols=53 Identities=13% Similarity=0.245 Sum_probs=39.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.=||......+..++..+.+. .+++++..-...+.+++..
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tvii~tH~~~~~~~~~d~ 217 (253)
T PRK14242 165 AVEPEVLLMDEPASALDPIATQKIEELIHELKAR-YTIIIVTHNMQQAARVSDV 217 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CeEEEEEecHHHHHHhCCE
Confidence 3667999999999999999999999998887544 4566655544555555543
No 377
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=32.54 E-value=56 Score=25.55 Aligned_cols=39 Identities=28% Similarity=0.295 Sum_probs=30.1
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEE
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLF 59 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~ 59 (189)
+.+.+++++||...=||......+..++..+.+.. ++++
T Consensus 141 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-tiii 179 (207)
T cd03369 141 LKRPRVLVLDEATASIDYATDALIQKTIREEFTNS-TILT 179 (207)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCC-EEEE
Confidence 46779999999999999988888888887764433 4444
No 378
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.53 E-value=32 Score=27.25 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=40.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.-||......+..++..+.+ ...+++++..-+..+.+++..
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADR 201 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCE
Confidence 356799999999999999999999888877643 344677766666666666543
No 379
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=32.43 E-value=42 Score=26.30 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=34.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCc
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTD 65 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~ 65 (189)
+.+.+.+++||...=||......+..++..+.+...+++++..-..
T Consensus 145 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 145 LTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 4678999999999999999999999888876543345555544333
No 380
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.29 E-value=47 Score=31.47 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=25.7
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
++-+.+||||+|.|-... .+.+.+.++.-|....++ +.+|-+..+
T Consensus 123 g~~KV~IIDEvh~Ls~~a-~NaLLKtLEEPP~~~~fI-L~Ttd~~ki 167 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTA-FNAMLKTLEEPPEYLKFV-LATTDPQKV 167 (618)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHhcccCCCCeEEE-EEECCchhh
Confidence 456899999999885443 333334444434444444 444655544
No 381
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=32.25 E-value=33 Score=27.16 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=38.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~ 72 (189)
+.+-+++++||--.=||......+..++..+.+. .-+++++..-...+..++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d 214 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIAD 214 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 4667899999999999998888888888777543 3466666655555555543
No 382
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=32.24 E-value=33 Score=28.09 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=38.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.-||......+..++..+.+. .-+++++..-...+.+++.
T Consensus 136 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d 189 (251)
T PRK09544 136 LNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTD 189 (251)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 4667899999999999999999999888776543 3456665554455555544
No 383
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.17 E-value=46 Score=27.83 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=39.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+-+++++||--.=||......+..++..+.+. -+++++..-...+.+++...
T Consensus 198 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~-~tvIivsH~~~~~~~~~d~i 251 (286)
T PRK14275 198 AVEPEILLLDEPTSALDPKATAKIEDLIQELRGS-YTIMIVTHNMQQASRVSDYT 251 (286)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHhCCEE
Confidence 4667999999999999999888888888877554 45666665555555555433
No 384
>PF05729 NACHT: NACHT domain
Probab=32.13 E-value=79 Score=22.98 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=26.4
Q ss_pred eEEeccchhhhccc-------cHHHHHHHHhh-CCCCCcEEEEeecC
Q psy9740 25 FLVLDEADRLLSGI-------FDEQMRTIFGA-VPKQKQTLLFSATM 63 (189)
Q Consensus 25 ~lVlDEaD~ll~~~-------f~~~i~~Il~~-l~~~~Q~il~SATl 63 (189)
++|+|-.|.+.+.. +.+.+..++.. ++++..++++|.+-
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~ 130 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPR 130 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCC
Confidence 48999999998743 34456666655 55677777776643
No 385
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=32.07 E-value=40 Score=26.26 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=32.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCC
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMT 64 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~ 64 (189)
+.+.+++++||.-.=||......+..++..+.+..-+++++..-+
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 143 LSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 467899999999999999888888888876643333555544433
No 386
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.93 E-value=34 Score=27.36 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=39.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||.-.=||......+..++..+.+ ...+++++..-...+.+++..
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~ 214 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADR 214 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 356799999999999999999999988887753 234566665555555555543
No 387
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.87 E-value=78 Score=28.85 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=13.1
Q ss_pred cCceeeEEeccchhhh
Q psy9740 20 LNRIKFLVLDEADRLL 35 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll 35 (189)
.++-+.+++||+|.|-
T Consensus 115 ~~~~kVvIIDE~h~Lt 130 (472)
T PRK14962 115 EGKYKVYIIDEVHMLT 130 (472)
T ss_pred cCCeEEEEEEChHHhH
Confidence 3566899999999984
No 388
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=31.66 E-value=36 Score=28.26 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=40.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+.+++||.-.-||......+..++..+.+. .-+++++..-...+.+++...
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv 208 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYI 208 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 4667899999999999999999998888877543 335666665556666665443
No 389
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.64 E-value=33 Score=27.63 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=40.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.-||......+..++..+.+. ..+++++..-...+.+++..
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~ 206 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADR 206 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 3667899999999999998888888888777542 34677766655556655543
No 390
>PRK09087 hypothetical protein; Validated
Probab=31.61 E-value=53 Score=26.60 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=27.4
Q ss_pred eeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEeecCCch
Q psy9740 24 KFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFSATMTDT 66 (189)
Q Consensus 24 ~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~SATl~~~ 66 (189)
..+++|++|.+- .-++.+-.+++.+.. ++++++.|.+-|+.
T Consensus 89 ~~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 89 GPVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred CeEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChHH
Confidence 479999999762 335667777776664 56666666655554
No 391
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.60 E-value=53 Score=26.52 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=39.1
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||.-.=||......+..++..+.+. .+++++..-+..+.+++..
T Consensus 162 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~tiii~sH~~~~~~~~~d~ 214 (250)
T PRK14247 162 AFQPEVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVTHFPQQAARISDY 214 (250)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCE
Confidence 4678999999999999999999999888887554 4566655544555555543
No 392
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=31.59 E-value=92 Score=26.98 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=22.1
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEE
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLF 59 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~ 59 (189)
-+.-+.+|+|+||.|=.. -.+.+-++++-=|++.-+++.
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~ 143 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQ 143 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEE
Confidence 456789999999999433 333333333332334434443
No 393
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=31.43 E-value=46 Score=25.87 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=32.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
+.+.+++++||--.-||......+..++..+.+...+++++..
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 192 (206)
T TIGR03608 150 LKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTH 192 (206)
T ss_pred HcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4678999999999999999889988888776543345555443
No 394
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=31.38 E-value=53 Score=28.18 Aligned_cols=45 Identities=9% Similarity=0.176 Sum_probs=26.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCch
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDT 66 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~ 66 (189)
.+.-+.+|+||||.|=.. -.+.+-+.++.-|+....++ .++-+..
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il-~t~~~~~ 152 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAIL-LTENKHQ 152 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEE-EeCChHh
Confidence 456689999999998432 34445555555444554554 4443333
No 395
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=31.34 E-value=48 Score=25.75 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=33.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCc
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTD 65 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~ 65 (189)
+.+.+++++||...=+|......+..++....+...+++++.--..
T Consensus 139 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 139 ACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 4677999999999999998888888888654334445555554333
No 396
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.32 E-value=53 Score=26.53 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=40.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+-+.+++||.-.-+|......+..++..+.+. -+++++..-...+.+.++.
