Query psy9741
Match_columns 199
No_of_seqs 212 out of 1199
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 18:22:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1259|consensus 100.0 4.7E-32 1E-36 233.2 10.6 156 30-186 1-159 (490)
2 cd06875 PX_IRAS The phosphoino 100.0 2.4E-29 5.3E-34 190.6 13.5 115 38-152 2-116 (116)
3 cd07276 PX_SNX16 The phosphoin 99.9 7.4E-26 1.6E-30 169.9 12.1 104 38-141 2-110 (110)
4 cd06877 PX_SNX14 The phosphoin 99.9 1.3E-25 2.8E-30 170.9 12.7 103 39-141 2-119 (119)
5 cd06897 PX_SNARE The phosphoin 99.9 1.4E-25 3.1E-30 167.3 12.4 102 40-141 1-108 (108)
6 cd06870 PX_CISK The phosphoino 99.9 1.4E-25 3.1E-30 168.1 12.4 101 41-141 4-109 (109)
7 cd06872 PX_SNX19_like_plant Th 99.9 3.9E-25 8.4E-30 165.3 12.2 99 40-139 1-105 (107)
8 cd06878 PX_SNX25 The phosphoin 99.9 5E-25 1.1E-29 169.4 12.6 108 33-140 2-126 (127)
9 cd07280 PX_YPT35 The phosphoin 99.9 1.6E-24 3.5E-29 164.9 12.2 101 40-140 3-120 (120)
10 cd06880 PX_SNX22 The phosphoin 99.9 3.1E-24 6.7E-29 161.2 13.3 100 40-144 1-105 (110)
11 cd06871 PX_MONaKA The phosphoi 99.9 2.8E-24 6E-29 163.8 12.4 109 36-146 4-115 (120)
12 cd06861 PX_Vps5p The phosphoin 99.9 2.7E-24 5.9E-29 161.9 12.1 101 40-140 1-111 (112)
13 cd06881 PX_SNX15_like The phos 99.9 4E-24 8.7E-29 162.2 12.0 101 40-140 3-116 (117)
14 cd06873 PX_SNX13 The phosphoin 99.9 6E-24 1.3E-28 161.9 12.9 104 38-141 3-120 (120)
15 cd07301 PX_SNX21 The phosphoin 99.9 4.6E-24 1E-28 160.8 12.0 101 40-140 1-111 (112)
16 cd06882 PX_p40phox The phospho 99.9 6E-24 1.3E-28 162.6 12.4 107 38-145 2-122 (123)
17 cd07287 PX_RPK118_like The pho 99.9 1E-23 2.3E-28 160.1 11.9 99 42-140 5-117 (118)
18 cd07300 PX_SNX20 The phosphoin 99.9 1.5E-23 3.2E-28 158.4 12.4 100 42-141 3-112 (114)
19 cd07279 PX_SNX20_21_like The p 99.9 1.5E-23 3.3E-28 157.7 12.3 100 41-140 2-111 (112)
20 cd06868 PX_HS1BP3 The phosphoi 99.9 1.4E-23 2.9E-28 160.0 11.8 100 40-141 2-120 (120)
21 cd07282 PX_SNX2 The phosphoino 99.9 1.6E-23 3.5E-28 160.5 11.5 101 40-140 1-123 (124)
22 cd06898 PX_SNX10 The phosphoin 99.9 1.9E-23 4.1E-28 157.6 11.6 99 42-140 2-112 (113)
23 cd07293 PX_SNX3 The phosphoino 99.9 2.6E-23 5.6E-28 159.1 12.3 102 40-141 2-121 (123)
24 cd07288 PX_SNX15 The phosphoin 99.9 2.4E-23 5.2E-28 158.2 11.2 100 41-140 4-117 (118)
25 cd07295 PX_Grd19 The phosphoin 99.9 5.8E-23 1.3E-27 155.7 12.7 103 40-142 2-115 (116)
26 cd06894 PX_SNX3_like The phosp 99.9 4E-23 8.8E-28 158.0 11.6 102 40-141 2-121 (123)
27 cd07286 PX_SNX18 The phosphoin 99.9 5.6E-23 1.2E-27 157.7 12.0 101 41-143 2-109 (127)
28 cd06865 PX_SNX_like The phosph 99.9 4.6E-23 1E-27 157.0 11.4 99 42-140 2-119 (120)
29 cd07281 PX_SNX1 The phosphoino 99.9 4.8E-23 1E-27 157.7 11.5 101 40-140 1-123 (124)
30 cd07294 PX_SNX12 The phosphoin 99.9 8.1E-23 1.8E-27 158.0 12.8 110 38-147 2-129 (132)
31 cd07277 PX_RUN The phosphoinos 99.9 7.2E-23 1.6E-27 155.5 12.1 99 40-139 1-104 (118)
32 cd06860 PX_SNX7_30_like The ph 99.9 6.5E-23 1.4E-27 155.3 11.7 101 40-140 1-115 (116)
33 cd06867 PX_SNX41_42 The phosph 99.9 6.3E-23 1.4E-27 154.3 10.9 96 42-141 2-112 (112)
34 cd06859 PX_SNX1_2_like The pho 99.9 9.3E-23 2E-27 153.4 11.2 101 40-140 1-113 (114)
35 cd06866 PX_SNX8_Mvp1p_like The 99.9 8.1E-23 1.8E-27 152.3 10.7 87 52-140 17-104 (105)
36 cd06862 PX_SNX9_18_like The ph 99.9 1.3E-22 2.8E-27 155.6 11.6 100 41-142 2-108 (125)
37 cd07285 PX_SNX9 The phosphoino 99.9 1.1E-22 2.4E-27 155.7 10.8 101 41-143 2-110 (126)
38 cd06886 PX_SNX27 The phosphoin 99.9 2.5E-22 5.4E-27 149.9 11.4 97 39-139 3-104 (106)
39 cd06863 PX_Atg24p The phosphoi 99.9 3.2E-22 7E-27 151.7 12.0 101 40-140 1-117 (118)
40 cd06864 PX_SNX4 The phosphoino 99.9 2.6E-22 5.7E-27 154.7 11.0 100 41-140 2-128 (129)
41 cd07283 PX_SNX30 The phosphoin 99.9 4.4E-22 9.4E-27 150.9 11.7 101 40-140 1-115 (116)
42 cd06876 PX_MDM1p The phosphoin 99.9 6.1E-22 1.3E-26 153.3 12.3 101 39-139 19-132 (133)
43 cd06883 PX_PI3K_C2 The phospho 99.9 1.2E-21 2.5E-26 147.0 11.9 100 41-140 1-108 (109)
44 cd07284 PX_SNX7 The phosphoino 99.9 1.3E-21 2.8E-26 148.3 11.6 101 40-140 1-115 (116)
45 cd06879 PX_UP1_plant The phosp 99.9 1.6E-21 3.6E-26 150.9 12.0 100 42-141 31-138 (138)
46 cd06874 PX_KIF16B_SNX23 The ph 99.9 3.4E-21 7.4E-26 148.1 12.4 95 40-134 1-101 (127)
47 cd06885 PX_SNX17_31 The phosph 99.9 1.3E-21 2.9E-26 145.5 9.7 96 41-140 1-102 (104)
48 cd06093 PX_domain The Phox Hom 99.9 9E-21 1.9E-25 138.4 12.3 99 41-139 1-105 (106)
49 cd06893 PX_SNX19 The phosphoin 99.9 3.7E-21 8E-26 148.8 10.5 90 52-141 20-132 (132)
50 cd06884 PX_PI3K_C2_68D The pho 99.9 1.2E-20 2.5E-25 142.0 12.0 101 40-140 2-110 (111)
51 cd06887 PX_p47phox The phospho 99.8 6.1E-20 1.3E-24 139.3 12.7 100 40-141 2-116 (118)
52 cd07289 PX_PI3K_C2_alpha The p 99.8 4.4E-20 9.5E-25 138.0 11.5 100 41-140 1-108 (109)
53 cd06869 PX_UP2_fungi The phosp 99.8 6.5E-20 1.4E-24 139.5 11.7 83 52-140 32-118 (119)
54 cd06895 PX_PLD The phosphoinos 99.8 5.9E-20 1.3E-24 143.3 11.3 103 38-141 2-140 (140)
55 cd06888 PX_FISH The phosphoino 99.8 1.1E-19 2.4E-24 138.2 12.4 101 40-140 2-118 (119)
56 smart00312 PX PhoX homologous 99.8 1.2E-19 2.7E-24 133.3 10.0 88 52-139 11-105 (105)
57 PF00787 PX: PX domain; Inter 99.8 4.4E-19 9.6E-24 130.8 12.1 102 39-140 3-112 (113)
58 cd07290 PX_PI3K_C2_beta The ph 99.8 4.4E-19 9.5E-24 132.7 11.6 99 42-140 2-108 (109)
59 cd06890 PX_Bem1p The phosphoin 99.8 5.2E-19 1.1E-23 133.2 12.1 99 41-140 2-111 (112)
60 cd07296 PX_PLD1 The phosphoino 99.8 1E-18 2.3E-23 134.8 11.5 103 38-141 2-135 (135)
61 cd06891 PX_Vps17p The phosphoi 99.8 1.1E-18 2.4E-23 135.8 11.4 105 36-140 26-139 (140)
62 KOG2527|consensus 99.8 9.4E-19 2E-23 133.2 5.7 110 37-146 15-135 (144)
63 cd06892 PX_SNX5_like The phosp 99.7 2.1E-17 4.6E-22 128.4 9.5 102 39-140 2-140 (141)
64 cd07291 PX_SNX5 The phosphoino 99.7 3.2E-17 6.8E-22 126.5 8.8 103 39-141 2-141 (141)
65 cd07292 PX_SNX6 The phosphoino 99.7 5.1E-17 1.1E-21 125.2 9.6 103 39-141 2-141 (141)
66 cd06889 PX_NoxO1 The phosphoin 99.7 7.6E-16 1.6E-20 117.1 12.4 104 37-140 3-120 (121)
67 cd07297 PX_PLD2 The phosphoino 99.5 4.2E-13 9.1E-18 102.1 11.1 101 38-141 2-130 (130)
68 cd06896 PX_PI3K_C2_gamma The p 99.5 3.2E-13 6.9E-18 98.5 8.9 95 42-139 2-99 (101)
69 KOG2273|consensus 99.4 6.1E-13 1.3E-17 122.9 11.5 104 39-142 109-228 (503)
70 KOG2528|consensus 99.4 1.3E-12 2.9E-17 116.6 7.7 107 35-143 181-294 (490)
71 COG5391 Phox homology (PX) dom 98.9 2.8E-09 6E-14 99.0 7.9 79 52-130 150-242 (524)
72 KOG3784|consensus 98.8 1.1E-08 2.4E-13 90.8 7.2 86 52-141 16-102 (407)
73 KOG4773|consensus 98.6 9.2E-08 2E-12 83.7 7.1 146 42-191 24-184 (386)
74 KOG2101|consensus 98.6 1.4E-07 2.9E-12 84.0 8.0 85 51-135 133-232 (362)
75 KOG0905|consensus 98.6 1.2E-07 2.7E-12 93.2 8.0 110 33-142 1369-1486(1639)
76 cd07298 PX_RICS The phosphoino 98.1 3.7E-05 8.1E-10 57.4 9.3 83 52-139 26-114 (115)
77 cd07278 PX_RICS_like The phosp 97.9 0.00015 3.3E-09 53.9 9.7 100 37-140 4-114 (114)
78 cd07299 PX_TCGAP The phosphoin 97.8 0.00016 3.6E-09 53.6 8.2 85 51-139 23-112 (113)
79 PLN02866 phospholipase D 95.1 0.11 2.3E-06 52.3 8.6 107 38-145 14-175 (1068)
80 KOG1660|consensus 92.6 0.23 5E-06 44.2 5.1 103 39-141 25-163 (399)
81 KOG1329|consensus 73.4 4.1 8.8E-05 40.6 3.9 86 53-144 66-167 (887)
82 PF14980 TIP39: TIP39 peptide 42.7 26 0.00057 22.3 2.3 16 109-124 33-48 (51)
83 PF09457 RBD-FIP: FIP domain ; 29.5 61 0.0013 20.6 2.5 18 109-126 20-37 (48)
84 PF09425 CCT_2: Divergent CCT 25.4 57 0.0012 18.3 1.6 12 110-121 3-14 (27)
85 PF07929 PRiA4_ORF3: Plasmid p 22.9 1.4E+02 0.0029 23.6 4.0 37 54-90 3-44 (179)
No 1
>KOG1259|consensus
Probab=99.97 E-value=4.7e-32 Score=233.22 Aligned_cols=156 Identities=38% Similarity=0.690 Sum_probs=145.1
Q ss_pred hhhhccCCCceEEEEcce---EEeCCeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCCCCCCCCCcccCCCCHH
Q psy9741 30 MACLYSNNSKINTHITSY---EIKDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVLRNLDPT 106 (199)
Q Consensus 30 m~~~~~~~~~~~V~I~~~---~~~~~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~~p~LP~K~~~~~~~~~ 106 (199)
|+||+.+...-.++++.+ +.+++||+|.|.|+.+...|.|.|||+||..||++|+....+.+-.||||+++|++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~y~i~v~~g~~ew~v~~ry~df~~lheklv~e~~i~k~llppkk~ig~~~~s 80 (490)
T KOG1259|consen 1 MACYYRQHADTTVTVPKFSNESSSGGVTYYDIKVRVGKVEWLVERRYRDFANLHEKLVGEISISKKLLPPKKLVGNKQPS 80 (490)
T ss_pred CCcccccccCccccccccccccccCceEEEEEEEEecceeeeehhhhhHHHHHHHHhhhhheeccccCCchhhcCCCChh
Confidence 678988888777766655 44468999999999999999999999999999999999988888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCcHHHhcccCCCCcchhHHHHhhhhhhhccCcchhccCCcceeeChHHHhhhHHhhh
Q psy9741 107 FLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLVKYDINILLQDFASFCFNEGDKYLSMGNSTHAFNPLQAQLLDSLDR 186 (199)
Q Consensus 107 ~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~~~~~~~~~~~la~~~~~~gd~~l~~~~~~~~~~plql~~it~~~~ 186 (199)
++|+|+++||.|||.++....-..+..+.+||+++.|+++++++++|+.+|++||.++.++ +.|.+.|+|+|+|||+--
T Consensus 81 ~~e~r~~~leiylq~ll~~f~~~~pr~la~fl~f~~y~i~~~~~~la~~~~e~g~~ll~~~-~~~~~~~l~~yaise~l~ 159 (490)
T KOG1259|consen 81 FLEQRREQLEIYLQELLIYFRTELPRALAEFLDFNKYDIIYLLQDLAKLFNESGDALLSSK-KEYNLSALEVYAISERLS 159 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHHhccC-ceecccchhhhhHHHHhc
Confidence 9999999999999999998888889999999999999999999999999999999999999 999999999999999853
No 2
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.96 E-value=2.4e-29 Score=190.60 Aligned_cols=115 Identities=48% Similarity=0.852 Sum_probs=109.2
Q ss_pred CceEEEEcceEEeCCeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCCCCCCCCCcccCCCCHHHHHHHHHHHHH
Q psy9741 38 SKINTHITSYEIKDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVLRNLDPTFLEKRKTDLEI 117 (199)
Q Consensus 38 ~~~~V~I~~~~~~~~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~~p~LP~K~~~~~~~~~~ie~Rr~~Le~ 117 (199)
....|+|++++..++|++|.|+|..++..|.|.||||||.+||++|++.++...++||+|+++|+.++++|++||.+||.
