BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9741
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P0C|A Chain A, Nischarin Px-Domain
pdb|3P0C|B Chain B, Nischarin Px-Domain
Length = 130
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 64/107 (59%)
Query: 40 INTHITSYEIKDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKV 99
+ + E+ D +Y I V G W++ HRYSDF +L++KLV + ++K+LLPPKK+
Sbjct: 23 MEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKLVAERKIDKNLLPPKKI 82
Query: 100 LRNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLVKYDIN 146
+ + +EKR+ DLE+YLQ ++ PR L FLH Y+IN
Sbjct: 83 IGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFYEIN 129
>pdb|1XTN|A Chain A, Crystal Structure Of Cisk-Px Domain With Sulfates
pdb|1XTN|B Chain B, Crystal Structure Of Cisk-Px Domain With Sulfates
Length = 120
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 48 EIKDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVLR-NLDPT 106
E K + +YK+ V VG W + RY++F +L + L K +P K++ N DP
Sbjct: 20 EKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPD 79
Query: 107 FLEKRKTDLEIYLQNVVNFLE 127
F+++R+ L ++QN+V + E
Sbjct: 80 FIKQRRAGLNEFIQNLVRYPE 100
>pdb|1XTE|A Chain A, Crystal Structure Of Cisk-Px Domain
Length = 154
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 48 EIKDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVLR-NLDPT 106
E K + +YK+ V VG W + RY++F +L + L K +P K++ N DP
Sbjct: 20 EKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPD 79
Query: 107 FLEKRKTDLEIYLQNVVNFLE 127
F+++R+ L ++QN+V + E
Sbjct: 80 FIKQRRAGLNEFIQNLVRYPE 100
>pdb|2I4K|A Chain A, Solution Structure Of The Px Domain Of Sorting Nexin 1
Length = 128
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 24/116 (20%)
Query: 27 KFIMACLYSNNSKINTHITSYEIKDKIALYKITVQVG-----EVCWSLSHRYSDFVELND 81
+F + ++ KI + +Y YK+T Q +++ R+SDF+ L +
Sbjct: 1 QFDLTVGITDPEKIGDGMNAY------VAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYE 54
Query: 82 KLVKDHSLNKDLL--PPKKVLRNL-----------DPTFLEKRKTDLEIYLQNVVN 124
KL + HS N ++ PP+K L + FLEKR+ LE YLQ +VN
Sbjct: 55 KLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVN 110
>pdb|4AZ9|A Chain A, Crystal Structure Of Phox Homology Domain Of Human Sorting
Nexin 24
pdb|4AZ9|B Chain B, Crystal Structure Of Phox Homology Domain Of Human Sorting
Nexin 24
Length = 129
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 54 ALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVLRNLDPTFLEKRKT 113
++KI V + + RYS+F L+ KL K + +P K V RN P LE+R+
Sbjct: 42 TVFKIEVLMNGRKHFVEKRYSEFHALHKKLKK--CIKTPEIPSKHV-RNWVPKVLEQRRQ 98
Query: 114 DLEIYLQNVVNFLE-KSLPRCLIDFLHL 140
LE YLQ V+ LE + LP+ +DFL++
Sbjct: 99 GLETYLQAVI--LENEELPKLFLDFLNV 124
>pdb|2CSK|A Chain A, Solution Structure Of Px Domain From Human Snx12
Length = 146
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 42 THITSYEIKDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVLR 101
T+YE++ + L ++ E C + RYSDF L ++L +D + LP K + R
Sbjct: 26 ARFTTYEVRMRTNL--PIFKLKESC--VRRRYSDFEWLKNELERDSKIVVPPLPGKALKR 81
Query: 102 NL---------DPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLVKYDIN 146
L + +F+E+R+ LE ++ + RCL FL D N
Sbjct: 82 QLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRN 135
>pdb|2V14|A Chain A, Kinesin 16b Phox-Homology Domain (Kif16b)
Length = 134
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 50 KDKIALYKITVQVGEVCWSLSHRYSDFVELNDKL-VKDHSLNKDLLPPKKVLRNLDPTFL 108
KD +++ + V + W++ RYS F E + L +K L PPKK+ N D +
Sbjct: 20 KDAHFEFEVKITVLDETWTVFRRYSRFREXHKTLKLKYAELAALEFPPKKLFGNKDERVI 79
Query: 109 EKRKTDLEIYLQN 121
+R++ LE YL++
Sbjct: 80 AERRSHLEKYLRD 92
>pdb|2ETT|A Chain A, Solution Structure Of Human Sorting Nexin 22 Px Domain
Length = 128
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 68 SLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVLRNLDPTFLEKRKTDLEIYLQNVVNFLE 127
++ RYS+F L+ ++ K + + D P K L N LE+R+ LE Y+Q ++ +L
Sbjct: 47 TVPRRYSEFHALHKRIKKLYKV-PDF--PSKRLPNWRTRGLEQRRQGLEAYIQGIL-YLN 102
Query: 128 KSLPRCLIDFLHLVKYDIN 146
+ +P+ L++FL L + +
Sbjct: 103 QEVPKELLEFLRLRHFPTD 121
>pdb|3FOG|A Chain A, Crystal Structure Of The Px Domain Of Sorting Nexin-17
