Query psy9740
Match_columns 189
No_of_seqs 117 out of 1329
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 18:20:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 99.8 5.4E-21 1.8E-25 167.5 11.9 126 1-188 183-310 (434)
2 2j0s_A ATP-dependent RNA helic 99.8 7.1E-19 2.4E-23 151.1 11.7 127 1-188 159-286 (410)
3 2i4i_A ATP-dependent RNA helic 99.8 2.2E-18 7.6E-23 148.0 11.3 128 1-188 155-286 (417)
4 3fmp_B ATP-dependent RNA helic 99.8 1.4E-18 4.8E-23 153.1 8.8 129 1-189 214-344 (479)
5 3eiq_A Eukaryotic initiation f 99.7 3.6E-18 1.2E-22 146.3 10.5 127 1-188 163-290 (414)
6 3fht_A ATP-dependent RNA helic 99.7 1.6E-17 5.5E-22 142.0 12.3 128 1-188 147-276 (412)
7 1xti_A Probable ATP-dependent 99.7 4.1E-17 1.4E-21 138.7 12.0 127 1-188 132-260 (391)
8 3fmo_B ATP-dependent RNA helic 99.7 1.3E-17 4.4E-22 140.0 8.5 84 1-84 214-298 (300)
9 3fe2_A Probable ATP-dependent 99.7 3E-17 1E-21 132.8 8.4 84 1-85 156-239 (242)
10 1fuu_A Yeast initiation factor 99.7 3E-17 1E-21 139.5 8.6 128 1-189 142-270 (394)
11 1s2m_A Putative ATP-dependent 99.7 1.4E-16 4.9E-21 136.1 12.0 126 1-188 143-268 (400)
12 3pey_A ATP-dependent RNA helic 99.7 1.7E-16 5.7E-21 134.6 11.1 127 1-188 125-253 (395)
13 3sqw_A ATP-dependent RNA helic 99.7 7.1E-17 2.4E-21 145.9 8.8 136 1-188 154-298 (579)
14 3i5x_A ATP-dependent RNA helic 99.7 7.6E-17 2.6E-21 144.5 8.7 136 1-188 205-349 (563)
15 3iuy_A Probable ATP-dependent 99.7 1E-16 3.5E-21 128.1 8.4 81 1-82 147-227 (228)
16 1wrb_A DJVLGB; RNA helicase, D 99.7 9.6E-17 3.3E-21 130.3 8.2 77 1-78 154-234 (253)
17 1hv8_A Putative ATP-dependent 99.6 8.4E-16 2.9E-20 129.0 11.9 122 1-188 127-248 (367)
18 3bor_A Human initiation factor 99.6 3.6E-16 1.2E-20 126.2 8.0 82 1-83 153-234 (237)
19 1q0u_A Bstdead; DEAD protein, 99.6 5.8E-16 2E-20 123.1 8.5 81 1-82 130-210 (219)
20 3ly5_A ATP-dependent RNA helic 99.6 4.5E-16 1.5E-20 127.8 8.1 79 1-79 180-258 (262)
21 2pl3_A Probable ATP-dependent 99.6 6E-16 2E-20 124.2 8.4 84 1-84 150-233 (236)
22 3fho_A ATP-dependent RNA helic 99.6 1.8E-15 6E-20 135.1 11.9 128 1-189 239-368 (508)
23 2oxc_A Probable ATP-dependent 99.6 6.6E-16 2.3E-20 123.9 8.1 80 1-81 146-226 (230)
24 3ber_A Probable ATP-dependent 99.6 8.7E-16 3E-20 125.2 8.4 82 1-82 165-246 (249)
25 2gxq_A Heat resistant RNA depe 99.6 1.4E-15 4.9E-20 119.1 8.0 80 1-81 124-203 (207)
26 1vec_A ATP-dependent RNA helic 99.6 1.7E-15 5.8E-20 118.7 8.4 78 1-79 126-203 (206)
27 2z0m_A 337AA long hypothetical 99.6 5.2E-15 1.8E-19 123.0 11.5 76 1-77 109-184 (337)
28 1qde_A EIF4A, translation init 99.6 2.8E-15 9.7E-20 119.1 8.2 83 1-84 135-217 (224)
29 1t6n_A Probable ATP-dependent 99.6 4.3E-15 1.5E-19 117.9 7.7 79 1-80 138-217 (220)
30 3dkp_A Probable ATP-dependent 99.6 8.6E-15 3E-19 118.0 8.6 85 1-85 153-242 (245)
31 3oiy_A Reverse gyrase helicase 99.5 4.9E-15 1.7E-19 127.9 5.3 117 1-188 121-262 (414)
32 4ddu_A Reverse gyrase; topoiso 99.5 8.4E-15 2.9E-19 141.7 5.1 118 1-189 178-320 (1104)
33 1tf5_A Preprotein translocase 99.5 4.4E-14 1.5E-18 132.3 8.6 76 1-76 176-304 (844)
34 3l9o_A ATP-dependent RNA helic 99.5 1.3E-13 4.6E-18 133.3 10.8 77 1-78 270-348 (1108)
35 2fsf_A Preprotein translocase 99.4 2.4E-13 8.3E-18 127.3 10.3 52 1-52 167-240 (853)
36 1gku_B Reverse gyrase, TOP-RG; 99.4 3.1E-14 1E-18 137.2 1.4 116 1-188 159-285 (1054)
37 1nkt_A Preprotein translocase 99.4 1.1E-12 3.7E-17 123.4 11.4 66 1-66 204-317 (922)
38 2xgj_A ATP-dependent RNA helic 99.3 9.6E-12 3.3E-16 119.5 13.2 71 1-73 172-242 (1010)
39 4a4z_A Antiviral helicase SKI2 99.3 3.9E-12 1.4E-16 122.0 9.7 73 1-75 127-199 (997)
40 2zj8_A DNA helicase, putative 99.3 6.4E-12 2.2E-16 116.2 10.1 73 1-75 118-190 (720)
41 3llm_A ATP-dependent RNA helic 99.3 2.6E-12 8.8E-17 103.5 6.4 71 1-78 159-231 (235)
42 2v1x_A ATP-dependent DNA helic 99.3 5.7E-12 1.9E-16 114.8 9.0 75 1-77 140-224 (591)
43 2p6r_A Afuhel308 helicase; pro 99.3 1.2E-11 4.2E-16 114.0 10.8 73 1-75 118-193 (702)
44 2va8_A SSO2462, SKI2-type heli 99.2 2.4E-11 8.2E-16 112.1 10.6 72 1-75 125-196 (715)
45 1oyw_A RECQ helicase, ATP-depe 99.2 1.8E-11 6.3E-16 109.7 7.3 69 1-71 119-192 (523)
46 4a2p_A RIG-I, retinoic acid in 99.2 1.6E-10 5.3E-15 102.3 11.0 64 1-65 109-178 (556)
47 2ykg_A Probable ATP-dependent 99.2 6.6E-11 2.3E-15 108.3 8.5 63 1-64 115-184 (696)
48 1wp9_A ATP-dependent RNA helic 99.1 4.7E-10 1.6E-14 96.2 12.8 68 1-69 105-172 (494)
49 3tbk_A RIG-I helicase domain; 99.1 2.8E-10 9.6E-15 100.3 10.5 64 1-65 106-176 (555)
50 2xau_A PRE-mRNA-splicing facto 99.1 1.8E-10 6.2E-15 107.9 9.7 69 1-74 189-259 (773)
51 4f92_B U5 small nuclear ribonu 99.1 3.5E-10 1.2E-14 113.5 9.8 75 1-77 1024-1106(1724)
52 2whx_A Serine protease/ntpase/ 99.1 2.7E-12 9.2E-17 117.6 -5.2 67 2-70 250-325 (618)
53 3o8b_A HCV NS3 protease/helica 99.0 1.9E-10 6.4E-15 106.1 5.6 61 1-66 301-363 (666)
54 4a2q_A RIG-I, retinoic acid in 99.0 1.2E-09 4.3E-14 102.1 11.0 63 1-64 350-418 (797)
55 1yks_A Genome polyprotein [con 99.0 5E-12 1.7E-16 111.1 -5.2 67 2-70 72-147 (440)
56 4f92_B U5 small nuclear ribonu 99.0 1.6E-09 5.6E-14 108.7 11.5 74 1-77 185-267 (1724)
57 4a2w_A RIG-I, retinoic acid in 98.9 5.8E-09 2E-13 99.4 11.3 63 1-64 350-418 (936)
58 4gl2_A Interferon-induced heli 98.8 1.4E-09 4.9E-14 99.5 4.2 65 1-65 110-193 (699)
59 2wv9_A Flavivirin protease NS2 98.8 8.4E-11 2.9E-15 108.7 -5.9 65 2-68 305-378 (673)
60 2eyq_A TRCF, transcription-rep 98.8 1.6E-08 5.4E-13 98.4 9.5 66 1-77 710-775 (1151)
61 2jlq_A Serine protease subunit 98.7 3.7E-09 1.3E-13 93.0 2.5 64 2-68 92-156 (451)
62 3h1t_A Type I site-specific re 98.7 3.4E-08 1.1E-12 89.1 7.5 65 1-67 278-345 (590)
63 3b6e_A Interferon-induced heli 98.6 2.3E-08 7.9E-13 77.8 4.8 62 1-62 136-216 (216)
64 2fwr_A DNA repair protein RAD2 98.6 1.4E-08 4.8E-13 88.8 3.3 55 1-64 175-229 (472)
65 2z83_A Helicase/nucleoside tri 98.6 1.1E-08 3.9E-13 90.1 1.2 59 3-68 95-158 (459)
66 2v6i_A RNA helicase; membrane, 98.5 3.4E-08 1.2E-12 86.3 1.6 62 4-68 77-139 (431)
67 2d7d_A Uvrabc system protein B 98.4 5.8E-07 2E-11 82.8 8.1 57 3-67 320-400 (661)
68 1rif_A DAR protein, DNA helica 98.3 2.3E-07 7.8E-12 76.1 3.8 61 1-69 208-268 (282)
69 2oca_A DAR protein, ATP-depend 98.3 3.6E-07 1.2E-11 80.6 5.3 60 1-68 208-267 (510)
70 1gm5_A RECG; helicase, replica 98.2 1.2E-06 3.9E-11 82.3 6.0 59 1-70 475-533 (780)
71 1c4o_A DNA nucleotide excision 98.2 5.8E-07 2E-11 82.8 3.0 57 3-67 314-394 (664)
72 2w00_A HSDR, R.ECOR124I; ATP-b 98.2 4.9E-06 1.7E-10 80.2 9.1 61 1-65 379-440 (1038)
73 3rc3_A ATP-dependent RNA helic 97.9 2.3E-06 7.7E-11 79.2 1.2 72 1-73 216-290 (677)
74 2fz4_A DNA repair protein RAD2 97.6 4.4E-05 1.5E-09 61.2 4.3 56 1-65 175-230 (237)
75 1z63_A Helicase of the SNF2/RA 97.6 0.0002 7E-09 62.7 8.6 57 1-64 132-188 (500)
76 2ipc_A Preprotein translocase 97.1 0.00023 7.9E-09 67.6 3.0 35 1-35 172-215 (997)
77 2p6n_A ATP-dependent RNA helic 97.0 0.00032 1.1E-08 54.4 2.9 50 134-188 15-64 (191)
78 3dmq_A RNA polymerase-associat 96.9 0.0011 3.7E-08 63.5 6.3 63 1-63 252-316 (968)
79 3mwy_W Chromo domain-containin 96.6 0.0072 2.5E-07 56.5 8.9 57 1-63 349-405 (800)
80 3crv_A XPD/RAD3 related DNA he 94.0 0.027 9.1E-07 50.3 2.8 35 1-36 152-187 (551)
81 3jux_A Protein translocase sub 93.6 0.069 2.4E-06 50.0 4.8 35 152-188 450-484 (822)
82 1w36_D RECD, exodeoxyribonucle 93.2 0.086 2.9E-06 47.8 4.8 37 22-62 262-298 (608)
83 1z3i_X Similar to RAD54-like; 91.4 0.23 8E-06 45.1 5.4 57 1-63 174-230 (644)
84 2vl7_A XPD; helicase, unknown 87.3 0.16 5.5E-06 45.2 1.0 35 1-36 148-189 (540)
85 1sxj_E Activator 1 40 kDa subu 82.3 1.2 4.2E-05 36.4 4.1 43 20-63 132-174 (354)
86 3kta_B Chromosome segregation 80.4 1.2 4E-05 33.8 3.1 40 21-60 85-124 (173)
87 2i3b_A HCR-ntpase, human cance 79.0 1.8 6.1E-05 33.0 3.8 43 20-65 103-147 (189)
88 3euj_A Chromosome partition pr 77.9 1.9 6.7E-05 38.0 4.1 37 21-60 413-449 (483)
89 2kjq_A DNAA-related protein; s 73.3 1.2 4.1E-05 32.5 1.3 47 20-67 81-129 (149)
90 1d2n_A N-ethylmaleimide-sensit 67.1 6.3 0.00021 31.0 4.4 46 21-66 123-178 (272)
91 2jgn_A DBX, DDX3, ATP-dependen 66.8 4.1 0.00014 30.5 3.1 33 140-172 11-43 (185)
92 2chg_A Replication factor C sm 65.5 13 0.00044 27.2 5.7 39 21-60 101-139 (226)
93 3h4m_A Proteasome-activating n 64.5 6.8 0.00023 30.8 4.2 40 23-62 111-163 (285)
94 3rui_B Autophagy-related prote 63.3 27 0.00091 24.7 6.7 67 120-187 18-84 (118)
95 3u61_B DNA polymerase accessor 63.1 4.7 0.00016 32.5 3.0 40 21-60 104-143 (324)
96 1njg_A DNA polymerase III subu 62.3 7.3 0.00025 28.9 3.8 38 22-60 126-163 (250)
97 1g5t_A COB(I)alamin adenosyltr 62.2 10 0.00035 29.3 4.7 54 21-74 119-174 (196)
98 1z5z_A Helicase of the SNF2/RA 60.3 5.4 0.00018 32.0 2.8 31 156-188 92-122 (271)
99 2p65_A Hypothetical protein PF 59.9 3.8 0.00013 29.4 1.7 13 23-35 116-128 (187)
100 3ec2_A DNA replication protein 59.6 3.3 0.00011 30.4 1.4 47 20-66 98-146 (180)
101 3syl_A Protein CBBX; photosynt 59.3 8.2 0.00028 30.7 3.8 12 24-35 132-143 (309)
102 3auy_A DNA double-strand break 58.0 9.6 0.00033 31.8 4.1 40 21-60 303-343 (371)
103 1iqp_A RFCS; clamp loader, ext 58.0 21 0.00071 28.2 6.0 44 21-66 109-152 (327)
104 1l8q_A Chromosomal replication 57.5 8 0.00027 31.2 3.5 42 22-64 98-141 (324)
105 4aby_A DNA repair protein RECN 57.5 6.9 0.00024 32.7 3.2 39 24-62 317-355 (415)
106 1sxj_C Activator 1 40 kDa subu 53.0 25 0.00085 28.5 5.8 43 21-65 109-151 (340)
107 4ag6_A VIRB4 ATPase, type IV s 52.6 23 0.00077 29.5 5.6 63 22-85 262-333 (392)
108 1e69_A Chromosome segregation 52.0 9.5 0.00033 31.1 3.1 42 21-62 240-281 (322)
109 1jbk_A CLPB protein; beta barr 51.8 21 0.00072 25.2 4.7 26 23-48 116-148 (195)
110 2r2a_A Uncharacterized protein 51.6 12 0.0004 28.7 3.4 39 23-62 88-132 (199)
111 2z4s_A Chromosomal replication 51.4 14 0.00046 31.7 4.1 44 22-65 194-239 (440)
112 3m95_A Autophagy related prote 51.2 50 0.0017 23.6 6.4 67 120-187 24-90 (125)
113 2qby_A CDC6 homolog 1, cell di 51.1 17 0.0006 29.2 4.6 40 23-62 129-171 (386)
114 2v1u_A Cell division control p 51.0 28 0.00094 28.1 5.8 29 22-50 130-159 (387)
115 1sxj_D Activator 1 41 kDa subu 49.5 18 0.00062 29.0 4.4 44 21-66 132-175 (353)
116 3e1s_A Exodeoxyribonuclease V, 48.1 21 0.00071 31.9 4.9 38 21-62 278-315 (574)
117 2orw_A Thymidine kinase; TMTK, 47.9 45 0.0016 24.7 6.2 38 22-63 76-113 (184)
118 1jr3_A DNA polymerase III subu 47.4 16 0.00055 29.6 3.8 38 21-59 118-155 (373)
119 3bos_A Putative DNA replicatio 47.1 9.5 0.00033 28.6 2.2 43 21-63 103-147 (242)
120 1fnn_A CDC6P, cell division co 46.6 14 0.00047 30.1 3.3 27 22-49 125-151 (389)
121 1w1w_A Structural maintenance 45.9 14 0.00048 31.3 3.3 41 21-61 354-395 (430)
122 1a5t_A Delta prime, HOLB; zinc 45.7 18 0.00061 29.5 3.8 44 21-66 107-150 (334)
123 2qby_B CDC6 homolog 3, cell di 44.2 18 0.00062 29.4 3.6 26 25-50 136-162 (384)
124 1sxj_B Activator 1 37 kDa subu 43.1 15 0.00051 29.0 2.8 38 22-60 107-144 (323)
125 3te6_A Regulatory protein SIR3 42.9 22 0.00074 29.4 3.9 40 21-63 131-173 (318)
126 2gno_A DNA polymerase III, gam 42.8 18 0.00062 29.4 3.4 47 20-68 80-126 (305)
127 3n70_A Transport activator; si 40.2 27 0.00094 24.5 3.7 38 24-63 78-115 (145)
128 3hu3_A Transitional endoplasmi 40.0 30 0.001 30.2 4.5 43 23-65 298-350 (489)
129 2qen_A Walker-type ATPase; unk 39.8 27 0.00093 27.7 4.0 36 23-59 129-170 (350)
130 4ad8_A DNA repair protein RECN 38.1 10 0.00035 33.2 1.1 38 24-61 419-456 (517)
131 2b8t_A Thymidine kinase; deoxy 37.9 61 0.0021 25.1 5.6 51 5-61 74-124 (223)
132 3upu_A ATP-dependent DNA helic 37.4 42 0.0014 28.6 5.0 38 19-60 125-162 (459)
133 1f2t_B RAD50 ABC-ATPase; DNA d 36.9 27 0.00092 25.2 3.2 40 21-60 80-120 (148)
134 2zjd_A Microtubule-associated 36.3 1.2E+02 0.004 21.7 7.2 68 120-187 23-91 (130)
135 1w5s_A Origin recognition comp 35.5 27 0.00092 28.6 3.3 15 23-37 139-153 (412)
136 3eie_A Vacuolar protein sortin 35.4 43 0.0015 26.9 4.5 14 23-36 111-124 (322)
137 3cf0_A Transitional endoplasmi 34.5 41 0.0014 26.8 4.2 41 23-63 109-162 (301)
138 3b9p_A CG5977-PA, isoform A; A 34.1 41 0.0014 26.3 4.1 16 22-37 113-128 (297)
139 3h9d_A ATG8, microtubule-assoc 32.3 1.3E+02 0.0044 21.1 6.9 67 120-187 19-85 (119)
140 8tfv_A Protein (thanatin); bac 32.0 11 0.00038 18.0 0.2 9 180-188 6-14 (21)
141 1sxj_A Activator 1 95 kDa subu 31.6 52 0.0018 28.6 4.7 41 21-63 147-189 (516)
142 2fna_A Conserved hypothetical 31.5 57 0.002 25.7 4.7 35 24-59 139-176 (357)
143 2chq_A Replication factor C sm 31.5 14 0.00048 29.1 0.9 16 21-36 101-116 (319)
144 1jr3_D DNA polymerase III, del 31.4 47 0.0016 26.8 4.2 44 20-63 74-117 (343)
145 3kl4_A SRP54, signal recogniti 30.1 46 0.0016 28.7 4.0 56 21-76 178-236 (433)
146 2qz4_A Paraplegin; AAA+, SPG7, 30.1 57 0.0019 24.7 4.2 14 23-36 99-112 (262)
147 1sgw_A Putative ABC transporte 29.7 9.9 0.00034 29.4 -0.3 55 20-74 149-203 (214)
148 2qp9_X Vacuolar protein sortin 29.4 57 0.0019 26.8 4.4 15 22-36 143-157 (355)
149 3d8b_A Fidgetin-like protein 1 28.2 44 0.0015 27.4 3.5 15 22-36 176-190 (357)
150 4a15_A XPD helicase, ATP-depen 28.2 20 0.0007 32.2 1.5 14 23-36 205-218 (620)
151 2ehv_A Hypothetical protein PH 28.1 29 0.001 26.1 2.2 47 21-67 134-185 (251)
152 2olj_A Amino acid ABC transpor 27.1 25 0.00086 27.9 1.7 53 20-72 175-227 (263)
153 1ofh_A ATP-dependent HSL prote 26.8 91 0.0031 24.1 5.0 16 22-37 116-131 (310)
154 3pfi_A Holliday junction ATP-d 26.5 66 0.0022 25.6 4.2 37 5-47 94-130 (338)
155 1ji0_A ABC transporter; ATP bi 26.5 23 0.0008 27.5 1.4 53 20-72 155-207 (240)
156 2nq2_C Hypothetical ABC transp 26.0 26 0.00088 27.6 1.5 53 20-72 144-197 (253)
157 2ixe_A Antigen peptide transpo 25.6 65 0.0022 25.5 3.9 42 20-61 172-214 (271)
158 3uk6_A RUVB-like 2; hexameric 25.4 75 0.0026 25.5 4.4 12 24-35 191-202 (368)
159 2pjz_A Hypothetical protein ST 25.3 38 0.0013 26.9 2.5 50 20-72 144-193 (263)
160 2yz2_A Putative ABC transporte 24.3 22 0.00075 28.2 0.8 52 20-71 154-205 (266)
161 1tue_A Replication protein E1; 24.2 47 0.0016 25.9 2.7 30 21-50 102-131 (212)
162 3lhi_A Putative 6-phosphogluco 24.1 38 0.0013 26.4 2.2 46 3-51 44-94 (232)
163 1eo6_A GATE-16, golgi-associat 24.1 1.8E+02 0.0062 20.1 6.9 66 121-187 17-82 (117)
164 1ye8_A Protein THEP1, hypothet 23.6 71 0.0024 23.4 3.6 30 20-49 97-128 (178)
165 3lwd_A 6-phosphogluconolactona 23.3 41 0.0014 26.2 2.2 41 3-46 43-87 (226)
166 3vfd_A Spastin; ATPase, microt 22.9 73 0.0025 26.3 3.9 13 24-36 209-221 (389)
167 4gdk_A Ubiquitin-like protein 22.6 1.1E+02 0.0038 20.3 4.0 41 147-187 17-57 (91)
168 3nwp_A 6-phosphogluconolactona 22.6 41 0.0014 26.3 2.1 46 3-51 47-97 (233)
169 2w0m_A SSO2452; RECA, SSPF, un 22.1 62 0.0021 23.8 3.0 44 21-64 120-168 (235)
170 2d2e_A SUFC protein; ABC-ATPas 21.8 65 0.0022 25.1 3.1 42 21-62 160-201 (250)
171 1vpl_A ABC transporter, ATP-bi 21.7 21 0.00073 28.2 0.3 43 20-62 162-204 (256)
172 3qkt_A DNA double-strand break 21.5 70 0.0024 26.0 3.4 40 21-60 271-311 (339)
173 2qi9_C Vitamin B12 import ATP- 21.4 36 0.0012 26.8 1.5 48 25-72 154-201 (249)
174 2c9o_A RUVB-like 1; hexameric 21.2 95 0.0033 26.3 4.3 24 24-51 297-320 (456)
175 1xwi_A SKD1 protein; VPS4B, AA 21.1 86 0.0029 25.2 3.9 15 22-36 105-119 (322)
176 2ff7_A Alpha-hemolysin translo 20.9 51 0.0018 25.7 2.4 42 20-62 161-202 (247)
177 1lv7_A FTSH; alpha/beta domain 20.6 1.4E+02 0.0048 22.6 4.9 14 23-36 105-118 (257)
178 2zu0_C Probable ATP-dependent 20.4 77 0.0026 25.0 3.4 41 21-61 181-221 (267)
179 2r62_A Cell division protease 20.0 26 0.0009 27.0 0.5 14 23-36 104-117 (268)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.84 E-value=5.4e-21 Score=167.53 Aligned_cols=126 Identities=31% Similarity=0.412 Sum_probs=109.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhC--CCCCcEEEEeecCCchHHHHHHhhcccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAV--PKQKQTLLFSATMTDTLEQVKSITKKQV 78 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l--~~~~Q~il~SATl~~~v~~l~~~~l~~p 78 (189)
+|||||||.+++.. +.+.+++++++|+||||+|++.||.+++..|+..+ ++.+|+++||||+|.++.++++.++.+
T Consensus 183 vv~Tp~~l~~~l~~-~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~- 260 (434)
T 2db3_A 183 VIATPGRLLDFVDR-TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKN- 260 (434)
T ss_dssp EEECHHHHHHHHHT-TSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSS-
T ss_pred EEEChHHHHHHHHh-CCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccC-
Confidence 58999999999988 78899999999999999999999999999999885 578999999999999999999999987
Q ss_pred ceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecC
Q psy9740 79 GTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPY 158 (189)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~ 158 (189)
+..+...........+.|.++.++.