T Consensus 2 ~~~~v~I~~~~~~~~~~~Y~I~V~~~~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~P~Kk~~~~~~~~~ie~Rr~~Le~ 81 (116)
T cd06875 2 PETKIRIPSAETVEGYTVYIIEVKVGSVEWTVKHRYSDFAELHDKLVAEHKVDKDLLPPKKLIGNKSPSFVEKRRKELEI 81 (116)
T ss_pred CCEEEEECCEEEECCEEEEEEEEEECCeEEEEEecHHHHHHHHHHHHHHcCcccCcCCCccccCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999777789999999999999999999999999
Q ss_pred HHHHHHhcccccCcHHHhcccCCCCcchhHHHHhh
Q psy9741 118 YLQNVVNFLEKSLPRCLIDFLHLVKYDINILLQDF 152 (199)
Q Consensus 118 yLq~ll~~~~l~~~~~l~~FL~~~~~~~~~~~~~l 152 (199)
||+.|++++.+..++++.+||+++.||+.++++.+
T Consensus 82 yL~~ll~~~~~~~s~~l~~FL~~~~~~~~~~~~~~ 116 (116)
T cd06875 82 YLQTLLSFFQKTMPRELAHFLDFHKYEIIGLTQNL 116 (116)
T ss_pred HHHHHHhhhcccCCHHHHHHhCCCceeEeeehhcC
Confidence 99999999999999999999999999999988753
No 3
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=99.93 E-value=7.4e-26 Score=169.86 Aligned_cols=104 Identities=33% Similarity=0.578 Sum_probs=95.9
Q ss_pred CceEEEEcceEEeC---CeEEEEEEEEEC-CeEEEEEecchhHHHHHHHHHhhcCCCCCCCCCCcccC-CCCHHHHHHHH
Q psy9741 38 SKINTHITSYEIKD---KIALYKITVQVG-EVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVLR-NLDPTFLEKRK 112 (199)
Q Consensus 38 ~~~~V~I~~~~~~~---~~~vY~I~V~~~-~~~w~V~RRYSeF~~Lh~~L~~~~~~~~p~LP~K~~~~-~~~~~~ie~Rr 112 (199)
.+++|.|.+++.++ +||+|.|+|..+ +..|.|.||||||.+||++|++.++...|+||+|++++ +.++++|++|+
T Consensus 2 ~~~~~~i~~~~~~~~~~~~~vY~I~v~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~~lP~K~~~~~~~~~~fie~Rr 81 (110)
T cd07276 2 RPIRPPILGYEVMEERARFTVYKIRVENKVGDSWFVFRRYTDFVRLNDKLKQMFPGFRLSLPPKRWFKDNFDPDFLEERQ 81 (110)
T ss_pred CCccceeeeEEEeecCCCeEEEEEEEEECCCCEEEEEEehHHHHHHHHHHHHHCCCCCCCCCCcceecccCCHHHHHHHH
Confidence 35689999999885 499999999986 58999999999999999999999988789999999998 48999999999
Q ss_pred HHHHHHHHHHHhcccccCcHHHhcccCCC
Q psy9741 113 TDLEIYLQNVVNFLEKSLPRCLIDFLHLV 141 (199)
Q Consensus 113 ~~Le~yLq~ll~~~~l~~~~~l~~FL~~~ 141 (199)
.+||.||+.|++++.+..++.+++||.++
T Consensus 82 ~~Lq~fL~~ll~~~~l~~s~~~~~FL~~~ 110 (110)
T cd07276 82 LGLQAFVNNIMAHKDIAKCKLVREFFCLD 110 (110)
T ss_pred HHHHHHHHHHhcCHhhhcChHHHHHhccC
Confidence 99999999999999999999999999864
No 4
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=99.93 E-value=1.3e-25 Score=170.93 Aligned_cols=103 Identities=26% Similarity=0.400 Sum_probs=93.8
Q ss_pred ceEEEEcceEEe------CCeEEEEEEEEE--------CCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCC
Q psy9741 39 KINTHITSYEIK------DKIALYKITVQV--------GEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNL 103 (199)
Q Consensus 39 ~~~V~I~~~~~~------~~~~vY~I~V~~--------~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~ 103 (199)
.+.|+|++.+.. +.|++|.|+|+. +...|.|.||||||.+||.+|++.++.. .++||+|+++|++
T Consensus 2 ~~~i~I~~~~~~~~~~~~~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~~~~ 81 (119)
T cd06877 2 AWRVSIPYVEMRRDPSNGERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIFGPK 81 (119)
T ss_pred cceEEeeeEEEeecCCCCcEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHHHCCCCCCCCCcCCcccCCC
Confidence 467999998776 349999999994 2579999999999999999999998865 6899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCCC
Q psy9741 104 DPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLV 141 (199)
Q Consensus 104 ~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~ 141 (199)
++++|++||.+||.||+.|++++.++.++.+.+||+++
T Consensus 82 ~~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~~~FL~~~ 119 (119)
T cd06877 82 SYEFLESKREIFEEFLQKLLQKPELRGSELLYDFLSPN 119 (119)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcccccCHHHHHhCCCC
Confidence 99999999999999999999999999999999999864
No 5
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=99.93 E-value=1.4e-25 Score=167.26 Aligned_cols=102 Identities=25% Similarity=0.469 Sum_probs=95.9
Q ss_pred eEEEEcceEEe-CCeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccC--CCCHHHHHHHHHHH
Q psy9741 40 INTHITSYEIK-DKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLR--NLDPTFLEKRKTDL 115 (199)
Q Consensus 40 ~~V~I~~~~~~-~~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~--~~~~~~ie~Rr~~L 115 (199)
++|+|++++.. ++|++|.|+|..++..|.|+||||||.+||++|.+.++.. .|+||+|++++ +.++++||+|+.+|
T Consensus 1 ~~v~ip~~~~~~~~~~~Y~I~v~~~~~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~~~ie~Rr~~L 80 (108)
T cd06897 1 LEISIPTTSVSPKPYTVYNIQVRLPLRSYTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWFLSTSSNPKLVEERRVGL 80 (108)
T ss_pred CeEEcCCeEEcCCCeEEEEEEEEcCCceEEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEecccCCCHHHHHHHHHHH
Confidence 37999999997 7899999999999999999999999999999999998876 58999999998 89999999999999
Q ss_pred HHHHHHHHhcc--cccCcHHHhcccCCC
Q psy9741 116 EIYLQNVVNFL--EKSLPRCLIDFLHLV 141 (199)
Q Consensus 116 e~yLq~ll~~~--~l~~~~~l~~FL~~~ 141 (199)
|.||+.|++++ .+..++.+++||++.
T Consensus 81 e~yL~~l~~~~~~~l~~s~~~~~FL~~~ 108 (108)
T cd06897 81 EAFLRALLNDEDSRWRNSPAVKEFLNLP 108 (108)
T ss_pred HHHHHHHHcCCccchhcCHHHHHHhCCC
Confidence 99999999999 999999999999863
No 6
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=99.93 E-value=1.4e-25 Score=168.08 Aligned_cols=101 Identities=26% Similarity=0.492 Sum_probs=92.0
Q ss_pred EEEEcceEEe----CCeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCCCCCCCCCcccC-CCCHHHHHHHHHHH
Q psy9741 41 NTHITSYEIK----DKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVLR-NLDPTFLEKRKTDL 115 (199)
Q Consensus 41 ~V~I~~~~~~----~~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~~p~LP~K~~~~-~~~~~~ie~Rr~~L 115 (199)
.|+|++.... .+|++|.|+|..++..|.|+||||||.+||++|++.++...++||+|+++| ++++++|++|+.+|
T Consensus 4 ~~~i~~~~~~~~~~~~~~~Y~I~v~~~~~~~~v~RRYseF~~L~~~L~~~~~~~~~~lP~K~~~~~~~~~~~ie~Rr~~L 83 (109)
T cd06870 4 SVSIPSSDEDREKKKRFTVYKVVVSVGRSSWFVFRRYAEFDKLYESLKKQFPASNLKIPGKRLFGNNFDPDFIKQRRAGL 83 (109)
T ss_pred ceeeccceeeccCCCCeEEEEEEEEECCeEEEEEeehHHHHHHHHHHHHHCcccCcCCCCCcccccCCCHHHHHHHHHHH
Confidence 4667765443 359999999999999999999999999999999999987777899999999 89999999999999
Q ss_pred HHHHHHHHhcccccCcHHHhcccCCC
Q psy9741 116 EIYLQNVVNFLEKSLPRCLIDFLHLV 141 (199)
Q Consensus 116 e~yLq~ll~~~~l~~~~~l~~FL~~~ 141 (199)
|.||+.|+++|.+..++.+.+||+++
T Consensus 84 e~fL~~ll~~p~l~~s~~~~~FL~~~ 109 (109)
T cd06870 84 DEFIQRLVSDPKLLNHPDVRAFLQMD 109 (109)
T ss_pred HHHHHHHhCCHhhhcChHHHHHhCcC
Confidence 99999999999999999999999863
No 7
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.93 E-value=3.9e-25 Score=165.35 Aligned_cols=99 Identities=25% Similarity=0.456 Sum_probs=89.7
Q ss_pred eEEEEcceEEeC----CeEEEEEEEEEC-CeEEEEEecchhHHHHHHHHHhhcCCCCCCCCCCccc-CCCCHHHHHHHHH
Q psy9741 40 INTHITSYEIKD----KIALYKITVQVG-EVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVL-RNLDPTFLEKRKT 113 (199)
Q Consensus 40 ~~V~I~~~~~~~----~~~vY~I~V~~~-~~~w~V~RRYSeF~~Lh~~L~~~~~~~~p~LP~K~~~-~~~~~~~ie~Rr~ 113 (199)
++|+|.+.+.++ .|++|.|.|..+ +..|.|.||||||.+||++|++. +...++||+|+++ |+.++++||+|+.
T Consensus 1 ~~~~v~~~~~~~~~~~~y~vY~I~v~~~~~~~w~v~RRYsdF~~L~~~L~~~-~~~~~~lP~K~~~~~~~~~~fie~Rr~ 79 (107)
T cd06872 1 LSCRVLGAEIVKSGSKSFAVYSVAVTDNENETWVVKRRFRNFETLHRRLKEV-PKYNLELPPKRFLSSSLDGAFIEERCK 79 (107)
T ss_pred CeeEEeeeEEEecCCccEEEEEEEEEECCCceEEEEehHHHHHHHHHHHHhc-cCCCCCCCCccccCCCCCHHHHHHHHH
Confidence 478899998884 399999999974 77999999999999999999984 4446789999998 5789999999999
Q ss_pred HHHHHHHHHHhcccccCcHHHhcccC
Q psy9741 114 DLEIYLQNVVNFLEKSLPRCLIDFLH 139 (199)
Q Consensus 114 ~Le~yLq~ll~~~~l~~~~~l~~FL~ 139 (199)
+||.||+.|+++|.++.++.+.+||.
T Consensus 80 ~Le~yL~~l~~~p~i~~s~~~~~FL~ 105 (107)
T cd06872 80 LLDKYLKDLLVIEKVAESHEVWSFLS 105 (107)
T ss_pred HHHHHHHHHhcChhhhcCHHHHHHhc
Confidence 99999999999999999999999996
No 8
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.93 E-value=5e-25 Score=169.43 Aligned_cols=108 Identities=30% Similarity=0.419 Sum_probs=96.3
Q ss_pred hccCCCceEEEEcceEEe--C--CeEEEEEEEEECC----------eEEEEEecchhHHHHHHHHHhhcCCC---CCCCC
Q psy9741 33 LYSNNSKINTHITSYEIK--D--KIALYKITVQVGE----------VCWSLSHRYSDFVELNDKLVKDHSLN---KDLLP 95 (199)
Q Consensus 33 ~~~~~~~~~V~I~~~~~~--~--~~~vY~I~V~~~~----------~~w~V~RRYSeF~~Lh~~L~~~~~~~---~p~LP 95 (199)
+.++.+.+.|.|++++.+ + .|++|.|.|+..+ ..|+|.||||||.+||++|++.++.. .+|+|
T Consensus 2 ~~~~~~~w~~~I~~~~~~~~~~~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP~p 81 (127)
T cd06878 2 WCEHLGKWRANIQSAEVTVEDDKEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKECSSWLKKVELPSL 81 (127)
T ss_pred hhHhCCcceEEEeeeEEEcCCCeEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHHHCCCccccCCCCC
Confidence 567788899999999854 2 3999999999642 46999999999999999999999864 45667
Q ss_pred CCcccCCCCHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 96 PKKVLRNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 96 ~K~~~~~~~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
+|+++++.++++||+||.+||.|||.|++++.++.++++.+||++
T Consensus 82 pKk~~~~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l~~FLsp 126 (127)
T cd06878 82 SKKWFKSIDKKFLDKSKNQLQKYLQFILEDETLCQSEALYSFLSP 126 (127)
T ss_pred CccccccCCHHHHHHHHHHHHHHHHHHhCChhhcCCHHHHHHcCC
Confidence 899999999999999999999999999999999999999999986
No 9
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=99.92 E-value=1.6e-24 Score=164.94 Aligned_cols=101 Identities=27% Similarity=0.411 Sum_probs=92.9
Q ss_pred eEEEEcceEEeC------CeEEEEEEEEEC---CeEEEEEecchhHHHHHHHHHhhcCCC----CCCCCCCcccC----C
Q psy9741 40 INTHITSYEIKD------KIALYKITVQVG---EVCWSLSHRYSDFVELNDKLVKDHSLN----KDLLPPKKVLR----N 102 (199)
Q Consensus 40 ~~V~I~~~~~~~------~~~vY~I~V~~~---~~~w~V~RRYSeF~~Lh~~L~~~~~~~----~p~LP~K~~~~----~ 102 (199)
-+|+|+++++++ +|++|.|+|.+. +..|.|+||||||.+||+.|++.++.. .|+||+|++++ +
T Consensus 3 ~~i~i~~~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~~~~~~~ 82 (120)
T cd07280 3 TDVNVGDYTIVGGDTGGGAYVVWKITIETKDLIGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWYDSRVN 82 (120)
T ss_pred eEEEcCCCeEECCCCCCCCEEEEEEEEEeCCCCCCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCccccccccc
Confidence 468999999983 399999999976 489999999999999999999999864 59999999999 8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 103 LDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 103 ~~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
.++++||+|+.+||.||+.|+++|.+..++.+.+||+.
T Consensus 83 ~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 120 (120)
T cd07280 83 LNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEFLLP 120 (120)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCHhhccChHHHHhhCC
Confidence 89999999999999999999999999999999999974
No 10
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=99.92 E-value=3.1e-24 Score=161.19 Aligned_cols=100 Identities=37% Similarity=0.638 Sum_probs=91.6
Q ss_pred eEEEEcceEEeC-----CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCCCCCCCCCcccCCCCHHHHHHHHHH
Q psy9741 40 INTHITSYEIKD-----KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVLRNLDPTFLEKRKTD 114 (199)
Q Consensus 40 ~~V~I~~~~~~~-----~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~~p~LP~K~~~~~~~~~~ie~Rr~~ 114 (199)
+.|+|++++..+ +|++|.|+|..++..|.|+||||||.+||++|++.++ .|+||+|++ ++.++++|++|+.+
T Consensus 1 ~~V~Ip~~~~~~~~~~~~y~~Y~I~v~~~~~~~~v~RRYseF~~Lh~~L~~~~~--~p~~P~K~~-~~~~~~~ie~Rr~~ 77 (110)
T cd06880 1 IEVSIPSYRLEVDESEKPYTVFTIEVLVNGRRHTVEKRYSEFHALHKKLKKSIK--TPDFPPKRV-RNWNPKVLEQRRQG 77 (110)
T ss_pred CEEEeCcEEEeeCCCCCCeEEEEEEEEECCeEEEEEccHHHHHHHHHHHHHHCC--CCCCCCCCc-cCCCHHHHHHHHHH
Confidence 478999988874 3999999999998999999999999999999999988 689999997 67899999999999
Q ss_pred HHHHHHHHHhcccccCcHHHhcccCCCCcc
Q psy9741 115 LEIYLQNVVNFLEKSLPRCLIDFLHLVKYD 144 (199)
Q Consensus 115 Le~yLq~ll~~~~l~~~~~l~~FL~~~~~~ 144 (199)
||.||+.|++++. .+..+.+||++..+.