(Snx17)
Length = 115
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 72 RYSDFVELNDKLVKDHSLNK-DLLPPKKVLRNLDPTFLEKRKTDLEIYLQNV 122
RYS + L+++L K++ N PPKK+ +L P +E+R+ LE Y+Q V
Sbjct: 36 RYSQLLGLHEQLRKEYGANVLPAFPPKKLF-SLTPAEVEQRREQLEKYMQAV 86
>pdb|3LUI|A Chain A, Crystal Structure Of The Snx17 Px Domain With Bound
Sulphate
pdb|3LUI|B Chain B, Crystal Structure Of The Snx17 Px Domain With Bound
Sulphate
pdb|3LUI|C Chain C, Crystal Structure Of The Snx17 Px Domain With Bound
Sulphate
Length = 115
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 72 RYSDFVELNDKLVKDHSLNK-DLLPPKKVLRNLDPTFLEKRKTDLEIYLQNV 122
RYS + L+++L K++ N PPKK+ +L P +E+R+ LE Y+Q V
Sbjct: 39 RYSQLLGLHEQLRKEYGANVLPAFPPKKLF-SLTPAEVEQRREQLEKYMQAV 89
>pdb|3S9X|A Chain A, High Resolution Crystal Structure Of Asch Domain From
Lactobacillus Crispatus Jv V101
Length = 159
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 118 YLQNVVNFLEKSLPRCLIDFLHLVKYDINILLQDFASFCFNEGDKYLSMGNSTH 171
+LQ V N+ K P C+I+ + K N + +DFA+ EGDK L+ H
Sbjct: 78 HLQVVTNWDGK--PICIIEITSVSKCQYNQVSEDFAA-SEGEGDKSLAWWQEAH 128
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 58 ITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKV---LRNLDPTFLEKRK 112
IT+++ C +++ R DF + DK+ ++D++P K + LD FL+ K
Sbjct: 86 ITIEINPDCAAITQRMVDFAGMKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWK 143
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 58 ITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKV---LRNLDPTFLEKRK 112
IT+++ C +++ R DF + DK+ ++D++P K + LD FL+ K
Sbjct: 89 ITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWK 146
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 58 ITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKV---LRNLDPTFLEKRK 112
IT+++ C +++ R DF + DK+ ++D++P K + LD FL+ K
Sbjct: 86 ITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWK 143
>pdb|3IS1|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In C2 Form At 2.45 Angstrom
Resolution
Length = 446
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 18/89 (20%)
Query: 116 EIYLQNVV-NFLEKSLPRCLIDFLHLVKYDINILLQDFASF--------CFNEGDKYLSM 166
E Y QNV+ N+ +++P V DIN L +DFA F FN G K
Sbjct: 160 EDYTQNVIFNYGNRTVP---------VISDINYLTKDFAEFTTYINQNRAFNTGSKVRLS 210
Query: 167 GNSTHAFNPLQAQLLDSLDRALLTYKYTP 195
G +P + ++ L+ + ++P
Sbjct: 211 GQGFKFTSPDEIEVYKVLNNSQFRDSFSP 239
>pdb|3IRP|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus At 1.50 Angstrom Resolution
pdb|3IRZ|A Chain A, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In P212121 Form
pdb|3IS0|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In The Presence Of
Cholesterol
Length = 429
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 18/89 (20%)
Query: 116 EIYLQNVV-NFLEKSLPRCLIDFLHLVKYDINILLQDFASF--------CFNEGDKYLSM 166
E Y QNV+ N+ +++P V DIN L +DFA F FN G K
Sbjct: 143 EDYTQNVIFNYGNRTVP---------VISDINYLTKDFAEFTTYINQNRAFNTGSKVRLS 193
Query: 167 GNSTHAFNPLQAQLLDSLDRALLTYKYTP 195
G +P + ++ L+ + ++P
Sbjct: 194 GQGFKFTSPDEIEVYKVLNNSQFRDSFSP 222
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 21/97 (21%)
Query: 88 SLNKDLLPPKKVLRNLDPTFLEKRKTDL----EIYLQNVVNFLEKSLPRCLIDF------ 137
S+ K+ + PK+ L +++ FLE++K D I L+N+ + EK C+ +
Sbjct: 17 SIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLD 76
Query: 138 ---LHLVKYDINILL--------QDFASFCFNEGDKY 163
+HL+ + I L ++F S E +KY
Sbjct: 77 WGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKY 113
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 21/97 (21%)
Query: 88 SLNKDLLPPKKVLRNLDPTFLEKRKTDL----EIYLQNVVNFLEKSLPRCLIDF------ 137
S+ K+ + PK+ L +++ FLE++K D I L+N+ + EK C+ +
Sbjct: 16 SIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLD 75
Query: 138 ---LHLVKYDINILL--------QDFASFCFNEGDKY 163
+HL+ + I L ++F S E +KY
Sbjct: 76 WGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKY 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,890,094
Number of Sequences: 62578
Number of extensions: 235029
Number of successful extensions: 459
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 24
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)