T Consensus 261 -------------------------------------------------------~~~i~~~~~~~~~~~i~~~~~~~~~ 285 (434)
T 2db3_A 261 -------------------------------------------------------YVFVAIGIVGGACSDVKQTIYEVNK 285 (434)
T ss_dssp -------------------------------------------------------CEEEEESSTTCCCTTEEEEEEECCG
T ss_pred -------------------------------------------------------CEEEEeccccccccccceEEEEeCc
Confidence 3333444444556788999999999
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 159 DVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 159 ~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
..|...|.+++.... .++||||||+
T Consensus 286 ~~k~~~l~~~l~~~~-----~~~lVF~~t~ 310 (434)
T 2db3_A 286 YAKRSKLIEILSEQA-----DGTIVFVETK 310 (434)
T ss_dssp GGHHHHHHHHHHHCC-----TTEEEECSSH
T ss_pred HHHHHHHHHHHHhCC-----CCEEEEEeCc
Confidence 999999999987642 3499999986
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.78 E-value=7.1e-19 Score=151.13 Aligned_cols=127 Identities=29% Similarity=0.395 Sum_probs=108.9
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+|||||+|.+++.. +.+.+++++++|+||||.|++.+|...+..++..+++..|++++|||++.++.++++.++.+|
T Consensus 159 vv~Tp~~l~~~l~~-~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-- 235 (410)
T 2j0s_A 159 VAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDP-- 235 (410)
T ss_dssp EEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSC--
T ss_pred EEcCHHHHHHHHHh-CCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCC--
Confidence 58999999999988 788899999999999999999999999999999999999999999999999998888888773
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
..+..........++.+++..++...
T Consensus 236 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (410)
T 2j0s_A 236 ------------------------------------------------------IRILVKRDELTLEGIKQFFVAVEREE 261 (410)
T ss_dssp ------------------------------------------------------EEECCCGGGCSCTTEEEEEEEESSTT
T ss_pred ------------------------------------------------------EEEEecCccccCCCceEEEEEeCcHH
Confidence 33333444445678889999887655
Q ss_pred -hHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 161 -KDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 161 -K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
|...|.++++... .+++||||||+
T Consensus 262 ~k~~~l~~~~~~~~----~~~~lVf~~~~ 286 (410)
T 2j0s_A 262 WKFDTLCDLYDTLT----ITQAVIFCNTK 286 (410)
T ss_dssp HHHHHHHHHHHHHT----SSEEEEECSSH
T ss_pred hHHHHHHHHHHhcC----CCcEEEEEcCH
Confidence 8888888887754 67999999986
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=147.96 Aligned_cols=128 Identities=28% Similarity=0.435 Sum_probs=106.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhh--CCC--CCcEEEEeecCCchHHHHHHhhcc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGA--VPK--QKQTLLFSATMTDTLEQVKSITKK 76 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~--l~~--~~Q~il~SATl~~~v~~l~~~~l~ 76 (189)
+|||||+|.+++.. +.+.+++++++|+||||.|++.+|.+.+..++.. ++. .+|++++|||++.++..+++.++.
T Consensus 155 ~v~Tp~~l~~~l~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 233 (417)
T 2i4i_A 155 LVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLD 233 (417)
T ss_dssp EEECHHHHHHHHHT-TSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCS
T ss_pred EEEChHHHHHHHHc-CCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcC
Confidence 58999999999988 7888999999999999999999999999999985 443 689999999999999999998888
Q ss_pred ccceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEe
Q psy9740 77 QVGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLC 156 (189)
Q Consensus 77 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~ 156 (189)
+ +..+.........+++.+.++.+
T Consensus 234 ~--------------------------------------------------------~~~~~~~~~~~~~~~i~~~~~~~ 257 (417)
T 2i4i_A 234 E--------------------------------------------------------YIFLAVGRVGSTSENITQKVVWV 257 (417)
T ss_dssp S--------------------------------------------------------CEEEEEC----CCSSEEEEEEEC
T ss_pred C--------------------------------------------------------CEEEEeCCCCCCccCceEEEEEe
Confidence 7 33333344445567888999999
Q ss_pred cCcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 157 PYDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 157 ~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
+...|...|.++++.. ...+++||||||+
T Consensus 258 ~~~~~~~~l~~~l~~~---~~~~~~lVf~~~~ 286 (417)
T 2i4i_A 258 EESDKRSFLLDLLNAT---GKDSLTLVFVETK 286 (417)
T ss_dssp CGGGHHHHHHHHHHTC---CTTCEEEEECSSH
T ss_pred ccHhHHHHHHHHHHhc---CCCCeEEEEECCH
Confidence 9999999999888763 3468999999986
No 4
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=153.12 Aligned_cols=129 Identities=31% Similarity=0.404 Sum_probs=75.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhc-cccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS-GIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~-~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
+|||||+|.+++...+.+.+++++++|+||||.|++ .+|...+..|+..+++++|++++|||++.++..++..++.+
T Consensus 214 vv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-- 291 (479)
T 3fmp_B 214 VIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPD-- 291 (479)
T ss_dssp EEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSS--
T ss_pred EEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCC--
Confidence 589999999999775678899999999999999997 68999999999999999999999999999999999999988
Q ss_pred eeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecC-
Q psy9740 80 TLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPY- 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~- 158 (189)
+..+...........+.|+++.++.
T Consensus 292 ------------------------------------------------------~~~i~~~~~~~~~~~~~~~~~~~~~~ 317 (479)
T 3fmp_B 292 ------------------------------------------------------PNVIKLKREEETLDTIKQYYVLCSSR 317 (479)
T ss_dssp ------------------------------------------------------EEEEEEC-------------------
T ss_pred ------------------------------------------------------CeEEeccccccCcCCceEEEEEeCCH
Confidence 4444455555567788899988875
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 159 DVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 159 ~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
..|...|..++.... .+++||||+|++
T Consensus 318 ~~~~~~l~~~~~~~~----~~~~lvF~~s~~ 344 (479)
T 3fmp_B 318 DEKFQALCNLYGAIT----IAQAMIFCHTRK 344 (479)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHhhcc----CCceEEEeCcHH
Confidence 568777777776543 679999999974
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=146.31 Aligned_cols=127 Identities=31% Similarity=0.410 Sum_probs=109.2
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+|||||+|.+++.. +.+.+++++++|+||||.|++.+|...+..++..++++.|++++|||++.++.++++.++.+
T Consensus 163 iv~T~~~l~~~l~~-~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--- 238 (414)
T 3eiq_A 163 IVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRD--- 238 (414)
T ss_dssp EEECHHHHHHHHHH-TSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSS---
T ss_pred EEECHHHHHHHHHc-CCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCC---
Confidence 58999999999988 88889999999999999999999999999999999999999999999999999999999987
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
+..+...........+.++++.++...
T Consensus 239 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (414)
T 3eiq_A 239 -----------------------------------------------------PIRILVKKEELTLEGIRQFYINVEREE 265 (414)
T ss_dssp -----------------------------------------------------CEEECCCCCCCCTTSCCEEEEECSSST
T ss_pred -----------------------------------------------------CEEEEecCCccCCCCceEEEEEeChHH
Confidence 333444455556678889888887654
Q ss_pred -hHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 161 -KDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 161 -K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
|...|.++++.. ..+++||||||+
T Consensus 266 ~~~~~l~~~~~~~----~~~~~lvf~~~~ 290 (414)
T 3eiq_A 266 WKLDTLCDLYETL----TITQAVIFINTR 290 (414)
T ss_dssp THHHHHHHHHHSS----CCSSCEEECSCH
T ss_pred hHHHHHHHHHHhC----CCCcEEEEeCCH
Confidence 888888877654 368999999986
No 6
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.73 E-value=1.6e-17 Score=141.97 Aligned_cols=128 Identities=31% Similarity=0.400 Sum_probs=109.1
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhc-cccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS-GIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~-~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
+|||||+|.+++...+.+.+++++++|+||||.|++ .+|...+..+...++++.|++++|||++..+..++..++.+
T Consensus 147 vv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-- 224 (412)
T 3fht_A 147 VIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPD-- 224 (412)
T ss_dssp EEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSS--
T ss_pred EEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCC--
Confidence 589999999999765778899999999999999997 68999999999999999999999999999999999999887
Q ss_pred eeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecC-
Q psy9740 80 TLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPY- 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~- 158 (189)
+..+...........+.++++.++.
T Consensus 225 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (412)
T 3fht_A 225 ------------------------------------------------------PNVIKLKREEETLDTIKQYYVLCSSR 250 (412)
T ss_dssp ------------------------------------------------------CEEECCCGGGSSCTTEEEEEEECSSH
T ss_pred ------------------------------------------------------CeEEeeccccccccCceEEEEEcCCh
Confidence 4444445555567788888888876
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 159 DVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 159 ~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
..|...|.+++.... .+++||||||+
T Consensus 251 ~~~~~~l~~~~~~~~----~~~~lvf~~~~ 276 (412)
T 3fht_A 251 DEKFQALCNLYGAIT----IAQAMIFCHTR 276 (412)
T ss_dssp HHHHHHHHHHHHHHS----SSEEEEECSSH
T ss_pred HHHHHHHHHHHhhcC----CCCEEEEeCCH
Confidence 458888888887654 68999999986
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.71 E-value=4.1e-17 Score=138.75 Aligned_cols=127 Identities=27% Similarity=0.421 Sum_probs=107.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhc-cccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS-GIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~-~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
+|+||+++..++.. +.+.+++++++|+||||.+++ .+|...+..++..+++..|++++|||++..+.++++.++.+|.
T Consensus 132 iv~T~~~l~~~~~~-~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 210 (391)
T 1xti_A 132 VVGTPGRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM 210 (391)
T ss_dssp EEECHHHHHHHHHT-TSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCE
T ss_pred EEECHHHHHHHHHc-CCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCe
Confidence 58999999999987 778899999999999999998 4899999999999999999999999999999999999888742
Q ss_pred eeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecC-ccccchhhcceeEEEecC
Q psy9740 80 TLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESK-QDVATVEELDQYYVLCPY 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~q~~~~~~~ 158 (189)
.+... ........+.+++..++.
T Consensus 211 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 234 (391)
T 1xti_A 211 --------------------------------------------------------EIFVDDETKLTLHGLQQYYVKLKD 234 (391)
T ss_dssp --------------------------------------------------------EEECCCCCCCCCTTCEEEEEECCG
T ss_pred --------------------------------------------------------EEEecCccccCcccceEEEEEcCc
Confidence 12222 222345678889999998
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 159 DVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 159 ~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
..|...|.++++.. ..+++||||+|+
T Consensus 235 ~~~~~~l~~~l~~~----~~~~~lvf~~~~ 260 (391)
T 1xti_A 235 NEKNRKLFDLLDVL----EFNQVVIFVKSV 260 (391)
T ss_dssp GGHHHHHHHHHHHS----CCSEEEEECSCH
T ss_pred hhHHHHHHHHHHhc----CCCcEEEEeCcH
Confidence 89999999888764 478999999985
No 8
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=139.97 Aligned_cols=84 Identities=30% Similarity=0.397 Sum_probs=77.6
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhc-cccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS-GIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~-~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
||||||||++++...+.+.+++++++|+||||.|++ .+|...+..|+..+++++|+++||||+|.++..+++.++++|.
T Consensus 214 lV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~ 293 (300)
T 3fmo_B 214 VIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN 293 (300)
T ss_dssp EEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCE
T ss_pred EEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCe
Confidence 699999999999765678899999999999999998 7899999999999999999999999999999999999999987
Q ss_pred eeeee
Q psy9740 80 TLLFS 84 (189)
Q Consensus 80 ~~~~~ 84 (189)
.+.+.
T Consensus 294 ~i~~~ 298 (300)
T 3fmo_B 294 VIKLK 298 (300)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 66553
No 9
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.70 E-value=3e-17 Score=132.77 Aligned_cols=84 Identities=39% Similarity=0.541 Sum_probs=78.7
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+|||||+|.+++.. +...+++++++|+||||.|++.+|.+++..|++.+++++|+++||||+|.+++++++.++++|..
T Consensus 156 ~v~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~ 234 (242)
T 3fe2_A 156 CIATPGRLIDFLEC-GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIH 234 (242)
T ss_dssp EEECHHHHHHHHHH-TSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEE
T ss_pred EEECHHHHHHHHHc-CCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEE
Confidence 58999999999988 78899999999999999999999999999999999999999999999999999999999999876
Q ss_pred eeeec
Q psy9740 81 LLFSA 85 (189)
Q Consensus 81 ~~~~~ 85 (189)
+.+..
T Consensus 235 i~~~~ 239 (242)
T 3fe2_A 235 INIGA 239 (242)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 66554
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.70 E-value=3e-17 Score=139.54 Aligned_cols=128 Identities=34% Similarity=0.472 Sum_probs=74.1
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+||||++|.+++.. +.+.+.+++++|+||||.+++.+|...+..++..+++..|++++|||++..+.++...++.+|.
T Consensus 142 ~v~T~~~l~~~~~~-~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~- 219 (394)
T 1fuu_A 142 VVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPV- 219 (394)
T ss_dssp EEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCE-
T ss_pred EEECHHHHHHHHHh-CCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCe-
Confidence 58999999999987 7788999999999999999999999999999999999999999999999999999888888742
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
.+..........++.+++..++...
T Consensus 220 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (394)
T 1fuu_A 220 -------------------------------------------------------RILVKKDELTLEGIKQFYVNVEEEE 244 (394)
T ss_dssp -------------------------------------------------------EEEECC-------------------
T ss_pred -------------------------------------------------------EEEecCccccCCCceEEEEEcCchh
Confidence 2222333344566777777776544
Q ss_pred -hHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 161 -KDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 161 -K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
|...+.++++... .+++||||||++
T Consensus 245 ~~~~~l~~~~~~~~----~~~~lVf~~~~~ 270 (394)
T 1fuu_A 245 YKYECLTDLYDSIS----VTQAVIFCNTRR 270 (394)
T ss_dssp ------------------------------
T ss_pred hHHHHHHHHHhcCC----CCcEEEEECCHH
Confidence 7777777776543 679999999864
No 11
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.69 E-value=1.4e-16 Score=136.11 Aligned_cols=126 Identities=25% Similarity=0.375 Sum_probs=105.5
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+||||++|.+++.. +...+++++++|+||||.+++.+|...+..++..+++..|++++|||+|..+.+....++.+|
T Consensus 143 vv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~-- 219 (400)
T 1s2m_A 143 LVGTPGRVLDLASR-KVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKP-- 219 (400)
T ss_dssp EEECHHHHHHHHHT-TCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSC--
T ss_pred EEEchHHHHHHHHh-CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCC--
Confidence 58999999999987 778899999999999999999999999999999999999999999999999998888887763
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
..+... ......++.+++..++...
T Consensus 220 ------------------------------------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~ 244 (400)
T 1s2m_A 220 ------------------------------------------------------YEINLM-EELTLKGITQYYAFVEERQ 244 (400)
T ss_dssp ------------------------------------------------------EEESCC-SSCBCTTEEEEEEECCGGG
T ss_pred ------------------------------------------------------eEEEec-cccccCCceeEEEEechhh
Confidence 111111 1233567888888888888
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 161 KDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 161 K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
|...+..+++.. ..+++||||||+
T Consensus 245 k~~~l~~~~~~~----~~~~~lVf~~~~ 268 (400)
T 1s2m_A 245 KLHCLNTLFSKL----QINQAIIFCNST 268 (400)
T ss_dssp HHHHHHHHHHHS----CCSEEEEECSSH
T ss_pred HHHHHHHHHhhc----CCCcEEEEEecH
Confidence 988888888764 368999999985
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.68 E-value=1.7e-16 Score=134.55 Aligned_cols=127 Identities=30% Similarity=0.422 Sum_probs=103.8
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhc-cccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS-GIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~-~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
+||||++|.+++.. +.+.+++++++|+||||.+.+ .++...+..+...++++.|++++|||++..+..+++.++.++
T Consensus 125 iv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~- 202 (395)
T 3pey_A 125 IVGTPGTVLDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNA- 202 (395)
T ss_dssp EEECHHHHHHHHHT-TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSC-
T ss_pred EEEcHHHHHHHHHc-CCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCC-
Confidence 58999999999987 788899999999999999998 689999999999999999999999999999999999888773
Q ss_pred eeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecC-
Q psy9740 80 TLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPY- 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~- 158 (189)
..+...........+.+.+..+..
