RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9740
(189 letters)
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 86.7 bits (214), Expect = 5e-22
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V+ TPGR+ DH++ T +L +K+ +LDEAD +L+ F + + I A K K+ LLFS
Sbjct: 125 VVGTPGRILDHINR-GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFS 183
Query: 61 ATMTDTLEQV 70
ATM + +
Sbjct: 184 ATMPREILNL 193
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 64.4 bits (156), Expect = 9e-14
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V+ TPGR+ D+ F ++IK +LDEAD +LS F EQ+ IF +P Q +L S
Sbjct: 131 VVGTPGRVFDN-IQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLS 189
Query: 61 ATMTDTLEQVKSITKK 76
ATM + V +T K
Sbjct: 190 ATMPN---DVLEVTTK 202
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 60.3 bits (145), Expect = 4e-12
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
++ TPGR+ D L+ S IK VLDEAD +LS F +Q+ IF + Q +L S
Sbjct: 135 IVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLS 193
Query: 61 ATMTDTLEQVKSITKK 76
ATM V +TKK
Sbjct: 194 ATMPS---DVLEVTKK 206
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 57.7 bits (138), Expect = 3e-11
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
VIATPGR+ D ++ ++ +VLDEAD+LLS F + M I +PK +Q LL+S
Sbjct: 126 VIATPGRILDL-IKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYS 184
Query: 61 ATMTDTLEQVKSITKK 76
AT V+
Sbjct: 185 ATFPL---SVQKFMNS 197
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 57.9 bits (139), Expect = 3e-11
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
V TPGR+ D + IK LVLDEAD +L+ F EQ+ ++ +P Q +L S
Sbjct: 139 VAGTPGRVFDM-IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 197
Query: 61 ATMTDTLEQVKSITKK 76
AT+ ++ +T K
Sbjct: 198 ATLPH---EILEMTNK 210
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 56.4 bits (135), Expect = 9e-11
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFD-EQMRTIFGAVPKQKQTLLF 59
V+ TPGR+ + +L IK +LDE D++L + ++ IF P +KQ ++F
Sbjct: 125 VVGTPGRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMF 183
Query: 60 SATMTDTLEQV 70
SAT++ + V
Sbjct: 184 SATLSKEIRPV 194
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 52.6 bits (125), Expect = 3e-09
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 16/80 (20%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGI-----------FDEQMRTIFGA 49
VI T L+ H L F+ +D+ D +L F ++T
Sbjct: 146 VITTTQFLSKHY-----RELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWV 200
Query: 50 VPKQKQTLLFSATMTDTLEQ 69
+ ++ +AT +
Sbjct: 201 GEARGCLMVSTATAKKGKKA 220
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 51.9 bits (123), Expect = 3e-09
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
++ TPGR+ D + L+ ++DEAD++LS F + I +P Q+LLFS
Sbjct: 123 LVGTPGRVLDL-ASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFS 181
Query: 61 ATMTDTLEQVKSITKK 76
AT VK K
Sbjct: 182 ATFPL---TVKEFMVK 194
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 49.9 bits (118), Expect = 2e-08
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAV----PKQKQT 56
++ATPGRL D ++ N SL K++VLDEADR+L F+ Q+R I +QT
Sbjct: 152 LVATPGRLVDFIE-KNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQT 210
Query: 57 LLFSATMTDTLEQV 70
L+FSAT ++++
Sbjct: 211 LMFSATFPKEIQKL 224
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 43.9 bits (102), Expect = 2e-06
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
++ + ++ LV+DEAD +L F + I +PK Q L+FS
Sbjct: 126 IVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFS 185
Query: 61 ATMTDTLEQVKSITKK 76
AT+ + ++K KK
Sbjct: 186 ATIPE---KLKPFLKK 198
Score = 31.6 bits (70), Expect = 0.039
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 67 LEQVKSITKKQVGTLLFSATMTDTLEQVKSITKK 100
++Q+ + K + L+FSAT+ + ++K KK
Sbjct: 168 VDQIAARMPKDLQMLVFSATIPE---KLKPFLKK 198
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 39.0 bits (89), Expect = 1e-04
Identities = 11/67 (16%), Positives = 24/67 (35%)