T Consensus 162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tiii~sh~~~~~~~~~~~ 214 (250)
T PRK14266 162 AVSPEVILMDEPCSALDPISTTKIEDLIHKLKED-YTIVIVTHNMQQATRVSKY 214 (250)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcC-CeEEEEECCHHHHHhhcCE
Confidence 3677999999999999999899999988877544 3666666655666655543
No 397
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.10 E-value=64 Score=25.72 Aligned_cols=47 Identities=26% Similarity=0.320 Sum_probs=35.6
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
..+.+++++||--.=||......+..++..+.+ ..+++++..-...+
T Consensus 153 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~ 199 (236)
T cd03253 153 LKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTI 199 (236)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHH
Confidence 467799999999999999988888888887766 44555555444443
No 398
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.09 E-value=56 Score=29.90 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=22.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecC
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl 63 (189)
.+.-+.+|+||||.|-... .+.+...+...|... ++++.+|-
T Consensus 117 ~~~~KVvIIDEad~Lt~~a-~naLLk~LEepp~~~-v~Il~tt~ 158 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEA-FNALLKTLEEPPPRT-IFILCTTE 158 (486)
T ss_pred cCCeeEEEEEChhhcCHHH-HHHHHHHHhcCCCCe-EEEEEECC
Confidence 3556899999999774332 333333444433333 34444443
No 399
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.08 E-value=57 Score=29.98 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=18.1
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCC
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVP 51 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~ 51 (189)
++.-+.+||||+|.|-. .....+++.+.
T Consensus 114 ~~~~kVVIIDEad~ls~----~a~naLLk~LE 141 (504)
T PRK14963 114 RGGRKVYILDEAHMMSK----SAFNALLKTLE 141 (504)
T ss_pred cCCCeEEEEECccccCH----HHHHHHHHHHH
Confidence 45678999999998732 33444455443
No 400
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=31.05 E-value=39 Score=26.77 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=32.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEeec
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFSAT 62 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~SAT 62 (189)
..+.+++++||.-.-||......+..+++.+.+ ...+++++..
T Consensus 157 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh 200 (220)
T TIGR02982 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH 200 (220)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 456799999999999999999999988887754 2344444443
No 401
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.05 E-value=88 Score=27.71 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=33.9
Q ss_pred cCceeeEEeccchhhh-ccccHHHHHHHHhhCCCCCcEEEEeecCCch-HHHHHHhhcc
Q psy9740 20 LNRIKFLVLDEADRLL-SGIFDEQMRTIFGAVPKQKQTLLFSATMTDT-LEQVKSITKK 76 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll-~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~-v~~l~~~~l~ 76 (189)
+.+.++++||++-..- +....+++..+........-.+.+|||...+ +.+.++.|..
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~ 271 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRS 271 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHH
Confidence 5677899999997663 2234444554433222223356679998554 4556666643
No 402
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=31.00 E-value=34 Score=29.05 Aligned_cols=54 Identities=22% Similarity=0.218 Sum_probs=38.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
..+.+++++||.-.-||......+..++..+...-.+++++..-...+.+++..
T Consensus 181 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adr 234 (305)
T PRK13651 181 AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234 (305)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCE
Confidence 356789999999999999988888888877754344566655444455555543
No 403
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=31.00 E-value=2.1e+02 Score=20.77 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=40.8
Q ss_pred HHHHhhcCCcceeEeecCccccchhhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy9740 123 AQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDT 187 (189)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns 187 (189)
.+|...+.-..|+++.-..... .+.+...-+.++......-+...|+....-.+....-+|||.
T Consensus 15 ~~ir~kyp~~iPVIvE~~~~~~-~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~ 78 (112)
T cd01611 15 ERIRAKYPDRIPVIVERYPKSD-LPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNN 78 (112)
T ss_pred HHHHHHCCCceEEEEEEcCCCC-cccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECC
Confidence 3444444445565555433332 344544444588888988899999877655667778888875
No 404
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.00 E-value=72 Score=30.13 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=27.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~ 68 (189)
.+.=+.+|+||||.|-. .-.+.+..+++..|... ++++.+|-+..+.
T Consensus 119 ~~~~KVvIIdea~~Ls~-~a~naLLK~LEepp~~t-ifIL~tt~~~kIl 165 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ-AAFNAFLKTLEEPPSYA-IFILATTEKHKIL 165 (614)
T ss_pred cCCcEEEEEECcccCCH-HHHHHHHHHHhCCCCCe-EEEEEeCCchhch
Confidence 45678999999999943 23444555555544443 4445555444433
No 405
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=30.97 E-value=33 Score=28.28 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=38.7
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+.+++||--.-||......+..++..+.+. .-+++++..-...+..++.
T Consensus 165 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d 218 (267)
T PRK15112 165 ILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISD 218 (267)
T ss_pred HhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcC
Confidence 4677999999999999999888888888776542 3456665555555555554
No 406
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=30.96 E-value=40 Score=26.35 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=38.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCC-cEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQK-QTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~-Q~il~SATl~~~v~~l~~~ 73 (189)
+.+-+.+++||--.-||......+..++..+.+.. .+++++..-...+..++..
T Consensus 87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 141 (177)
T cd03222 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDR 141 (177)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCE
Confidence 45668999999999999988888888887764432 4666666555555555543
No 407
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.85 E-value=52 Score=26.65 Aligned_cols=52 Identities=12% Similarity=0.217 Sum_probs=37.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+.+++||.-.=||......+..++..+.+.. +++++..-...+.+++.
T Consensus 164 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~-tiiivsH~~~~~~~~~d 215 (252)
T PRK14256 164 AVKPEVILMDEPASALDPISTLKIEELIEELKEKY-TIIIVTHNMQQAARVSD 215 (252)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC-cEEEEECCHHHHHhhCC
Confidence 35678999999999999998889988888876554 45555544444444443
No 408
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.83 E-value=43 Score=27.12 Aligned_cols=53 Identities=13% Similarity=0.203 Sum_probs=38.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||--.=||......+..++..+.+.. +++++..-...+.+++..
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~-tiiivsH~~~~~~~~~d~ 215 (251)
T PRK14270 163 AVKPDVILMDEPTSALDPISTLKIEDLMVELKKEY-TIVIVTHNMQQASRVSDY 215 (251)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC-eEEEEEcCHHHHHHhcCE
Confidence 36789999999999999998888888887775543 455555544555555543
No 409
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.75 E-value=39 Score=28.01 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=38.6
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||.-.-||......+..++..+.+...+++++..-...+.+++..
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~ 207 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQ 207 (274)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence 466799999999999999999999988887754334555544444445555543
No 410
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=30.68 E-value=48 Score=22.77 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=20.6
Q ss_pred ccCceeeEEeccchhhhccccHHHHHHHH
Q psy9740 19 SLNRIKFLVLDEADRLLSGIFDEQMRTIF 47 (189)
Q Consensus 19 ~l~~l~~lVlDEaD~ll~~~f~~~i~~Il 47 (189)
.-..+++++||||-.=+|......+-.++
T Consensus 60 ~~~~~~~l~lDEaF~~lD~~~~~~~~~~l 88 (90)
T PF13558_consen 60 RGDSPRLLFLDEAFSKLDEENIERLMDLL 88 (90)
T ss_dssp S-TTBSEEEEESTTTTCGHHHHHHHHHHH
T ss_pred CCCCcCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 45679999999997777776666555544
No 411
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.51 E-value=33 Score=28.63 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=39.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||-..-||......+..++..+.+ ...+++++.--...+.+++..