T Consensus 203 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (395)
T 3pey_A 203 -------------------------------------------------------NTLELQTNEVNVDAIKQLYMDCKNE 227 (395)
T ss_dssp -------------------------------------------------------EEECCCGGGCSCTTEEEEEEECSSH
T ss_pred -------------------------------------------------------eEEEccccccccccccEEEEEcCch
Confidence 233333444445677888888765
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 159 DVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 159 ~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
..|...+..+++. ...+++||||||+
T Consensus 228 ~~~~~~l~~~~~~----~~~~~~lvf~~~~ 253 (395)
T 3pey_A 228 ADKFDVLTELYGL----MTIGSSIIFVATK 253 (395)
T ss_dssp HHHHHHHHHHHTT----TTSSEEEEECSCH
T ss_pred HHHHHHHHHHHHh----ccCCCEEEEeCCH
Confidence 4566666666654 3478999999986
No 13
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=7.1e-17 Score=145.92 Aligned_cols=136 Identities=30% Similarity=0.394 Sum_probs=99.5
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCC-------CCcEEEEeecCCchHHHHHHh
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-------QKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-------~~Q~il~SATl~~~v~~l~~~ 73 (189)
||||||+|.+++.......++.++++|+||||.|+++||.+++..|+..+++ .+|+++||||+++.+.++++.
T Consensus 154 lV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~ 233 (579)
T 3sqw_A 154 VIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANN 233 (579)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTT
T ss_pred EEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHH
Confidence 6899999999998633557899999999999999999999999999887643 779999999999999999999
Q ss_pred hccccceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeE
Q psy9740 74 TKKQVGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYY 153 (189)
Q Consensus 74 ~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~ 153 (189)
++.+|..+.+... ..........+.+.+
T Consensus 234 ~l~~~~~~~~~~~----------------------------------------------------~~~~~~~~~~i~~~~ 261 (579)
T 3sqw_A 234 IMNKKECLFLDTV----------------------------------------------------DKNEPEAHERIDQSV 261 (579)
T ss_dssp TCCSSEEEEEESS----------------------------------------------------CSSSCSSCTTEEEEE
T ss_pred HcCCCceEEEeec----------------------------------------------------CccccccccccceEE
Confidence 9988532111110 012233356677877
Q ss_pred EEecCc-chHHH-HHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 154 VLCPYD-VKDGY-LVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 154 ~~~~~~-~K~~~-L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
..++.. .+... +..+.+......+..++||||+|+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~ 298 (579)
T 3sqw_A 262 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTV 298 (579)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSH
T ss_pred EEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcH
Confidence 777653 33333 333333333346678999999986
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.67 E-value=7.6e-17 Score=144.53 Aligned_cols=136 Identities=32% Similarity=0.418 Sum_probs=99.0
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCC-------CCCcEEEEeecCCchHHHHHHh
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVP-------KQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~-------~~~Q~il~SATl~~~v~~l~~~ 73 (189)
||||||+|.+++.......++.++++|+||||.|++++|.+.+..|+..++ ..+|++++|||++..+.+++..
T Consensus 205 iv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~ 284 (563)
T 3i5x_A 205 VIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANN 284 (563)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTT
T ss_pred EEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHH
Confidence 689999999999863345789999999999999999999999999987764 3779999999999999999999
Q ss_pred hccccceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeE
Q psy9740 74 TKKQVGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYY 153 (189)
Q Consensus 74 ~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~ 153 (189)
++.+|..+.+... ..........+.+.+
T Consensus 285 ~~~~~~~~~~~~~----------------------------------------------------~~~~~~~~~~~~~~~ 312 (563)
T 3i5x_A 285 IMNKKECLFLDTV----------------------------------------------------DKNEPEAHERIDQSV 312 (563)
T ss_dssp TCCSSEEEEEESS----------------------------------------------------CSSSCSSCTTEEEEE
T ss_pred hcCCCceEEEecc----------------------------------------------------CCCCccccccCceEE
Confidence 9987532211110 012233356677777
Q ss_pred EEecCc-chHHHHHHHH-HHHHhcCCCCeEEEEecCC
Q psy9740 154 VLCPYD-VKDGYLVETV-RLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 154 ~~~~~~-~K~~~L~~lL-~~~~~~~~~~~~iIF~ns~ 188 (189)
..++.. .+...+...+ +.........++||||+|+
T Consensus 313 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~ 349 (563)
T 3i5x_A 313 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTV 349 (563)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCH
T ss_pred EECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcH
Confidence 777653 3333333333 3333346678999999986
No 15
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=128.12 Aligned_cols=81 Identities=40% Similarity=0.526 Sum_probs=76.1
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+|||||++.+++.. +.+.+++++++|+||||.|++.+|.+.+..|+..+++++|++++|||+|++++++++.++++|..
T Consensus 147 iv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~ 225 (228)
T 3iuy_A 147 IIATPGRLNDLQMN-NSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMI 225 (228)
T ss_dssp EEECHHHHHHHHHT-TCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEE
T ss_pred EEECHHHHHHHHHc-CCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEE
Confidence 58999999999987 88899999999999999999999999999999999999999999999999999999999999864
Q ss_pred ee
Q psy9740 81 LL 82 (189)
Q Consensus 81 ~~ 82 (189)
++
T Consensus 226 i~ 227 (228)
T 3iuy_A 226 VY 227 (228)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 16
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.67 E-value=9.6e-17 Score=130.31 Aligned_cols=77 Identities=40% Similarity=0.653 Sum_probs=71.2
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhh--CCC--CCcEEEEeecCCchHHHHHHhhcc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGA--VPK--QKQTLLFSATMTDTLEQVKSITKK 76 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~--l~~--~~Q~il~SATl~~~v~~l~~~~l~ 76 (189)
+|||||+|.+++.. +.+.+++++++|+||||.|++.+|.+++..|+.. +++ ++|++++|||++.++.++++.++.
T Consensus 154 vv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~ 232 (253)
T 1wrb_A 154 LVATPGRLVDFIEK-NKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLY 232 (253)
T ss_dssp EEECHHHHHHHHHT-TSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCS
T ss_pred EEECHHHHHHHHHc-CCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcC
Confidence 58999999999988 7788999999999999999999999999999995 454 789999999999999999999999
Q ss_pred cc
Q psy9740 77 QV 78 (189)
Q Consensus 77 ~p 78 (189)
+|
T Consensus 233 ~~ 234 (253)
T 1wrb_A 233 NY 234 (253)
T ss_dssp SC
T ss_pred CC
Confidence 84
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.65 E-value=8.4e-16 Score=128.97 Aligned_cols=122 Identities=29% Similarity=0.414 Sum_probs=102.7
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+|+||++|.+++.. +.+.+++++++|+||||.+.+.+|...+..++..+++..|++++|||++.++.+..+.++.+
T Consensus 127 iv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--- 202 (367)
T 1hv8_A 127 VVGTPGRILDHINR-GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGD--- 202 (367)
T ss_dssp EEECHHHHHHHHHT-TCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCS---
T ss_pred EEecHHHHHHHHHc-CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCC---
Confidence 58999999999987 77889999999999999999999999999999999999999999999999999888888876
Q ss_pred eeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcc
Q psy9740 81 LLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDV 160 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 160 (189)
...+... ....+.+.++.++...
T Consensus 203 -----------------------------------------------------~~~~~~~----~~~~~~~~~~~~~~~~ 225 (367)
T 1hv8_A 203 -----------------------------------------------------YSFIKAK----INANIEQSYVEVNENE 225 (367)
T ss_dssp -----------------------------------------------------EEEEECC----SSSSSEEEEEECCGGG
T ss_pred -----------------------------------------------------CeEEEec----CCCCceEEEEEeChHH
Confidence 2222211 1236778888888888
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 161 KDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 161 K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
|...|.++++ ....++||||+|+
T Consensus 226 ~~~~l~~~l~-----~~~~~~lvf~~~~ 248 (367)
T 1hv8_A 226 RFEALCRLLK-----NKEFYGLVFCKTK 248 (367)
T ss_dssp HHHHHHHHHC-----STTCCEEEECSSH
T ss_pred HHHHHHHHHh-----cCCCcEEEEECCH
Confidence 9888888775 3467999999985
No 18
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.64 E-value=3.6e-16 Score=126.15 Aligned_cols=82 Identities=37% Similarity=0.493 Sum_probs=76.0
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+|||||+|.+++.. +.+.+++++++|+||||.|++.+|...+..|+..+++.+|++++|||+|+++.++++.++++|..
T Consensus 153 lv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~ 231 (237)
T 3bor_A 153 VVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIR 231 (237)
T ss_dssp EEECHHHHHHHHHT-TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEE
T ss_pred EEECHHHHHHHHHh-CCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEE
Confidence 58999999999987 78889999999999999999999999999999999999999999999999999999999999865
Q ss_pred eee
Q psy9740 81 LLF 83 (189)
Q Consensus 81 ~~~ 83 (189)
+.+
T Consensus 232 i~v 234 (237)
T 3bor_A 232 ILV 234 (237)
T ss_dssp EC-
T ss_pred EEe
Confidence 544
No 19
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.63 E-value=5.8e-16 Score=123.11 Aligned_cols=81 Identities=31% Similarity=0.445 Sum_probs=75.9
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+|||||++.+++.. +.+.+++++++|+||||.|++.+|...+..|++.+++++|++++|||+|.++.++++.++.+|..
T Consensus 130 iv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~ 208 (219)
T 1q0u_A 130 VIGTPGRINDFIRE-QALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTF 208 (219)
T ss_dssp EEECHHHHHHHHHT-TCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEE
T ss_pred EEeCHHHHHHHHHc-CCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeE
Confidence 58999999999987 78889999999999999999999999999999999999999999999999999999999999864
Q ss_pred ee
Q psy9740 81 LL 82 (189)
Q Consensus 81 ~~ 82 (189)
+.
T Consensus 209 ~~ 210 (219)
T 1q0u_A 209 VH 210 (219)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 20
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.63 E-value=4.5e-16 Score=127.81 Aligned_cols=79 Identities=41% Similarity=0.682 Sum_probs=73.7
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
+|||||++.+++.....+.+++++++|+||||.|++.+|.+.+..|++.+++.+|++++|||+|.+++++++.++++|.
T Consensus 180 iv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 180 IVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp EEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred EEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 5899999999998755688999999999999999999999999999999999999999999999999999999988753
No 21
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.63 E-value=6e-16 Score=124.22 Aligned_cols=84 Identities=37% Similarity=0.628 Sum_probs=76.7
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+|||||+|.+++.....+.+++++++|+||||.|++.+|.+.+..++..+++.+|++++|||++.+++++++.++.+|..
T Consensus 150 iv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~ 229 (236)
T 2pl3_A 150 LVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEY 229 (236)
T ss_dssp EEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEE
T ss_pred EEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEE
Confidence 58999999999887456789999999999999999999999999999999999999999999999999999999999865
Q ss_pred eeee
Q psy9740 81 LLFS 84 (189)
Q Consensus 81 ~~~~ 84 (189)
+.+.
T Consensus 230 i~~~ 233 (236)
T 2pl3_A 230 VWVH 233 (236)
T ss_dssp EECC
T ss_pred EEeC
Confidence 5443
No 22
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.62 E-value=1.8e-15 Score=135.10 Aligned_cols=128 Identities=30% Similarity=0.415 Sum_probs=99.5
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhc-cccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS-GIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~-~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
+||||++|.+++.. +.+.+++++++|+||||.+.+ .+|...+..++..++++.|++++|||++..+..+...++.+
T Consensus 239 vv~T~~~l~~~l~~-~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~-- 315 (508)
T 3fho_A 239 VIGTPGTVMDLMKR-RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPN-- 315 (508)
T ss_dssp EEECHHHHHHHHHT-TCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTT--
T ss_pred EEECHHHHHHHHHc-CCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCC--
Confidence 58999999999987 788899999999999999998 68999999999999999999999999999999999988887
Q ss_pred eeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecC-
Q psy9740 80 TLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPY- 158 (189)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~- 158 (189)
+..+...........+.+.+..+..
T Consensus 316 ------------------------------------------------------~~~i~~~~~~~~~~~~~~~~~~~~~~ 341 (508)
T 3fho_A 316 ------------------------------------------------------ANEIRLKTEELSVEGIKQLYMDCQSE 341 (508)
T ss_dssp ------------------------------------------------------CEEECCCCCC----CCCCEEEEC--C
T ss_pred ------------------------------------------------------CeEEEeccccCCcccceEEEEECCch
Confidence 3333334444455677788877754
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 159 DVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 159 ~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
..|...+..+++.. ..+++||||||++
T Consensus 342 ~~k~~~l~~ll~~~----~~~~~LVF~~s~~ 368 (508)
T 3fho_A 342 EHKYNVLVELYGLL----TIGQSIIFCKKKD 368 (508)
T ss_dssp HHHHHHHHHHHC-------CCCEEEBCSSTT
T ss_pred HHHHHHHHHHHHhc----CCCcEEEEECCHH
Confidence 45777777777654 3789999999974
No 23
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.62 E-value=6.6e-16 Score=123.94 Aligned_cols=80 Identities=29% Similarity=0.491 Sum_probs=74.8
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccc-cHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGI-FDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~-f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
+|||||+|.+++.. +.+.+++++++|+||||.|++.| |.+.+..|++.+++.+|++++|||+|.++.++++.++.+|.
T Consensus 146 iv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~ 224 (230)
T 2oxc_A 146 AVGSPGRIKQLIEL-DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPT 224 (230)
T ss_dssp EEECHHHHHHHHHT-TSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCE
T ss_pred EEECHHHHHHHHhc-CCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCe
Confidence 58999999999987 78889999999999999999998 99999999999999999999999999999999999999875
Q ss_pred ee
Q psy9740 80 TL 81 (189)
Q Consensus 80 ~~ 81 (189)
.+
T Consensus 225 ~i 226 (230)
T 2oxc_A 225 FV 226 (230)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 24
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.62 E-value=8.7e-16 Score=125.23 Aligned_cols=82 Identities=40% Similarity=0.703 Sum_probs=75.8
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+|||||+|.+++...+.+.+++++++|+||||+|++.+|...+..|+..+++.+|++++|||++.+++++++.++.+|..
T Consensus 165 ~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~ 244 (249)
T 3ber_A 165 IIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVK 244 (249)
T ss_dssp EEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEE
T ss_pred EEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEE
Confidence 58999999999987566789999999999999999999999999999999999999999999999999999999999864
Q ss_pred ee
Q psy9740 81 LL 82 (189)
Q Consensus 81 ~~ 82 (189)
+.
T Consensus 245 i~ 246 (249)
T 3ber_A 245 CA 246 (249)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 25
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.60 E-value=1.4e-15 Score=119.11 Aligned_cols=80 Identities=39% Similarity=0.559 Sum_probs=75.2
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+||||+++.+++.. +.+.+++++++|+||||.|++.+|...+..++..+++++|++++|||+|.+++++++.++.+|..
T Consensus 124 ~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~ 202 (207)
T 2gxq_A 124 VVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVL 202 (207)
T ss_dssp EEECHHHHHHHHHH-TSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEE
T ss_pred EEECHHHHHHHHHc-CCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeE
Confidence 58999999999988 88899999999999999999999999999999999999999999999999999999999999754
Q ss_pred e
Q psy9740 81 L 81 (189)
Q Consensus 81 ~ 81 (189)
+
T Consensus 203 i 203 (207)
T 2gxq_A 203 I 203 (207)
T ss_dssp E
T ss_pred E
Confidence 3
No 26
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.60 E-value=1.7e-15 Score=118.74 Aligned_cols=78 Identities=36% Similarity=0.540 Sum_probs=73.9
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
+|||||++.+++.. +...+++++++|+||||.|++.+|...+..++..+++++|++++|||+|.++.++++.++.+|.
T Consensus 126 ~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~ 203 (206)
T 1vec_A 126 VIATPGRILDLIKK-GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPY 203 (206)
T ss_dssp EEECHHHHHHHHHT-TCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred EEeCHHHHHHHHHc-CCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCe
Confidence 58999999999987 7788999999999999999999999999999999999999999999999999999999999874
No 27
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.60 E-value=5.2e-15 Score=122.96 Aligned_cols=76 Identities=30% Similarity=0.465 Sum_probs=71.1
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
+|+||++|.+++.. +.+.+++++++|+||||.+.+.+|...+..++..++...|++++|||+|..+.+....++.+
T Consensus 109 ~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~ 184 (337)
T 2z0m_A 109 VVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITN 184 (337)
T ss_dssp EEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCS
T ss_pred EEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCC
Confidence 58999999999887 77889999999999999999999999999999999999999999999999999888888876
No 28
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.58 E-value=2.8e-15 Score=119.05 Aligned_cols=83 Identities=36% Similarity=0.594 Sum_probs=76.2
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccce
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVGT 80 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~~ 80 (189)
+||||++|.+++.. +.+.+++++++|+||||.|++.+|...+..++..+++..|++++|||++.++.++++.++.+|..
T Consensus 135 iv~Tp~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~ 213 (224)
T 1qde_A 135 VVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVR 213 (224)
T ss_dssp EEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEE
T ss_pred EEECHHHHHHHHHh-CCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEE
Confidence 58999999999988 78889999999999999999999999999999999999999999999999999999999999865
Q ss_pred eeee
Q psy9740 81 LLFS 84 (189)
Q Consensus 81 ~~~~ 84 (189)
+.+.
T Consensus 214 i~~~ 217 (224)
T 1qde_A 214 ILVK 217 (224)
T ss_dssp EC--
T ss_pred EEec
Confidence 5544
No 29
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.57 E-value=4.3e-15 Score=117.86 Aligned_cols=79 Identities=29% Similarity=0.500 Sum_probs=73.7
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhc-cccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS-GIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQVG 79 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~-~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p~ 79 (189)
+|+||+++.+++.. +.+.+++++++|+||||.|++ .+|...+..+++.+++++|++++|||++.+++++++.++.+|.
T Consensus 138 ~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~ 216 (220)
T 1t6n_A 138 VVGTPGRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM 216 (220)
T ss_dssp EEECHHHHHHHHHT-TSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCE
T ss_pred EEeCHHHHHHHHHh-CCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCe
Confidence 58999999999987 778899999999999999997 5899999999999999999999999999999999999999975
Q ss_pred e
Q psy9740 80 T 80 (189)
Q Consensus 80 ~ 80 (189)
.
T Consensus 217 ~ 217 (220)
T 1t6n_A 217 E 217 (220)
T ss_dssp E
T ss_pred E
Confidence 3
No 30
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.55 E-value=8.6e-15 Score=118.04 Aligned_cols=85 Identities=29% Similarity=0.428 Sum_probs=74.0
Q ss_pred CeeehHhhHHHHhcCC-CcccCceeeEEeccchhhhc---cccHHHHHHHHhhCC-CCCcEEEEeecCCchHHHHHHhhc
Q psy9740 1 VIATPGRLADHLDTCN-TFSLNRIKFLVLDEADRLLS---GIFDEQMRTIFGAVP-KQKQTLLFSATMTDTLEQVKSITK 75 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~-~~~l~~l~~lVlDEaD~ll~---~~f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~~l~~~~l 75 (189)
+|||||+|.+++.... .+.+++++++|+||||.|++ .+|.+.+..++..+. .+.|++++|||+|.++.++++.++
T Consensus 153 ~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l 232 (245)
T 3dkp_A 153 LVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNL 232 (245)
T ss_dssp EEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHS
T ss_pred EEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhC
Confidence 5899999999998732 57899999999999999998 579999999998875 588999999999999999999999
Q ss_pred cccceeeeec
Q psy9740 76 KQVGTLLFSA 85 (189)
Q Consensus 76 ~~p~~~~~~~ 85 (189)
++|..+.++.