Query: 10 DHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFSATMTDTLEQ 69
++ SL + +V DEA R + + + K + +A+ T E+
Sbjct: 113 ENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEK 172
Query: 70 VKSITKK 76
+ +
Sbjct: 173 IMEVINN 179
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 37.2 bits (85), Expect = 6e-04
Identities = 6/70 (8%), Positives = 18/70 (25%), Gaps = 2/70 (2%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQTLLFS 60
+ L + + +++DEA + + + +
Sbjct: 81 DLMCHATFTMRLL--SPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMT 138
Query: 61 ATMTDTLEQV 70
AT + +
Sbjct: 139 ATPPGSRDPF 148
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 35.0 bits (79), Expect = 0.002
Identities = 9/73 (12%), Positives = 18/73 (24%), Gaps = 4/73 (5%)
Query: 1 VIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLL----SGIFDEQMRTIFGAVPKQKQT 56
++ + + L +DEA + +
Sbjct: 118 LLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPF 177
Query: 57 LLFSATMTDTLEQ 69
+ +AT DT Q
Sbjct: 178 MALTATADDTTRQ 190
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 34.2 bits (77), Expect = 0.006
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 11 HLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIFG---AVPKQKQTLLFSATMTDTL 67
L + + LV+DE L S + + + K + + SAT +
Sbjct: 127 SLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVT 186
Query: 68 E 68
E
Sbjct: 187 E 187
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 29.6 bits (65), Expect = 0.15
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 145 TVEELDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189
T++ + QYY K L L+ + AI+ T R
Sbjct: 3 TLKGITQYYAFVEERQKLHCL---NTLFSKLQINQAIIFCNSTNR 44
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.9 bits (63), Expect = 0.30
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 149 LDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189
L QYYV + K+ L + + + +VIF + +
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLDVLEFNQ----VVIFVKSVQ 38
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 72
Score = 25.8 bits (57), Expect = 1.0
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 8 LADHLDTCNTFSLNRIKFLVLDEADRLLSGIFDEQMRTIF 47
LA + ++NRI+ L + L+G+ D++ + I+
Sbjct: 27 LAFQMGLRTQDAINRIQDL---LTEGTLTGVIDDRGKFIY 63
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.9 bits (58), Expect = 1.2
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 145 TVEELDQYYVLCPYDV-KDGYLVETVRLYREKSPRGAIVIF 184
T+ + QYYVLC + K L +Y + AI+
Sbjct: 2 TLNNIRQYYVLCEHRKDKYQAL---CNIYGSITIGQAIIFC 39
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 26.1 bits (56), Expect = 2.2
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 149 LDQYYVLCPYDVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189
++Q YV + + L RL + K G ++F T R
Sbjct: 4 IEQSYVEVNENERFEAL---CRLLKNKEFYG--LVFCKTKR 39
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 25.1 bits (54), Expect = 5.9
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 19 SLNRIKFLVLDEADRLLSGIFDEQMRTI 46
+ R K ++DE L F+ ++T+
Sbjct: 112 ARGRFKVYLIDEVHMLSRHSFNALLKTL 139
>d1ci4a_ a.60.5.1 (A:) Barrier-to-autointegration factor, BAF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 23.9 bits (52), Expect = 6.9
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 24 KFLVLDEADRLLSGIFDEQMRTIFGAVPKQKQ 55
+FLVL + + L F E ++ GA KQ +
Sbjct: 48 QFLVLKKDEDL----FREWLKDTCGANAKQSR 75
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 24.1 bits (51), Expect = 9.5
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 145 TVEELDQYYVLCP-YDVKDGYLVETVRLYREKSPRGAIVIFTDTCR 189
T+E + Q++V + K L LY + A++ +
Sbjct: 4 TLEGIKQFFVAVEREEWKFDTL---CDLYDTLTITQAVIFCNTKRK 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.383
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 644,277
Number of extensions: 26968
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 25
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.8 bits)