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dr 215 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADE 215 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 366799999999999999999999999988753 234666655444455555543
No 412
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=30.43 E-value=94 Score=27.10 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=13.9
Q ss_pred cCceeeEEeccchhhhc
Q psy9740 20 LNRIKFLVLDEADRLLS 36 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~ 36 (189)
-+.-+.+|||+||.|-.
T Consensus 130 ~~~~kV~iI~~ae~m~~ 146 (342)
T PRK06964 130 RGGARVVVLYPAEALNV 146 (342)
T ss_pred cCCceEEEEechhhcCH
Confidence 36678999999999943
No 413
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=30.30 E-value=72 Score=21.78 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=17.0
Q ss_pred eeeEEeccchhhhccccHHHHH
Q psy9740 23 IKFLVLDEADRLLSGIFDEQMR 44 (189)
Q Consensus 23 l~~lVlDEaD~ll~~~f~~~i~ 44 (189)
...+++||++.+..........
T Consensus 79 ~~viiiDei~~~~~~~~~~~~~ 100 (148)
T smart00382 79 PDVLILDEITSLLDAEQEALLL 100 (148)
T ss_pred CCEEEEECCcccCCHHHHHHHH
Confidence 5899999999998776554443
No 414
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.24 E-value=37 Score=27.30 Aligned_cols=55 Identities=20% Similarity=0.153 Sum_probs=40.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+++++||--.=||......+..++..+... ..+++++..-+..+.+++...
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i 200 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKV 200 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 4677999999999999999999999888876532 446666665555566655433
No 415
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.11 E-value=56 Score=26.41 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=39.6
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||--.=||......+..++..+.+. -+++++..-...+.+++..
T Consensus 164 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~tiii~sH~~~~~~~~~d~ 216 (252)
T PRK14272 164 AVEPEILLMDEPTSALDPASTARIEDLMTDLKKV-TTIIIVTHNMHQAARVSDT 216 (252)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHhCCE
Confidence 3667899999999999999899998888887654 4566665555556655543
No 416
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.06 E-value=49 Score=25.97 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=38.6
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecC-CchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATM-TDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl-~~~v~~l~~~ 73 (189)
+.+.+++++||--.-+|......+..++..+.+. .-++++..+- ...+.+++..
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~ 189 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDK 189 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCe
Confidence 4677899999999999999999999888887543 2344554443 3556665543
No 417
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.02 E-value=56 Score=26.46 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=37.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+.+++||--.=||......+..++..+.++ -+++++..-...+.+++.
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiiisH~~~~~~~~~d 216 (251)
T PRK14244 165 AVKPTMLLMDEPCSALDPVATNVIENLIQELKKN-FTIIVVTHSMKQAKKVSD 216 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHhhcC
Confidence 4677999999999999998888888888777544 456665554445555443
No 418
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=29.98 E-value=74 Score=32.01 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=25.8
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCC-CCCcEEEEeec
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVP-KQKQTLLFSAT 62 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~-~~~Q~il~SAT 62 (189)
+.+..|||||+|.|... -.+.+..+++... ...++++..++
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHHHhhccCCeEEEEEec
Confidence 34568999999999865 3455666665422 34556554444
No 419
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.95 E-value=53 Score=26.57 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=37.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||...=||......+..++..+.+. -+++++..-+..+.+++.
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~tiiiisH~~~~~~~~~d 214 (251)
T PRK14251 163 AVRPKVVLLDEPTSALDPISSSEIEETLMELKHQ-YTFIMVTHNLQQAGRISD 214 (251)
T ss_pred hcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcC-CeEEEEECCHHHHHhhcC
Confidence 4678999999999999998888888888776444 355555544444555443
No 420
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=29.91 E-value=49 Score=27.06 Aligned_cols=52 Identities=10% Similarity=0.120 Sum_probs=38.7
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCC-CCCcEEEEeecCCchHHHHHHh
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVP-KQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+++++||--.-||......+..++..+. +...+++++..-...+.+++..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 210 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADR 210 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCE
Confidence 668999999999999998888888887765 3345666666555556666544
No 421
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.84 E-value=50 Score=27.42 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=39.7
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+.+++||.-.=||......+..++..+.+.. +++++..-...+.+++...
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-tiiivsH~~~~~~~~~dri 232 (276)
T PRK14271 179 AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL-TVIIVTHNLAQAARISDRA 232 (276)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHhCCEE
Confidence 35678999999999999988888888888775543 5566555555566655433
No 422
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.83 E-value=59 Score=29.87 Aligned_cols=44 Identities=14% Similarity=0.235 Sum_probs=22.6
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
.-+.+||||||.|-.. -.+.+-++++. |...-++++.+|-+..+
T Consensus 121 ~~KV~IIDEah~Ls~~-A~NALLKtLEE-Pp~~viFILaTte~~kI 164 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQ-SFNALLKTLEE-PPAHIVFILATTEFHKI 164 (484)
T ss_pred CCEEEEEechhhcCHH-HHHHHHHHhhc-CCCceEEEeecCChhhc
Confidence 4578999999987433 33333333333 22222333445544444
No 423
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=29.79 E-value=94 Score=24.00 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=24.6
Q ss_pred CceeeEEeccchhhh--ccccHHHHHHHHhhCCCCCcEEEEeecCCch
Q psy9740 21 NRIKFLVLDEADRLL--SGIFDEQMRTIFGAVPKQKQTLLFSATMTDT 66 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll--~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~ 66 (189)
...+++|+||.=.|= ..+|.+.+..++. +++.++ ||++..
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi---~vv~~~ 135 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD---SNKPVI---GVVHKR 135 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC---TTSEEE---EE--SS
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc---CCCcEE---EEEecC
Confidence 577899999999994 4569999999988 333333 555555
No 424
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.79 E-value=55 Score=26.43 Aligned_cols=53 Identities=11% Similarity=0.212 Sum_probs=39.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||-..=||......+..++..+.+. -+++++..-+..+.+++..
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~tili~sH~~~~~~~~~d~ 214 (250)
T PRK14262 162 AVEPEVILLDEPTSALDPIATQRIEKLLEELSEN-YTIVIVTHNIGQAIRIADY 214 (250)
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcC-cEEEEEeCCHHHHHHhCCE
Confidence 4677999999999999999888998888877554 4666666555556665543
No 425
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.78 E-value=34 Score=28.64 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=39.7
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||.-.-||......+..++..+.+. -.+++++..-...+.+++..
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~dr 215 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQ 215 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4678999999999999999999999988887543 34566655444555555543
No 426
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.52 E-value=54 Score=27.18 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=40.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+++++||--.=||......+..++..+.+. -+++++..-...+.+++...
T Consensus 177 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~tiii~sH~~~~~~~~~d~i 230 (274)
T PRK14265 177 AMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ-YTIIMVTHNMQQASRVADWT 230 (274)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEE
Confidence 4678999999999999999999999998877554 35666555555566665433
No 427
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.44 E-value=40 Score=27.63 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=39.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||.-.-||......+..++..+.. ..-++++++.-+..+.++++.