T Consensus 78 Le~yL~~ll~~~~--~s~~l~~FL~~~~~~ 105 (110)
T cd06880 78 LEAYLQGLLKINE--LPKQLLDFLGVRHFP 105 (110)
T ss_pred HHHHHHHHHcCcc--ccHHHHHHhCCCCCC
Confidence 9999999999987 689999999998765
No 11
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.92 E-value=2.8e-24 Score=163.81 Aligned_cols=109 Identities=28% Similarity=0.408 Sum_probs=98.3
Q ss_pred CCCceEEEEcceEEeCCeEEEEEEEEEC---CeEEEEEecchhHHHHHHHHHhhcCCCCCCCCCCcccCCCCHHHHHHHH
Q psy9741 36 NNSKINTHITSYEIKDKIALYKITVQVG---EVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVLRNLDPTFLEKRK 112 (199)
Q Consensus 36 ~~~~~~V~I~~~~~~~~~~vY~I~V~~~---~~~w~V~RRYSeF~~Lh~~L~~~~~~~~p~LP~K~~~~~~~~~~ie~Rr 112 (199)
..-++++.|.+.+...+|++|.|+|+.+ +..|.|+||||||.+||++|+.. +.. ++||+|+++|+.++++|++|+
T Consensus 4 ~~~~~~~~i~~~~~~~~~t~Y~I~v~~~~~~~~~w~V~RRYsdF~~Lh~~L~~~-~~~-~plP~K~~~g~~~~~~ie~Rr 81 (120)
T cd06871 4 DTVPLTCVIEASQNIQSHTEYIIRVQRGPSPENSWQVIRRYNDFDLLNASLQIS-GIS-LPLPPKKLIGNMDREFIAERQ 81 (120)
T ss_pred CCceeEEEEecCCCccCcEEEEEEEEECCcCCceeEEEeeHHHHHHHHHHHHHc-CCC-CCCCCccccCCCCHHHHHHHH
Confidence 4567899999999999999999999974 56999999999999999999864 333 579999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCcHHHhcccCCCCcchh
Q psy9741 113 TDLEIYLQNVVNFLEKSLPRCLIDFLHLVKYDIN 146 (199)
Q Consensus 113 ~~Le~yLq~ll~~~~l~~~~~l~~FL~~~~~~~~ 146 (199)
.+||.||+.|+++|.+..++.+.+||+...++..
T Consensus 82 ~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~~~~~ 115 (120)
T cd06871 82 QGLQNYLNVILMNPILASCLPVKKFLDPNNYSAN 115 (120)
T ss_pred HHHHHHHHHHHcChhhccCHHHHHhcCcccCCcC
Confidence 9999999999999999999999999999888743
No 12
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=99.92 E-value=2.7e-24 Score=161.88 Aligned_cols=101 Identities=21% Similarity=0.271 Sum_probs=92.1
Q ss_pred eEEEEcceEEeC----CeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCCHHHHH
Q psy9741 40 INTHITSYEIKD----KIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLDPTFLE 109 (199)
Q Consensus 40 ~~V~I~~~~~~~----~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~~~~ie 109 (199)
+.|+|.++++++ +|++|.|.+++. ...|.|+||||||.+||++|...++.. .|++|+|+++|+++++++|
T Consensus 1 ~~i~V~dp~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~~~~~~~fie 80 (112)
T cd06861 1 FEITVGDPHKVGDLTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSVGRFDDNFVE 80 (112)
T ss_pred CEEEEcCcceecCCccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCcccccCCCHHHHH
Confidence 367888888873 599999999974 458999999999999999999998655 6999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 110 KRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 110 ~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
+||.+||.||+.|++||.++.++.+..||+.
T Consensus 81 ~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 111 (112)
T cd06861 81 QRRAALEKMLRKIANHPVLQKDPDFRLFLES 111 (112)
T ss_pred HHHHHHHHHHHHHHCCcccccCcHHHHhcCC
Confidence 9999999999999999999999999999985
No 13
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=99.91 E-value=4e-24 Score=162.20 Aligned_cols=101 Identities=23% Similarity=0.226 Sum_probs=90.8
Q ss_pred eEEEEcceEEe-CCeEEEEEEEEEC-------CeEEEEEecchhHHHHHHHHHhhcC-----CCCCCCCCCcccCCCCHH
Q psy9741 40 INTHITSYEIK-DKIALYKITVQVG-------EVCWSLSHRYSDFVELNDKLVKDHS-----LNKDLLPPKKVLRNLDPT 106 (199)
Q Consensus 40 ~~V~I~~~~~~-~~~~vY~I~V~~~-------~~~w~V~RRYSeF~~Lh~~L~~~~~-----~~~p~LP~K~~~~~~~~~ 106 (199)
.+++|++++.. ++||+|.|.+.+. ...|.|+||||||.+||++|++.++ ...|+||+|+++|+++++
T Consensus 3 ~~~~V~d~~~~~~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~~g~~~~~ 82 (117)
T cd06881 3 RSFTVTDTRRHKKGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKYFGRFDAA 82 (117)
T ss_pred EEEEecCcceecCceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCcccCCCCHH
Confidence 46889898887 5799999999852 2489999999999999999999874 235899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 107 FLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 107 ~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
+|++|+.+||.||+.|+++|.+..++.+++||+-
T Consensus 83 ~IeeRr~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 116 (117)
T cd06881 83 VIEERRQAILELLDFVGNHPALYQSSAFQQFFEE 116 (117)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhcc
Confidence 9999999999999999999999999999999973
No 14
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=99.91 E-value=6e-24 Score=161.89 Aligned_cols=104 Identities=35% Similarity=0.470 Sum_probs=93.4
Q ss_pred CceEEEEcceEEeC----CeEEEEEEEEE-----CCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCCHHH
Q psy9741 38 SKINTHITSYEIKD----KIALYKITVQV-----GEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLDPTF 107 (199)
Q Consensus 38 ~~~~V~I~~~~~~~----~~~vY~I~V~~-----~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~~~~ 107 (199)
-.++++|++++.++ .|++|.|.|.. +...|.|.||||||.+||++|++.++.. .|+||+|+++|+.++++
T Consensus 3 ~~~~~~i~~~~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~~~~~~~~ 82 (120)
T cd06873 3 FKLTAVIINTGIVKEHGKTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTFNNLDRAF 82 (120)
T ss_pred cEEEEEEeccEEEccCCceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHHHCcCCCCCCCCCCcccCCCCHHH
Confidence 35889999999985 39999999986 2468999999999999999999999865 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCc----HHHhcccCCC
Q psy9741 108 LEKRKTDLEIYLQNVVNFLEKSLP----RCLIDFLHLV 141 (199)
Q Consensus 108 ie~Rr~~Le~yLq~ll~~~~l~~~----~~l~~FL~~~ 141 (199)
|++|+.+||.||+.|++++.++.+ ..+.+||+++
T Consensus 83 ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~l~~FL~~~ 120 (120)
T cd06873 83 LEKRRKMLNQYLQSLLNPEVLDANPGLQEIVLDFLEPG 120 (120)
T ss_pred HHHHHHHHHHHHHHHhCCHhhccCHHHHHHHHHHcCCC
Confidence 999999999999999999999888 5788888763
No 15
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=99.91 E-value=4.6e-24 Score=160.75 Aligned_cols=101 Identities=24% Similarity=0.339 Sum_probs=91.1
Q ss_pred eEEEEcceEEeC----CeEEEEEEEEE----CCeEEEEEecchhHHHHHHHHHhhcCCCC--CCCCCCcccCCCCHHHHH
Q psy9741 40 INTHITSYEIKD----KIALYKITVQV----GEVCWSLSHRYSDFVELNDKLVKDHSLNK--DLLPPKKVLRNLDPTFLE 109 (199)
Q Consensus 40 ~~V~I~~~~~~~----~~~vY~I~V~~----~~~~w~V~RRYSeF~~Lh~~L~~~~~~~~--p~LP~K~~~~~~~~~~ie 109 (199)
+.|.|+++.+++ +|++|.|.|.. ++..|.|+||||||.+||+.|+..++... ++||+|++++++++++|+
T Consensus 1 ~~~~v~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~~~~~~~~ie 80 (112)
T cd07301 1 LLFEVTDANVVQDAHSKYVLYTIYVIQTGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLRKNFTAETIA 80 (112)
T ss_pred CEEEECCCeEeccCCcCEEEEEEEEEecCCCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCcccCCCCHHHHH
Confidence 357888888773 59999999974 35689999999999999999999998653 589999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 110 KRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 110 ~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
+||.+||.||+.|+++|.++.++.+++||.+
T Consensus 81 ~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~l 111 (112)
T cd07301 81 KRSRAFEQFLCHLHSLPELRASPAFLEFFYL 111 (112)
T ss_pred HHHHHHHHHHHHHhcCHHHhcChHHHHHhCC
Confidence 9999999999999999999999999999975
No 16
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=99.91 E-value=6e-24 Score=162.61 Aligned_cols=107 Identities=20% Similarity=0.264 Sum_probs=95.2
Q ss_pred CceEEEEcceEEeC---CeEEEEEEEEE-CCeEEEEEecchhHHHHHHHHHhhcCC---------CCCCCCCCcccCCCC
Q psy9741 38 SKINTHITSYEIKD---KIALYKITVQV-GEVCWSLSHRYSDFVELNDKLVKDHSL---------NKDLLPPKKVLRNLD 104 (199)
Q Consensus 38 ~~~~V~I~~~~~~~---~~~vY~I~V~~-~~~~w~V~RRYSeF~~Lh~~L~~~~~~---------~~p~LP~K~~~~~~~ 104 (199)
.+++++|.+.+... .|++|.|+|.. ++..|.|+||||||.+||++|++.++. .+|+||+|+++|+.+
T Consensus 2 ~~i~~~I~~~~~~~~~~~y~vY~I~v~~~~~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~~~~~~ 81 (123)
T cd06882 2 VAVSATIADIEEKRGFTNYYVFVIEVKTKGGSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIYVGRKA 81 (123)
T ss_pred CcEEEEEeeeeEEeCCCCEEEEEEEEEEcCCCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCeecCccH
Confidence 36889999998764 49999999986 467899999999999999999999985 368899999999875
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc-ccCcHHHhcccCCCCcch
Q psy9741 105 PTFLEKRKTDLEIYLQNVVNFLE-KSLPRCLIDFLHLVKYDI 145 (199)
Q Consensus 105 ~~~ie~Rr~~Le~yLq~ll~~~~-l~~~~~l~~FL~~~~~~~ 145 (199)
+++++|+.+|+.||+.|++.|. +..++.++.||.....|+
T Consensus 82 -~~~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~~~~d~ 122 (123)
T cd06882 82 -EIAERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQTESDS 122 (123)
T ss_pred -HHHHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCCCcccc
Confidence 9999999999999999999875 899999999999887764
No 17
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=99.91 E-value=1e-23 Score=160.11 Aligned_cols=99 Identities=24% Similarity=0.234 Sum_probs=88.3
Q ss_pred EEEcceEEeC-CeEEEEEEEEECC-------eEEEEEecchhHHHHHHHHHhhcCC------CCCCCCCCcccCCCCHHH
Q psy9741 42 THITSYEIKD-KIALYKITVQVGE-------VCWSLSHRYSDFVELNDKLVKDHSL------NKDLLPPKKVLRNLDPTF 107 (199)
Q Consensus 42 V~I~~~~~~~-~~~vY~I~V~~~~-------~~w~V~RRYSeF~~Lh~~L~~~~~~------~~p~LP~K~~~~~~~~~~ 107 (199)
.+|.+++... +||+|.|++++.. ..|.|+||||||.+||+.|...++. ..|++|+|+++|++++++
T Consensus 5 ~~V~dp~~~~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~g~~d~~f 84 (118)
T cd07287 5 YTVTDPRRHPKGYTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVFGRFDESV 84 (118)
T ss_pred EEecCCeEcCCCeEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCCCceeecCCCHHH
Confidence 5678887774 7999999988642 5899999999999999999998753 358899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 108 LEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 108 ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
||+||.+||.||+.+.++|.+..++++++||.-
T Consensus 85 Ie~RR~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 117 (118)
T cd07287 85 IEERRQCAEDLLQFSANIPALYNSSQLEDFFKG 117 (118)
T ss_pred HHHHHHHHHHHHHHHhcCccccCChHHHHHhcC
Confidence 999999999999999999999999999999973
No 18
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=99.91 E-value=1.5e-23 Score=158.44 Aligned_cols=100 Identities=28% Similarity=0.400 Sum_probs=89.5
Q ss_pred EEEcceEEeC----CeEEEEEEEE-EC---CeEEEEEecchhHHHHHHHHHhhcCCC--CCCCCCCcccCCCCHHHHHHH
Q psy9741 42 THITSYEIKD----KIALYKITVQ-VG---EVCWSLSHRYSDFVELNDKLVKDHSLN--KDLLPPKKVLRNLDPTFLEKR 111 (199)
Q Consensus 42 V~I~~~~~~~----~~~vY~I~V~-~~---~~~w~V~RRYSeF~~Lh~~L~~~~~~~--~p~LP~K~~~~~~~~~~ie~R 111 (199)
++|+++..++ +|++|.|.+. ++ ...|.|+||||||.+||+.|.+.++.. .++||+|+++|++++++|++|
T Consensus 3 ~~i~~~~~~~~~~~~yv~Y~i~~~~~g~~~~~~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~~~~~~~~ie~R 82 (114)
T cd07300 3 FEIPSARIIEQTISKHVVYQIIVIQTGSFDCNKVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLTGNFSEEIIAER 82 (114)
T ss_pred EEecCceeeccCCcceEEEEEEEEEecCccCceEEEEeccHhHHHHHHHHHHHccccCCCCCCCCCcccCCCCHHHHHHH
Confidence 6788877763 5999999874 43 569999999999999999999988643 578999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCcHHHhcccCCC
Q psy9741 112 KTDLEIYLQNVVNFLEKSLPRCLIDFLHLV 141 (199)
Q Consensus 112 r~~Le~yLq~ll~~~~l~~~~~l~~FL~~~ 141 (199)
|.+||.||+.|+++|.+..++.+++||...
T Consensus 83 r~~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 112 (114)
T cd07300 83 RVALRDYLTLLYSLRFVRRSQAFQDFLTHP 112 (114)
T ss_pred HHHHHHHHHHHhcCHhhhcChHHHHHhCCc
Confidence 999999999999999999999999999865
No 19
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=99.91 E-value=1.5e-23 Score=157.68 Aligned_cols=100 Identities=24% Similarity=0.376 Sum_probs=89.7
Q ss_pred EEEEcceEEeC----CeEEEEEEEEEC----CeEEEEEecchhHHHHHHHHHhhcCCC--CCCCCCCcccCCCCHHHHHH
Q psy9741 41 NTHITSYEIKD----KIALYKITVQVG----EVCWSLSHRYSDFVELNDKLVKDHSLN--KDLLPPKKVLRNLDPTFLEK 110 (199)
Q Consensus 41 ~V~I~~~~~~~----~~~vY~I~V~~~----~~~w~V~RRYSeF~~Lh~~L~~~~~~~--~p~LP~K~~~~~~~~~~ie~ 110 (199)
...|.++..++ +|++|.|+|... ...|.|+||||||.+||++|.+.++.. .|+||+|+++|++++++|++
T Consensus 2 ~~~i~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~~~~~~~~ie~ 81 (112)
T cd07279 2 KFEIVSARTVKEGEKKYVVYQLAVVQTGDPDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLMGNFSSELIAE 81 (112)
T ss_pred eEEeccCeEEcCCCeeEEEEEEEEEECCCCCCceEEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeecccCCHHHHHH
Confidence 45677777763 499999999864 467999999999999999999999865 47899999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 111 RKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 111 Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
|+.+||.||+.|+++|.+..++++.+||..