T Consensus 233 ~~p~~i~~~~ 242 (245)
T 3dkp_A 233 DNVISVSIGA 242 (245)
T ss_dssp SSCEEEEECC
T ss_pred CCCEEEEeCC
Confidence 9987665543
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.53 E-value=4.9e-15 Score=127.89 Aligned_cols=117 Identities=20% Similarity=0.255 Sum_probs=87.5
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccc----------hhhhc-cccHHH-HHHHHhhCC-----------CCCcEE
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEA----------DRLLS-GIFDEQ-MRTIFGAVP-----------KQKQTL 57 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEa----------D~ll~-~~f~~~-i~~Il~~l~-----------~~~Q~i 57 (189)
+|||||+|.+++.. +.+++++++|+||| |+|++ .||.++ +..+++.++ ...|++
T Consensus 121 iv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i 197 (414)
T 3oiy_A 121 LVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILV 197 (414)
T ss_dssp EEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEE
T ss_pred EEECHHHHHHHHHH---hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEE
Confidence 58999999988864 77889999999999 67777 899999 899999887 889999
Q ss_pred EEeec-CCchHHH-HHHhhccccceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCccee
Q psy9740 58 LFSAT-MTDTLEQ-VKSITKKQVGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVF 135 (189)
Q Consensus 58 l~SAT-l~~~v~~-l~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (189)
++||| .|..+.. +.+.++.-
T Consensus 198 ~~SAT~~~~~~~~~~~~~~~~~---------------------------------------------------------- 219 (414)
T 3oiy_A 198 VSSATAKPRGIRPLLFRDLLNF---------------------------------------------------------- 219 (414)
T ss_dssp ESSCCSSCCSSTTHHHHHHHSC----------------------------------------------------------
T ss_pred EEecCCCcchhHHHHHHHhhcc----------------------------------------------------------
Confidence 99999 6666542 22222221
Q ss_pred EeecCccccchhhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 136 VWESKQDVATVEELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 136 ~~~~~~~~~~~~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
..........++.|.++.+ .|...|.++++. . .+++||||||+
T Consensus 220 --~~~~~~~~~~~i~~~~~~~---~~~~~l~~~l~~-~----~~~~lVF~~~~ 262 (414)
T 3oiy_A 220 --TVGRLVSVARNITHVRISS---RSKEKLVELLEI-F----RDGILIFAQTE 262 (414)
T ss_dssp --CSSCCCCCCCSEEEEEESS---CCHHHHHHHHHH-H----CSSEEEEESSH
T ss_pred --CcCccccccccchheeecc---CHHHHHHHHHHH-c----CCCEEEEECCH
Confidence 1122334456778888766 466677888876 2 48999999986
No 32
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.50 E-value=8.4e-15 Score=141.67 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=90.8
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccc----------hhhhc-cccHHH-HHHHHhhCC-----------CCCcEE
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEA----------DRLLS-GIFDEQ-MRTIFGAVP-----------KQKQTL 57 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEa----------D~ll~-~~f~~~-i~~Il~~l~-----------~~~Q~i 57 (189)
||||||+|.+++.. +.+++++++|+||| |+||+ .||.++ +..|++.+| +.+|++
T Consensus 178 lV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~l 254 (1104)
T 4ddu_A 178 LVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILV 254 (1104)
T ss_dssp EEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEE
T ss_pred EEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEE
Confidence 59999999998864 77899999999999 78888 999999 999999888 889999
Q ss_pred EEeec-CCchHHHH-HHhhccccceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCccee
Q psy9740 58 LFSAT-MTDTLEQV-KSITKKQVGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVF 135 (189)
Q Consensus 58 l~SAT-l~~~v~~l-~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (189)
+|||| .|..+... .+.++.
T Consensus 255 l~SAT~~p~~~~~~~~~~~l~----------------------------------------------------------- 275 (1104)
T 4ddu_A 255 VSSATAKPRGIRPLLFRDLLN----------------------------------------------------------- 275 (1104)
T ss_dssp EECBSSCCCSSTTHHHHHHTC-----------------------------------------------------------
T ss_pred EEcCCCCcHHHHHHHhhccee-----------------------------------------------------------
Confidence 99999 56665432 222221
Q ss_pred EeecCccccchhhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy9740 136 VWESKQDVATVEELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189 (189)
Q Consensus 136 ~~~~~~~~~~~~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~~ 189 (189)
+.+........++.|.++.+ .|...|.++|+.. .+++||||||++
T Consensus 276 -i~v~~~~~~~~~i~~~~~~~---~k~~~L~~ll~~~-----~~~~LVF~~s~~ 320 (1104)
T 4ddu_A 276 -FTVGRLVSVARNITHVRISS---RSKEKLVELLEIF-----RDGILIFAQTEE 320 (1104)
T ss_dssp -CCCCBCCCCCCCEEEEEESC---CCHHHHHHHHHHH-----CSSEEEEESSSH
T ss_pred -EEeccCCCCcCCceeEEEec---CHHHHHHHHHHhc-----CCCEEEEECcHH
Confidence 11233344567788888777 4677778888773 489999999973
No 33
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.49 E-value=4.4e-14 Score=132.33 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=59.8
Q ss_pred CeeehHhh-HHHHhcC-----CCcccCceeeEEeccchhhh-ccc---------------cHHHHHHHHhhCC-------
Q psy9740 1 VIATPGRL-ADHLDTC-----NTFSLNRIKFLVLDEADRLL-SGI---------------FDEQMRTIFGAVP------- 51 (189)
Q Consensus 1 lV~TPgrl-~~ll~~~-----~~~~l~~l~~lVlDEaD~ll-~~~---------------f~~~i~~Il~~l~------- 51 (189)
+||||||| .+++..+ +.+.++.++|+|+||||.|| +.+ |.+++..|+..++
T Consensus 176 v~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~v 255 (844)
T 1tf5_A 176 TYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTY 255 (844)
T ss_dssp EEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCC
T ss_pred EEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCccccccee
Confidence 58999999 6776652 24678999999999999999 664 7899999999997
Q ss_pred --CCCcEE-----------------EEeecCCc---hHHHH--HHhhcc
Q psy9740 52 --KQKQTL-----------------LFSATMTD---TLEQV--KSITKK 76 (189)
Q Consensus 52 --~~~Q~i-----------------l~SATl~~---~v~~l--~~~~l~ 76 (189)
+.+|++ |||||++. .+... |+.++.
T Consensus 256 d~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 256 DIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp CSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred ccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 478998 99999874 44443 444444
No 34
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.3e-13 Score=133.33 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=66.9
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCch--HHHHHHhhcccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDT--LEQVKSITKKQV 78 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~--v~~l~~~~l~~p 78 (189)
+|+|||+|.+++.. +...++++++||+||||.|.+.+|...+..++..+++..|++++|||+|.. +.+........|
T Consensus 270 lV~Tpe~L~~~L~~-~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~ 348 (1108)
T 3l9o_A 270 LVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQP 348 (1108)
T ss_dssp EEEEHHHHHHHHHH-CSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSC
T ss_pred EEeChHHHHHHHHc-CccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCC
Confidence 58999999999988 777899999999999999999999999999999999999999999999875 334444444444
No 35
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.45 E-value=2.4e-13 Score=127.28 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=31.2
Q ss_pred CeeehHhh-HHHHhcCC-----CcccCceeeEEeccchhhh-cc---------------ccHHHHHHHHhhCCC
Q psy9740 1 VIATPGRL-ADHLDTCN-----TFSLNRIKFLVLDEADRLL-SG---------------IFDEQMRTIFGAVPK 52 (189)
Q Consensus 1 lV~TPgrl-~~ll~~~~-----~~~l~~l~~lVlDEaD~ll-~~---------------~f~~~i~~Il~~l~~ 52 (189)
+||||||| .+++..+- .+.+++++|+|+||||.|| +. +|..++..|+..+++
T Consensus 167 vvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 167 TYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp EEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--------------------
T ss_pred EEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchh
Confidence 58999999 79888621 3678999999999999999 54 367889999999975
No 36
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.41 E-value=3.1e-14 Score=137.22 Aligned_cols=116 Identities=19% Similarity=0.258 Sum_probs=87.1
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhC-----------CCCCcEEEEeecCCchHHH
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAV-----------PKQKQTLLFSATMTDTLEQ 69 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l-----------~~~~Q~il~SATl~~~v~~ 69 (189)
+|||||+|.+++.. +++++++|+||||.|++ |..+++.++..+ +..+|++++|||++.. ..
T Consensus 159 lV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~ 230 (1054)
T 1gku_B 159 VITTTQFLSKHYRE-----LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KG 230 (1054)
T ss_dssp EEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CC
T ss_pred EEEcHHHHHHHHHH-----hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hh
Confidence 58999999998764 77999999999999999 567888887776 3578999999999988 66
Q ss_pred HHHhhccccceeeeeccccchHHHHHHhhhhhhccccccchhHHHHHhhhhHHHHHHhhcCCcceeEeecCccccchhhc
Q psy9740 70 VKSITKKQVGTLLFSATMTDTLEQVKSITKKQVGTMKKKSSYQAFLLCQQHIVAQIITQLDPVHVFVWESKQDVATVEEL 149 (189)
Q Consensus 70 l~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (189)
++..++.++ ..+.+........++
T Consensus 231 ~~~~~~~~~--------------------------------------------------------~~i~v~~~~~~~~~i 254 (1054)
T 1gku_B 231 KKAELFRQL--------------------------------------------------------LNFDIGSSRITVRNV 254 (1054)
T ss_dssp TTHHHHHHH--------------------------------------------------------HCCCCSCCEECCCCE
T ss_pred HHHHHhhcc--------------------------------------------------------eEEEccCcccCcCCc
Confidence 666666552 112223334445677
Q ss_pred ceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 150 DQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 150 ~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
.|+++ ...|...|.++++.. .+++||||||+
T Consensus 255 ~~~~~---~~~k~~~L~~ll~~~-----~~~~LVF~~t~ 285 (1054)
T 1gku_B 255 EDVAV---NDESISTLSSILEKL-----GTGGIIYARTG 285 (1054)
T ss_dssp EEEEE---SCCCTTTTHHHHTTS-----CSCEEEEESSH
T ss_pred eEEEe---chhHHHHHHHHHhhc-----CCCEEEEEcCH
Confidence 77776 456777777777653 47899999996
No 37
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.40 E-value=1.1e-12 Score=123.41 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=56.9
Q ss_pred CeeehHhh-HHHHhcC-----CCcccCceeeEEeccchhhh-c---------------cccHHHHHHHHhhCC-------
Q psy9740 1 VIATPGRL-ADHLDTC-----NTFSLNRIKFLVLDEADRLL-S---------------GIFDEQMRTIFGAVP------- 51 (189)
Q Consensus 1 lV~TPgrl-~~ll~~~-----~~~~l~~l~~lVlDEaD~ll-~---------------~~f~~~i~~Il~~l~------- 51 (189)
+||||||| .+++..+ +.+.++.+.|+|+||||.|| + .+|..++..|+..++
T Consensus 204 vygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~v 283 (922)
T 1nkt_A 204 TYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEV 283 (922)
T ss_dssp EEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEE
T ss_pred EEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCccccccee
Confidence 58999999 7888762 24678999999999999999 4 358899999999998
Q ss_pred --CCCcEE-----------------EEeecCCch
Q psy9740 52 --KQKQTL-----------------LFSATMTDT 66 (189)
Q Consensus 52 --~~~Q~i-----------------l~SATl~~~ 66 (189)
+.+|++ +||||++.-
T Consensus 284 Dek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l 317 (922)
T 1nkt_A 284 DLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPL 317 (922)
T ss_dssp ETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCH
T ss_pred ccCcceEEecHhHHHHHHHHhCCccccCCcchhH
Confidence 789999 999999863
No 38
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.33 E-value=9.6e-12 Score=119.46 Aligned_cols=71 Identities=13% Similarity=0.181 Sum_probs=63.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHh
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+|+||++|..++.. +...+++++++|+||||.|.+.++...++.++..++++.|++++|||+|.. .+++.+
T Consensus 172 vV~Tpe~L~~~L~~-~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~-~e~a~~ 242 (1010)
T 2xgj_A 172 LVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNA-MEFAEW 242 (1010)
T ss_dssp EEEEHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTH-HHHHHH
T ss_pred EEEcHHHHHHHHHc-CcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCH-HHHHHH
Confidence 58999999999987 778899999999999999999999999999999999999999999998764 344444
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.31 E-value=3.9e-12 Score=121.99 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=64.8
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITK 75 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l 75 (189)
+|+|||+|..++.. ....++++.++|+||||.+.+.+|...+..++..++++.|++++|||+|... +++.++.
T Consensus 127 lV~Tpe~L~~~l~~-~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~-ef~~~l~ 199 (997)
T 4a4z_A 127 LIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTY-EFANWIG 199 (997)
T ss_dssp EEEEHHHHHHHHHH-TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHH-HHHHHHH
T ss_pred EEECHHHHHHHHHh-CchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCCCCChH-HHHHHHh
Confidence 58999999999987 7778999999999999999999999999999999999999999999997654 5555554
No 40
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.30 E-value=6.4e-12 Score=116.20 Aligned_cols=73 Identities=22% Similarity=0.242 Sum_probs=63.9
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITK 75 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l 75 (189)
+|+|||++..++.. +...+++++++|+||||.+.+.++...++.++..++++.|++++|||++. ..++++++.
T Consensus 118 iv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~ 190 (720)
T 2zj8_A 118 IIATAEKFDSLLRH-GSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLN 190 (720)
T ss_dssp EEECHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTT
T ss_pred EEECHHHHHHHHHc-ChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhC
Confidence 58999999999987 66678999999999999999989999999999998878999999999975 466666553
No 41
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.30 E-value=2.6e-12 Score=103.50 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=59.1
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhh-hccccH-HHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhcccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL-LSGIFD-EQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQV 78 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~l-l~~~f~-~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~p 78 (189)
+|||||||.+++.. .+++++++|+||||.+ ++.+|. ..++.++...+ +.|++++|||++.+. +++.+...|
T Consensus 159 vv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 159 MFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp EEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred EEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHH--HHHHcCCCC
Confidence 58999999999975 3899999999999997 888887 57778877764 789999999999886 666665544
No 42
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.29 E-value=5.7e-12 Score=114.79 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=58.8
Q ss_pred CeeehHhhH------HHHhcCCCcccCceeeEEeccchhhhccc--cHHHHHH--HHhhCCCCCcEEEEeecCCchHHHH
Q psy9740 1 VIATPGRLA------DHLDTCNTFSLNRIKFLVLDEADRLLSGI--FDEQMRT--IFGAVPKQKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 1 lV~TPgrl~------~ll~~~~~~~l~~l~~lVlDEaD~ll~~~--f~~~i~~--Il~~l~~~~Q~il~SATl~~~v~~l 70 (189)
||+||++|. +++. +...++++.++|+||||.+.++| |.+++.. ++....++.|++++|||++..+.+.
T Consensus 140 lv~Tpe~L~~~~~~~~~l~--~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~ 217 (591)
T 2v1x_A 140 IYVTPEKIAKSKMFMSRLE--KAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTD 217 (591)
T ss_dssp EEECHHHHHSCHHHHHHHH--HHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHH
T ss_pred EEEChhHhhccHHHHHHHH--hhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHH
Confidence 589999874 3332 34567899999999999999988 8887765 3444445799999999999999888
Q ss_pred HHhhccc
Q psy9740 71 KSITKKQ 77 (189)
Q Consensus 71 ~~~~l~~ 77 (189)
+..++..
T Consensus 218 i~~~l~~ 224 (591)
T 2v1x_A 218 AQKILCI 224 (591)
T ss_dssp HHHHTTC
T ss_pred HHHHhCC
Confidence 8777765
No 43
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.28 E-value=1.2e-11 Score=114.00 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=62.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhC---CCCCcEEEEeecCCchHHHHHHhhc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAV---PKQKQTLLFSATMTDTLEQVKSITK 75 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l---~~~~Q~il~SATl~~~v~~l~~~~l 75 (189)
+|+|||++..++.. +...+++++++|+||||.+.+.++...++.++..+ .++.|++++|||++. ..++++++.
T Consensus 118 iv~Tpe~l~~~l~~-~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~ 193 (702)
T 2p6r_A 118 IVTTSEKADSLIRN-RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLD 193 (702)
T ss_dssp EEEEHHHHHHHHHT-TCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTT
T ss_pred EEECHHHHHHHHHc-ChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhC
Confidence 58999999999987 66679999999999999999988888888887766 578999999999985 566766553
No 44
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.25 E-value=2.4e-11 Score=112.12 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=62.1
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITK 75 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l 75 (189)
+|+|||++..++.. +...+++++++|+||||.+.+.++...++.++..++ +.|++++|||++. ..++++++-
T Consensus 125 iv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~ 196 (715)
T 2va8_A 125 IITTYEKLDSLWRH-RPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLG 196 (715)
T ss_dssp EEECHHHHHHHHHH-CCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHT
T ss_pred EEEcHHHHHHHHhC-ChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhC
Confidence 58999999999987 666799999999999999998889999999988877 8999999999975 466666553
No 45
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.20 E-value=1.8e-11 Score=109.72 Aligned_cols=69 Identities=20% Similarity=0.142 Sum_probs=51.2
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccc--cHHHHHHH---HhhCCCCCcEEEEeecCCchHHHHH
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGI--FDEQMRTI---FGAVPKQKQTLLFSATMTDTLEQVK 71 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~--f~~~i~~I---l~~l~~~~Q~il~SATl~~~v~~l~ 71 (189)
+|+||++|...... ..+...++.++|+||||.+.++| |.+.+..| ...+| +.|++++|||.+..+.+-.
T Consensus 119 lv~Tpe~l~~~~~~-~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i 192 (523)
T 1oyw_A 119 LYIAPERLMLDNFL-EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDI 192 (523)
T ss_dssp EEECHHHHTSTTHH-HHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHH
T ss_pred EEECHHHHhChHHH-HHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHH
Confidence 57999999632222 23445889999999999999987 77776654 44444 6899999999998876543
No 46
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.16 E-value=1.6e-10 Score=102.28 Aligned_cols=64 Identities=17% Similarity=0.272 Sum_probs=49.2
Q ss_pred CeeehHhhHHHHhcCCCc-ccCceeeEEeccchhhhccccHHHH-HHHHhh-C---CCCCcEEEEeecCCc
Q psy9740 1 VIATPGRLADHLDTCNTF-SLNRIKFLVLDEADRLLSGIFDEQM-RTIFGA-V---PKQKQTLLFSATMTD 65 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~-~l~~l~~lVlDEaD~ll~~~f~~~i-~~Il~~-l---~~~~Q~il~SATl~~ 65 (189)
+|||||+|.+++.. +.+ .+++++++|+||||.+.+.+....+ ...+.. + ++..|++++|||.+.
T Consensus 109 ~v~T~~~l~~~~~~-~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 178 (556)
T 4a2p_A 109 IVVTPQILVNSFED-GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGV 178 (556)
T ss_dssp EEECHHHHHHHHHS-SSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCCC
T ss_pred EEECHHHHHHHHHh-CcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcccCCCCeEEEEeCCccc
Confidence 58999999999987 666 8999999999999999988744333 333322 1 356899999999854
No 47
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.15 E-value=6.6e-11 Score=108.27 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=49.3
Q ss_pred CeeehHhhHHHHhcCCCc-ccCceeeEEeccchhhhccc-cHHHHHHHHhh-----CCCCCcEEEEeecCC
Q psy9740 1 VIATPGRLADHLDTCNTF-SLNRIKFLVLDEADRLLSGI-FDEQMRTIFGA-----VPKQKQTLLFSATMT 64 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~-~l~~l~~lVlDEaD~ll~~~-f~~~i~~Il~~-----l~~~~Q~il~SATl~ 64 (189)
+|||||+|.+++.. +.+ .+++++++|+||||.+.... |...+...+.. .++..|++++|||..
T Consensus 115 iv~Tp~~L~~~l~~-~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 115 IILTPQILVNNLKK-GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp EEECHHHHHHHHHT-TSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred EEECHHHHHHHHhc-CcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 58999999999987 666 79999999999999998554 44444333332 246789999999987
No 48
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.14 E-value=4.7e-10 Score=96.24 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=55.9
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHH
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQ 69 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~ 69 (189)
+|+||++|...+.. +.+.+.++.++|+||||.+.+......+...+....+..+++++|||.+....+
T Consensus 105 vv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~~~~~~ 172 (494)
T 1wp9_A 105 IVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEK 172 (494)
T ss_dssp EEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSCSSHHH
T ss_pred EEecHHHHHHHHhc-CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCCCCcHH
Confidence 58999999999987 778899999999999999987655555666666667789999999999754333
No 49
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.11 E-value=2.8e-10 Score=100.32 Aligned_cols=64 Identities=19% Similarity=0.303 Sum_probs=50.6
Q ss_pred CeeehHhhHHHHhcCCCc-ccCceeeEEeccchhhhccc-cHHHHHHHHhhC-----CCCCcEEEEeecCCc
Q psy9740 1 VIATPGRLADHLDTCNTF-SLNRIKFLVLDEADRLLSGI-FDEQMRTIFGAV-----PKQKQTLLFSATMTD 65 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~-~l~~l~~lVlDEaD~ll~~~-f~~~i~~Il~~l-----~~~~Q~il~SATl~~ 65 (189)
+|||||+|.+++.. +.+ .+++++++|+||||.+.+.+ +...+...+... ....|++++|||.+.