T Consensus 166 ~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~ 220 (261)
T PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDF 220 (261)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCE
Confidence 466799999999999999988888888877642 233566656555666666544
No 428
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=29.31 E-value=69 Score=31.00 Aligned_cols=30 Identities=37% Similarity=0.612 Sum_probs=19.6
Q ss_pred ehHhhHHHHhcCCCcccCceeeEEeccchhhhcc
Q psy9740 4 TPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSG 37 (189)
Q Consensus 4 TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~ 37 (189)
.||++...+...+. .+ ..+++||+|.+...
T Consensus 400 ~~g~i~~~l~~~~~--~~--~villDEidk~~~~ 429 (775)
T TIGR00763 400 MPGRIIQGLKKAKT--KN--PLFLLDEIDKIGSS 429 (775)
T ss_pred CCchHHHHHHHhCc--CC--CEEEEechhhcCCc
Confidence 47777776654111 11 27899999999753
No 429
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.21 E-value=53 Score=26.90 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=36.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVK 71 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~ 71 (189)
+.+.+.+++||--.-||......+..++..+.+. -+++++..-...+.+++
T Consensus 177 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~tiiivth~~~~~~~~~ 227 (265)
T PRK14252 177 ATDPEILLFDEPTSALDPIATASIEELISDLKNK-VTILIVTHNMQQAARVS 227 (265)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CEEEEEecCHHHHHHhC
Confidence 4677899999999999998888888888877554 34555444334444444
No 430
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.15 E-value=41 Score=27.77 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=40.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.=||......+..++..+.+. ..+++++..-...+.+++..
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~ 230 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDR 230 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 4677999999999999999999999988776532 45677766655556655544
No 431
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=29.01 E-value=98 Score=26.38 Aligned_cols=16 Identities=13% Similarity=0.493 Sum_probs=13.1
Q ss_pred CceeeEEeccchhhhc
Q psy9740 21 NRIKFLVLDEADRLLS 36 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~ 36 (189)
+.-+.+|||+||+|-.
T Consensus 103 ~~~kV~II~~ad~m~~ 118 (290)
T PRK07276 103 GKQQVFIIKDADKMHV 118 (290)
T ss_pred CCcEEEEeehhhhcCH
Confidence 4568999999999943
No 432
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.74 E-value=45 Score=27.87 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=40.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.=||......+..++..+.+.--+++++..-...+.+++..
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~ 214 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADD 214 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 356789999999999999888899998888754444666666555556666544
No 433
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=28.73 E-value=19 Score=30.92 Aligned_cols=46 Identities=26% Similarity=0.369 Sum_probs=26.9
Q ss_pred ehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhC
Q psy9740 4 TPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAV 50 (189)
Q Consensus 4 TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l 50 (189)
|-|.+.+........-...++.+++||||+|.-.+ .+.++++....
T Consensus 147 ~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~a-le~lr~i~d~~ 192 (297)
T COG2842 147 TDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRA-LEELRRIHDKT 192 (297)
T ss_pred cchhHHHHHHHHHHHHccCcceeeeehhhccChHH-HHHHHHHHHhh
Confidence 34444444433222225778999999999996443 34455555543
No 434
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=28.69 E-value=50 Score=25.76 Aligned_cols=41 Identities=22% Similarity=0.141 Sum_probs=31.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEe
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFS 60 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~S 60 (189)
..+.+++++||.-.-||......+..++..+.+ ...+++.|
T Consensus 143 ~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 184 (200)
T PRK13540 143 MSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTS 184 (200)
T ss_pred hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 467789999999999999988888888877643 34444443
No 435
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=28.15 E-value=73 Score=24.06 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=30.5
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhh-CCCCCcEEEEeecCCchHHHHHH
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGA-VPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~-l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
++..++++||...=++......+...+.. ..+..+++ + +|--.+..+.+.
T Consensus 98 ~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vi-i-~TH~~~~~~~~d 148 (162)
T cd03227 98 KPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI-V-ITHLPELAELAD 148 (162)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEE-E-EcCCHHHHHhhh
Confidence 46789999999999988766666555443 33334333 3 454444444443
No 436
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=28.12 E-value=58 Score=26.60 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=39.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||.-.=||......+..++..+.+. -+++++..-...+.+++..
T Consensus 172 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~tiii~sH~~~~~~~~~d~ 224 (260)
T PRK10744 172 AIRPEVLLLDEPCSALDPISTGRIEELITELKQD-YTVVIVTHNMQQAARCSDY 224 (260)
T ss_pred HCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHhCCE
Confidence 4678999999999999998888888888777543 3566666555556555543
No 437
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=28.11 E-value=77 Score=27.35 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=21.6
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEE
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLL 58 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il 58 (189)
.+.-+.+||||||.|=.. -.+.+-++++-=|.+.-+++
T Consensus 104 ~~~~kv~iI~~a~~m~~~-aaNaLLK~LEEPp~~~~fiL 141 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRN-AANALLKSLEEPSGDTVLLL 141 (328)
T ss_pred cCCCeEEEECChhhCCHH-HHHHHHHHHhCCCCCeEEEE
Confidence 356788999999999443 33333334444333343343
No 438
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=27.98 E-value=72 Score=31.26 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=28.8
Q ss_pred ceeeEEeccchhhhcccc---HHHHHHHHhhCCCCCcEEEEeecCCchHH
Q psy9740 22 RIKFLVLDEADRLLSGIF---DEQMRTIFGAVPKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f---~~~i~~Il~~l~~~~Q~il~SATl~~~v~ 68 (189)
.-..++|||+|.|+..|. ..+...+++..-.+-.+.+..||-+.+.+
T Consensus 266 ~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 266 GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYR 315 (852)
T ss_pred CCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHH
Confidence 346899999999985332 12344555443344556666677666553
No 439
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.89 E-value=54 Score=26.53 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=39.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||--.=||......+..++..+.+. -+++++..-+..+.+++..
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~vsH~~~~~~~~~d~ 216 (252)
T PRK14255 164 AVKPDVILLDEPTSALDPISSTQIENMLLELRDQ-YTIILVTHSMHQASRISDK 216 (252)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhC-CEEEEEECCHHHHHHhCCE
Confidence 4677899999999999999888998888777554 3566655555555555543
No 440
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=27.25 E-value=56 Score=26.27 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=35.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQ 69 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~ 69 (189)
+.+.+++++||--.=||......+..++..+.+...+++++.--...+..
T Consensus 161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~ 210 (248)
T PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDY 210 (248)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 46789999999999999999999998888775433455554433333333
No 441
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.20 E-value=72 Score=25.98 Aligned_cols=52 Identities=12% Similarity=0.206 Sum_probs=37.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+.+++||--.-||......+..++..+.+.. +++++..-...+.+++.
T Consensus 171 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-tiiivtH~~~~~~~~~d 222 (259)
T PRK14274 171 ATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKY-TIVIVTHNMQQAARVSD 222 (259)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCC-EEEEEEcCHHHHHHhCC
Confidence 46778999999999999988888888888776544 44444443344444443
No 442
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.12 E-value=63 Score=29.24 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=23.3
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEE-eec
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLF-SAT 62 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~-SAT 62 (189)
+..++|+||+|.+=+....+-|..=... .+++|++.. ||.