T Consensus 82 Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 111 (112)
T cd07279 82 RSRAFEQFLGHILSIPNLRDSKAFLDFLQG 111 (112)
T ss_pred HHHHHHHHHHHHhCCHhhhcChHHHHHhCC
Confidence 999999999999999999999999999974
No 20
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.91 E-value=1.4e-23 Score=159.99 Aligned_cols=100 Identities=21% Similarity=0.302 Sum_probs=89.5
Q ss_pred eEEEEcceEEeC-----CeEEEEEEEEECC-------------eEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCccc
Q psy9741 40 INTHITSYEIKD-----KIALYKITVQVGE-------------VCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVL 100 (199)
Q Consensus 40 ~~V~I~~~~~~~-----~~~vY~I~V~~~~-------------~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~ 100 (199)
++|+|+.++... +|++|.|.|.++. ..|.|+||||||.+||+.|.+.++.. .|+||+|+++
T Consensus 2 ~~v~vp~~~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 81 (120)
T cd06868 2 LDLTVPEYQEIRGKTSSGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSEKYPGTILPPLPRKALF 81 (120)
T ss_pred CceecCCceeecCCCCCCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHHHCCCCCCCCCCCCccc
Confidence 578899887774 4999999988642 37999999999999999999998765 7999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCCC
Q psy9741 101 RNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLV 141 (199)
Q Consensus 101 ~~~~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~ 141 (199)
+ +++++++||.+||.||+.|+++|.++.++++.+||.++
T Consensus 82 ~--~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 120 (120)
T cd06868 82 V--SESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGVK 120 (120)
T ss_pred C--CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcCC
Confidence 7 89999999999999999999999999999999999863
No 21
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=99.90 E-value=1.6e-23 Score=160.46 Aligned_cols=101 Identities=27% Similarity=0.352 Sum_probs=89.3
Q ss_pred eEEEEcceEEeC----CeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcC---CCCCCCCCCcccCC-----
Q psy9741 40 INTHITSYEIKD----KIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHS---LNKDLLPPKKVLRN----- 102 (199)
Q Consensus 40 ~~V~I~~~~~~~----~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~---~~~p~LP~K~~~~~----- 102 (199)
+.|+|.++++.. .|++|.|++++. ...|.|+||||||.+||+.|.+.++ ...|++|+|++++.
T Consensus 1 ~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~~ 80 (124)
T cd07282 1 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKV 80 (124)
T ss_pred CEEEEeCCeEecCCccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCcccccccccc
Confidence 468888888873 499999999863 4689999999999999999999875 34799999999763
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 103 -----LDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 103 -----~~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
++++|||+||.+||.||+.|++||.++.++.+..||+.
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07282 81 GKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLES 123 (124)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHhhcC
Confidence 48899999999999999999999999999999999984
No 22
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=99.90 E-value=1.9e-23 Score=157.61 Aligned_cols=99 Identities=24% Similarity=0.363 Sum_probs=87.8
Q ss_pred EEEcceEEeC-----CeEEEEEEEEECC-----eEEEEEecchhHHHHHHHHHhhcCC-CCCCCCCCcccCCCC-HHHHH
Q psy9741 42 THITSYEIKD-----KIALYKITVQVGE-----VCWSLSHRYSDFVELNDKLVKDHSL-NKDLLPPKKVLRNLD-PTFLE 109 (199)
Q Consensus 42 V~I~~~~~~~-----~~~vY~I~V~~~~-----~~w~V~RRYSeF~~Lh~~L~~~~~~-~~p~LP~K~~~~~~~-~~~ie 109 (199)
|.|.+.+... .||+|.|.+.++. ..|.|+||||||.+||++|.+.++. ..|+||+|+++|+++ ++|||
T Consensus 2 v~V~dP~~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~fie 81 (113)
T cd06898 2 VEVRDPRTHKEDDWGSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLPPKNLFGRFNNEGFIE 81 (113)
T ss_pred eEEeCCcEecCCCCCCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCCCCccccCCCCHHHHH
Confidence 5566665542 4999999998753 4679999999999999999999986 579999999999887 99999
Q ss_pred HHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 110 KRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 110 ~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
+||++||.||+.|+++|.+..++.+..||+.
T Consensus 82 ~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~~ 112 (113)
T cd06898 82 ERQQGLQDFLEKVLQTPLLLSDSRLHLFLQT 112 (113)
T ss_pred HHHHHHHHHHHHHHcChhhccChHHHHhccC
Confidence 9999999999999999999999999999974
No 23
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=99.90 E-value=2.6e-23 Score=159.09 Aligned_cols=102 Identities=26% Similarity=0.402 Sum_probs=91.9
Q ss_pred eEEEEcceEEeC----CeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcCCCCCCCCCCccc---------C
Q psy9741 40 INTHITSYEIKD----KIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVL---------R 101 (199)
Q Consensus 40 ~~V~I~~~~~~~----~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~~~~p~LP~K~~~---------~ 101 (199)
+.|.|.+++.+. .|++|.|.++++ ...|.|+||||||.+||+.|....+...|+||+|+++ |
T Consensus 2 ~~i~v~dP~~~~~~~~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~iPpLP~K~~~~~~~~~~~~~ 81 (123)
T cd07293 2 LEIDVTNPQTVGVGRGRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKALFRQLPFRGDDG 81 (123)
T ss_pred eEEEecCCeEecCCCcCEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHhccCCccCCCCCCchhhhcccccccC
Confidence 578888888873 499999999974 3689999999999999999998877778999999986 3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCCC
Q psy9741 102 NLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLV 141 (199)
Q Consensus 102 ~~~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~ 141 (199)
+++++++|+||++||.||+.+++||.++.++.|..||+.+
T Consensus 82 ~~~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~~~ 121 (123)
T cd07293 82 IFDDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQDE 121 (123)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcCCC
Confidence 6899999999999999999999999999999999999854
No 24
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=99.90 E-value=2.4e-23 Score=158.20 Aligned_cols=100 Identities=22% Similarity=0.227 Sum_probs=88.9
Q ss_pred EEEEcceEEe-CCeEEEEEEEEEC-------CeEEEEEecchhHHHHHHHHHhhcCC------CCCCCCCCcccCCCCHH
Q psy9741 41 NTHITSYEIK-DKIALYKITVQVG-------EVCWSLSHRYSDFVELNDKLVKDHSL------NKDLLPPKKVLRNLDPT 106 (199)
Q Consensus 41 ~V~I~~~~~~-~~~~vY~I~V~~~-------~~~w~V~RRYSeF~~Lh~~L~~~~~~------~~p~LP~K~~~~~~~~~ 106 (199)
.++|.+++++ ++||+|+|.+... ...|.|+||||||.+||+.|...++. ..|++|+|+++|+++++
T Consensus 4 ~~~V~dp~~~~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~g~f~~~ 83 (118)
T cd07288 4 FYSVTDPRTHPKGYTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVFGRFEAA 83 (118)
T ss_pred EEEecCCcCcCCCcEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCCCceeeccCCHH
Confidence 4678888887 4799999998753 36999999999999999999976522 36999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 107 FLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 107 ~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
+||+||.+||+||+.|++||.++.++++.+||+-
T Consensus 84 fIeeRR~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 117 (118)
T cd07288 84 VIEERRNAAEAMLLFTVNIPALYNSPQLKEFFRD 117 (118)
T ss_pred HHHHHHHHHHHHHHHHhCChhhcCChHHHHHHhc
Confidence 9999999999999999999999999999999973
No 25
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=99.90 E-value=5.8e-23 Score=155.65 Aligned_cols=103 Identities=23% Similarity=0.302 Sum_probs=91.7
Q ss_pred eEEEEcceEEeC----CeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCCHHHHH
Q psy9741 40 INTHITSYEIKD----KIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLDPTFLE 109 (199)
Q Consensus 40 ~~V~I~~~~~~~----~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~~~~ie 109 (199)
+.|+|.++++.+ .|++|.|.+.++ ...|.|+||||||.+||++|.+.++.. .|+||+|.+++++++++||
T Consensus 2 ~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~~~~~~~~ie 81 (116)
T cd07295 2 LEIEVRNPKTHGIGRGMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGKIFTNRFSDEVIE 81 (116)
T ss_pred eEEEEeCCcEecCCCCCEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHHHCCCCccCCCCCCccccCCCHHHHH
Confidence 568888888873 399999998763 467999999999999999999998765 6999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccc-CcHHHhcccCCCC
Q psy9741 110 KRKTDLEIYLQNVVNFLEKS-LPRCLIDFLHLVK 142 (199)
Q Consensus 110 ~Rr~~Le~yLq~ll~~~~l~-~~~~l~~FL~~~~ 142 (199)
+||.+||.||+.|+++|.++ .++.+.+||+.++
T Consensus 82 ~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~~~ 115 (116)
T cd07295 82 ERRQGLETFLQSVAGHPLLQTGSKVLAAFLQDPK 115 (116)
T ss_pred HHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCCCC
Confidence 99999999999999999998 6899999999764
No 26
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=99.90 E-value=4e-23 Score=158.02 Aligned_cols=102 Identities=23% Similarity=0.386 Sum_probs=91.1
Q ss_pred eEEEEcceEEeC----CeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcCCCCCCCCCCccc---------C
Q psy9741 40 INTHITSYEIKD----KIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVL---------R 101 (199)
Q Consensus 40 ~~V~I~~~~~~~----~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~~~~p~LP~K~~~---------~ 101 (199)
+.|+|.+++.+. +|++|.|.+.++ ...|.|+||||||.+||+.|.+..+...|+||+|+++ |
T Consensus 2 ~~i~V~dP~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~iPpLP~K~~~~~~~~~~~~~ 81 (123)
T cd06894 2 LEIDVVNPQTHGVGKKRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERDSKIVVPPLPGKALKRQLPFRGDDG 81 (123)
T ss_pred eEEEEeCCcEecCCCcCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHcCCCccCCCCCCceecccccccccC
Confidence 578888887773 399999999864 4689999999999999999998766678999999986 6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCCC
Q psy9741 102 NLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLV 141 (199)
Q Consensus 102 ~~~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~ 141 (199)
++++++||+||++||.||+.|++||.+..++.+..||+..
T Consensus 82 ~~~~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~~ 121 (123)
T cd06894 82 IFEEEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQEE 121 (123)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCCC
Confidence 7899999999999999999999999999999999999854
No 27
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=99.90 E-value=5.6e-23 Score=157.68 Aligned_cols=101 Identities=16% Similarity=0.233 Sum_probs=91.5
Q ss_pred EEEEcceEEeC------CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCCHHHHHHHHH
Q psy9741 41 NTHITSYEIKD------KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLDPTFLEKRKT 113 (199)
Q Consensus 41 ~V~I~~~~~~~------~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~~~~ie~Rr~ 113 (199)
.++|.++++.. .|++|+|.+.. ..|.|.||||||.+||+.|.+.++.. .|++|+|+.+|+++++||++|+.
T Consensus 2 ~~~v~dp~k~~~~~G~~~Yv~Y~I~~~~--~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~g~f~~~FIe~Rr~ 79 (127)
T cd07286 2 QCTIDDPTKQTKFKGMKSYISYKLVPSH--TGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQATGRFEEDFISKRRK 79 (127)
T ss_pred eEEeCCCcccCCCCCCcCEEEEEEEEec--CceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcCCCCCHHHHHHHHH
Confidence 57888888873 49999998654 46999999999999999999998765 79999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCcHHHhcccCCCCc
Q psy9741 114 DLEIYLQNVVNFLEKSLPRCLIDFLHLVKY 143 (199)
Q Consensus 114 ~Le~yLq~ll~~~~l~~~~~l~~FL~~~~~ 143 (199)
+||.||+.|++||.+..++.+..||+...-
T Consensus 80 ~Lq~FL~ria~hp~L~~s~~~~~FL~~~~~ 109 (127)
T cd07286 80 GLIWWMDHMCSHPVLARCDAFQHFLTCPST 109 (127)
T ss_pred HHHHHHHHHHcCcccccChHHHHHhcCCcc
Confidence 999999999999999999999999998643
No 28
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=99.90 E-value=4.6e-23 Score=157.02 Aligned_cols=99 Identities=24% Similarity=0.346 Sum_probs=88.1
Q ss_pred EEEcceEEe----------CCeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCC---
Q psy9741 42 THITSYEIK----------DKIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRN--- 102 (199)
Q Consensus 42 V~I~~~~~~----------~~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~--- 102 (199)
|+|.+++.. .+||+|.|+++++ ...|.|+||||||.+||++|.+.++.. +|++|+|.+++.
T Consensus 2 i~v~dp~~~~~~~~~~~~~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~ 81 (120)
T cd06865 2 ITVSDPKKEQEPSRVPLGGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVVESQVM 81 (120)
T ss_pred eEecCcceecCCccccCCCCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCcccccccc
Confidence 667777665 2599999999975 479999999999999999999998764 799999999853
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 103 LDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 103 ~~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
++++|||+|+.+||.||+.|++||.+..++.+..||..
T Consensus 82 ~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06865 82 QSAEFIEQRRVALEKYLNRLAAHPVIGLSDELRVFLTL 119 (120)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCceeecCcHHHHhccC
Confidence 59999999999999999999999999999999999975
No 29
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=99.90 E-value=4.8e-23 Score=157.72 Aligned_cols=101 Identities=30% Similarity=0.424 Sum_probs=89.8
Q ss_pred eEEEEcceEEeC----CeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcCC---CCCCCCCCcccCC-----
Q psy9741 40 INTHITSYEIKD----KIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHSL---NKDLLPPKKVLRN----- 102 (199)
Q Consensus 40 ~~V~I~~~~~~~----~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~~---~~p~LP~K~~~~~----- 102 (199)
+.|+|.+++++. .|++|.|.++++ ...|.|.||||||.+||++|.+.++. ..|++|+|++++.
T Consensus 1 ~~i~V~~p~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~~~~~~~ 80 (124)
T cd07281 1 LKVSITDPEKIGDGMNAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKV 80 (124)
T ss_pred CEEEEcCCeEeeCCcCCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccccchhhc
Confidence 468898988873 499999999874 46999999999999999999999863 3688999998763
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 103 -----LDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 103 -----~~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
++++|||+||.+||.||+.|++||.++.++.+..||+.
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~FL~~l~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07281 81 GKEDSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVREFLEK 123 (124)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 48999999999999999999999999999999999985
No 30
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=99.90 E-value=8.1e-23 Score=158.03 Aligned_cols=110 Identities=23% Similarity=0.353 Sum_probs=97.4
Q ss_pred CceEEEEcceEEeC----CeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcCCCCCCCCCCccc--------
Q psy9741 38 SKINTHITSYEIKD----KIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVL-------- 100 (199)
Q Consensus 38 ~~~~V~I~~~~~~~----~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~~~~p~LP~K~~~-------- 100 (199)
..++|+|.+++++. .|++|.|.++++ ...|.|+||||||.+||+.|.+..+..+|+||+|+++
T Consensus 2 ~~~~i~v~dP~~~~~g~~~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~g~~iPpLP~K~~~~~~~~~~~ 81 (132)
T cd07294 2 NFLEIDIFNPQTVGVGRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGD 81 (132)
T ss_pred ceEEEEeeCCeEecCCCCCEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHHcCCCccCCCCCCceecccccccc
Confidence 35789999999884 399999998864 4689999999999999999998877778999999972
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCCCCcchhH
Q psy9741 101 -RNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLVKYDINI 147 (199)
Q Consensus 101 -~~~~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~~~~~~~ 147 (199)
|+++++|||+||.+||.||+.|++||.+..++.+..||+.+.++-+.