T Consensus 106 ~v~T~~~l~~~~~~-~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 106 IILTPQILVNNLNN-GAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp EEECHHHHHHHHHT-SSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCC
T ss_pred EEECHHHHHHHHhc-CcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCccc
Confidence 58999999999987 666 89999999999999999875 444444444432 246799999999854
No 50
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.11 E-value=1.8e-10 Score=107.88 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=51.4
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchh-hhccc-cHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADR-LLSGI-FDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~-ll~~~-f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+|+|||++..++.. ...+.+++++|+||||. +++.. +...+..|.... ++.|++++|||++. +.+++.+
T Consensus 189 ~v~T~G~l~r~l~~--~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~~~~ 259 (773)
T 2xau_A 189 KYMTDGMLLREAME--DHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQRYF 259 (773)
T ss_dssp EEEEHHHHHHHHHH--STTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHHHHT
T ss_pred EEECHHHHHHHHhh--CccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHHHHHh
Confidence 47999999988765 35699999999999996 77754 344555565544 57899999999964 4454433
No 51
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.06 E-value=3.5e-10 Score=113.50 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=56.0
Q ss_pred CeeehHhhHHHHhcC-CCcccCceeeEEeccchhhhccccHHHHHHH-------HhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 1 VIATPGRLADHLDTC-NTFSLNRIKFLVLDEADRLLSGIFDEQMRTI-------FGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 1 lV~TPgrl~~ll~~~-~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~I-------l~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
|||||||+..++... ..-.+++++++|+||+|.|.+. ....++.+ ...+++..|++++|||++ +.+++++
T Consensus 1024 iV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~-N~~dla~ 1101 (1724)
T 4f92_B 1024 IISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLS-NAKDVAH 1101 (1724)
T ss_dssp EEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBT-THHHHHH
T ss_pred EEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCC-CHHHHHH
Confidence 699999998887652 2335899999999999988764 44444433 345678899999999997 4678887
Q ss_pred hhccc
Q psy9740 73 ITKKQ 77 (189)
Q Consensus 73 ~~l~~ 77 (189)
++-..
T Consensus 1102 WL~~~ 1106 (1724)
T 4f92_B 1102 WLGCS 1106 (1724)
T ss_dssp HHTCC
T ss_pred HhCCC
Confidence 76544
No 52
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.06 E-value=2.7e-12 Score=117.56 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=53.2
Q ss_pred eeehHhhHHHHhcCCC--------cccCceeeEEeccchhhhccccHHHHHHHHhhCC-CCCcEEEEeecCCchHHHH
Q psy9740 2 IATPGRLADHLDTCNT--------FSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVP-KQKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 2 V~TPgrl~~ll~~~~~--------~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~~l 70 (189)
++|||++++++.. +. ..+++++++|+||||.| +.+|...+..|+..++ +++|+++||||++..+.++
T Consensus 250 ~~tp~~~i~~~t~-~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~ 325 (618)
T 2whx_A 250 DHTGREIVDLMCH-ATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPF 325 (618)
T ss_dssp CCCSSSCEEEEEH-HHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSS
T ss_pred ccCCCceEEEECh-HHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhh
Confidence 5677776554433 22 34899999999999998 8889999999998886 6899999999998876543
No 53
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.02 E-value=1.9e-10 Score=106.08 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=53.5
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCc--EEEEeecCCch
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQ--TLLFSATMTDT 66 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q--~il~SATl~~~ 66 (189)
+|+|||||+ .. +.+.+++++++|+||| +|++.+|...+..|++.++..+| ++++|||++..
T Consensus 301 lV~TPGrLl---~~-~~l~l~~l~~lVlDEA-H~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 301 TYSTYGKFL---AD-GGCSGGAYDIIICDEC-HSTDSTTILGIGTVLDQAETAGARLVVLATATPPGS 363 (666)
T ss_dssp EEEEHHHHH---HT-TSCCTTSCSEEEETTT-TCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC
T ss_pred EEECcHHHH---hC-CCcccCcccEEEEccc-hhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcc
Confidence 589999983 44 7788999999999999 78899999999999999998777 56779999884
No 54
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.02 E-value=1.2e-09 Score=102.06 Aligned_cols=63 Identities=19% Similarity=0.348 Sum_probs=49.8
Q ss_pred CeeehHhhHHHHhcCCCc-ccCceeeEEeccchhhhccc-cHHHHHHHHhhC----CCCCcEEEEeecCC
Q psy9740 1 VIATPGRLADHLDTCNTF-SLNRIKFLVLDEADRLLSGI-FDEQMRTIFGAV----PKQKQTLLFSATMT 64 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~-~l~~l~~lVlDEaD~ll~~~-f~~~i~~Il~~l----~~~~Q~il~SATl~ 64 (189)
+|||||+|.+++.. +.+ .+++++++|+||||.+.+.+ +...+..++... .+..|++++|||.+
T Consensus 350 vv~Tp~~l~~~l~~-~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 350 IVVTPQILVNSFED-GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp EEECHHHHHHHHHS-SSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCC
T ss_pred EEEchHHHHHHHHh-ccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEEEcCCcc
Confidence 58999999999987 666 89999999999999999775 333343444331 45689999999985
No 55
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.01 E-value=5e-12 Score=111.12 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=49.8
Q ss_pred eeehHhhHHHHhcCCCc--------ccCceeeEEeccchhhhccccHHHHHHHHhhC-CCCCcEEEEeecCCchHHHH
Q psy9740 2 IATPGRLADHLDTCNTF--------SLNRIKFLVLDEADRLLSGIFDEQMRTIFGAV-PKQKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 2 V~TPgrl~~ll~~~~~~--------~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l-~~~~Q~il~SATl~~~v~~l 70 (189)
|+|||++++++.. +.+ .+++++++|+||||.| +.+|...+..+...+ ++++|++++|||+++.+..+
T Consensus 72 v~Tp~~l~~~l~~-~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~ 147 (440)
T 1yks_A 72 HGSGREVIDAMCH-ATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEF 147 (440)
T ss_dssp CCCSSCCEEEEEH-HHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS
T ss_pred ccCCccceeeecc-cchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhh
Confidence 7899998876654 333 3899999999999999 555555555554444 36899999999998875533
No 56
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.00 E-value=1.6e-09 Score=108.73 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=53.8
Q ss_pred CeeehHhhHHHHhcCCC--cccCceeeEEeccchhhhccccHHHHHHHH-------hhCCCCCcEEEEeecCCchHHHHH
Q psy9740 1 VIATPGRLADHLDTCNT--FSLNRIKFLVLDEADRLLSGIFDEQMRTIF-------GAVPKQKQTLLFSATMTDTLEQVK 71 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~--~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il-------~~l~~~~Q~il~SATl~~~v~~l~ 71 (189)
||+||+++-.++.. .. -.++++++||+||+|.+-+ +....++.++ ..+++..|++++|||+| ++++++
T Consensus 185 lVtTpEkld~llr~-~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~-N~~dvA 261 (1724)
T 4f92_B 185 IVCTPEKWDIITRK-GGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLP-NYEDVA 261 (1724)
T ss_dssp EEECHHHHHHHTTS-STTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCT-THHHHH
T ss_pred EEECHHHHHHHHcC-CccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccC-CHHHHH
Confidence 69999998766654 22 2489999999999996544 4544444443 34577899999999997 477888
Q ss_pred Hhhccc
Q psy9740 72 SITKKQ 77 (189)
Q Consensus 72 ~~~l~~ 77 (189)
+++-.+
T Consensus 262 ~wL~~~ 267 (1724)
T 4f92_B 262 TFLRVD 267 (1724)
T ss_dssp HHTTCC
T ss_pred HHhCCC
Confidence 766543
No 57
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.91 E-value=5.8e-09 Score=99.41 Aligned_cols=63 Identities=19% Similarity=0.348 Sum_probs=49.9
Q ss_pred CeeehHhhHHHHhcCCCc-ccCceeeEEeccchhhhccc-cHHHHHHHHhhC----CCCCcEEEEeecCC
Q psy9740 1 VIATPGRLADHLDTCNTF-SLNRIKFLVLDEADRLLSGI-FDEQMRTIFGAV----PKQKQTLLFSATMT 64 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~-~l~~l~~lVlDEaD~ll~~~-f~~~i~~Il~~l----~~~~Q~il~SATl~ 64 (189)
+|+|||+|.+++.. +.+ .+++++++|+||||.+...+ +...+..++... .+..|++++|||.+
T Consensus 350 vI~Tp~~L~~~l~~-~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 350 IVVTPQILVNSFED-GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp EEECHHHHHHHHHS-SSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCC
T ss_pred EEecHHHHHHHHHc-CccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCcCeEEEecCCcc
Confidence 58999999999987 666 89999999999999998775 444444444332 45689999999985
No 58
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.84 E-value=1.4e-09 Score=99.45 Aligned_cols=65 Identities=18% Similarity=0.199 Sum_probs=47.6
Q ss_pred CeeehHhhHHHHhc-----CCCcccCceeeEEeccchhhhccc-cHHHHHHHHhhC-------------CCCCcEEEEee
Q psy9740 1 VIATPGRLADHLDT-----CNTFSLNRIKFLVLDEADRLLSGI-FDEQMRTIFGAV-------------PKQKQTLLFSA 61 (189)
Q Consensus 1 lV~TPgrl~~ll~~-----~~~~~l~~l~~lVlDEaD~ll~~~-f~~~i~~Il~~l-------------~~~~Q~il~SA 61 (189)
||+||++|.+++.. .+.+.+.+++++|+||||.+...+ |...+...+... .+..|++++||
T Consensus 110 lv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTA 189 (699)
T 4gl2_A 110 IISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTA 189 (699)
T ss_dssp EEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECS
T ss_pred EEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecc
Confidence 58999999998842 156789999999999999997654 444444333221 15679999999
Q ss_pred cCCc
Q psy9740 62 TMTD 65 (189)
Q Consensus 62 Tl~~ 65 (189)
|.+.
T Consensus 190 Tp~~ 193 (699)
T 4gl2_A 190 SPGV 193 (699)
T ss_dssp CCCC
T ss_pred cccc
Confidence 9986
No 59
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.78 E-value=8.4e-11 Score=108.66 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=47.5
Q ss_pred eeehHhhHHHHhcCCC--------cccCceeeEEeccchhhhccccHHHHHHHHhhCC-CCCcEEEEeecCCchHH
Q psy9740 2 IATPGRLADHLDTCNT--------FSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVP-KQKQTLLFSATMTDTLE 68 (189)
Q Consensus 2 V~TPgrl~~ll~~~~~--------~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~ 68 (189)
++||+++++++.. +. ..+++++++|+||||.| +.++...+..+...++ +.+|++++|||++..+.
T Consensus 305 v~tp~~ll~~l~~-~~l~~~l~~~~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~ 378 (673)
T 2wv9_A 305 EHSGNEIVDVMCH-ATLTHRLMSPLRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSD 378 (673)
T ss_dssp CCCSCCCEEEEEH-HHHHHHHHSSSCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred cCCHHHHHHHHHh-hhhHHHHhcccccccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhh
Confidence 6788888765554 32 36899999999999998 4334445555554443 68999999999987754
No 60
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.78 E-value=1.6e-08 Score=98.36 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=53.0
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhccc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKKQ 77 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~~ 77 (189)
+||||+.+. +.+.++++.++|+||||++ ......+++.++.+.|++++|||.++....++...+.+
T Consensus 710 vV~T~~ll~------~~~~~~~l~lvIiDEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~ 775 (1151)
T 2eyq_A 710 LIGTHKLLQ------SDVKFKDLGLLIVDEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 775 (1151)
T ss_dssp EEECTHHHH------SCCCCSSEEEEEEESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSE
T ss_pred EEECHHHHh------CCccccccceEEEechHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCC
Confidence 589997653 4577999999999999994 33456667777788999999999988888777777666
No 61
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.71 E-value=3.7e-09 Score=92.95 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=48.8
Q ss_pred eeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhh-CCCCCcEEEEeecCCchHH
Q psy9740 2 IATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGA-VPKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 2 V~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~-l~~~~Q~il~SATl~~~v~ 68 (189)
++|||.+.+.+.. ...+++++++|+||||.+ +.++...+..+... .+++.|++++|||+|..+.
T Consensus 92 ~~t~~~l~~~l~~--~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~ 156 (451)
T 2jlq_A 92 LMCHATFTTRLLS--STRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTD 156 (451)
T ss_dssp EEEHHHHHHHHHH--CSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred EEChHHHHHHhhC--cccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCccch
Confidence 6899999988865 366899999999999977 55555555444433 3568999999999987653
No 62
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.67 E-value=3.4e-08 Score=89.06 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=39.5
Q ss_pred CeeehHhhHHHHhcC---CCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 1 VIATPGRLADHLDTC---NTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 1 lV~TPgrl~~ll~~~---~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
+|+||++|..+.... +.+....+.++|+||||++...+ ...+..+++.++ ..+++++|||.....
T Consensus 278 ~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~-~~~~l~lTATP~~~~ 345 (590)
T 3h1t_A 278 YFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFE-PAFQIGMTATPLRED 345 (590)
T ss_dssp EEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHST-TSEEEEEESSCSCTT
T ss_pred EEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCC-cceEEEecccccccc
Confidence 589999999876531 34567789999999999997653 245567777776 478999999976543
No 63
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.64 E-value=2.3e-08 Score=77.80 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=40.5
Q ss_pred CeeehHhhHHHHhcCCC-----cccCceeeEEeccchhhhccccHHHH-HHHHhhC-------------CCCCcEEEEee
Q psy9740 1 VIATPGRLADHLDTCNT-----FSLNRIKFLVLDEADRLLSGIFDEQM-RTIFGAV-------------PKQKQTLLFSA 61 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~-----~~l~~l~~lVlDEaD~ll~~~f~~~i-~~Il~~l-------------~~~~Q~il~SA 61 (189)
+|+||++|..++..... +.+.++.++|+||||.+++.++...+ ..++... ....+++++||
T Consensus 136 ~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSA 215 (216)
T 3b6e_A 136 IISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTA 215 (216)
T ss_dssp EEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEEC
T ss_pred EEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeec
Confidence 58999999999887322 67899999999999999988766654 3333221 15789999999
Q ss_pred c
Q psy9740 62 T 62 (189)
Q Consensus 62 T 62 (189)
|
T Consensus 216 T 216 (216)
T 3b6e_A 216 S 216 (216)
T ss_dssp C
T ss_pred C
Confidence 8
No 64
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.61 E-value=1.4e-08 Score=88.83 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=43.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCC
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMT 64 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~ 64 (189)
+||||+++...+.. ..+++.++|+||||.+.+.+|.. +++.+ +..+++++|||.+
T Consensus 175 vv~T~~~l~~~~~~----~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lSATp~ 229 (472)
T 2fwr_A 175 TVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLTATFE 229 (472)
T ss_dssp EEEEHHHHHHTHHH----HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEESCCC
T ss_pred EEEEcHHHHHHHHH----hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEecCcc
Confidence 58999999877653 12458999999999999888865 45555 4678999999987
No 65
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.56 E-value=1.1e-08 Score=90.07 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=41.9
Q ss_pred eehHhhHHHHhcCCCcccCceeeEEeccchh-----hhccccHHHHHHHHhhCCCCCcEEEEeecCCchHH
Q psy9740 3 ATPGRLADHLDTCNTFSLNRIKFLVLDEADR-----LLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 3 ~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~-----ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~ 68 (189)
+|.|.+...+.. ...+++++++|+||||. ++..+|...+.. ++..|++++|||+|.++.
T Consensus 95 ~~~~~l~~~l~~--~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-----~~~~~~il~SAT~~~~~~ 158 (459)
T 2z83_A 95 MCHATLTHRLMS--PNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-----LGEAAAIFMTATPPGTTD 158 (459)
T ss_dssp EEHHHHHHHHHS--CC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-----TTSCEEEEECSSCTTCCC
T ss_pred EchHHHHHHhhc--cccccCCcEEEEECCccCCchhhHHHHHHHHHhc-----cCCccEEEEEcCCCcchh
Confidence 445555544432 35689999999999999 666666555432 368999999999997654
No 66
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.46 E-value=3.4e-08 Score=86.33 Aligned_cols=62 Identities=18% Similarity=0.110 Sum_probs=44.0
Q ss_pred ehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhC-CCCCcEEEEeecCCchHH
Q psy9740 4 TPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAV-PKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 4 TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l-~~~~Q~il~SATl~~~v~ 68 (189)
|.|.+...+.. ...+++++++|+||||.+ +.++......+.... +.++|++++|||++..+.
T Consensus 77 ~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~ 139 (431)
T 2v6i_A 77 CHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTE 139 (431)
T ss_dssp EHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCC
T ss_pred chHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchh
Confidence 44555444432 345899999999999997 555566655555543 568999999999997543
No 67
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.40 E-value=5.8e-07 Score=82.77 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=38.0
Q ss_pred eehHhhHHHHhcCCCcccCceeeEEeccchhhhcc--ccHHHHH----HHHhh------------------CCCCCcEEE
Q psy9740 3 ATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSG--IFDEQMR----TIFGA------------------VPKQKQTLL 58 (189)
Q Consensus 3 ~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~--~f~~~i~----~Il~~------------------l~~~~Q~il 58 (189)
||||+|++++.. . .++|+||+|+|++. ++...+. .++.. .++.+|+++
T Consensus 320 ~tpg~LlDyl~~-~-------~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~ 391 (661)
T 2d7d_A 320 STPYTLLDYFPD-D-------FMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVY 391 (661)
T ss_dssp CCCBCGGGGSCS-S-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEE
T ss_pred CCccHHHHHccc-C-------cEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEE
Confidence 689999998864 2 28999999999843 2222221 12111 124789999
Q ss_pred EeecCCchH
Q psy9740 59 FSATMTDTL 67 (189)
Q Consensus 59 ~SATl~~~v 67 (189)
||||.+...
T Consensus 392 ~SAT~~~~~ 400 (661)
T 2d7d_A 392 VSATPGPYE 400 (661)
T ss_dssp ECSSCCHHH
T ss_pred EecCCChhH
Confidence 999997654
No 68
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.35 E-value=2.3e-07 Score=76.09 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=49.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHH
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQ 69 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~ 69 (189)
+|+||+++... ....+++++++|+||||.|.. +.+..++..+++.+|++++|||.+.....
T Consensus 208 ~v~T~~~l~~~----~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~~~ 268 (282)
T 1rif_A 208 VVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDGKAN 268 (282)
T ss_dssp EEECHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECSSCCTTSTT
T ss_pred EEEchHHHHhh----HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeCCCCCcchH
Confidence 58999987542 334678999999999999974 47788889888899999999999866433
No 69
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.35 E-value=3.6e-07 Score=80.57 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=49.2
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHH
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~ 68 (189)
+||||+++.. . ....++++.++|+||||.+.. +....+++.+++..+++++|||.+....
T Consensus 208 ~i~T~~~l~~---~-~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~~ 267 (510)
T 2oca_A 208 VVGTWQTVVK---Q-PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDGKA 267 (510)
T ss_dssp EEEEHHHHTT---S-CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEESCGGGCSS
T ss_pred EEEeHHHHhh---c-hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEeCCCCCcc
Confidence 5899997653 2 446788999999999999976 5677888899889999999999976643
No 70
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.23 E-value=1.2e-06 Score=82.28 Aligned_cols=59 Identities=22% Similarity=0.290 Sum_probs=40.7
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHH
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQV 70 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l 70 (189)
+||||+++.+ .+.++++.++|+||||++. +.. ...+......+|++++|||..+....+
T Consensus 475 vVgT~~ll~~------~~~~~~l~lVVIDEaHr~g---~~q--r~~l~~~~~~~~vL~mSATp~p~tl~~ 533 (780)
T 1gm5_A 475 VIGTHALIQE------DVHFKNLGLVIIDEQHRFG---VKQ--REALMNKGKMVDTLVMSATPIPRSMAL 533 (780)
T ss_dssp EEECTTHHHH------CCCCSCCCEEEEESCCCC----------CCCCSSSSCCCEEEEESSCCCHHHHH
T ss_pred EEECHHHHhh------hhhccCCceEEecccchhh---HHH--HHHHHHhCCCCCEEEEeCCCCHHHHHH
Confidence 5899998754 4668999999999999963 211 122233345789999999987665443
No 71
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.18 E-value=5.8e-07 Score=82.78 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=37.0
Q ss_pred eehHhhHHHHhcCCCcccCceeeEEeccchhhhcc--ccHHHH----HHHHhh------------------CCCCCcEEE
Q psy9740 3 ATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSG--IFDEQM----RTIFGA------------------VPKQKQTLL 58 (189)
Q Consensus 3 ~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~--~f~~~i----~~Il~~------------------l~~~~Q~il 58 (189)
+|||+|++++.. . .++|+||+|+|++. ++.... ..+... .++..|+++
T Consensus 314 ~tp~~LlDyl~~-~-------~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~ 385 (664)
T 1c4o_A 314 EPPYTLLDYFPE-D-------FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVF 385 (664)
T ss_dssp SCCCCGGGGSCT-T-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEE
T ss_pred CCchHHHHHHhh-c-------cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEE
Confidence 689999988854 2 28999999999853 122221 111111 124689999
Q ss_pred EeecCCchH
Q psy9740 59 FSATMTDTL 67 (189)
Q Consensus 59 ~SATl~~~v 67 (189)
+|||.+...