T Consensus 123 ~~~~~i~DE~h~~~~~~~~~~l~~g~~~-r~~pl~~~ISTag 163 (477)
T PF03354_consen 123 NPSLAIFDELHAHKDDELYDALESGMGA-RPNPLIIIISTAG 163 (477)
T ss_pred CCceEEEeCCCCCCCHHHHHHHHhhhcc-CCCceEEEEeCCC
Confidence 4689999999998654333333333333 246666554 443
No 443
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=27.09 E-value=1.2e+02 Score=29.31 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=26.0
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHH
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l 70 (189)
+-..++|||+|.|-.. .++ .++..+ .+.++++.+||-+.....+
T Consensus 109 ~~~IL~IDEIh~Ln~~-qQd---aLL~~l-E~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 109 KRTILFIDEVHRFNKA-QQD---ALLPWV-ENGTITLIGATTENPYFEV 152 (725)
T ss_pred CceEEEEeChhhCCHH-HHH---HHHHHh-cCceEEEEEecCCChHhhh
Confidence 4458999999997432 222 233333 3467788888865444333
No 444
>PF05717 TnpB_IS66: IS66 Orf2 like protein; InterPro: IPR008878 Thess proteins are found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.02 E-value=1.7e+02 Score=20.94 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=26.1
Q ss_pred eeEEEecC---cchHHHHHHHHHHHHhcCC-CCeEEEEecCCC
Q psy9740 151 QYYVLCPY---DVKDGYLVETVRLYREKSP-RGAIVIFTDTCR 189 (189)
Q Consensus 151 q~~~~~~~---~~K~~~L~~lL~~~~~~~~-~~~~iIF~ns~~ 189 (189)
+.|++++. ....+.|..+++......| .+.+-||||.++
T Consensus 3 ri~l~~~~vDmRkg~dgL~~lV~~~~~~dp~~g~~fvF~nr~r 45 (107)
T PF05717_consen 3 RIYLACGPVDMRKGIDGLAALVREELGLDPFSGDLFVFCNRRR 45 (107)
T ss_pred EEEEEeCCcccccChhHHHHHHHHhhcCCCCcceEEEEEeccC
Confidence 45666654 3467778888887654433 467889999764
No 445
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=26.96 E-value=50 Score=27.45 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=39.2
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
.+.+++++||--.=||......+..++..+.+. ..+++++..-+..+.+++..
T Consensus 171 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~ 224 (272)
T PRK13547 171 QPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADR 224 (272)
T ss_pred CCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence 367999999999999999999999888877543 34566665555555555543
No 446
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.96 E-value=65 Score=26.25 Aligned_cols=52 Identities=13% Similarity=0.234 Sum_probs=37.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.=||......+..++..+.+. -+++++..-...+.+++.
T Consensus 170 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~tiiivsH~~~~~~~~~d 221 (258)
T PRK14268 170 AVKPKIILFDEPTSALDPISTARIEDLIMNLKKD-YTIVIVTHNMQQAARISD 221 (258)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhC-CEEEEEECCHHHHHHhCC
Confidence 3567999999999999999999999888877544 355555554445555443
No 447
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=26.88 E-value=1.3e+02 Score=21.70 Aligned_cols=41 Identities=10% Similarity=-0.126 Sum_probs=15.8
Q ss_pred hhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 147 EELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 147 ~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
-+|...++.+....-...-++.+...... ..+|+++||.|-
T Consensus 56 ~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~Pvl~hC~sG 96 (110)
T PF04273_consen 56 LGLQYVHIPVDGGAITEEDVEAFADALES-LPKPVLAHCRSG 96 (110)
T ss_dssp CT-EEEE----TTT--HHHHHHHHHHHHT-TTTSEEEE-SCS
T ss_pred cCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCCCEEEECCCC
Confidence 34555555555433222222222222222 247999999873
No 448
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=26.76 E-value=1.4e+02 Score=25.82 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=18.6
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhC
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAV 50 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l 50 (189)
.+.-+.+|||+||.|=. +.-..+++.+
T Consensus 106 ~g~~kV~iI~~ae~m~~----~AaNaLLKtL 132 (334)
T PRK07993 106 LGGAKVVWLPDAALLTD----AAANALLKTL 132 (334)
T ss_pred cCCceEEEEcchHhhCH----HHHHHHHHHh
Confidence 46778999999999943 3344444444
No 449
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=26.72 E-value=1.3e+02 Score=25.30 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=27.7
Q ss_pred eeEEeccchhhhcc----ccHHH-HHHHHhhCCC-CCcEEEEeecCCchHHHH
Q psy9740 24 KFLVLDEADRLLSG----IFDEQ-MRTIFGAVPK-QKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 24 ~~lVlDEaD~ll~~----~f~~~-i~~Il~~l~~-~~Q~il~SATl~~~v~~l 70 (189)
..|+|||+|.|... ++... ...++..+.. ..-+++..||.+.....+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~ 175 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSF 175 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHH
Confidence 58999999988522 24343 3455555542 234556667776655443
No 450
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.71 E-value=60 Score=26.65 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=40.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+-+++++||--.=||......+..++..+.+. -+++++..-...+.+++..
T Consensus 180 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~tiii~tH~~~~~~~~~d~ 232 (268)
T PRK14248 180 AMKPAVLLLDEPASALDPISNAKIEELITELKEE-YSIIIVTHNMQQALRVSDR 232 (268)
T ss_pred hCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC-CEEEEEEeCHHHHHHhCCE
Confidence 4677999999999999999999999888877554 3566666555556665543
No 451
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=26.55 E-value=90 Score=29.55 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=25.2
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
..-+.+|+||||.|-. +-.+.+...++.-|... ++++.+|-+..+
T Consensus 118 ~~~KVIIIDEad~Lt~-~A~NaLLKtLEEPp~~t-vfIL~Tt~~~KL 162 (605)
T PRK05896 118 FKYKVYIIDEAHMLST-SAWNALLKTLEEPPKHV-VFIFATTEFQKI 162 (605)
T ss_pred CCcEEEEEechHhCCH-HHHHHHHHHHHhCCCcE-EEEEECCChHhh
Confidence 4457899999998743 33344444454444443 344444555444
No 452
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=26.49 E-value=61 Score=25.47 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=36.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~ 68 (189)
+.+.+++++||-..=+|......+..++..+.+...+++++.--...+.
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 191 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLP 191 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhc
Confidence 4567999999999999999888988888776444456666555444444
No 453
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=26.38 E-value=86 Score=21.87 Aligned_cols=42 Identities=10% Similarity=0.095 Sum_probs=26.4
Q ss_pred hhhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy9740 146 VEELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDT 187 (189)
Q Consensus 146 ~~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns 187 (189)
.+.+++..+.+...++...+...|+....-.+.+.+-+|+|+
T Consensus 12 aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~ 53 (87)
T PF04110_consen 12 APILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINN 53 (87)
T ss_dssp ----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEE
T ss_pred CccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcC
Confidence 366788888999999999999999976643446788888875
No 454
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=26.27 E-value=76 Score=28.66 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=21.5
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEE
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLL 58 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il 58 (189)
+.-+.+|+||||.|-.. -.+.+.+.++.-|....+++
T Consensus 120 ~~~kvvIIdead~lt~~-~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKE-AFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred CCCEEEEEecHHhhCHH-HHHHHHHHhhcCCCCceEEE
Confidence 55689999999998533 23334444444334443343
No 455
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=26.24 E-value=88 Score=24.65 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=31.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHH--HHhhCCCCCcEEEEeec
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRT--IFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~--Il~~l~~~~Q~il~SAT 62 (189)
+.+-+++++||...-||....+.+.+ ++..+.+...+++++.-
T Consensus 156 ~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH 200 (218)
T cd03290 156 YQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTH 200 (218)
T ss_pred hhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeC
Confidence 46679999999999999987777776 77766543345555443
No 456
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.09 E-value=56 Score=25.84 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=38.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.=||......+..++..+.++ ..+++++..-...+.+++.