T Consensus 82 ~~~~~~~fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~~~~~~~ 129 (132)
T cd07294 82 EGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDETIDRNY 129 (132)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCCCcCccc
Confidence 36799999999999999999999999999999999999998887443
No 31
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=99.89 E-value=7.2e-23 Score=155.54 Aligned_cols=99 Identities=32% Similarity=0.519 Sum_probs=87.0
Q ss_pred eEEEEcceEEe----CCeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCCHHHHHHHHHH
Q psy9741 40 INTHITSYEIK----DKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLDPTFLEKRKTD 114 (199)
Q Consensus 40 ~~V~I~~~~~~----~~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~~~~ie~Rr~~ 114 (199)
+.|+||++... +.|++|.|.|+.++..|.|.||||||.+||++|++.++.. .++||+|+++|+.+.+++|+||.+
T Consensus 1 ~~v~IPs~~~~g~~~~~y~vY~I~v~~~~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~g~~~~~~ie~Rr~~ 80 (118)
T cd07277 1 INVWIPSVFLRGKGSDAHHVYQVYIRIRDDEWNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAIGNKDAKFVEERRKR 80 (118)
T ss_pred CEEEcCcEEEecCCCCCEEEEEEEEEECCCEEEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCccCCCCHHHHHHHHHH
Confidence 47899998876 3499999999999999999999999999999999999865 589999999999999999999999
Q ss_pred HHHHHHHHHhcccccCcHHHhcccC
Q psy9741 115 LEIYLQNVVNFLEKSLPRCLIDFLH 139 (199)
Q Consensus 115 Le~yLq~ll~~~~l~~~~~l~~FL~ 139 (199)
||.||+.|+++ .+..++.+.+||+
T Consensus 81 Le~yL~~ll~~-~~~~~~~~~~~~~ 104 (118)
T cd07277 81 LQVYLRRVVNT-LIQTSPELTACPS 104 (118)
T ss_pred HHHHHHHHHHH-HHHhCchhhcCCC
Confidence 99999999997 4445555666665
No 32
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=99.89 E-value=6.5e-23 Score=155.32 Aligned_cols=101 Identities=25% Similarity=0.401 Sum_probs=90.4
Q ss_pred eEEEEcceEEe----CCeEEEEEEEEE-----CCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCccc----CCCCH
Q psy9741 40 INTHITSYEIK----DKIALYKITVQV-----GEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVL----RNLDP 105 (199)
Q Consensus 40 ~~V~I~~~~~~----~~~~vY~I~V~~-----~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~----~~~~~ 105 (199)
+.|+|.+++++ ++|++|.|++++ +...|.|+||||||.+||++|.+.++.. .|+||+|+++ +++++
T Consensus 1 ~~v~V~dP~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~ 80 (116)
T cd06860 1 LFITVDNPEKHVTTLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKGLLDRFSP 80 (116)
T ss_pred CEEEEcCCeeccCCCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCCCcchhhhhcccCCH
Confidence 35788888887 359999999986 3569999999999999999999998755 6999999984 56899
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 106 TFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 106 ~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
+|||+||++||.||+.|++||.+..++.+..||..
T Consensus 81 ~fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt~ 115 (116)
T cd06860 81 EFVATRMRALHKFLNRIVEHPVLSFNEHLKVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 99999999999999999999999999999999974
No 33
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=99.89 E-value=6.3e-23 Score=154.35 Aligned_cols=96 Identities=21% Similarity=0.261 Sum_probs=84.9
Q ss_pred EEEcceEEeC-----CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccC---------CCCHH
Q psy9741 42 THITSYEIKD-----KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLR---------NLDPT 106 (199)
Q Consensus 42 V~I~~~~~~~-----~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~---------~~~~~ 106 (199)
|.|++..... +|++|.|++.. |.|+||||||.+||+.|.+.+|.. .|+||+|.+++ +.+++
T Consensus 2 ~~i~~~~~~~~~~~~~y~~Y~I~~~~----~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~ 77 (112)
T cd06867 2 IQIVDAGKSSEGGSGSYIVYVIRLGG----SEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAKKPSKAKNDAK 77 (112)
T ss_pred cEEccCccccCCCccCEEEEEEEeee----EEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhhhhccccccccCcHH
Confidence 5677776652 49999998864 999999999999999999998765 69999998764 47999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCcHHHhcccCCC
Q psy9741 107 FLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLV 141 (199)
Q Consensus 107 ~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~ 141 (199)
+||+||.+||.||+.|+++|.++.++.+.+||+.+
T Consensus 78 ~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06867 78 IIERRKRMLQRFLNRCLQHPILRNDIVFQKFLDPN 112 (112)
T ss_pred HHHHHHHHHHHHHHHHhcChhhccCcHHHHhcCCC
Confidence 99999999999999999999999999999999864
No 34
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=99.89 E-value=9.3e-23 Score=153.44 Aligned_cols=101 Identities=23% Similarity=0.322 Sum_probs=90.4
Q ss_pred eEEEEcceEEeC----CeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCCHH--H
Q psy9741 40 INTHITSYEIKD----KIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLDPT--F 107 (199)
Q Consensus 40 ~~V~I~~~~~~~----~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~~~--~ 107 (199)
+.|.|.+++.++ +|++|.|.|+++ ...|.|+||||||.+||+.|.+.++.. .|+||+|+++|+.+.+ +
T Consensus 1 ~~~~V~~p~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~~~~~~~~~~ 80 (114)
T cd06859 1 FEISVTDPVKVGDGMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAVGRFKVKFEF 80 (114)
T ss_pred CEEEEeCcceecCCccCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCcccCccCccHHH
Confidence 468888888874 499999999974 468999999999999999999998654 6999999999987655 9
Q ss_pred HHHHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 108 LEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 108 ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
|++|+.+||.||+.|+++|.+..++.+..||+.
T Consensus 81 ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl~~ 113 (114)
T cd06859 81 IEKRRAALERFLRRIAAHPVLRKDPDFRLFLES 113 (114)
T ss_pred HHHHHHHHHHHHHHHhcChhhccCcHHHhhcCC
Confidence 999999999999999999999999999999974
No 35
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=99.89 E-value=8.1e-23 Score=152.31 Aligned_cols=87 Identities=30% Similarity=0.374 Sum_probs=81.4
Q ss_pred CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCC-CCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhcccccC
Q psy9741 52 KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSL-NKDLLPPKKVLRNLDPTFLEKRKTDLEIYLQNVVNFLEKSL 130 (199)
Q Consensus 52 ~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~-~~p~LP~K~~~~~~~~~~ie~Rr~~Le~yLq~ll~~~~l~~ 130 (199)
.|++|.|.+.. ..|.|+||||||.+||++|.+.++. ..|+||+|+++++.+++++++|+.+||.||+.|+++|.+..
T Consensus 17 ~y~~Y~i~~~~--~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~ 94 (105)
T cd06866 17 KHVEYEVSSKR--FKSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIGGSADREFLEARRRGLSRFLNLVARHPVLSE 94 (105)
T ss_pred CCEEEEEEEec--CCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCccccCCCHHHHHHHHHHHHHHHHHHhcChhhcc
Confidence 59999998874 6799999999999999999999875 46899999999999999999999999999999999999999
Q ss_pred cHHHhcccCC
Q psy9741 131 PRCLIDFLHL 140 (199)
Q Consensus 131 ~~~l~~FL~~ 140 (199)
++.+..||..
T Consensus 95 s~~l~~FL~~ 104 (105)
T cd06866 95 DELVRTFLTE 104 (105)
T ss_pred ChHHHhhcCC
Confidence 9999999974
No 36
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=99.89 E-value=1.3e-22 Score=155.63 Aligned_cols=100 Identities=25% Similarity=0.362 Sum_probs=92.0
Q ss_pred EEEEcceEEeC------CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCCHHHHHHHHH
Q psy9741 41 NTHITSYEIKD------KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLDPTFLEKRKT 113 (199)
Q Consensus 41 ~V~I~~~~~~~------~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~~~~ie~Rr~ 113 (199)
+|+|.++++.. .|++|.|.+.. ..|.|.||||||.+||++|.+.++.. .|+||+|+++|++++++|++||.
T Consensus 2 ~~~v~~p~~~~~~~g~~~y~~Y~I~~~~--~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~fie~Rr~ 79 (125)
T cd06862 2 HCTVTNPKKESKFKGLKSFIAYQITPTH--TNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVTGRFEEDFIEKRRE 79 (125)
T ss_pred EEEEcCccccCCCCCCcCEEEEEEEEec--CcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCccccCCCHHHHHHHHH
Confidence 68888888853 49999999875 68999999999999999999999865 79999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCcHHHhcccCCCC
Q psy9741 114 DLEIYLQNVVNFLEKSLPRCLIDFLHLVK 142 (199)
Q Consensus 114 ~Le~yLq~ll~~~~l~~~~~l~~FL~~~~ 142 (199)
+|+.||+.|++||.+..++.+.+||+..+
T Consensus 80 ~Le~fL~~I~~~p~l~~s~~~~~FL~~~~ 108 (125)
T cd06862 80 RLELWMNRLARHPVLSQSEVFRHFLTCTD 108 (125)
T ss_pred HHHHHHHHHhcCHhhhcChHHHHHcCCcc
Confidence 99999999999999999999999999863
No 37
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=99.89 E-value=1.1e-22 Score=155.74 Aligned_cols=101 Identities=20% Similarity=0.296 Sum_probs=90.7
Q ss_pred EEEEcceEEeC------CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCC--CCCCCCCcccCCCCHHHHHHHH
Q psy9741 41 NTHITSYEIKD------KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLN--KDLLPPKKVLRNLDPTFLEKRK 112 (199)
Q Consensus 41 ~V~I~~~~~~~------~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~--~p~LP~K~~~~~~~~~~ie~Rr 112 (199)
.|.|.++++.. .|+.|.|..++ ..+.|.||||||.+||+.|...++.. .|++|+|+++|+++++||++|+
T Consensus 2 ~~~V~dp~k~~~~~g~~~Yv~Y~I~~~~--~~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~g~f~~~FIe~Rr 79 (126)
T cd07285 2 DCVVADPRKGSKMYGLKSYIEYQLTPTN--TNRSVNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVTGRFEEEFIKMRM 79 (126)
T ss_pred EEEEcCcccccCCCCCcCeEEEEEEecc--CCeEeeCCccHHHHHHHHHHHhcCCCcccCCCCCccccCCCCHHHHHHHH
Confidence 57788887753 49999998875 36899999999999999999998643 7999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCcHHHhcccCCCCc
Q psy9741 113 TDLEIYLQNVVNFLEKSLPRCLIDFLHLVKY 143 (199)
Q Consensus 113 ~~Le~yLq~ll~~~~l~~~~~l~~FL~~~~~ 143 (199)
.+||.||+.|++||.++.++.|..||+..+.
T Consensus 80 ~~Le~FL~ri~~hP~L~~~~~l~~FL~~~~~ 110 (126)
T cd07285 80 ERLQAWMTRMCRHPVISESEVFQQFLNFRDE 110 (126)
T ss_pred HHHHHHHHHHHcCcCcCCCcHHHHHhCCCCH
Confidence 9999999999999999999999999998554
No 38
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=99.88 E-value=2.5e-22 Score=149.94 Aligned_cols=97 Identities=27% Similarity=0.362 Sum_probs=87.7
Q ss_pred ceEEEEcceEEeC----CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCCHHHHHHHHH
Q psy9741 39 KINTHITSYEIKD----KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLDPTFLEKRKT 113 (199)
Q Consensus 39 ~~~V~I~~~~~~~----~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~~~~ie~Rr~ 113 (199)
.++|+|++++..+ +|++|.|.+.. .|.|.||||||.+||++|.+.++.. .|+||+|++++ .+.+++|+||.
T Consensus 3 ~~~i~Ip~~~~~~~~~~~yvvY~I~~~~---~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~~-~~~~~ie~Rr~ 78 (106)
T cd06886 3 SVPISIPDYKHVEQNGEKFVVYNIYMAG---RQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPFS-LSEQQLDARRR 78 (106)
T ss_pred cceEecCCcceEcCCCCcEEEEEEEEcC---CEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcCC-CCHHHHHHHHH
Confidence 5789999987653 49999998862 7999999999999999999999865 58999999985 68899999999
Q ss_pred HHHHHHHHHHhcccccCcHHHhcccC
Q psy9741 114 DLEIYLQNVVNFLEKSLPRCLIDFLH 139 (199)
Q Consensus 114 ~Le~yLq~ll~~~~l~~~~~l~~FL~ 139 (199)
+||.|||.|+++|.+..++.+.+||.
T Consensus 79 ~Le~fL~~l~~~p~l~~s~~~~~FL~ 104 (106)
T cd06886 79 GLEQYLEKVCSIRVIGESDIMQDFLS 104 (106)
T ss_pred HHHHHHHHHhcCcccccCHHHHHHhc
Confidence 99999999999999999999999996
No 39
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=99.88 E-value=3.2e-22 Score=151.73 Aligned_cols=101 Identities=26% Similarity=0.392 Sum_probs=87.9
Q ss_pred eEEEEcceEEe-----CCeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCccc-----CCC
Q psy9741 40 INTHITSYEIK-----DKIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVL-----RNL 103 (199)
Q Consensus 40 ~~V~I~~~~~~-----~~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~-----~~~ 103 (199)
+.|.|.+.+.. ++|++|.|+|+++ ...|.|+||||||.+||+.|.+.++.. .|+||+|.++ +++
T Consensus 1 ~~i~V~dP~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~ 80 (118)
T cd06863 1 LECLVSDPQKELDGSSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRLEYITGDRF 80 (118)
T ss_pred CEEEEeCcccccCCCccCEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCccccccccccCC
Confidence 35667676665 2499999999864 257999999999999999999998765 7999999976 357
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 104 DPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 104 ~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
+++++++|+++||.||+.|+++|.+..++.+..||+.
T Consensus 81 ~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~s 117 (118)
T cd06863 81 SPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLES 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcCC
Confidence 9999999999999999999999999999999999974
No 40
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=99.88 E-value=2.6e-22 Score=154.71 Aligned_cols=100 Identities=29% Similarity=0.438 Sum_probs=87.8
Q ss_pred EEEEcceEEeC---------CeEEEEEEEEECC---------eEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCccc-
Q psy9741 41 NTHITSYEIKD---------KIALYKITVQVGE---------VCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVL- 100 (199)
Q Consensus 41 ~V~I~~~~~~~---------~~~vY~I~V~~~~---------~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~- 100 (199)
+|+|++.+... +|++|.|++++.. ..|.|+||||||.+||++|.+.++.. .|+||+|+++
T Consensus 2 ~i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~ 81 (129)
T cd06864 2 EITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAMF 81 (129)
T ss_pred eeEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCCcceec
Confidence 57787777752 4999999999742 46889999999999999999998765 6999999863
Q ss_pred -------CCCCHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 101 -------RNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 101 -------~~~~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
+++++++||+||++||.||+.|++||.+..++++..||..
T Consensus 82 ~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~~ 128 (129)
T cd06864 82 MWQKLSSDTFDPDFVERRRAGLENFLLRVAGHPELCQDKIFLEFLTH 128 (129)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHHHHcChhhhcCcHHHHhcCC
Confidence 4789999999999999999999999999999999999974
No 41
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=99.88 E-value=4.4e-22 Score=150.87 Aligned_cols=101 Identities=22% Similarity=0.314 Sum_probs=89.1
Q ss_pred eEEEEcceEEeC----CeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcCC-CCCCCCCCccc----CCCCH
Q psy9741 40 INTHITSYEIKD----KIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHSL-NKDLLPPKKVL----RNLDP 105 (199)
Q Consensus 40 ~~V~I~~~~~~~----~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~~-~~p~LP~K~~~----~~~~~ 105 (199)
+.|+|.+.+++. .|++|.|++++. ...|.|+||||||.+||+.|...++. ..|+||+|+++ +++++
T Consensus 1 ~~i~V~dP~~~~~~~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~ 80 (116)
T cd07283 1 LFVTVDDPKKHVCTMETYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSE 80 (116)
T ss_pred CEEEEcCcceecCCCcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCCcccccccccCCCH
Confidence 357888888873 499999999974 35899999999999999999999876 47999999875 34689
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 106 TFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 106 ~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
+|||+||++||.||+.|++||.+..++.+..||..