T Consensus 386 ~SAT~~~~~ 394 (664)
T 1c4o_A 386 VSATPGPFE 394 (664)
T ss_dssp EESSCCHHH
T ss_pred EecCCCHHH
Confidence 999997653
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.16 E-value=4.9e-06 Score=80.19 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=46.9
Q ss_pred CeeehHhhHHHHhcCCC-cccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCc
Q psy9740 1 VIATPGRLADHLDTCNT-FSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTD 65 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~-~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~ 65 (189)
+|+||++|..++..... ..++...++|+||||++...+ ....|.+.+| +.++++||||...
T Consensus 379 iVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~---~~~~I~~~~p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 379 IVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGE---AQKNLKKKFK-RYYQFGFTGTPIF 440 (1038)
T ss_dssp EEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHH---HHHHHHHHCS-SEEEEEEESSCCC
T ss_pred EEEEHHHHHHHHhcccchhccccccEEEEEccchhcchH---HHHHHHHhCC-cccEEEEeCCccc
Confidence 58999999998875222 256778899999999987543 3456667776 4799999999764
No 73
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=97.90 E-value=2.3e-06 Score=79.15 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=56.6
Q ss_pred CeeehHhhHHHHhcCC-Ccc-cCceeeEEeccchhhhccccHHHHHHHHhhCC-CCCcEEEEeecCCchHHHHHHh
Q psy9740 1 VIATPGRLADHLDTCN-TFS-LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVP-KQKQTLLFSATMTDTLEQVKSI 73 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~-~~~-l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~-~~~Q~il~SATl~~~v~~l~~~ 73 (189)
+++||||+.+++..+. .+. .+.++++|+||||.|++.+|...+..++..++ +..|++++|||. +.+..++..
T Consensus 216 iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~ 290 (677)
T 3rc3_A 216 TVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYT 290 (677)
T ss_dssp CCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHH
T ss_pred EecCCCcccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHHHh
Confidence 4689999888775521 222 46789999999999999999999999999888 788999999995 335555543
No 74
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.61 E-value=4.4e-05 Score=61.25 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=41.7
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCc
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTD 65 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~ 65 (189)
+|+||+++...... ..+...++|+||||.+.+..|.. ++..++ ..+++++|||.+.
T Consensus 175 ~v~T~~~l~~~~~~----~~~~~~llIiDEaH~l~~~~~~~----i~~~~~-~~~~l~LSATp~r 230 (237)
T 2fz4_A 175 TVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APFRLGLTATFER 230 (237)
T ss_dssp EEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTHHH----HHHTCC-CSEEEEEEESCC-
T ss_pred EEEeHHHHHhhHHH----hcccCCEEEEECCccCCChHHHH----HHHhcc-CCEEEEEecCCCC
Confidence 48999998876543 12458999999999998876653 555554 6788999999864
No 75
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=97.59 E-value=0.0002 Score=62.67 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=39.5
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCC
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMT 64 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~ 64 (189)
+|+||+++..... +......++|+||||.+-+.+ ....+.+..++ ....+++|||-.
T Consensus 132 vi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~~~l~LTaTP~ 188 (500)
T 1z63_A 132 ILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYRIALTGTPI 188 (500)
T ss_dssp EEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEEEEECSSCS
T ss_pred EEeeHHHHhccch----hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cCcEEEEecCCC
Confidence 5789998865432 334567899999999997654 23445555554 456799999963
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.08 E-value=0.00023 Score=67.55 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=30.1
Q ss_pred CeeehHhh-HHHHhcCC-----CcccC---ceeeEEeccchhhh
Q psy9740 1 VIATPGRL-ADHLDTCN-----TFSLN---RIKFLVLDEADRLL 35 (189)
Q Consensus 1 lV~TPgrl-~~ll~~~~-----~~~l~---~l~~lVlDEaD~ll 35 (189)
+|||||+| .+++..+- .+.++ ++.++|+||||.||
T Consensus 172 vyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 172 TYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp EEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred EEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 58999999 89998731 35788 99999999999998
No 77
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.02 E-value=0.00032 Score=54.43 Aligned_cols=50 Identities=16% Similarity=0.047 Sum_probs=32.5
Q ss_pred eeEeecCccccchhhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 134 VFVWESKQDVATVEELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 134 ~~~~~~~~~~~~~~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
+..+.++.....+.+|.|+|+.+++..|...|.++|... .+++||||+|+
T Consensus 15 p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-----~~~~lVF~~~~ 64 (191)
T 2p6n_A 15 TENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-----PPPVLIFAEKK 64 (191)
T ss_dssp -------------CCSEEEEEECCGGGHHHHHHHHHTTS-----CSCEEEECSCH
T ss_pred CEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC-----CCCEEEEECCH
Confidence 334445555667789999999999999999999988652 46899999986
No 78
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=96.93 E-value=0.0011 Score=63.46 Aligned_cols=63 Identities=19% Similarity=0.138 Sum_probs=38.3
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccH-HHHHHHHhhC-CCCCcEEEEeecC
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFD-EQMRTIFGAV-PKQKQTLLFSATM 63 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~-~~i~~Il~~l-~~~~Q~il~SATl 63 (189)
+|+|++.+.........+...+..++|+||||.+-..+.. ......+..+ .+.+.++++|||-
T Consensus 252 vI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATP 316 (968)
T 3dmq_A 252 VICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATP 316 (968)
T ss_dssp EEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSC
T ss_pred EEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCC
Confidence 4788887754221112244567889999999999754421 1112223222 3456789999995
No 79
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0072 Score=56.48 Aligned_cols=57 Identities=16% Similarity=0.272 Sum_probs=36.8
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecC
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl 63 (189)
+|+|++.+...... +.--...++|+||||++-.. .......+..++ ....+++|||-
T Consensus 349 vitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~--~s~~~~~l~~l~-~~~rl~LTgTP 405 (800)
T 3mwy_W 349 LLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNA--ESSLYESLNSFK-VANRMLITGTP 405 (800)
T ss_dssp EEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCS--SSHHHHHHTTSE-EEEEEEECSCC
T ss_pred EEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCc--hhHHHHHHHHhh-hccEEEeeCCc
Confidence 47788887654332 33345789999999999543 234445555553 34458899995
No 80
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=93.96 E-value=0.027 Score=50.31 Aligned_cols=35 Identities=20% Similarity=0.099 Sum_probs=27.7
Q ss_pred CeeehHhhHHHHhcCCCccc-CceeeEEeccchhhhc
Q psy9740 1 VIATPGRLADHLDTCNTFSL-NRIKFLVLDEADRLLS 36 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l-~~l~~lVlDEaD~ll~ 36 (189)
||+|+++|++.... ..+.+ ....++|+||||.|.+
T Consensus 152 VV~~~~~l~~~~~~-~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 152 IALTYPYFFIDRYR-EFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEEETHHHHCHHHH-TTSCCCSTTEEEEETTGGGGGG
T ss_pred EEeCchHhcCHHHH-HhcCCCcCCeEEEEecccchHH
Confidence 68999999988655 33433 4678899999999998
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=93.55 E-value=0.069 Score=49.95 Aligned_cols=35 Identities=14% Similarity=0.058 Sum_probs=26.9
Q ss_pred eEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 152 YYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 152 ~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
-.++.....|...+.+.+.... ...+++||||+|+
T Consensus 450 d~vy~t~~eK~~al~~~I~~~~--~~gqpVLVFt~S~ 484 (822)
T 3jux_A 450 DLVFRTQKEKYEKIVEEIEKRY--KKGQPVLVGTTSI 484 (822)
T ss_dssp CEEESSHHHHHHHHHHHHHHHH--HHTCCEEEEESSH
T ss_pred cEEEecHHHHHHHHHHHHHHHh--hCCCCEEEEECCH
Confidence 4566777889999999887643 1257999999996
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.18 E-value=0.086 Score=47.78 Aligned_cols=37 Identities=22% Similarity=0.488 Sum_probs=32.3
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
+.+++|+|||+ |++ .+.+..|+..++...|++++.-.
T Consensus 262 ~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 262 HLDVLVVDEAS-MID---LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp SCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEEEEEECT
T ss_pred CCCEEEEechh-hCC---HHHHHHHHHhCCCCCEEEEEcch
Confidence 67899999999 776 56789999999999999998755
No 83
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=91.38 E-value=0.23 Score=45.08 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=36.9
Q ss_pred CeeehHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecC
Q psy9740 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl 63 (189)
+|+|++.+..... .+.-....++|+||||++-..+ ......+..++ ....+++|||-
T Consensus 174 vi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn~~--~~~~~al~~l~-~~~rl~LTgTP 230 (644)
T 1z3i_X 174 LIISYETFRLHAE---VLHKGKVGLVICDEGHRLKNSD--NQTYLALNSMN-AQRRVLISGTP 230 (644)
T ss_dssp EEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCTTC--HHHHHHHHHHC-CSEEEEECSSC
T ss_pred EEeeHHHHHhhHH---HhhcCCccEEEEECceecCChh--hHHHHHHHhcc-cCcEEEEecCc
Confidence 4778888775442 3444567899999999996543 22333333443 44568999995
No 84
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=87.34 E-value=0.16 Score=45.17 Aligned_cols=35 Identities=26% Similarity=0.171 Sum_probs=25.6
Q ss_pred CeeehHhhHHHHhcCCCc-------ccCceeeEEeccchhhhc
Q psy9740 1 VIATPGRLADHLDTCNTF-------SLNRIKFLVLDEADRLLS 36 (189)
Q Consensus 1 lV~TPgrl~~ll~~~~~~-------~l~~l~~lVlDEaD~ll~ 36 (189)
||+|++.|++.... +.+ .+.....+|+||||.|.+
T Consensus 148 VV~n~~~l~~~~~~-~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 148 IAMTYPYLFQKPIR-NSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp EEEETHHHHSHHHH-HHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred EEEChHHhcCHHHH-HhhCcccccccCcCCCEEEEEccccHHH
Confidence 58999999875543 222 245678999999999943
No 85
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.27 E-value=1.2 Score=36.40 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=30.8
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecC
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl 63 (189)
..+-+.+++||+|. ++....+.+.++++..+++..+++.|-..
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34677999999999 77777788888888877666555555433
No 86
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=80.37 E-value=1.2 Score=33.77 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=33.7
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
++..++++||.+.-||......+..++..+.+..|+++.|
T Consensus 85 ~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivit 124 (173)
T 3kta_B 85 KPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVIT 124 (173)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEE
Confidence 4457999999999999988888888888877778877775
No 87
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=79.02 E-value=1.8 Score=33.01 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=30.7
Q ss_pred cCceeeEEeccchhh--hccccHHHHHHHHhhCCCCCcEEEEeecCCc
Q psy9740 20 LNRIKFLVLDEADRL--LSGIFDEQMRTIFGAVPKQKQTLLFSATMTD 65 (189)
Q Consensus 20 l~~l~~lVlDEaD~l--l~~~f~~~i~~Il~~l~~~~Q~il~SATl~~ 65 (189)
..+...+++||++.| ++..|.+.++.+++.- .-+++-++|.+.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~vsh 147 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPVPK 147 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeecCC
Confidence 566789999999999 5666888888887732 224545777754
No 88
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=77.89 E-value=1.9 Score=38.00 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=28.0
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
+.++++|+|||++| |..+...+-.+++.+ +.|.++..
T Consensus 413 ~~~rlvvlDEA~km-D~~~~~~~~~l~~~l--glQliiat 449 (483)
T 3euj_A 413 LPCRLLFLDQAARL-DAMSINTLFELCERL--DMQLLIAA 449 (483)
T ss_dssp CCCCEEEESSGGGS-CHHHHHHHHHHHHHT--TCEEEEEE
T ss_pred CceeEEEEeccccC-CHHHHHHHHHHHHHc--CCEEEEEC
Confidence 58999999999666 665666677777765 78888653
No 89
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=73.28 E-value=1.2 Score=32.52 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=28.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEeecC-CchH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFSATM-TDTL 67 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~SATl-~~~v 67 (189)
+.+.+.+|+||.+.+.... .+.+..+++.+.. ....+++++.. |.+.
T Consensus 81 ~~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~~p~~l 129 (149)
T 2kjq_A 81 AFEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEYTPQQL 129 (149)
T ss_dssp GGGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESSCTTTS
T ss_pred HhCCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCCCHHHc
Confidence 3467899999999865443 6667677665543 34424444554 4433
No 90
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=67.14 E-value=6.3 Score=30.97 Aligned_cols=46 Identities=20% Similarity=0.449 Sum_probs=26.6
Q ss_pred CceeeEEeccchhhhcc-----ccH----HHHHHHHhhCC-CCCcEEEEeecCCch
Q psy9740 21 NRIKFLVLDEADRLLSG-----IFD----EQMRTIFGAVP-KQKQTLLFSATMTDT 66 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~-----~f~----~~i~~Il~~l~-~~~Q~il~SATl~~~ 66 (189)
..-..++|||+|.|+.. .+. +.+..+++... ...+++++.+|-.++
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 178 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh
Confidence 44679999999999632 122 33333333322 355666777775544
No 91
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=66.84 E-value=4.1 Score=30.53 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=25.4
Q ss_pred CccccchhhcceeEEEecCcchHHHHHHHHHHH
Q psy9740 140 KQDVATVEELDQYYVLCPYDVKDGYLVETVRLY 172 (189)
Q Consensus 140 ~~~~~~~~~l~q~~~~~~~~~K~~~L~~lL~~~ 172 (189)
......+++|.|+|+.+++..|...|.++|+..
T Consensus 11 ~~~~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~ 43 (185)
T 2jgn_A 11 YFQGSTSENITQKVVWVEESDKRSFLLDLLNAT 43 (185)
T ss_dssp -----CCTTEEEEEEECCGGGHHHHHHHHHHHC
T ss_pred cccCCCCCCceEEEEEeCcHHHHHHHHHHHHhc
Confidence 344556789999999999999999999999875
No 92
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=65.49 E-value=13 Score=27.19 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=26.0
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
..-..+++||+|.+... ..+.+..++...+.+..+++.+
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 55678999999998543 4555666666655555555544
No 93
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=64.51 E-value=6.8 Score=30.79 Aligned_cols=40 Identities=13% Similarity=0.263 Sum_probs=23.5
Q ss_pred eeeEEeccchhhhc----------cccHHHHHHHHhhC---CCCCcEEEEeec
Q psy9740 23 IKFLVLDEADRLLS----------GIFDEQMRTIFGAV---PKQKQTLLFSAT 62 (189)
Q Consensus 23 l~~lVlDEaD~ll~----------~~f~~~i~~Il~~l---~~~~Q~il~SAT 62 (189)
...++|||+|.+.. ......+..++..+ .....++++.+|
T Consensus 111 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt 163 (285)
T 3h4m_A 111 PSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGAT 163 (285)
T ss_dssp SEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEEC
T ss_pred CeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence 35899999999963 22345555555543 333344444444
No 94
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=63.31 E-value=27 Score=24.70 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=45.6
Q ss_pred hHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy9740 120 HIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDT 187 (189)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns 187 (189)
...++|...+.-..++++.-... .-.+.|...-+.++......-++.+|+....-.+.+..-+|||.
T Consensus 18 ~e~~~ir~kyP~riPVIvE~~~~-~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~ 84 (118)
T 3rui_B 18 AESERIADRFKNRIPVICEKAEK-SDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVND 84 (118)
T ss_dssp HHHHHHHHHCSSEEEEEEEECTT-CCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTT
T ss_pred HHHHHHHHhCCCceEEEEEeCCC-CCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECC
Confidence 34455566665555666554332 23456777667788888998999999887655667788889875
No 95
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=63.07 E-value=4.7 Score=32.53 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=27.3
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
+.-+.+++||+|.|-.....+.+..+++..+.+.++++.+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 4678999999999962335556666666655566666543
No 96
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=62.35 E-value=7.3 Score=28.88 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=22.1
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
.-..+|+||+|.+- ....+.+..++...+....+++.+
T Consensus 126 ~~~vlviDe~~~l~-~~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 126 RFKVYLIDEVHMLS-RHSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSEEEEEETGGGSC-HHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred CceEEEEECccccc-HHHHHHHHHHHhcCCCceEEEEEe
Confidence 34689999999973 334444555555444444444443
No 97
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=62.24 E-value=10 Score=29.26 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=42.7
Q ss_pred CceeeEEeccchhhhcccc--HHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 21 NRIKFLVLDEADRLLSGIF--DEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f--~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
...++|||||.--.+..++ .+++-.++..-|...-+++++--.|+++.++|+..
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~V 174 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTV 174 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEE
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcce
Confidence 5678999999988877763 45566777777778888888888899999887654
No 98
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=60.26 E-value=5.4 Score=32.02 Aligned_cols=31 Identities=19% Similarity=0.035 Sum_probs=24.4
Q ss_pred ecCcchHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy9740 156 CPYDVKDGYLVETVRLYREKSPRGAIVIFTDTC 188 (189)
Q Consensus 156 ~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns~ 188 (189)
.....|...|.++|+... ....++||||+++
T Consensus 92 ~~~s~K~~~L~~ll~~~~--~~~~kvlIFs~~~ 122 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEAL--DEGDKIAIFTQFV 122 (271)
T ss_dssp STTCHHHHHHHHHHHHHH--HTTCCEEEEESCH
T ss_pred cccCHHHHHHHHHHHHHH--hCCCeEEEEeccH
Confidence 345679999999998874 2468999999874
No 99
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=59.91 E-value=3.8 Score=29.45 Aligned_cols=13 Identities=15% Similarity=0.347 Sum_probs=11.4
Q ss_pred eeeEEeccchhhh
Q psy9740 23 IKFLVLDEADRLL 35 (189)
Q Consensus 23 l~~lVlDEaD~ll 35 (189)
-..+++||+|.+.
T Consensus 116 ~~vl~iDe~~~l~ 128 (187)
T 2p65_A 116 QVVMFIDEIHTVV 128 (187)
T ss_dssp SEEEEETTGGGGS
T ss_pred ceEEEEeCHHHhc
Confidence 3689999999997
No 100
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=59.64 E-value=3.3 Score=30.38 Aligned_cols=47 Identities=21% Similarity=0.129 Sum_probs=29.1
Q ss_pred cCceeeEEeccchhh-hccccHHHHHHHHhhCC-CCCcEEEEeecCCch
Q psy9740 20 LNRIKFLVLDEADRL-LSGIFDEQMRTIFGAVP-KQKQTLLFSATMTDT 66 (189)
Q Consensus 20 l~~l~~lVlDEaD~l-l~~~f~~~i~~Il~~l~-~~~Q~il~SATl~~~ 66 (189)
+.+...+|+||.+.. ++......+..++.... .+..+++.|-..+.+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 456789999999953 44445566777776654 344455544444444
No 101
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=59.33 E-value=8.2 Score=30.66 Aligned_cols=12 Identities=42% Similarity=0.445 Sum_probs=10.9
Q ss_pred eeEEeccchhhh
Q psy9740 24 KFLVLDEADRLL 35 (189)
Q Consensus 24 ~~lVlDEaD~ll 35 (189)
..++|||+|.|.
T Consensus 132 ~vl~iDEid~l~ 143 (309)
T 3syl_A 132 GVLFIDEAYYLY 143 (309)
T ss_dssp SEEEEETGGGSC
T ss_pred CEEEEEChhhhc
Confidence 589999999997
No 102
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=57.99 E-value=9.6 Score=31.75 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=33.3
Q ss_pred Cc-eeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 21 NR-IKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 21 ~~-l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
.+ ...+++||.+.=||......+..++..+....|+++.|
T Consensus 303 ~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~t 343 (371)
T 3auy_A 303 GNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIIT 343 (371)
T ss_dssp SSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEE
T ss_pred cCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEE
Confidence 45 78999999999999999999999888887667866554
No 103
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=57.95 E-value=21 Score=28.18 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=27.3
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCch
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDT 66 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~ 66 (189)
..-+.+|+||+|.|-.. ..+.+..+++..+....+++. ++.+..
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~-~~~~~~ 152 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILS-CNYSSK 152 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEE-ESCGGG
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEE-eCCccc
Confidence 55789999999998532 345566666665555555444 444443
No 104
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=57.52 E-value=8 Score=31.20 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=25.9
Q ss_pred ceeeEEeccchhhhcc-ccHHHHHHHHhhCC-CCCcEEEEeecCC
Q psy9740 22 RIKFLVLDEADRLLSG-IFDEQMRTIFGAVP-KQKQTLLFSATMT 64 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~-~f~~~i~~Il~~l~-~~~Q~il~SATl~ 64 (189)
+...+++||+|.+... ...+.+..++..+. .+.++++. ++.+
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~-~~~~ 141 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILA-SDRH 141 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEE-ESSC
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEE-ecCC
Confidence 4679999999998653 34555555555433 34555554 4543
No 105
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=57.45 E-value=6.9 Score=32.75 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=33.8
Q ss_pred eeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 24 KFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 24 ~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
..+++||.+.=||......+..++..+.++.|+++.|--
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~ 355 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHL 355 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 899999999999999999999999888777888877643
No 106
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.96 E-value=25 Score=28.49 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=28.7
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCc
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTD 65 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~ 65 (189)
+.-+.+|+||+|.|-. +-.+.+..+++..+....+++. ++.+.