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d 200 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCD 200 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 4677899999999999999899988888776543 3456665544445555554
No 457
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.06 E-value=53 Score=26.52 Aligned_cols=54 Identities=15% Similarity=0.235 Sum_probs=38.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+-+.+++||.-.=||......+..++..+.+. -.+++++..-...+.+++..
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~ 201 (241)
T PRK14250 147 ANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDY 201 (241)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCE
Confidence 4677999999999999998888888888776542 33555555444555555543
No 458
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.01 E-value=1.1e+02 Score=28.66 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=23.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecC
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl 63 (189)
+..-+.+||||+|.|-... .+.+.+.++.-+.. -++++.++-
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~-tv~Il~t~~ 159 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPH-AIFILATTE 159 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCC-eEEEEEeCC
Confidence 4567899999999885422 23333333433333 344444443
No 459
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.01 E-value=66 Score=26.03 Aligned_cols=54 Identities=9% Similarity=0.134 Sum_probs=40.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+++++||--.=||......+..++..+.+. -++++++.-...+.+++...
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~tilivsh~~~~~~~~~d~i 216 (251)
T PRK14249 163 AIEPEVILMDEPCSALDPVSTMRIEELMQELKQN-YTIAIVTHNMQQAARASDWT 216 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhhCCEE
Confidence 4667999999999999999888888888877433 46666666555666655443
No 460
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=25.88 E-value=30 Score=33.04 Aligned_cols=14 Identities=36% Similarity=0.394 Sum_probs=12.1
Q ss_pred eeeEEeccchhhhc
Q psy9740 23 IKFLVLDEADRLLS 36 (189)
Q Consensus 23 l~~lVlDEaD~ll~ 36 (189)
-.++|+||||.|-+
T Consensus 247 ~~~lViDEAH~L~d 260 (697)
T PRK11747 247 NLLYVLDEGHHLPD 260 (697)
T ss_pred CCEEEEECccchHH
Confidence 56799999999975
No 461
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=25.87 E-value=74 Score=25.46 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=30.6
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCC---CcEEEEee
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ---KQTLLFSA 61 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~---~Q~il~SA 61 (189)
.+.+++++||...-++......+..++..+.+. .++++.|-
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith 190 (213)
T cd03277 147 TRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITP 190 (213)
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEch
Confidence 566899999999999998888888887666433 34555543
No 462
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=25.83 E-value=73 Score=29.64 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=25.6
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~ 68 (189)
...-+.+||||+|.|-.. -.+.+.+.++.-|... ++++.+|-+..+.
T Consensus 117 ~~~~kViIIDE~~~Lt~~-a~naLLKtLEepp~~~-ifIlatt~~~ki~ 163 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTG-AFNALLKTLEEPPAHV-IFILATTEPHKIP 163 (559)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHhcCCCCCe-EEEEEeCChhhCc
Confidence 345679999999988543 2333333444433333 3344455555443
No 463
>PRK10865 protein disaggregation chaperone; Provisional
Probab=25.73 E-value=81 Score=31.01 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=28.2
Q ss_pred eeEEeccchhhhccc---cHHHHHHHHhhCCCCCcEEEEeecCCchHH
Q psy9740 24 KFLVLDEADRLLSGI---FDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 24 ~~lVlDEaD~ll~~~---f~~~i~~Il~~l~~~~Q~il~SATl~~~v~ 68 (189)
..|++||+|.|...| -..+...+++..-.+-.+.+..||-+.+.+
T Consensus 273 ~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 273 VILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320 (857)
T ss_pred eEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHH
Confidence 488999999998543 123345555443345566666777766653
No 464
>PRK08181 transposase; Validated
Probab=25.66 E-value=80 Score=26.50 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=29.5
Q ss_pred cCceeeEEeccchhhhccc-cHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 20 LNRIKFLVLDEADRLLSGI-FDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~-f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
+.++..|||||.+.+-... ....+-.|+.....+..+++.|-.-+.+.
T Consensus 165 l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w 213 (269)
T PRK08181 165 LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEW 213 (269)
T ss_pred HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 5678899999998764332 33456666665444455666555444443
No 465
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=25.63 E-value=1.4e+02 Score=28.58 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=37.7
Q ss_pred ceeeEEeccchhhhc-cccHHHHHHHHhhCCCCCcEEEEeecCCc-hHH--HHHHhhccccceeeee
Q psy9740 22 RIKFLVLDEADRLLS-GIFDEQMRTIFGAVPKQKQTLLFSATMTD-TLE--QVKSITKKQVGTLLFS 84 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~-~~f~~~i~~Il~~l~~~~Q~il~SATl~~-~v~--~l~~~~l~~p~~~~~~ 84 (189)
.-.++|+|||+.+++ ..+.+.+..+++...+. -..++-||... ++. +.++..+.+-.+.++.
T Consensus 629 ~~~~i~iDEa~~ll~~~~~~~~i~~~~r~~RK~-~~~~~~~TQ~~~d~~~~~~~~~il~n~~~ki~l 694 (785)
T TIGR00929 629 RPFLIIIDEAWQYLGNPVFAAKIRDWLKTLRKA-NGIVVLATQSINDALGSRIADSILEQCATKIFL 694 (785)
T ss_pred CCeEEEEechhhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHhcCchHHHHHHhCCEEEEc
Confidence 446889999999996 45777888888877543 34455567533 232 2344444554433333
No 466
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=25.59 E-value=57 Score=26.70 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=38.1
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCC-CCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVP-KQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.-||......+..++..+. +.-.+++++..-+..+.+++.
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d 197 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMAT 197 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 46778999999999999999999999888763 223455555544455555553
No 467
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=25.19 E-value=64 Score=26.64 Aligned_cols=53 Identities=9% Similarity=0.169 Sum_probs=39.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||--.-||......+..++..+.+. -+++++..-...+.+++..
T Consensus 183 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~i~~~~d~ 235 (271)
T PRK14238 183 AIEPDVILMDEPTSALDPISTLKVEELVQELKKD-YSIIIVTHNMQQAARISDK 235 (271)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcC-CEEEEEEcCHHHHHHhCCE
Confidence 4677999999999999999889998888887654 4566655545555655543
No 468
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=25.16 E-value=49 Score=28.55 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=39.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||.-.-||......+..++..+.+. ..+++++..-...+.+++.
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d 209 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICD 209 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 4678999999999999999999999988877543 3456665554455555554
No 469
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=25.14 E-value=73 Score=26.18 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=36.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+-+.+++||--.=||......+..++..+.+.. +++++..-+..+.+++.