T Consensus 81 ~fie~Rr~~Le~FL~~i~~hp~L~~s~~~~~FLt~ 115 (116)
T cd07283 81 EFVETRRKALDKFLKRIADHPVLSFNEHFNVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 99999999999999999999999999999999974
No 42
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=99.88 E-value=6.1e-22 Score=153.30 Aligned_cols=101 Identities=29% Similarity=0.396 Sum_probs=91.6
Q ss_pred ceEEEEcceEEeC-----CeEEEEEEEEECC-----eEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCC--CH
Q psy9741 39 KINTHITSYEIKD-----KIALYKITVQVGE-----VCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNL--DP 105 (199)
Q Consensus 39 ~~~V~I~~~~~~~-----~~~vY~I~V~~~~-----~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~--~~ 105 (199)
...|.|+++...+ .|++|.|+|+... ..|.|.||||||.+||++|.+.++.. .|+||+|+++++. +.
T Consensus 19 ~~~i~I~~~~~~~~~~~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P~K~~~~~~~~~~ 98 (133)
T cd06876 19 RTRVSIQSYISDVEEEGKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKISLKYSKT 98 (133)
T ss_pred cceEEEeeEEeeecCCCceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHHHCcCCCCCCCCccccccCccCCH
Confidence 4579999988864 3999999999732 58999999999999999999998764 6899999999987 89
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCcHHHhcccC
Q psy9741 106 TFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLH 139 (199)
Q Consensus 106 ~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~ 139 (199)
+++++|+.+||.||+.|++++.++.++.+..||.
T Consensus 99 ~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~FLs 132 (133)
T cd06876 99 LLVEERRKALEKYLQELLKIPEVCEDEEFRKFLS 132 (133)
T ss_pred HHHHHHHHHHHHHHHHHHcCccccCChHHHHhhc
Confidence 9999999999999999999999999999999995
No 43
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=99.87 E-value=1.2e-21 Score=146.99 Aligned_cols=100 Identities=21% Similarity=0.287 Sum_probs=89.4
Q ss_pred EEEEcceEEe---CCeEEEEEEEEEC--CeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCC-CCHHHHHHHHH
Q psy9741 41 NTHITSYEIK---DKIALYKITVQVG--EVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRN-LDPTFLEKRKT 113 (199)
Q Consensus 41 ~V~I~~~~~~---~~~~vY~I~V~~~--~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~-~~~~~ie~Rr~ 113 (199)
.|+|.|++.. ++|++|.|.|+.. +..|.|.||||||.+||.+|++.++.. .|+||+|+++|+ .+.+++++|+.
T Consensus 1 ~~~i~~~~~~~~~~~~~vY~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~~~~~~~~~e~R~~ 80 (109)
T cd06883 1 EVSVFGFQKRYSPEKYYIYVVKVTRENQTEPSFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLGRSHIKQVAERRKI 80 (109)
T ss_pred CcEEEEEEEEecCCceEEEEEEEEECCCCCeEEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccCccchhHHHHHHHH
Confidence 3789999888 3699999999974 478999999999999999999999865 688999999986 46789999999
Q ss_pred HHHHHHHHHHhc-ccccCcHHHhcccCC
Q psy9741 114 DLEIYLQNVVNF-LEKSLPRCLIDFLHL 140 (199)
Q Consensus 114 ~Le~yLq~ll~~-~~l~~~~~l~~FL~~ 140 (199)
+||.||+.|++. +.+..++.+.+||.+
T Consensus 81 ~Le~YL~~Ll~~~~~i~~s~~v~~F~~~ 108 (109)
T cd06883 81 ELNSYLKSLFNASPEVAESDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHcCCHHHhcCHHHHHhcCC
Confidence 999999999997 589999999999975
No 44
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=99.87 E-value=1.3e-21 Score=148.29 Aligned_cols=101 Identities=21% Similarity=0.359 Sum_probs=88.8
Q ss_pred eEEEEcceEEeC----CeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccC----CCCH
Q psy9741 40 INTHITSYEIKD----KIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLR----NLDP 105 (199)
Q Consensus 40 ~~V~I~~~~~~~----~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~----~~~~ 105 (199)
+.|+|.+++.+. .|+.|.|.+++. ...|.|+||||||.+||+.|.+.++.. .|++|+|.+++ ++++
T Consensus 1 ~~i~V~dP~~~~~~~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~ 80 (116)
T cd07284 1 IFITVDEPESHVTAIETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKGMVERFNE 80 (116)
T ss_pred CEEEEeCcceeecCCcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCCcchhhhccccCCH
Confidence 357788887763 499999999974 458999999999999999999998765 69999998763 4689
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 106 TFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 106 ~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
+|||+|+++||.||+.|++||.+..++++..||..
T Consensus 81 ~fie~Rr~~Le~FL~ri~~hp~L~~s~~~~~FL~~ 115 (116)
T cd07284 81 DFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccChHHHHhhcC
Confidence 99999999999999999999999999999999973
No 45
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.87 E-value=1.6e-21 Score=150.91 Aligned_cols=100 Identities=24% Similarity=0.390 Sum_probs=86.2
Q ss_pred EEEcceEEeCC--eEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCCHHHHHHHHH
Q psy9741 42 THITSYEIKDK--IALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLDPTFLEKRKT 113 (199)
Q Consensus 42 V~I~~~~~~~~--~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~~~~ie~Rr~ 113 (199)
+.+..++..++ -++|.|+|... ...|.|.||||||.+||++|++.++.. .|++|+|++++++++++||+||.
T Consensus 31 ~~~~~~~~~~~~~~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~~~~p~~~lPplPpK~~l~~~~~~fiEeRR~ 110 (138)
T cd06879 31 VVYSEYQPLNNAVDKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLKKLFPKKKLPAAPPKGLLRMKNRALLEERRH 110 (138)
T ss_pred cceeeeecccCCceEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHHHHCCCCcCCCCCCcccccCCCHHHHHHHHH
Confidence 33444444444 56788888765 259999999999999999999999764 68899999999999999999999
Q ss_pred HHHHHHHHHHhcccccCcHHHhcccCCC
Q psy9741 114 DLEIYLQNVVNFLEKSLPRCLIDFLHLV 141 (199)
Q Consensus 114 ~Le~yLq~ll~~~~l~~~~~l~~FL~~~ 141 (199)
+||.||+.|++++.++.++.+.+||+++
T Consensus 111 gLE~fLq~Ll~~p~l~~s~~v~~FLele 138 (138)
T cd06879 111 SLEEWMGKLLSDIDLSRSVPVASFLELE 138 (138)
T ss_pred HHHHHHHHHHcCccccCCHHHHHHhCCC
Confidence 9999999999999999999999999863
No 46
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=99.86 E-value=3.4e-21 Score=148.07 Aligned_cols=95 Identities=24% Similarity=0.401 Sum_probs=83.4
Q ss_pred eEEEEcceEEeC----CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCCHHHHHHHHHH
Q psy9741 40 INTHITSYEIKD----KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLDPTFLEKRKTD 114 (199)
Q Consensus 40 ~~V~I~~~~~~~----~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~~~~ie~Rr~~ 114 (199)
+.|+|+++...+ +|++|.|+|+.++..|.|.||||||.+||++|++.++.. .++||+|++||+.+++++|+|+.+
T Consensus 1 ~~i~Ip~~~~~~~~~~~y~vY~I~v~~~~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP~Kk~~g~~~~~~ie~Rr~~ 80 (127)
T cd06874 1 IKITIPRYVLRGQGKDEHFEFEVKITVLDETWTVFRRYSRFRELHKTMKLKYPEVAALEFPPKKLFGNKSERVAKERRRQ 80 (127)
T ss_pred CEEEECCeEEecCCCCcEEEEEEEEEECCcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCCCceecCCCCHHHHHHHHHH
Confidence 478999987653 599999999998889999999999999999999998864 588999999999999999999999
Q ss_pred HHHHHHHHHhc-ccccCcHHH
Q psy9741 115 LEIYLQNVVNF-LEKSLPRCL 134 (199)
Q Consensus 115 Le~yLq~ll~~-~~l~~~~~l 134 (199)
||.||+.|++. +.+..++.+
T Consensus 81 Le~yL~~Ll~~~~~~~~~~~~ 101 (127)
T cd06874 81 LETYLRNFFSVCLKLPACPLY 101 (127)
T ss_pred HHHHHHHHHHhchhccCCccc
Confidence 99999999985 555555543
No 47
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=99.86 E-value=1.3e-21 Score=145.54 Aligned_cols=96 Identities=31% Similarity=0.388 Sum_probs=85.1
Q ss_pred EEEEcceEEe-----CCeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCC-CCCCCCCCcccCCCCHHHHHHHHHH
Q psy9741 41 NTHITSYEIK-----DKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSL-NKDLLPPKKVLRNLDPTFLEKRKTD 114 (199)
Q Consensus 41 ~V~I~~~~~~-----~~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~-~~p~LP~K~~~~~~~~~~ie~Rr~~ 114 (199)
+|+|++++.. ..|++|.|.|+ ..|.+.||||||.+||++|.+.++. ..|+||+|++++ ++.++||+||.+
T Consensus 1 ~v~I~~~~~~~~~~~~~y~~Y~I~v~---~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~-~~~~~ie~Rr~~ 76 (104)
T cd06885 1 HFSIPDTQELSDEGGSTYVAYNIHIN---GVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLLP-LTPAQLEERRLQ 76 (104)
T ss_pred CCccCCcceeccCCCCcEEEEEEEEC---CcEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCcccc-CCHHHHHHHHHH
Confidence 4678887664 24999999986 4588999999999999999999986 479999999995 788999999999
Q ss_pred HHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 115 LEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 115 Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
||.||+.|++++.+..++.+++||..
T Consensus 77 Le~yL~~l~~~~~l~~s~~~~~FL~~ 102 (104)
T cd06885 77 LEKYLQAVVQDPRIANSDIFNSFLLN 102 (104)
T ss_pred HHHHHHHHhcChhhccCHHHHHHHHh
Confidence 99999999999999999999999964
No 48
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=99.86 E-value=9e-21 Score=138.41 Aligned_cols=99 Identities=40% Similarity=0.638 Sum_probs=91.8
Q ss_pred EEEEcceEEe----CCeEEEEEEEEECC-eEEEEEecchhHHHHHHHHHhhcC-CCCCCCCCCcccCCCCHHHHHHHHHH
Q psy9741 41 NTHITSYEIK----DKIALYKITVQVGE-VCWSLSHRYSDFVELNDKLVKDHS-LNKDLLPPKKVLRNLDPTFLEKRKTD 114 (199)
Q Consensus 41 ~V~I~~~~~~----~~~~vY~I~V~~~~-~~w~V~RRYSeF~~Lh~~L~~~~~-~~~p~LP~K~~~~~~~~~~ie~Rr~~ 114 (199)
.|+|.+++.. +++++|.|.++.+. ..|.|+|||+||.+||+.|...++ ...|+||+|.++++.+.+++++|+.+
T Consensus 1 ~i~I~~~~~~~~~~~~~~~Y~i~v~~~~~~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~~~~~~~~~~~R~~~ 80 (106)
T cd06093 1 SVSIPDYEKVKDGGKKYVVYIIEVTTQGGEEWTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLFGNLDPEFIEERRKQ 80 (106)
T ss_pred CEEeCCceEEcCCCCCEEEEEEEEEECCCCeEEEEeehHHHHHHHHHHHHHCCCCccCCCCCCcccccCCHHHHHHHHHH
Confidence 3788898887 57999999999876 899999999999999999999987 45799999999998899999999999
Q ss_pred HHHHHHHHHhcccccCcHHHhcccC
Q psy9741 115 LEIYLQNVVNFLEKSLPRCLIDFLH 139 (199)
Q Consensus 115 Le~yLq~ll~~~~l~~~~~l~~FL~ 139 (199)
|+.||+.|++++.+..++.+.+||+
T Consensus 81 L~~yl~~l~~~~~~~~~~~~~~Fl~ 105 (106)
T cd06093 81 LEQYLQSLLNHPELRNSEELKEFLE 105 (106)
T ss_pred HHHHHHHHhcCcccccChHHHHHhC
Confidence 9999999999999999999999986
No 49
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=99.85 E-value=3.7e-21 Score=148.82 Aligned_cols=90 Identities=22% Similarity=0.390 Sum_probs=77.1
Q ss_pred CeEEEEEEEEEC----------------CeEEEEEecchhHHHHHHHHHhhcCCC---CCCCCCCcc----cCCCCHHHH
Q psy9741 52 KIALYKITVQVG----------------EVCWSLSHRYSDFVELNDKLVKDHSLN---KDLLPPKKV----LRNLDPTFL 108 (199)
Q Consensus 52 ~~~vY~I~V~~~----------------~~~w~V~RRYSeF~~Lh~~L~~~~~~~---~p~LP~K~~----~~~~~~~~i 108 (199)
.||+|+|.+.+. ...|.|.||||||.+||++|++..+.. ...+|+|.+ +|+++++||
T Consensus 20 ~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~P~k~~p~lp~g~~d~~fi 99 (132)
T cd06893 20 PYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKGPPKRLFDLPFGNMDKDKI 99 (132)
T ss_pred CeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHccCcccccccCCCCccCCCCCCCCCCHHHH
Confidence 499999998642 258999999999999999999864321 245677665 688999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCcHHHhcccCCC
Q psy9741 109 EKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLV 141 (199)
Q Consensus 109 e~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~ 141 (199)
|+||.+||.||+.|+++|.++.+++|++||.++
T Consensus 100 e~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 132 (132)
T cd06893 100 EARRGLLETFLRQLCSIPEISNSEEVQEFLAYG 132 (132)
T ss_pred HHHHHHHHHHHHHHHcCHhhhcCHHHHHHHccC
Confidence 999999999999999999999999999999863
No 50
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=99.85 E-value=1.2e-20 Score=141.99 Aligned_cols=101 Identities=21% Similarity=0.320 Sum_probs=90.1
Q ss_pred eEEEEcceEEeC---CeEEEEEEEEE--CCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCC-CCHHHHHHHH
Q psy9741 40 INTHITSYEIKD---KIALYKITVQV--GEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRN-LDPTFLEKRK 112 (199)
Q Consensus 40 ~~V~I~~~~~~~---~~~vY~I~V~~--~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~-~~~~~ie~Rr 112 (199)
.+|+|.|+++.. +|++|.|+|+. +...|.|+|||+||.+||++|++.||.. .|+||+|.++|+ .+++++|+|+
T Consensus 2 ~~v~v~~~~kr~~~~~~yvY~I~V~~~~~~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~~~~~~~~v~e~R~ 81 (111)
T cd06884 2 VRVTVVGFQKRYDPEKYYVYVVEVTRENQASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHVGRSNIKSVAEKRK 81 (111)
T ss_pred eEEEEEEEEEEecCCCeEEEEEEEEEcCCCceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceeecCCcchHHHHHHH
Confidence 478999999984 59999999984 3479999999999999999999999865 477999988875 5789999999
Q ss_pred HHHHHHHHHHHhc-ccccCcHHHhcccCC
Q psy9741 113 TDLEIYLQNVVNF-LEKSLPRCLIDFLHL 140 (199)
Q Consensus 113 ~~Le~yLq~ll~~-~~l~~~~~l~~FL~~ 140 (199)
.+||.||+.|++. +.++.|+.+..|+++
T Consensus 82 ~~L~~Yl~~Ll~~~~~is~~~~v~~FF~p 110 (111)
T cd06884 82 QDIQQFLNSLFKMAEEVSHSDLVYTFFHP 110 (111)
T ss_pred HHHHHHHHHHHcCCHHHhcChHHHHhcCc
Confidence 9999999999995 789999999999974
No 51
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=99.83 E-value=6.1e-20 Score=139.32 Aligned_cols=100 Identities=16% Similarity=0.202 Sum_probs=90.0
Q ss_pred eEEEEcceEEeC---CeEEEEEEEEE-CCeEEEEEecchhHHHHHHHHHhhcCC----------CCCCCCCCcccCCCCH
Q psy9741 40 INTHITSYEIKD---KIALYKITVQV-GEVCWSLSHRYSDFVELNDKLVKDHSL----------NKDLLPPKKVLRNLDP 105 (199)
Q Consensus 40 ~~V~I~~~~~~~---~~~vY~I~V~~-~~~~w~V~RRYSeF~~Lh~~L~~~~~~----------~~p~LP~K~~~~~~~~ 105 (199)
.+|+|.|+++.. +|++|.|+|.. ++..|.|+|||+||.+||.+|++.||. .+|.||+|.|+|+.