T Consensus 109 ~~~~viiiDe~~~l~~-~~~~~L~~~le~~~~~~~~il~-~n~~~ 151 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN-AAQNALRRVIERYTKNTRFCVL-ANYAH 151 (340)
T ss_dssp CSCEEEEETTGGGSCH-HHHHHHHHHHHHTTTTEEEEEE-ESCGG
T ss_pred CCceEEEEeCCCCCCH-HHHHHHHHHHhcCCCCeEEEEE-ecCcc
Confidence 4568999999998843 3456677777776666665554 34433
No 107
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=52.58 E-value=23 Score=29.48 Aligned_cols=63 Identities=17% Similarity=0.026 Sum_probs=37.8
Q ss_pred ceeeEEeccchhhhc---cccHHHHHHHHhhCCCCCcEEEEeecCC-chHH-----HHHHhhccccceeeeec
Q psy9740 22 RIKFLVLDEADRLLS---GIFDEQMRTIFGAVPKQKQTLLFSATMT-DTLE-----QVKSITKKQVGTLLFSA 85 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~---~~f~~~i~~Il~~l~~~~Q~il~SATl~-~~v~-----~l~~~~l~~p~~~~~~~ 85 (189)
.-.++|+|||+.++. ..+.+.+..+++...+.- ..++-||.. .++. +.++..+.+-.+.++-.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g-~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~ 333 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYN-GSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLA 333 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGT-CEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECS
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhC-eEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeC
Confidence 356889999999996 336777888888775433 333445543 2332 34555555544444433
No 108
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=52.00 E-value=9.5 Score=31.06 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=33.5
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
.+-+++++||...-||......+..++..+.+..|+++.|--
T Consensus 240 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~ 281 (322)
T 1e69_A 240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHN 281 (322)
T ss_dssp SCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 456799999999999998888888888777666777766544
No 109
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=51.80 E-value=21 Score=25.23 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=17.7
Q ss_pred eeeEEeccchhhhc-------cccHHHHHHHHh
Q psy9740 23 IKFLVLDEADRLLS-------GIFDEQMRTIFG 48 (189)
Q Consensus 23 l~~lVlDEaD~ll~-------~~f~~~i~~Il~ 48 (189)
-..+++||+|.|.. ......+..++.
T Consensus 116 ~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~ 148 (195)
T 1jbk_A 116 NVILFIDELHTMVGAGKADGAMDAGNMLKPALA 148 (195)
T ss_dssp TEEEEEETGGGGTT------CCCCHHHHHHHHH
T ss_pred CeEEEEeCHHHHhccCcccchHHHHHHHHHhhc
Confidence 45899999999973 334555555553
No 110
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=51.62 E-value=12 Score=28.66 Aligned_cols=39 Identities=8% Similarity=0.042 Sum_probs=22.8
Q ss_pred eeeEEeccchhhhccc--cHHHHHHHHhhCC----CCCcEEEEeec
Q psy9740 23 IKFLVLDEADRLLSGI--FDEQMRTIFGAVP----KQKQTLLFSAT 62 (189)
Q Consensus 23 l~~lVlDEaD~ll~~~--f~~~i~~Il~~l~----~~~Q~il~SAT 62 (189)
-..+|+|||+.++... ..+.+ +++..+. +..|+++++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~-rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIP-ENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCC-HHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhH-HHHHHHHhcCcCCeEEEEECCC
Confidence 4579999999997432 12222 2333332 34577777655
No 111
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=51.45 E-value=14 Score=31.74 Aligned_cols=44 Identities=16% Similarity=0.315 Sum_probs=28.7
Q ss_pred ceeeEEeccchhhhcc-ccHHHHHHHHhhC-CCCCcEEEEeecCCc
Q psy9740 22 RIKFLVLDEADRLLSG-IFDEQMRTIFGAV-PKQKQTLLFSATMTD 65 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~-~f~~~i~~Il~~l-~~~~Q~il~SATl~~ 65 (189)
....|+|||+|.+... ..++.+..++..+ ..+.++++.|...+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHH
Confidence 6789999999999864 3455555555543 345676665544333
No 112
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=51.20 E-value=50 Score=23.57 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=45.7
Q ss_pred hHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy9740 120 HIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDT 187 (189)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns 187 (189)
...++|...+.-..|+++.-.... ..+.|...-+.++......-++.+|+....-.+.+..-+|||.
T Consensus 24 ~e~~~ir~kyP~rIPVIvEr~~~s-~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn 90 (125)
T 3m95_A 24 AEGEKIRRKYPDRVPVIVEKAPKA-RLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN 90 (125)
T ss_dssp HHHHHHHHHCTTEEEEEEEECTTC-SSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTT
T ss_pred HHHHHHHHHCCCeEEEEEEecCCC-CCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECC
Confidence 445555666665656666543332 2456766667788888888899999887656677788888874
No 113
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=51.06 E-value=17 Score=29.24 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=22.3
Q ss_pred eeeEEeccchhhhcc---ccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 23 IKFLVLDEADRLLSG---IFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 23 l~~lVlDEaD~ll~~---~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
-..+|+||+|.+.+. .....+...+..++...-.++++++
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 458999999999854 3444444444433433333444444
No 114
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=50.97 E-value=28 Score=28.08 Aligned_cols=29 Identities=28% Similarity=0.171 Sum_probs=20.6
Q ss_pred ceeeEEeccchhhhccc-cHHHHHHHHhhC
Q psy9740 22 RIKFLVLDEADRLLSGI-FDEQMRTIFGAV 50 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~-f~~~i~~Il~~l 50 (189)
....+++||+|.+.... -.+.+..++...
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 35589999999997653 455666666654
No 115
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.49 E-value=18 Score=29.00 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=27.1
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCch
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDT 66 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~ 66 (189)
..-+.+++||+|.|-.. ....+..+++..+....+++. ++.+..
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~-~~~~~~ 175 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLI-CNYVTR 175 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEE-ESCGGG
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEE-eCchhh
Confidence 34579999999998543 345566666665555545543 444443
No 116
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=48.08 E-value=21 Score=31.87 Aligned_cols=38 Identities=29% Similarity=0.488 Sum_probs=29.2
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
...+++|+|||..+ + .+.+..++..++...+++++.-.
T Consensus 278 ~~~dvlIIDEasml-~---~~~~~~Ll~~~~~~~~lilvGD~ 315 (574)
T 3e1s_A 278 APYDLLIVDEVSMM-G---DALMLSLLAAVPPGARVLLVGDT 315 (574)
T ss_dssp CSCSEEEECCGGGC-C---HHHHHHHHTTSCTTCEEEEEECT
T ss_pred ccCCEEEEcCccCC-C---HHHHHHHHHhCcCCCEEEEEecc
Confidence 35689999999865 3 45778889999988888887543
No 117
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=47.85 E-value=45 Score=24.65 Aligned_cols=38 Identities=8% Similarity=0.117 Sum_probs=25.1
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecC
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl 63 (189)
+..++++|||..+ +.++.+.+..+... +..++++.-+.
T Consensus 76 ~~dvviIDE~Q~~-~~~~~~~l~~l~~~---~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQFF-NPSLFEVVKDLLDR---GIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGGS-CTTHHHHHHHHHHT---TCEEEEEEESB
T ss_pred CCCEEEEECcccC-CHHHHHHHHHHHHC---CCCEEEEeecc
Confidence 5679999999875 44566666666553 55566554433
No 118
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=47.42 E-value=16 Score=29.57 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=22.7
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEE
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLF 59 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~ 59 (189)
+.-+.+|+||+|.|-.. ..+.+...++..+.+..+++.
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~ 155 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLA 155 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEE
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEE
Confidence 34578999999998432 344455555554444444443
No 119
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=47.12 E-value=9.5 Score=28.58 Aligned_cols=43 Identities=16% Similarity=0.458 Sum_probs=25.1
Q ss_pred CceeeEEeccchhhhccc-cHHHHHHHHhhCC-CCCcEEEEeecC
Q psy9740 21 NRIKFLVLDEADRLLSGI-FDEQMRTIFGAVP-KQKQTLLFSATM 63 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~-f~~~i~~Il~~l~-~~~Q~il~SATl 63 (189)
.....+++||+|.+.... ..+.+..++.... .....++++++.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 446789999999986532 3555555555443 233324444443
No 120
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=46.63 E-value=14 Score=30.07 Aligned_cols=27 Identities=26% Similarity=0.153 Sum_probs=17.5
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhh
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGA 49 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~ 49 (189)
.-..+++||+|.+ +......+.+++..
T Consensus 125 ~~~vlilDE~~~l-~~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 125 LYMFLVLDDAFNL-APDILSTFIRLGQE 151 (389)
T ss_dssp CCEEEEEETGGGS-CHHHHHHHHHHTTC
T ss_pred CeEEEEEECcccc-chHHHHHHHHHHHh
Confidence 3568999999999 44444444444433
No 121
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=45.91 E-value=14 Score=31.32 Aligned_cols=41 Identities=22% Similarity=0.219 Sum_probs=33.4
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEee
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFSA 61 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~SA 61 (189)
.+..++++||.+.-||......+..++..+.. +.|+++.|-
T Consensus 354 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th 395 (430)
T 1w1w_A 354 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISL 395 (430)
T ss_dssp SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECS
T ss_pred CCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 56789999999999999988888888877653 678777764
No 122
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=45.69 E-value=18 Score=29.51 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=23.7
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCch
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDT 66 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~ 66 (189)
+.-+.+|+||||.|-.. -.+.+-+.++.-|.+. ++++.++-+..
T Consensus 107 ~~~kvviIdead~l~~~-a~naLLk~lEep~~~~-~~Il~t~~~~~ 150 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDA-AANALLKTLEEPPAET-WFFLATREPER 150 (334)
T ss_dssp SSCEEEEESCGGGBCHH-HHHHHHHHHTSCCTTE-EEEEEESCGGG
T ss_pred CCcEEEEECchhhcCHH-HHHHHHHHhcCCCCCe-EEEEEeCChHh
Confidence 56789999999998533 2333434444322233 33344444443
No 123
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=44.16 E-value=18 Score=29.39 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=18.9
Q ss_pred eEEeccchhhhccccHHH-HHHHHhhC
Q psy9740 25 FLVLDEADRLLSGIFDEQ-MRTIFGAV 50 (189)
Q Consensus 25 ~lVlDEaD~ll~~~f~~~-i~~Il~~l 50 (189)
.+||||+|.+......+. +..++...
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~ 162 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD 162 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC
Confidence 899999999986543455 66666555
No 124
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.07 E-value=15 Score=29.01 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=24.3
Q ss_pred ceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 22 RIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
.-+.+|+||+|.|-.. -.+.+..++...+.+..+++.+
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 3679999999998543 2344555555555555555544
No 125
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=42.94 E-value=22 Score=29.38 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=23.8
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhh--CCC-CCcEEEEeecC
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGA--VPK-QKQTLLFSATM 63 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~--l~~-~~Q~il~SATl 63 (189)
+..-.+++||+|.|.+ ++-+..++.. .+. +.-+++.++|+
T Consensus 131 ~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 131 KRKTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp SCEEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred CCceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCc
Confidence 3456889999999983 3344444432 222 23445667776
No 126
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=42.83 E-value=18 Score=29.43 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=27.3
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLE 68 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~ 68 (189)
.+.-+.+|+||||.|-.. -.+.+.+.++.-|+.. ++++.++-+..+.
T Consensus 80 ~~~~kvviIdead~lt~~-a~naLLk~LEep~~~t-~fIl~t~~~~kl~ 126 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYA-VIVLNTRRWHYLL 126 (305)
T ss_dssp SSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTE-EEEEEESCGGGSC
T ss_pred cCCceEEEeccHHHhCHH-HHHHHHHHHhCCCCCe-EEEEEECChHhCh
Confidence 456789999999998533 2344445555433333 3444455555443
No 127
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=40.22 E-value=27 Score=24.48 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=21.9
Q ss_pred eeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecC
Q psy9740 24 KFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 24 ~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl 63 (189)
..+++||+|.|-. ..+..+-.++...+.+..++ ++++.
T Consensus 78 g~l~ldei~~l~~-~~q~~Ll~~l~~~~~~~~~I-~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTR-EQQYHLVQLQSQEHRPFRLI-GIGDT 115 (145)
T ss_dssp SCEEEECGGGSCH-HHHHHHHHHHHSSSCSSCEE-EEESS
T ss_pred cEEEEcChHHCCH-HHHHHHHHHHhhcCCCEEEE-EECCc
Confidence 4799999998842 34445555554444444444 33443
No 128
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=39.97 E-value=30 Score=30.23 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=27.6
Q ss_pred eeeEEeccchhhhccc----------cHHHHHHHHhhCCCCCcEEEEeecCCc
Q psy9740 23 IKFLVLDEADRLLSGI----------FDEQMRTIFGAVPKQKQTLLFSATMTD 65 (189)
Q Consensus 23 l~~lVlDEaD~ll~~~----------f~~~i~~Il~~l~~~~Q~il~SATl~~ 65 (189)
...++|||+|.|.... ....+-+.+..+.....++++.||=.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 3589999999997531 233444555555556667777777543
No 129
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=39.79 E-value=27 Score=27.66 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=23.7
Q ss_pred eeeEEeccchhhhc------cccHHHHHHHHhhCCCCCcEEEE
Q psy9740 23 IKFLVLDEADRLLS------GIFDEQMRTIFGAVPKQKQTLLF 59 (189)
Q Consensus 23 l~~lVlDEaD~ll~------~~f~~~i~~Il~~l~~~~Q~il~ 59 (189)
--.+|+||+|.+.+ ..+...+..++...+ +..++++
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~-~~~~il~ 170 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLP-NLKIILT 170 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCT-TEEEEEE
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcC-CeEEEEE
Confidence 34789999999976 246667777766542 4444444
No 130
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=38.06 E-value=10 Score=33.19 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=31.7
Q ss_pred eeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEee
Q psy9740 24 KFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSA 61 (189)
Q Consensus 24 ~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SA 61 (189)
+++++||-+.=||......+..++..+.++.|+++.|-
T Consensus 419 ~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH 456 (517)
T 4ad8_A 419 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTH 456 (517)
T ss_dssp SEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECC
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 89999999999999988888888887766667666654
No 131
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=37.92 E-value=61 Score=25.08 Aligned_cols=51 Identities=8% Similarity=0.025 Sum_probs=28.2
Q ss_pred hHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEee
Q psy9740 5 PGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSA 61 (189)
Q Consensus 5 Pgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SA 61 (189)
+..+++.+.. ...-.+..++|+|||..+ +....+.+..+.+ .+..++++.-
T Consensus 74 ~~~i~~~i~~--~~~~~~~dvViIDEaQ~l-~~~~ve~l~~L~~---~gi~Vil~Gl 124 (223)
T 2b8t_A 74 APEILNYIMS--NSFNDETKVIGIDEVQFF-DDRICEVANILAE---NGFVVIISGL 124 (223)
T ss_dssp THHHHHHHHS--TTSCTTCCEEEECSGGGS-CTHHHHHHHHHHH---TTCEEEEECC
T ss_pred HHHHHHHHHH--HhhCCCCCEEEEecCccC-cHHHHHHHHHHHh---CCCeEEEEec
Confidence 3455555543 222345789999999763 3334444544443 2555666543
No 132
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=37.41 E-value=42 Score=28.59 Aligned_cols=38 Identities=13% Similarity=0.304 Sum_probs=25.7
Q ss_pred ccCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEe
Q psy9740 19 SLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60 (189)
Q Consensus 19 ~l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~S 60 (189)
.+...+++|+|||..+ + ...+..++..++...+++++.
T Consensus 125 ~~~~~~~iiiDE~~~~-~---~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 125 DLAKCRVLICDEVSMY-D---RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp CCSSCSEEEESCGGGC-C---HHHHHHHHHHSCTTCEEEEEE
T ss_pred cccCCCEEEEECchhC-C---HHHHHHHHHhccCCCEEEEEC
Confidence 4567889999999954 3 345556666666666666654
No 133
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=36.90 E-value=27 Score=25.23 Aligned_cols=40 Identities=30% Similarity=0.345 Sum_probs=31.8
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEe
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFS 60 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~S 60 (189)
.+.+++++||--.-||......+..++..+.+ ..++++.|
T Consensus 80 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 80 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred CCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 46789999999999999989999998888754 45555554
No 134
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=36.31 E-value=1.2e+02 Score=21.72 Aligned_cols=68 Identities=18% Similarity=0.128 Sum_probs=43.5
Q ss_pred hHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEE-EecC
Q psy9740 120 HIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVI-FTDT 187 (189)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iI-F~ns 187 (189)
...++|...+....++++.-.......+.|...-+.++......-++..|+......+.+..-+ |+|.
T Consensus 23 ~e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~ 91 (130)
T 2zjd_A 23 EDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGH 91 (130)
T ss_dssp HHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTT
T ss_pred HHHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECC
Confidence 3445555566655566654333333245666666678888889999999988765566666656 7775
No 135
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=35.47 E-value=27 Score=28.59 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=12.2
Q ss_pred eeeEEeccchhhhcc
Q psy9740 23 IKFLVLDEADRLLSG 37 (189)
Q Consensus 23 l~~lVlDEaD~ll~~ 37 (189)
--.+||||+|.+...
T Consensus 139 ~~llvlDe~~~l~~~ 153 (412)
T 1w5s_A 139 YLLVILDEFQSMLSS 153 (412)
T ss_dssp EEEEEEESTHHHHSC
T ss_pred eEEEEEeCHHHHhhc
Confidence 457899999999763
No 136
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=35.42 E-value=43 Score=26.90 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=12.0
Q ss_pred eeeEEeccchhhhc
Q psy9740 23 IKFLVLDEADRLLS 36 (189)
Q Consensus 23 l~~lVlDEaD~ll~ 36 (189)
-..++|||+|.|..
T Consensus 111 ~~vl~iDEid~l~~ 124 (322)
T 3eie_A 111 PSIIFIDQVDALTG 124 (322)
T ss_dssp SEEEEEECGGGGSC
T ss_pred CeEEEechhhhhhc
Confidence 36899999999975
No 137
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=34.55 E-value=41 Score=26.78 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=23.8
Q ss_pred eeeEEeccchhhhcc---------c----cHHHHHHHHhhCCCCCcEEEEeecC
Q psy9740 23 IKFLVLDEADRLLSG---------I----FDEQMRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 23 l~~lVlDEaD~ll~~---------~----f~~~i~~Il~~l~~~~Q~il~SATl 63 (189)
-..+++||+|.|... + ....+-..+..+.....++++.||=
T Consensus 109 p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn 162 (301)
T 3cf0_A 109 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 162 (301)
T ss_dssp SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEES
T ss_pred CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecC
Confidence 368999999998732 0 1233333444444445566666664
No 138
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=34.07 E-value=41 Score=26.35 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=13.0
Q ss_pred ceeeEEeccchhhhcc
Q psy9740 22 RIKFLVLDEADRLLSG 37 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~ 37 (189)
.-..+++||+|.++..
T Consensus 113 ~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 113 QPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CSEEEEEETGGGTSBC
T ss_pred CCcEEEeccHHHhccc
Confidence 3478999999999754
No 139
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=32.27 E-value=1.3e+02 Score=21.08 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=45.9
Q ss_pred hHHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy9740 120 HIVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDT 187 (189)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns 187 (189)
...++|...+.-..++++.-.... ..+.|...-+.++......-++.+|+....-.+.+..-+|||.
T Consensus 19 ~e~~~ir~kyP~rIPVIvEr~~~~-~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~ 85 (119)
T 3h9d_A 19 SDAAKVRERHPDRLPIICEKVYNS-DIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTND 85 (119)
T ss_dssp HHHHHHHHHSTTEEEEEEEECTTS-SCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETT
T ss_pred HHHHHHHHHCCCeEEEEEEecCCC-CCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECC
Confidence 344555566655556665543332 2455777777888888998999999887656677788889885
No 140
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=31.97 E-value=11 Score=17.97 Aligned_cols=9 Identities=11% Similarity=0.335 Sum_probs=6.4
Q ss_pred eEEEEecCC
Q psy9740 180 AIVIFTDTC 188 (189)
Q Consensus 180 ~~iIF~ns~ 188 (189)
--|||||.+
T Consensus 6 vpiiycnrr 14 (21)
T 8tfv_A 6 VPIIYCNRR 14 (26)
T ss_dssp CCCEEEEGG
T ss_pred ccEEEEcCc
Confidence 347899865
No 141
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.61 E-value=52 Score=28.56 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=25.5
Q ss_pred CceeeEEeccchhhhcc--ccHHHHHHHHhhCCCCCcEEEEeecC
Q psy9740 21 NRIKFLVLDEADRLLSG--IFDEQMRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~--~f~~~i~~Il~~l~~~~Q~il~SATl 63 (189)
..-..++|||+|.|... +....+..+++. ....+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 34568899999999753 344555555554 233466666653
No 142
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=31.53 E-value=57 Score=25.71 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=23.9
Q ss_pred eeEEeccchhhhc---cccHHHHHHHHhhCCCCCcEEEE
Q psy9740 24 KFLVLDEADRLLS---GIFDEQMRTIFGAVPKQKQTLLF 59 (189)
Q Consensus 24 ~~lVlDEaD~ll~---~~f~~~i~~Il~~l~~~~Q~il~ 59 (189)
-.+|+||+|.+.+ ..+...+..+....+ +..++++
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~ 176 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMS 176 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEE
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEE
Confidence 4789999999975 357777887776543 3334443
No 143
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=31.46 E-value=14 Score=29.12 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=13.0
Q ss_pred CceeeEEeccchhhhc
Q psy9740 21 NRIKFLVLDEADRLLS 36 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~ 36 (189)
.+-+.+|+||+|.|-.