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-tiii~tH~~~~~~~~~d 230 (267)
T PRK14237 179 AVKPDILLMDEPASALDPISTMQLEETMFELKKNY-TIIIVTHNMQQAARASD 230 (267)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCC-EEEEEecCHHHHHHhcC
Confidence 45678999999999999988888888887775444 44444444445555544
No 470
>PRK02224 chromosome segregation protein; Provisional
Probab=24.95 E-value=58 Score=31.66 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=32.0
Q ss_pred eeeEEeccchhhhccccHHHHHHHHhhCCC--CCcEEEEeec
Q psy9740 23 IKFLVLDEADRLLSGIFDEQMRTIFGAVPK--QKQTLLFSAT 62 (189)
Q Consensus 23 l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~--~~Q~il~SAT 62 (189)
...+|+||.+.-+|......+..++..++. ..|++++|--
T Consensus 812 ~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~ 853 (880)
T PRK02224 812 LPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHD 853 (880)
T ss_pred CCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 356999999999999988888888888764 3588887654
No 471
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=24.79 E-value=83 Score=26.55 Aligned_cols=46 Identities=9% Similarity=0.155 Sum_probs=25.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
.+.-+.+|+||||.|=.. -.+.+-..++.-|.+.-+++ .++-+..+
T Consensus 91 ~~~~kv~iI~~ad~m~~~-a~naLLK~LEepp~~t~~il-~~~~~~~l 136 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQ-AQNAFLKTIEEPPKGVFIIL-LCENLEQI 136 (313)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHhcCCCCCeEEEE-EeCChHhC
Confidence 467789999999999433 23344444444343444444 44544433
No 472
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=24.73 E-value=1.1e+02 Score=26.24 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=23.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
.+.-+.+|+|+||.|-.. -.+.+-++++--| +.-++|.+
T Consensus 122 ~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~ 160 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIA 160 (314)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEE
Confidence 367789999999999432 3444444555444 55444443
No 473
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=24.71 E-value=60 Score=26.63 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=38.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+-+++++||.-.=||......+..++..+.+. .-+++++..-...+.+++..
T Consensus 166 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 166 AVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcE
Confidence 4677999999999999998888888888776542 34666666555556555543
No 474
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.68 E-value=51 Score=26.53 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=37.7
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+.+++||--.=||......+..++..+.+. ..+++++..-+..+.+++.
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d 204 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLAD 204 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCC
Confidence 4667899999999999998888888888776532 3455555544445555554
No 475
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=24.60 E-value=59 Score=26.35 Aligned_cols=54 Identities=13% Similarity=0.160 Sum_probs=37.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+++++||.-.=||......+..++..+.+. ..+++++..-...+..++..
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 216 (252)
T TIGR03005 162 AMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADR 216 (252)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 4567899999999999998888888888776542 34555555444555555543
No 476
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=24.60 E-value=97 Score=25.24 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=32.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
+.+.+++++||.-.=||......+..++..+.... +++++..-+..+
T Consensus 172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~-tiii~sh~~~~~ 218 (257)
T cd03288 172 VRKSSILIMDEATASIDMATENILQKVVMTAFADR-TVVTIAHRVSTI 218 (257)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCC-EEEEEecChHHH
Confidence 35678999999999999888888888877765443 455444333333
No 477
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=24.51 E-value=54 Score=26.79 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=39.2
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
..+.+.+++||-..=||......+..++..+.+. -.+++++..-+..+.+++..
T Consensus 168 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~ 222 (262)
T PRK09984 168 MQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCER 222 (262)
T ss_pred hcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 3567899999999999999999999998887642 34555555544555555543
No 478
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=24.40 E-value=60 Score=26.25 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=39.7
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||--.=||......+..++..+.+. --+++++.--...+.+++..
T Consensus 169 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~ 223 (255)
T PRK11300 169 VTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDR 223 (255)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCE
Confidence 3667999999999999999999998888877543 33566666555556665543
No 479
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=24.40 E-value=61 Score=26.60 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=39.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+.+++||-..=||......+..++..+.+. .-+++++.--...+.+++...
T Consensus 159 ~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i 214 (265)
T PRK10253 159 AQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHL 214 (265)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4677999999999999999899998888877542 235555554445566665543
No 480
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=24.29 E-value=95 Score=24.56 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEecC
Q psy9740 163 GYLVETVRLYREKSPRGAIVIFTDT 187 (189)
Q Consensus 163 ~~L~~lL~~~~~~~~~~~~iIF~ns 187 (189)
++|+++|..........++||+||.
T Consensus 97 e~Ly~iL~~~~~~~~~~piLIacNK 121 (181)
T PF09439_consen 97 EYLYDILSDTEVQKNKPPILIACNK 121 (181)
T ss_dssp HHHHHHHHHHHCCTT--EEEEEEE-
T ss_pred HHHHHHHHhhhhccCCCCEEEEEeC
Confidence 3477777665544567899999995
No 481
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.28 E-value=83 Score=29.77 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=12.4
Q ss_pred CceeeEEeccchhhh
Q psy9740 21 NRIKFLVLDEADRLL 35 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll 35 (189)
+.-+.+||||||.|=
T Consensus 120 ~~~KViIIDEad~Lt 134 (620)
T PRK14948 120 ARWKVYVIDECHMLS 134 (620)
T ss_pred CCceEEEEECccccC
Confidence 456899999999884
No 482
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=24.08 E-value=85 Score=23.85 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=32.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEee
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSA 61 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SA 61 (189)
+.+.+++++||--.-||......+..++..+.+...+++++.
T Consensus 112 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s 153 (173)
T cd03246 112 YGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIA 153 (173)
T ss_pred hcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 467789999999999999989999888877754333455444
No 483
>PRK13695 putative NTPase; Provisional
Probab=24.00 E-value=77 Score=24.07 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=27.4
Q ss_pred cCceeeEEeccchh--hhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 20 LNRIKFLVLDEADR--LLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 20 l~~l~~lVlDEaD~--ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
+.+.+.+++||+.. -++..+.+.+..+++ ... .+++... ...+..++......
T Consensus 94 l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~-~~i~v~h-~~~~~~~~~~i~~~ 148 (174)
T PRK13695 94 LEEADVIIIDEIGKMELKSPKFVKAVEEVLD---SEK-PVIATLH-RRSVHPFVQEIKSR 148 (174)
T ss_pred cCCCCEEEEECCCcchhhhHHHHHHHHHHHh---CCC-eEEEEEC-chhhHHHHHHHhcc
Confidence 45677899999543 344445555555542 222 3333332 23444555555544
No 484
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=23.96 E-value=1e+02 Score=29.55 Aligned_cols=44 Identities=9% Similarity=0.120 Sum_probs=27.1
Q ss_pred eeEEeccchhhhcccc----HHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 24 KFLVLDEADRLLSGIF----DEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 24 ~~lVlDEaD~ll~~~f----~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
..+++||+|.+...|. ..+...++...-.+-.+.+..||=+.+.
T Consensus 276 ~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 276 AILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEY 323 (731)
T ss_pred eEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHH
Confidence 4789999999986432 1234455543323455667777766543
No 485
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=23.88 E-value=68 Score=24.67 Aligned_cols=42 Identities=29% Similarity=0.261 Sum_probs=31.6
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEee
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSA 61 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SA 61 (189)
+.+-+++++||--.=||......+..++..+.+...+++++.