T Consensus 2 ~~~~~~~~~kr~~~~~~y~Y~i~v~~s~~~~~~v~RrYsdF~~L~~~L~~~fp~Eag~~~~~~r~lP~lP~k~~~~~~-- 79 (118)
T cd06887 2 RHIALLGFEKRFVPSQHYVYMFLVKWQDLSEKLVYRRFTEIYEFHKTLKEMFPIEAGDINKENRIIPHLPAPKWFDGQ-- 79 (118)
T ss_pred eeEEEEEEEEeecCCCcEEEEEEEEEcCCcEEEEEeeHHHHHHHHHHHHHhCCccccccCCCCCcCCCCCCCcccCcc--
Confidence 468999999984 69999999996 788999999999999999999999985 36889999999874
Q ss_pred HHHHHHHHHHHHHHHHHHhc-ccccCcHHHhcccCCC
Q psy9741 106 TFLEKRKTDLEIYLQNVVNF-LEKSLPRCLIDFLHLV 141 (199)
Q Consensus 106 ~~ie~Rr~~Le~yLq~ll~~-~~l~~~~~l~~FL~~~ 141 (199)
++.|+|+.+|+.||+.|+.. +.+..++.+..||.+.
T Consensus 80 ~v~e~Rr~~L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~ 116 (118)
T cd06887 80 RAAENRQGTLTEYCSTLLSLPPKISRCPHVLDFFKVR 116 (118)
T ss_pred hHHHHHHHHHHHHHHHHHhCCchhhCCHHHHHHhCcC
Confidence 99999999999999999874 5799999999999875
No 52
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.83 E-value=4.4e-20 Score=138.01 Aligned_cols=100 Identities=24% Similarity=0.288 Sum_probs=87.1
Q ss_pred EEEEcceEEe---CCeEEEEEEEEECCe--EEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCC-CHHHHHHHHH
Q psy9741 41 NTHITSYEIK---DKIALYKITVQVGEV--CWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNL-DPTFLEKRKT 113 (199)
Q Consensus 41 ~V~I~~~~~~---~~~~vY~I~V~~~~~--~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~-~~~~ie~Rr~ 113 (199)
+|+|.|+++. ++|.+|.|+|+..+. ...|+|||+||.+||++|++.||.. .|.||+|.++|+. ..+.+|+|+.
T Consensus 1 ~~~V~~f~Kr~~p~k~yvY~i~V~~~~~~~~~~I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~grs~~~~vae~R~~ 80 (109)
T cd07289 1 EVSVFTYHKRYNPDKHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSILFPLWKLPGFPNKMVLGRTHIKDVAAKRKV 80 (109)
T ss_pred CcEEeeEEEEEcCCCeEEEEEEEEECCCceeEEEEeeHHHHHHHHHHHHHHCCcccCCCCCCCeeeCCCcchHHHHHHHH
Confidence 4789999876 468899999998532 2449999999999999999999976 7999999999864 4789999999
Q ss_pred HHHHHHHHHHhc-ccccCcHHHhcccCC
Q psy9741 114 DLEIYLQNVVNF-LEKSLPRCLIDFLHL 140 (199)
Q Consensus 114 ~Le~yLq~ll~~-~~l~~~~~l~~FL~~ 140 (199)
+|+.|++.|++. +.++.++.+..|+.+
T Consensus 81 ~L~~Yl~~Ll~~p~~Is~~d~v~~FF~p 108 (109)
T cd07289 81 ELNSYIQSLMNSSTEVAECDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHcCChhhhcChHHHHhccc
Confidence 999999999996 578999999999974
No 53
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.83 E-value=6.5e-20 Score=139.51 Aligned_cols=83 Identities=27% Similarity=0.284 Sum_probs=75.8
Q ss_pred CeEEEEEEEEECC---eEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhccc
Q psy9741 52 KIALYKITVQVGE---VCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLDPTFLEKRKTDLEIYLQNVVNFLE 127 (199)
Q Consensus 52 ~~~vY~I~V~~~~---~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~~~~ie~Rr~~Le~yLq~ll~~~~ 127 (199)
+|++|.|+|+.+. ..|.|.||||||.+||++|++.+|.. .|+||+|++ .++|+||.+||.||+.|+++|.
T Consensus 32 ~~~~Y~I~V~~~~~~~~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~------~~~E~Rr~~Le~yL~~Ll~~p~ 105 (119)
T cd06869 32 HHYEFIIRVRREGEEYRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDK------LPREKLRLSLRQYLRSLLKDPE 105 (119)
T ss_pred ceEEEEEEEEECCCCCCceEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCch------hHHHHHHHHHHHHHHHHhcChh
Confidence 4999999999864 49999999999999999999999865 688999987 5789999999999999999999
Q ss_pred ccCcHHHhcccCC
Q psy9741 128 KSLPRCLIDFLHL 140 (199)
Q Consensus 128 l~~~~~l~~FL~~ 140 (199)
++.++++.+||..
T Consensus 106 l~~s~~~~~FL~~ 118 (119)
T cd06869 106 VAHSSILQEFLTS 118 (119)
T ss_pred hhcChHHHHhhCC
Confidence 9999999999974
No 54
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.83 E-value=5.9e-20 Score=143.34 Aligned_cols=103 Identities=29% Similarity=0.441 Sum_probs=87.8
Q ss_pred CceEEEEcceEEeC------CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCC---------------------
Q psy9741 38 SKINTHITSYEIKD------KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLN--------------------- 90 (199)
Q Consensus 38 ~~~~V~I~~~~~~~------~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~--------------------- 90 (199)
.+++|+|++++..+ .+++|.|+|+.++..|.|.|||+||.+||.+|....+..
T Consensus 2 ~~i~a~I~~~er~~~~~~~~~~~~Y~Iev~~g~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~~~~~ 81 (140)
T cd06895 2 EPIKARITDVERSGTTRHLLNPNLYTIELQHGQFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLKRSRK 81 (140)
T ss_pred CCcEEEEeEEeccCCCCCCCceEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhccccccc
Confidence 36789999987654 389999999999999999999999999999999863211
Q ss_pred ---------CCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCCC
Q psy9741 91 ---------KDLLPPKKVLRNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLV 141 (199)
Q Consensus 91 ---------~p~LP~K~~~~~~~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~ 141 (199)
+|.||.+...+ .+++++++|+++||.||+.|++++.++++..+.+||++.
T Consensus 82 ~~~~~~~~~lP~lP~~~~~~-~~~~~ie~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeVS 140 (140)
T cd06895 82 PEREKKNRRLPSLPALPDIL-VSEEQLDSRKKQLENYLQNLLKIPDYRNHPETLEFLEVS 140 (140)
T ss_pred cccccccccCCCCCCccccc-cCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHhhhccC
Confidence 45566666544 389999999999999999999999999999999999863
No 55
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=99.83 E-value=1.1e-19 Score=138.21 Aligned_cols=101 Identities=21% Similarity=0.293 Sum_probs=89.5
Q ss_pred eEEEEcceEEe---CCeEEEEEEEEE-CCeEEEEEecchhHHHHHHHHHhhcCCC----------CCCCCCCcccCCC-C
Q psy9741 40 INTHITSYEIK---DKIALYKITVQV-GEVCWSLSHRYSDFVELNDKLVKDHSLN----------KDLLPPKKVLRNL-D 104 (199)
Q Consensus 40 ~~V~I~~~~~~---~~~~vY~I~V~~-~~~~w~V~RRYSeF~~Lh~~L~~~~~~~----------~p~LP~K~~~~~~-~ 104 (199)
.+|+|.++++. ++|.+|.|+|+. ++..|.|+||||||.+||.+|.+.||.. +|.||+|+++|+. .
T Consensus 2 ~~~~v~~~ekr~~~~k~y~Y~i~V~~~dg~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~lP~k~~~g~s~~ 81 (119)
T cd06888 2 KDVKVIDVEKRRAPSKHYVYIINVTWSDGSSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFLPGKILFRRSHI 81 (119)
T ss_pred eeEEEEEEEEEecCCCcEEEEEEEEEcCCCEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCCCCCcccCcchh
Confidence 36899999998 469999999996 5779999999999999999999999862 6889999999975 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc-cccCcHHHhcccCC
Q psy9741 105 PTFLEKRKTDLEIYLQNVVNFL-EKSLPRCLIDFLHL 140 (199)
Q Consensus 105 ~~~ie~Rr~~Le~yLq~ll~~~-~l~~~~~l~~FL~~ 140 (199)
.+++++|+..|+.||+.|++.| .+..++.+..|+++
T Consensus 82 ~~~~e~R~~~L~~Yl~~Ll~lp~~Is~~~~v~~FF~p 118 (119)
T cd06888 82 RDVAVKRLKPIDEYCKALVRLPPHISQCDEVLRFFEA 118 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceeecCHHHHHhcCC
Confidence 6799999999999999999975 57799999999975
No 56
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=99.81 E-value=1.2e-19 Score=133.27 Aligned_cols=88 Identities=40% Similarity=0.634 Sum_probs=78.1
Q ss_pred CeEEEEEEEEE--CCeEEEEEecchhHHHHHHHHHhhcCC-CCCCCCCCcccC---CCCHHHHHHHHHHHHHHHHHHHhc
Q psy9741 52 KIALYKITVQV--GEVCWSLSHRYSDFVELNDKLVKDHSL-NKDLLPPKKVLR---NLDPTFLEKRKTDLEIYLQNVVNF 125 (199)
Q Consensus 52 ~~~vY~I~V~~--~~~~w~V~RRYSeF~~Lh~~L~~~~~~-~~p~LP~K~~~~---~~~~~~ie~Rr~~Le~yLq~ll~~ 125 (199)
++++|.|.|.. +...|.|.||||||.+||++|...++. ..|+||+|.+++ +.+++++++|+.+||.||+.|+++
T Consensus 11 ~~~~~~~~v~~~~~~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~~~~~~~~~~i~~R~~~L~~yL~~l~~~ 90 (105)
T smart00312 11 KHYYYVIEIETKTGLEEWTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFGRLNNFSEEFIEKRRRGLERYLQSLLNH 90 (105)
T ss_pred ceEEEEEEEEECCCCceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhcccCCcCCHHHHHHHHHHHHHHHHHHHcC
Confidence 46677777765 357999999999999999999999875 468999999986 578999999999999999999999
Q ss_pred ccccC-cHHHhcccC
Q psy9741 126 LEKSL-PRCLIDFLH 139 (199)
Q Consensus 126 ~~l~~-~~~l~~FL~ 139 (199)
+.+.. ++++.+||+
T Consensus 91 ~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 91 PELINESEVVLSFLE 105 (105)
T ss_pred HhhhccChHHHHhcC
Confidence 99999 999999985
No 57
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=99.81 E-value=4.4e-19 Score=130.81 Aligned_cols=102 Identities=34% Similarity=0.559 Sum_probs=91.1
Q ss_pred ceEEEEcceEEe--CCeEEEEEEEEEC--CeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCC---CCHHHHHH
Q psy9741 39 KINTHITSYEIK--DKIALYKITVQVG--EVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRN---LDPTFLEK 110 (199)
Q Consensus 39 ~~~V~I~~~~~~--~~~~vY~I~V~~~--~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~---~~~~~ie~ 110 (199)
-++|+|.+.+.. +..++|.+.|... ...|.|+|||+||.+||++|...++.. .|+||++.++++ .+++++++
T Consensus 3 ~~~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P~~~~~~~~~~~~~~~~~~ 82 (113)
T PF00787_consen 3 IIQVSVVDPETSGNKKKTYYIYQIELQDGKESWSVYRRYSDFYELHRKLKKRFPSRKLPPFPPKQWFSNSRNLDPEFIEE 82 (113)
T ss_dssp EEEEEEEEEEEESSSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSSTSSSSSSSSTTSHHHHHH
T ss_pred EEEEEEcCCEEEcCCCEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHhhhhcccccccCCccccccccccccHHHHHH
Confidence 367899988876 3588888888875 379999999999999999999998744 689999999886 89999999
Q ss_pred HHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 111 RKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 111 Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
|+..|+.||+.|++++.+..++.+..||+.