T Consensus 101 ~~~~vliiDe~~~l~~ 116 (319)
T 2chq_A 101 APFKIIFLDEADALTA 116 (319)
T ss_dssp CCCEEEEEETGGGSCH
T ss_pred CCceEEEEeCCCcCCH
Confidence 4568899999999843
No 144
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=31.39 E-value=47 Score=26.75 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=28.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecC
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATM 63 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl 63 (189)
++.=+.+|+||+|.-+..+..+.+...++..|++.-+++.+.++
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~ 117 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKL 117 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCC
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 46678999999998234455666667777655555555554344
No 145
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=30.12 E-value=46 Score=28.69 Aligned_cols=56 Identities=16% Similarity=0.301 Sum_probs=42.9
Q ss_pred CceeeEEeccchhhh---ccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhhcc
Q psy9740 21 NRIKFLVLDEADRLL---SGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSITKK 76 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll---~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~l~ 76 (189)
.+.+++++|++-++- +.++..++..|...+....-++..+|+...++.+.++.+..
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~ 236 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQ 236 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhc
Confidence 467899999998753 45578888888888766666677889887777777777663
No 146
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=30.09 E-value=57 Score=24.74 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=7.7
Q ss_pred eeeEEeccchhhhc
Q psy9740 23 IKFLVLDEADRLLS 36 (189)
Q Consensus 23 l~~lVlDEaD~ll~ 36 (189)
-..+++||+|.|..
T Consensus 99 ~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 99 PCIVYIDEIDAVGK 112 (262)
T ss_dssp SEEEEEECC-----
T ss_pred CeEEEEeCcchhhc
Confidence 46899999999963
No 147
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=29.69 E-value=9.9 Score=29.41 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=39.7
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHHhh
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKSIT 74 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~~~ 74 (189)
+.+.+++++||--.-||......+..++..+.+.-.+++++..-...+..+++..
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v 203 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENL 203 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEG
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 4678999999999999999999999888777533346666555555555444333
No 148
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=29.41 E-value=57 Score=26.77 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=12.4
Q ss_pred ceeeEEeccchhhhc
Q psy9740 22 RIKFLVLDEADRLLS 36 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~ 36 (189)
.-..++|||+|.|..
T Consensus 143 ~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 143 KPSIIFIDQVDALTG 157 (355)
T ss_dssp SSEEEEEECGGGGTC
T ss_pred CCeEEEEechHhhcc
Confidence 446899999999974
No 149
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=28.21 E-value=44 Score=27.40 Aligned_cols=15 Identities=40% Similarity=0.589 Sum_probs=12.4
Q ss_pred ceeeEEeccchhhhc
Q psy9740 22 RIKFLVLDEADRLLS 36 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~ 36 (189)
.-..++|||+|.|..
T Consensus 176 ~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 176 QPAVIFIDEIDSLLS 190 (357)
T ss_dssp CSEEEEEETHHHHTB
T ss_pred CCeEEEEeCchhhhc
Confidence 346899999999975
No 150
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=28.16 E-value=20 Score=32.19 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=12.0
Q ss_pred eeeEEeccchhhhc
Q psy9740 23 IKFLVLDEADRLLS 36 (189)
Q Consensus 23 l~~lVlDEaD~ll~ 36 (189)
-..+|+||||.|.+
T Consensus 205 ~~ivI~DEAHNL~d 218 (620)
T 4a15_A 205 QIVIILDEAHNLPD 218 (620)
T ss_dssp GEEEEETTGGGHHH
T ss_pred CeEEEEECCCchHH
Confidence 35899999999976
No 151
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=28.15 E-value=29 Score=26.15 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=31.3
Q ss_pred CceeeEEeccchhhhc-----cccHHHHHHHHhhCCCCCcEEEEeecCCchH
Q psy9740 21 NRIKFLVLDEADRLLS-----GIFDEQMRTIFGAVPKQKQTLLFSATMTDTL 67 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~-----~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v 67 (189)
.+.+.+++||.-.+++ ......+..+++.+.+.--+++++.-...++
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 5678999999999987 5566668888777754334566655544443
No 152
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=27.12 E-value=25 Score=27.94 Aligned_cols=53 Identities=11% Similarity=0.156 Sum_probs=37.9
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.-||......+..++..+.+.-.+++++.--...+..++.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d 227 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGD 227 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCC
Confidence 46788999999999999998999988888775444466665433344444443
No 153
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=26.80 E-value=91 Score=24.11 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=13.1
Q ss_pred ceeeEEeccchhhhcc
Q psy9740 22 RIKFLVLDEADRLLSG 37 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~~ 37 (189)
.-..+++||+|.|...
T Consensus 116 ~~~vl~iDEi~~l~~~ 131 (310)
T 1ofh_A 116 QNGIVFIDEIDKICKK 131 (310)
T ss_dssp HHCEEEEECGGGGSCC
T ss_pred CCCEEEEEChhhcCcc
Confidence 3578999999999754
No 154
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=26.52 E-value=66 Score=25.64 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=21.4
Q ss_pred hHhhHHHHhcCCCcccCceeeEEeccchhhhccccHHHHHHHH
Q psy9740 5 PGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIF 47 (189)
Q Consensus 5 Pgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~Il 47 (189)
+|.+...+.. ..+-..++|||+|.|-. .....+...+
T Consensus 94 ~~~~~~~~~~-----~~~~~vl~lDEi~~l~~-~~~~~Ll~~l 130 (338)
T 3pfi_A 94 SGDLAAILTN-----LSEGDILFIDEIHRLSP-AIEEVLYPAM 130 (338)
T ss_dssp HHHHHHHHHT-----CCTTCEEEEETGGGCCH-HHHHHHHHHH
T ss_pred hhHHHHHHHh-----ccCCCEEEEechhhcCH-HHHHHHHHHH
Confidence 3444444443 34557999999999852 2333343444
No 155
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=26.51 E-value=23 Score=27.53 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=37.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+.+++||--.-||......+..++..+.+.-.+++++..-...+..++.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d 207 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH 207 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCS
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 46789999999999999998999888887775333355555433334455543
No 156
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=25.99 E-value=26 Score=27.62 Aligned_cols=53 Identities=13% Similarity=0.265 Sum_probs=37.7
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCC-CcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQ-KQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~-~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.-||......+..++..+.+. -.+++++.--...+..++.
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d 197 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIAN 197 (253)
T ss_dssp HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCS
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 3667899999999999999999999888877543 3456665443344444443
No 157
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=25.63 E-value=65 Score=25.50 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=33.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCC-CCcEEEEee
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPK-QKQTLLFSA 61 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~-~~Q~il~SA 61 (189)
+.+.+++++||.-.-||......+..++..+.+ .-.+++++.
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivt 214 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLIT 214 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEEC
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 467899999999999999999999999988864 234555543
No 158
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=25.41 E-value=75 Score=25.55 Aligned_cols=12 Identities=33% Similarity=0.362 Sum_probs=10.5
Q ss_pred eeEEeccchhhh
Q psy9740 24 KFLVLDEADRLL 35 (189)
Q Consensus 24 ~~lVlDEaD~ll 35 (189)
..++|||+|.|-
T Consensus 191 ~vl~IDEi~~l~ 202 (368)
T 3uk6_A 191 GVLFIDEVHMLD 202 (368)
T ss_dssp CEEEEESGGGSB
T ss_pred ceEEEhhccccC
Confidence 489999999984
No 159
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=25.35 E-value=38 Score=26.87 Aligned_cols=50 Identities=14% Similarity=0.069 Sum_probs=38.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
+.+.+++++||--.-||......+..++..+.+ +++++..-...+..++.
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d 193 (263)
T 2pjz_A 144 ASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKE 193 (263)
T ss_dssp HTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTT
T ss_pred HhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcC
Confidence 466789999999999999999999999988855 77776554444444444
No 160
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=24.26 E-value=22 Score=28.22 Aligned_cols=52 Identities=15% Similarity=0.088 Sum_probs=37.6
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHH
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVK 71 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~ 71 (189)
+.+.+++++||--.-||......+..++..+.+.--+++++.--...+..++
T Consensus 154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~ 205 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHV 205 (266)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGC
T ss_pred HcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 4678999999999999999999999888877533345666544444444443
No 161
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=24.17 E-value=47 Score=25.93 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=19.4
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhC
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAV 50 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l 50 (189)
.+.+.+++||||.-.-....+.++.+++--
T Consensus 102 ~~~kIiiLDEad~~~~~~~d~~lrn~ldG~ 131 (212)
T 1tue_A 102 TDTKVAMLDDATTTCWTYFDTYMRNALDGN 131 (212)
T ss_dssp TTCSSEEEEEECHHHHHHHHHHCHHHHHTC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHHhCCC
Confidence 468899999999643222344566666553
No 162
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=24.13 E-value=38 Score=26.37 Aligned_cols=46 Identities=13% Similarity=0.223 Sum_probs=33.6
Q ss_pred eehHhhHHHHhcCCCcccCceeeEEeccchhhhc----cccHHHHHHH-HhhCC
Q psy9740 3 ATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS----GIFDEQMRTI-FGAVP 51 (189)
Q Consensus 3 ~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~----~~f~~~i~~I-l~~l~ 51 (189)
.||..+.+.+.. ..++++++.++-+|| +.+. .++...+++- ++.++
T Consensus 44 stp~~~y~~L~~-~~i~w~~v~~f~~DE--r~vp~~~~~Sn~~~~~~~ll~~~~ 94 (232)
T 3lhi_A 44 RSPIAFFNALSQ-KDLDWKNVGITLADE--RIVPTNHADSNTGLVREYLLKNKA 94 (232)
T ss_dssp STTHHHHHHHHT-SCCCGGGEEEEESEE--ESSCTTSTTCHHHHHHHHTSSGGG
T ss_pred CCHHHHHHHHHh-cCCCchheEEEEeee--ccCCCCChHHHHHHHHHHhccCCC
Confidence 389999999887 789999999999999 3343 2456666543 44444
No 163
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=24.09 E-value=1.8e+02 Score=20.10 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCcceeEeecCccccchhhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy9740 121 IVAQIITQLDPVHVFVWESKQDVATVEELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDT 187 (189)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns 187 (189)
...+|...+....++++.-.... ..+.|...-+.++......-++..|+......+.+..-+|||.
T Consensus 17 e~~~ir~kyP~~IPVIve~~~~s-~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~ 82 (117)
T 1eo6_A 17 ESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDK 82 (117)
T ss_dssp HHHHHHHHCTTEEEEEEEECTTC-SSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTT
T ss_pred HHHHHHHHCCCeEEEEEEecCCC-CCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECC
Confidence 34444555544445555433222 2456666666678778888888888876656666677778875
No 164
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=23.58 E-value=71 Score=23.44 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=22.8
Q ss_pred cCceeeEEecc--chhhhccccHHHHHHHHhh
Q psy9740 20 LNRIKFLVLDE--ADRLLSGIFDEQMRTIFGA 49 (189)
Q Consensus 20 l~~l~~lVlDE--aD~ll~~~f~~~i~~Il~~ 49 (189)
..+.+++++|| .-..++..+.+.+..++..
T Consensus 97 ~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 34568999999 5566777788888888765
No 165
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=23.27 E-value=41 Score=26.17 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=31.6
Q ss_pred eehHhhHHHHhcCCCcccCceeeEEeccchhhhc----cccHHHHHHH
Q psy9740 3 ATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS----GIFDEQMRTI 46 (189)
Q Consensus 3 ~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~----~~f~~~i~~I 46 (189)
.||..+.+.+.. ..++++++.++-+||- .+. .++...+++-
T Consensus 43 stp~~~y~~L~~-~~idw~~v~~f~~DEr--~vp~~~~~Sn~~~~~~~ 87 (226)
T 3lwd_A 43 STPKPFFTSLAA-KALPWARVDVTLADER--WVTADDADSNARLVRET 87 (226)
T ss_dssp STTHHHHHHHHT-SCSCGGGEEEEESEEE--SSCTTSTTCHHHHHHHH
T ss_pred CCHHHHHHHHHh-cCCCchhEEEEEeeec--ccCCCChHHHHHHHHHH
Confidence 389999999987 8899999999999993 342 2466666653
No 166
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=22.88 E-value=73 Score=26.26 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=10.9
Q ss_pred eeEEeccchhhhc
Q psy9740 24 KFLVLDEADRLLS 36 (189)
Q Consensus 24 ~~lVlDEaD~ll~ 36 (189)
..|+|||+|.|+.
T Consensus 209 ~il~iDEid~l~~ 221 (389)
T 3vfd_A 209 SIIFIDQVDSLLC 221 (389)
T ss_dssp EEEEEETGGGGC-
T ss_pred eEEEEECchhhcc
Confidence 6899999999963
No 167
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=22.58 E-value=1.1e+02 Score=20.34 Aligned_cols=41 Identities=5% Similarity=0.041 Sum_probs=33.5
Q ss_pred hhcceeEEEecCcchHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy9740 147 EELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDT 187 (189)
Q Consensus 147 ~~l~q~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~iIF~ns 187 (189)
+.|...-+.++.......++.+|+....-.+.+..-+|||.
T Consensus 17 P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn 57 (91)
T 4gdk_A 17 PIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQ 57 (91)
T ss_dssp CCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETT
T ss_pred CcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 56778888889889999999999887655667788899986
No 168
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=22.58 E-value=41 Score=26.29 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=33.5
Q ss_pred eehHhhHHHHhcCCCcccCceeeEEeccchhhhc----cccHHHHHHH-HhhCC
Q psy9740 3 ATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLS----GIFDEQMRTI-FGAVP 51 (189)
Q Consensus 3 ~TPgrl~~ll~~~~~~~l~~l~~lVlDEaD~ll~----~~f~~~i~~I-l~~l~ 51 (189)
.||..+.+.+.. ..++++++.++-+||- .+. .++...+++- ++.++
T Consensus 47 stp~~~y~~L~~-~~idw~~v~~f~~DEr--~vp~~~~~Sn~~~~~~~ll~~~~ 97 (233)
T 3nwp_A 47 STPLKLFQLLSM-KSIDWSDVYITLADER--WVEADADASNERLVREHLLQNRA 97 (233)
T ss_dssp STTHHHHHHHHH-CCSCGGGEEEEESEEE--SSCTTSTTCHHHHHHHHTSSGGG
T ss_pred CCHHHHHHHHHh-cCCChhHeEEEeCeec--ccCCCChHHHHHHHHHHhhccCC
Confidence 389999999887 8899999999999993 343 2356666543 45444
No 169
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=22.06 E-value=62 Score=23.76 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=23.5
Q ss_pred Ccee--eEEeccchhhh--ccccHHHHHHHHhhCC-CCCcEEEEeecCC
Q psy9740 21 NRIK--FLVLDEADRLL--SGIFDEQMRTIFGAVP-KQKQTLLFSATMT 64 (189)
Q Consensus 21 ~~l~--~lVlDEaD~ll--~~~f~~~i~~Il~~l~-~~~Q~il~SATl~ 64 (189)
.+.+ .+|+||...++ +......+...+..+. +.--+++++.-..
T Consensus 120 ~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 120 LGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp HCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred hCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 3567 99999999887 5433344444443332 2223455544443
No 170
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=21.77 E-value=65 Score=25.08 Aligned_cols=42 Identities=19% Similarity=0.018 Sum_probs=32.7
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
.+.+++++||.-.-||......+..++..+.+.-.+++++..
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 201 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH 201 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECS
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 557899999999999999999999988887543345555443
No 171
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=21.72 E-value=21 Score=28.24 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=33.4
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
+.+.+++++||--.-||......+..++..+.+.-.+++++.-
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtH 204 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 4678999999999999999899988888777543346666543
No 172
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=21.47 E-value=70 Score=25.99 Aligned_cols=40 Identities=30% Similarity=0.345 Sum_probs=31.1
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCC-CCCcEEEEe
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVP-KQKQTLLFS 60 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~-~~~Q~il~S 60 (189)
.+.+++++||--.-||......+..++..+. ...|+++.|
T Consensus 271 ~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~s 311 (339)
T 3qkt_A 271 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 311 (339)
T ss_dssp TTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4678999999999999988888888887764 345555544
No 173
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=21.40 E-value=36 Score=26.77 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=34.5
Q ss_pred eEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeecCCchHHHHHH
Q psy9740 25 FLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQVKS 72 (189)
Q Consensus 25 ~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~~~v~~l~~ 72 (189)
++++||--.-||......+..++..+.+.-.+++++..-...+..++.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d 201 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAH 201 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999998888775334466665443334444443
No 174
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=21.24 E-value=95 Score=26.32 Aligned_cols=24 Identities=25% Similarity=0.201 Sum_probs=16.0
Q ss_pred eeEEeccchhhhccccHHHHHHHHhhCC
Q psy9740 24 KFLVLDEADRLLSGIFDEQMRTIFGAVP 51 (189)
Q Consensus 24 ~~lVlDEaD~ll~~~f~~~i~~Il~~l~ 51 (189)
+.+++||||.|- .+....+++.+.
T Consensus 297 ~VliIDEa~~l~----~~a~~aLlk~lE 320 (456)
T 2c9o_A 297 GVLFVDEVHMLD----IECFTYLHRALE 320 (456)
T ss_dssp CEEEEESGGGCB----HHHHHHHHHHTT
T ss_pred eEEEEechhhcC----HHHHHHHHHHhh
Confidence 589999999983 334444555553
No 175
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=21.10 E-value=86 Score=25.24 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.2
Q ss_pred ceeeEEeccchhhhc
Q psy9740 22 RIKFLVLDEADRLLS 36 (189)
Q Consensus 22 ~l~~lVlDEaD~ll~ 36 (189)
....++|||+|.+..
T Consensus 105 ~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 105 KPSIIFIDEIDSLCG 119 (322)
T ss_dssp SSEEEEEETTTGGGC
T ss_pred CCcEEEeecHHHhcc
Confidence 346899999999963
No 176
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=20.92 E-value=51 Score=25.68 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=32.5
Q ss_pred cCceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEeec
Q psy9740 20 LNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSAT 62 (189)
Q Consensus 20 l~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SAT 62 (189)
+.+.+++++||.-.-||......+..++..+.+ -.+++++..
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-g~tviivtH 202 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAH 202 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECS
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEeC
Confidence 466789999999999999888888888877743 345666544
No 177
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=20.58 E-value=1.4e+02 Score=22.60 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=11.6
Q ss_pred eeeEEeccchhhhc
Q psy9740 23 IKFLVLDEADRLLS 36 (189)
Q Consensus 23 l~~lVlDEaD~ll~ 36 (189)
...+++||+|.|..
T Consensus 105 ~~il~iDeid~l~~ 118 (257)
T 1lv7_A 105 PCIIFIDEIDAVGR 118 (257)
T ss_dssp SEEEEETTHHHHTC
T ss_pred Ceeehhhhhhhhcc
Confidence 35899999999974
No 178
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=20.38 E-value=77 Score=24.96 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=32.9
Q ss_pred CceeeEEeccchhhhccccHHHHHHHHhhCCCCCcEEEEee
Q psy9740 21 NRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSA 61 (189)
Q Consensus 21 ~~l~~lVlDEaD~ll~~~f~~~i~~Il~~l~~~~Q~il~SA 61 (189)
.+.+++++||--.-||......+..++..+.+.-.+++++.
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivt 221 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVT 221 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEEC
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 56789999999999999999999999988864444566543
No 179
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=20.02 E-value=26 Score=27.03 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=11.9
Q ss_pred eeeEEeccchhhhc
Q psy9740 23 IKFLVLDEADRLLS 36 (189)
Q Consensus 23 l~~lVlDEaD~ll~ 36 (189)
...+++||+|.|..
T Consensus 104 ~~vl~iDEid~l~~ 117 (268)
T 2r62_A 104 PSIIFIDEIDAIGK 117 (268)
T ss_dssp SCEEEESCGGGTTC
T ss_pred CeEEEEeChhhhcc
Confidence 36899999999964
Done!