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~s 184 (190)
T TIGR01166 143 AMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVIST 184 (190)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 466789999999999999888888888877654333444443
No 486
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=23.69 E-value=1.6e+02 Score=25.34 Aligned_cols=16 Identities=31% Similarity=0.573 Sum_probs=13.7
Q ss_pred cCceeeEEeccchhhh
Q psy9740 20 LNRIKFLVLDEADRLL 35 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll 35 (189)
.+.-+.+|||+||.|-
T Consensus 106 ~~~~kV~iI~~ae~m~ 121 (319)
T PRK06090 106 LNGYRLFVIEPADAMN 121 (319)
T ss_pred cCCceEEEecchhhhC
Confidence 4667999999999994
No 487
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=23.48 E-value=63 Score=28.11 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=21.6
Q ss_pred ccCceeeEEeccchhhhccccHHHHHHHHhhC
Q psy9740 19 SLNRIKFLVLDEADRLLSGIFDEQMRTIFGAV 50 (189)
Q Consensus 19 ~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l 50 (189)
.++.++++|+||+-.+- ......|...++.+
T Consensus 99 ~l~~~~~lIiDEism~~-~~~l~~i~~~lr~i 129 (364)
T PF05970_consen 99 RLRKADVLIIDEISMVS-ADMLDAIDRRLRDI 129 (364)
T ss_pred hhhhheeeecccccchh-HHHHHHHHHhhhhh
Confidence 47889999999998654 33555666555544
No 488
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=23.29 E-value=82 Score=24.91 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=32.9
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHH
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l 70 (189)
+.+++++||...=+|......+..++..+.+..-++++..--+..+..+
T Consensus 151 ~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~ 199 (213)
T cd03279 151 RLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERI 199 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhh
Confidence 4579999999999998888888888877754333444433333333333
No 489
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=23.10 E-value=84 Score=28.23 Aligned_cols=49 Identities=22% Similarity=0.292 Sum_probs=39.3
Q ss_pred ceeeEEeccchhhhcc-ccHHHHHHHHhhCC-CCCcEEEEeecCCchHHHH
Q psy9740 22 RIKFLVLDEADRLLSG-IFDEQMRTIFGAVP-KQKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~-~f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~~l 70 (189)
++..|++|.++.+-.. +.++.+-.++..+. .+.|+++.|...|.++..+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc
Confidence 7899999999998755 46777888888776 4669999998888887644
No 490
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=23.00 E-value=65 Score=26.44 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=39.1
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||-..=||......+..++..+.+. .-+++++..-...+.+++..
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~ 217 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDY 217 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4677999999999999999888888888776532 34566655555556665543
No 491
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=22.87 E-value=1.7e+02 Score=27.27 Aligned_cols=44 Identities=16% Similarity=0.340 Sum_probs=24.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCC--CCCcEEEEeecCCchH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVP--KQKQTLLFSATMTDTL 67 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~--~~~Q~il~SATl~~~v 67 (189)
.+.-+.+|+||+|.|-.. ....+++.+. +..-+++|.+|-+..+
T Consensus 117 ~~~~KVvIIDEa~~Ls~~----a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNS----AFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred cCCCEEEEEEChhhcCHH----HHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 356789999999988432 3334444443 3444444544544433
No 492
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=22.80 E-value=2e+02 Score=25.85 Aligned_cols=69 Identities=20% Similarity=0.266 Sum_probs=41.6
Q ss_pred ehHhhHHHHhcCCCcccCceeeEEeccchhhh-ccccHHHHHHHHhhC-CCCCcEEEEeecCCc-hHHHHHHhhccc
Q psy9740 4 TPGRLADHLDTCNTFSLNRIKFLVLDEADRLL-SGIFDEQMRTIFGAV-PKQKQTLLFSATMTD-TLEQVKSITKKQ 77 (189)
Q Consensus 4 TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll-~~~f~~~i~~Il~~l-~~~~Q~il~SATl~~-~v~~l~~~~l~~ 77 (189)
+|..+...+.. +.+.+++++|.+=..- +....+.+..++... ....-.+++|||... .+.+..+.|-.-
T Consensus 286 ~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~ 357 (424)
T PRK05703 286 DPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRL 357 (424)
T ss_pred CHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCC
Confidence 34444444443 4567899999986543 233556677777632 223446778998764 566776666544
No 493
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=22.77 E-value=70 Score=31.30 Aligned_cols=17 Identities=47% Similarity=0.692 Sum_probs=14.5
Q ss_pred cCceeeEEeccchhhhc
Q psy9740 20 LNRIKFLVLDEADRLLS 36 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~ 36 (189)
+..-.++|+||||+|-+
T Consensus 434 ~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 434 FARNKVLVFDEAQKLML 450 (820)
T ss_pred CCCCCEEEEECcchhHH
Confidence 56678999999999974
No 494
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=22.75 E-value=66 Score=26.18 Aligned_cols=54 Identities=6% Similarity=0.111 Sum_probs=39.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||-..=||......+..++..+.+. ..+++++..-...+.+++..
T Consensus 167 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~ 221 (258)
T PRK11701 167 VTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHR 221 (258)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 4677999999999999998888888888776442 34666666555555555543
No 495
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=22.70 E-value=80 Score=26.03 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=39.1
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||--.=||......+..++..+.+.. +++++..-+..+.+++..
T Consensus 184 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~-tiiivtH~~~~~~~~~d~ 236 (272)
T PRK14236 184 AIEPEVLLLDEPTSALDPISTLKIEELITELKSKY-TIVIVTHNMQQAARVSDY 236 (272)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC-eEEEEeCCHHHHHhhCCE
Confidence 46789999999999999998888888888775543 555555545555655544
No 496
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.50 E-value=55 Score=27.25 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=38.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+.+++||.-.=||......+..++..+.+. -.+++++.--...+..++.
T Consensus 157 ~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~d 210 (283)
T PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCD 210 (283)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC
Confidence 4667999999999999998888888888777542 3466666544444555443
No 497
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=22.42 E-value=56 Score=27.94 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=39.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~ 72 (189)
..+.+++++||.-.=||......+..++..+.+. ..+++++..-..++..++.
T Consensus 116 ~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d 169 (325)
T TIGR01187 116 VFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSD 169 (325)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 3667999999999999999888888888776543 3466666555555555554
No 498
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=22.35 E-value=1.2e+02 Score=22.99 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=27.0
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhC
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAV 50 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l 50 (189)
+.+.+++++||--.-||......+..++..+
T Consensus 107 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~ 137 (166)
T cd03223 107 LHKPKFVFLDEATSALDEESEDRLYQLLKEL 137 (166)
T ss_pred HcCCCEEEEECCccccCHHHHHHHHHHHHHh
Confidence 4677899999999999998888888888776
No 499
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=22.35 E-value=1.3e+02 Score=27.70 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=23.7
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
++-+.+|+||+|.|-. +-.+.+.+.++.- +..-++++.+|-+..+
T Consensus 127 ~~~KVvIIDEa~~Ls~-~a~naLLk~LEep-p~~~vfI~aTte~~kI 171 (507)
T PRK06645 127 GKHKIFIIDEVHMLSK-GAFNALLKTLEEP-PPHIIFIFATTEVQKI 171 (507)
T ss_pred CCcEEEEEEChhhcCH-HHHHHHHHHHhhc-CCCEEEEEEeCChHHh
Confidence 4567899999997743 2233333333332 2333444555544443
No 500
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.25 E-value=93 Score=26.23 Aligned_cols=53 Identities=9% Similarity=0.194 Sum_probs=39.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+.+.+.+++||.-.=||......+..++..+.+. -+++++..-...+.+++..
T Consensus 216 ~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~~~i~~~~d~ 268 (305)
T PRK14264 216 AVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNMQQAARISDQ 268 (305)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCHHHHHHhcCE
Confidence 4678999999999999998888998888877655 3555555555555666554
Done!