T Consensus 83 R~~~L~~yL~~l~~~~~~~~s~~l~~FL~~ 112 (113)
T PF00787_consen 83 RRQALEKYLQSLLSHPELRSSEALKEFLES 112 (113)
T ss_dssp HHHHHHHHHHHHHTSCHHHHSHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcChhhhCchHHHHhcCC
Confidence 999999999999999999889999999985
No 58
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=99.81 E-value=4.4e-19 Score=132.69 Aligned_cols=99 Identities=20% Similarity=0.233 Sum_probs=86.1
Q ss_pred EEEcceEEe---CCeEEEEEEEEECC--eEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCC-HHHHHHHHHH
Q psy9741 42 THITSYEIK---DKIALYKITVQVGE--VCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLD-PTFLEKRKTD 114 (199)
Q Consensus 42 V~I~~~~~~---~~~~vY~I~V~~~~--~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~-~~~ie~Rr~~ 114 (199)
|-+.++++. ++|.+|.|+|+..+ ..|.|.|||+||.+||++|++.||.. .|.||+|.++|+.+ .+.+|+|+.+
T Consensus 2 ~~~~~~~kr~~p~k~y~Y~I~V~~~~~~~~~~I~RrY~eF~~Lh~kLk~~FP~~~lP~LP~k~~~g~s~~~~vae~R~~~ 81 (109)
T cd07290 2 VFLCRHESTFNPSKGYAYVVKVQREGHKEATFVQRTFEEFQELHNKLRLLFPSSKLPSFPSRFVIGRSRGEAVAERRKEE 81 (109)
T ss_pred eeEeeeeEEecCCCcEEEEEEEEECCCceeEEEEeeHHHHHHHHHHHHHHCccccCCCCCCCcccCccccHHHHHHHHHH
Confidence 446677776 56888999999754 45999999999999999999999875 69999999999765 7999999999
Q ss_pred HHHHHHHHHh-cccccCcHHHhcccCC
Q psy9741 115 LEIYLQNVVN-FLEKSLPRCLIDFLHL 140 (199)
Q Consensus 115 Le~yLq~ll~-~~~l~~~~~l~~FL~~ 140 (199)
|+.|++.|+. .+.++.|+.+..|+.+
T Consensus 82 L~~Yl~~Ll~~~~~Is~s~~v~~FF~p 108 (109)
T cd07290 82 LNGYIWHLIHAPPEVAECDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHcCChheecCHHHHHhccc
Confidence 9999999887 4679999999999974
No 59
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=99.81 E-value=5.2e-19 Score=133.18 Aligned_cols=99 Identities=20% Similarity=0.273 Sum_probs=89.0
Q ss_pred EEEEcceEEeCCeEEEEEEEEE-CCeEEEEEecchhHHHHHHHHHhhcCCC---------CCCCCCCcccCCCCHHHHHH
Q psy9741 41 NTHITSYEIKDKIALYKITVQV-GEVCWSLSHRYSDFVELNDKLVKDHSLN---------KDLLPPKKVLRNLDPTFLEK 110 (199)
Q Consensus 41 ~V~I~~~~~~~~~~vY~I~V~~-~~~~w~V~RRYSeF~~Lh~~L~~~~~~~---------~p~LP~K~~~~~~~~~~ie~ 110 (199)
+++|+++...+++.+|.|+|+. ++..|.|.|||+||++||.+|.+.||.. +|.||++... +.+.+++++
T Consensus 2 ~~~V~~~~~~~~~y~Y~i~v~~s~~~~~~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~-~~~~~~~e~ 80 (112)
T cd06890 2 SASVESVLLEDNRYWYRVRATLSDGKTRYLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPYLPGPVTD-VVNDSISLK 80 (112)
T ss_pred eEEEEEEEEECCEEEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCCCCCCccC-cchhHHHHH
Confidence 5889999999999999999997 6899999999999999999999999742 4777776654 468899999
Q ss_pred HHHHHHHHHHHHHhcc-cccCcHHHhcccCC
Q psy9741 111 RKTDLEIYLQNVVNFL-EKSLPRCLIDFLHL 140 (199)
Q Consensus 111 Rr~~Le~yLq~ll~~~-~l~~~~~l~~FL~~ 140 (199)
|+.+|+.||+.|++.| .+..|+.+.+||.+
T Consensus 81 R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff~~ 111 (112)
T cd06890 81 RLNDLNEYLNELINLPAYIQTSEVVRDFFAN 111 (112)
T ss_pred HHHHHHHHHHHHHcCCHHhccCHHHHHHcCc
Confidence 9999999999999998 89999999999975
No 60
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.79 E-value=1e-18 Score=134.75 Aligned_cols=103 Identities=19% Similarity=0.371 Sum_probs=85.3
Q ss_pred CceEEEEcceEEe--------CCeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcc---------
Q psy9741 38 SKINTHITSYEIK--------DKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKV--------- 99 (199)
Q Consensus 38 ~~~~V~I~~~~~~--------~~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~--------- 99 (199)
.++.|.|.+.|.. ..|++|.|+|+.+...|+|+|||+||.+||..|.. ++.. ..+||+|.|
T Consensus 2 ~~i~~~i~~~eR~~~~~~~~~~~~t~Y~I~v~~g~~~w~V~rRy~~F~~Lh~~L~~-~~~~~~~plP~k~~~~~r~~~~~ 80 (135)
T cd07296 2 CPIKARVLEVERFTSTSDVKKPSLNVYTIELTHGEFTWQVKRKFKHFQELHRELLR-YKAFIRIPIPTRSHTVRRQTIKR 80 (135)
T ss_pred CceEEEEEEEEEeeccccccccceEEEEEEEEeCCEEEEEEeehHHHHHHHHHHHh-cCCCCCCCCCcccchhhcccccc
Confidence 3678888887763 24999999999999999999999999999999998 5554 356889887
Q ss_pred --------cCCC-CHHHHH----HHHHHHHHHHHHHHhcccccCcHHHhcccCCC
Q psy9741 100 --------LRNL-DPTFLE----KRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLV 141 (199)
Q Consensus 100 --------~~~~-~~~~ie----~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~ 141 (199)
+++. +....| +|+++||+||+.|++.+..++...+.+||++.
T Consensus 81 ~~~~~~p~lp~~~~~~v~e~~~~sRr~~LE~YL~~LL~~~~~Rn~~a~~eFLeVs 135 (135)
T cd07296 81 GEPRHMPSLPRGAEEEAREEQFSSRRKQLEDYLSKLLKMPMYRNYHATMEFIDVS 135 (135)
T ss_pred ccccccccCCCCCCccccccchHHHHHHHHHHHHHHhcChhhcCCHHHHhheecC
Confidence 4322 223444 89999999999999999999999999999863
No 61
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=99.79 E-value=1.1e-18 Score=135.78 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=92.8
Q ss_pred CCCceEEEEcceEEeC-CeEEEEEEEEEC-----CeEE-EEEecchhHHHHHHHHHhhcCC-CCCCCCCCccc-CCCCHH
Q psy9741 36 NNSKINTHITSYEIKD-KIALYKITVQVG-----EVCW-SLSHRYSDFVELNDKLVKDHSL-NKDLLPPKKVL-RNLDPT 106 (199)
Q Consensus 36 ~~~~~~V~I~~~~~~~-~~~vY~I~V~~~-----~~~w-~V~RRYSeF~~Lh~~L~~~~~~-~~p~LP~K~~~-~~~~~~ 106 (199)
....+.|.|++.+.++ ++.+|.+.++++ ...+ .|.||||||.+||++|...++. ..|++|+|... +..+.+
T Consensus 26 ~~~~l~i~Vtd~ek~G~~~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP~k~~~~~~~~~E 105 (140)
T cd06891 26 PKYFLRVRVTGIERNKSKDPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALPLPSTSYGSNNEE 105 (140)
T ss_pred CCceEEEEEeCceecCCCCeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCCCccccCCCCCHH
Confidence 3556899999999986 699999999864 3445 6999999999999999999754 46999999975 778999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCcHHHhcccCC
Q psy9741 107 FLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 107 ~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
++++|+.+||.||+.|++||.+..+++|..||+.
T Consensus 106 ~~~~rr~~LqrfL~RV~~hP~L~~d~~l~~FLEs 139 (140)
T cd06891 106 DARKLKANLQRWFNRVCSDPILIRDEELRFFIES 139 (140)
T ss_pred HHHHHHHHHHHHHHHHhCChhhccCHHHHHHhcc
Confidence 9999999999999999999999999999999975
No 62
>KOG2527|consensus
Probab=99.76 E-value=9.4e-19 Score=133.20 Aligned_cols=110 Identities=25% Similarity=0.381 Sum_probs=93.5
Q ss_pred CCceEEEEcceEEeC----CeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcC-CCCCCCCCCcccCCC-CH
Q psy9741 37 NSKINTHITSYEIKD----KIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHS-LNKDLLPPKKVLRNL-DP 105 (199)
Q Consensus 37 ~~~~~V~I~~~~~~~----~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~-~~~p~LP~K~~~~~~-~~ 105 (199)
..-+.|.|.+....+ .||-|.|...++ ...-.|.||||||.|||+.|...-+ +..|+||+|.|+.+. ..
T Consensus 15 ~nfLeI~V~nPrt~~~~~~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s~kvvvP~LPgK~~~~~~~fr 94 (144)
T KOG2527|consen 15 ENFLEIDVINPRTHGDGKNRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERESGKVVVPELPGKALFRQLPFR 94 (144)
T ss_pred cceEEEEeeCCcccccccccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHhcCchH
Confidence 346889999988853 499999999985 3456899999999999999999874 557999999998763 34
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCCCCcchh
Q psy9741 106 TFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLVKYDIN 146 (199)
Q Consensus 106 ~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~~~~~~ 146 (199)
+|||+||++||.||+.++.||.+.++..|..||.....+.+
T Consensus 95 e~IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~~~~~~ 135 (144)
T KOG2527|consen 95 EFIEERRQGLEVFLRKVAGHPLLQNERCLHLFLQSELIDKN 135 (144)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhhccHHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999986655543
No 63
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=99.73 E-value=2.1e-17 Score=128.36 Aligned_cols=102 Identities=20% Similarity=0.284 Sum_probs=89.4
Q ss_pred ceEEEEcceEEeCCeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhh---cCCCCCCCCCCccc----------
Q psy9741 39 KINTHITSYEIKDKIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKD---HSLNKDLLPPKKVL---------- 100 (199)
Q Consensus 39 ~~~V~I~~~~~~~~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~---~~~~~p~LP~K~~~---------- 100 (199)
.+.|.|++.-....++.|+|.++++ .....|.|||+||.|||++|.+. -|..+||+|+|..+
T Consensus 2 ~~~~~i~da~~~~~~V~Y~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~k~~kl 81 (141)
T cd06892 2 SLQVDISDALSERDKVKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASREKLQKL 81 (141)
T ss_pred ceeeecccccccCCeEEEEEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCcccccccceeeec
Confidence 3678888888888899999999863 67899999999999999999986 35567999999765
Q ss_pred ----CCCCHHHHHHHHHHH---------------HHHHHHHHhcccccCcHHHhcccCC
Q psy9741 101 ----RNLDPTFLEKRKTDL---------------EIYLQNVVNFLEKSLPRCLIDFLHL 140 (199)
Q Consensus 101 ----~~~~~~~ie~Rr~~L---------------e~yLq~ll~~~~l~~~~~l~~FL~~ 140 (199)
|++..+++++|+..| +.||+.+..||.+..+..+..||+.
T Consensus 82 g~~d~~~~~ef~~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~HP~L~~~~~l~~FLe~ 140 (141)
T cd06892 82 GEGEGSMTKEEFEKMKQELEAEYLAIFKKTVAMHEVFLRRLASHPVLRNDANFRVFLEY 140 (141)
T ss_pred ccCccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCeeecCHhHHhhhcC
Confidence 246789999999999 5899999999999999999999985
No 64
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=99.71 E-value=3.2e-17 Score=126.51 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=85.8
Q ss_pred ceEEEEcceEEeCCeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhh--c-CCCCCCCCCCcccCC--------
Q psy9741 39 KINTHITSYEIKDKIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKD--H-SLNKDLLPPKKVLRN-------- 102 (199)
Q Consensus 39 ~~~V~I~~~~~~~~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~--~-~~~~p~LP~K~~~~~-------- 102 (199)
.+.|.|++.-....++.|+|..+++ +....|.||||||.|||++|.+. + |..+||+|+|..++.
T Consensus 2 ~l~i~vsD~~~~~d~V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~~~~k~~kl 81 (141)
T cd07291 2 SLQIDIPDALSERDKVKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPREKMQKL 81 (141)
T ss_pred ccEEEeccccccCCCEEEEEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccchHHhhhhc
Confidence 4689999998888899999998863 57799999999999999999974 3 455799999988732
Q ss_pred ------C-CHHHHHHH--------------HHHHHHHHHHHHhcccccCcHHHhcccCCC
Q psy9741 103 ------L-DPTFLEKR--------------KTDLEIYLQNVVNFLEKSLPRCLIDFLHLV 141 (199)
Q Consensus 103 ------~-~~~~ie~R--------------r~~Le~yLq~ll~~~~l~~~~~l~~FL~~~ 141 (199)
+ ..+|++.| +..||.|||.|++||.++.+..+..||+.+
T Consensus 82 ~~~~~~~~~eef~~~r~~~~~~~~~~~kk~~a~lE~fL~Ria~HP~l~~d~~f~~FLe~~ 141 (141)
T cd07291 82 GEGEGSMTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSHPSLSKDRNFHIFLEYD 141 (141)
T ss_pred ccCcccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCeeccCcchhhhccCC
Confidence 1 35677655 345999999999999999999999999853
No 65
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=99.71 E-value=5.1e-17 Score=125.22 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=85.7
Q ss_pred ceEEEEcceEEeCCeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhh--c-CCCCCCCCCCcccCC--------
Q psy9741 39 KINTHITSYEIKDKIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKD--H-SLNKDLLPPKKVLRN-------- 102 (199)
Q Consensus 39 ~~~V~I~~~~~~~~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~--~-~~~~p~LP~K~~~~~-------- 102 (199)
.+.|.|++.-.....+.|+|..++. .....|.||||||.|||++|.+. + |..+||+|+|..++.
T Consensus 2 ~l~v~isD~~~~~d~V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~~~k~~kl 81 (141)
T cd07292 2 ALQVDISDALSERDKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKL 81 (141)
T ss_pred ceEEEcccccccCCceEEEEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccchHHHHHhh
Confidence 4789999998888889999999864 56899999999999999999976 3 556799999987741
Q ss_pred ------CCHHHHH---------------HHHHHHHHHHHHHHhcccccCcHHHhcccCCC
Q psy9741 103 ------LDPTFLE---------------KRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLV 141 (199)
Q Consensus 103 ------~~~~~ie---------------~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~ 141 (199)
+..++.+ +|+..+|.|||.|++||.++.+..+..||+.+
T Consensus 82 g~~~~~~~~ee~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~~ 141 (141)
T cd07292 82 GEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYN 141 (141)
T ss_pred ccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCcchhheeccC
Confidence 2223333 66788899999999999999999999999853
No 66
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=99.68 E-value=7.6e-16 Score=117.06 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=91.5
Q ss_pred CCceEEEEcceEEeCCeEEEEEEEEE-CCeEEEEEecchhHHHHHHHHHhhcCCC----------CCCCCCCcccCCC--
Q psy9741 37 NSKINTHITSYEIKDKIALYKITVQV-GEVCWSLSHRYSDFVELNDKLVKDHSLN----------KDLLPPKKVLRNL-- 103 (199)
Q Consensus 37 ~~~~~V~I~~~~~~~~~~vY~I~V~~-~~~~w~V~RRYSeF~~Lh~~L~~~~~~~----------~p~LP~K~~~~~~-- 103 (199)
.-..+|...|.+..+.|.+|.|.|+. ++..|.|+|||+||.+||.+|.+.||.. +|.||.+.++|+.
T Consensus 3 r~~~~v~~~g~~k~~~h~~Y~i~V~wsdgs~~~iyR~y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~~~~~~~~~~ 82 (121)
T cd06889 3 RHPVDVQGVGVMQKRRHKTYMFSVLWSDGSELFVYRSLEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKDAPSLGSLKG 82 (121)
T ss_pred cceEEEEEEeeecccceeEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCCCcccCCccc
Confidence 34578888999998899999999996 7899999999999999999999999852 6899999999975
Q ss_pred CHHHHHHHHHHHHHHHHHHHhc-ccccCcHHHhcccCC
Q psy9741 104 DPTFLEKRKTDLEIYLQNVVNF-LEKSLPRCLIDFLHL 140 (199)
Q Consensus 104 ~~~~ie~Rr~~Le~yLq~ll~~-~~l~~~~~l~~FL~~ 140 (199)
..+.-+.|+..|+.|++.|++. +.+..|+.+..|+.+
T Consensus 83 ~~~~a~~R~~~L~~Y~~~Ll~lp~~Is~~~~V~~FF~p 120 (121)
T cd06889 83 STSRSLARLKLLETYCQELLRLDEKVSRSPEVIQFFAP 120 (121)
T ss_pred ccchHHHHHHHHHHHHHHHHcCCcceecCHHHHHhcCC
Confidence 3345789999999999999996 568999999999975
No 67
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=99.49 E-value=4.2e-13 Score=102.08 Aligned_cols=101 Identities=20% Similarity=0.352 Sum_probs=79.9
Q ss_pred CceEEEEcceEEeCC----e--EEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcC-CC--------------------
Q psy9741 38 SKINTHITSYEIKDK----I--ALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHS-LN-------------------- 90 (199)
Q Consensus 38 ~~~~V~I~~~~~~~~----~--~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~-~~-------------------- 90 (199)
.++.+.|.+++...+ + ++|+|+++.+...|.|.|||.+|.+||..|...-. ..
T Consensus 2 ~pi~~~V~~~er~~s~s~~~~~~lYtIeltHG~F~W~IkRryKhF~~LHr~L~~~k~~~~~~P~~~~~~~r~~~~~~~~~ 81 (130)
T cd07297 2 VPVTAKVENTERYTTGSKVHVCTLYTVRLTHGEFTWTVKKKFKHFQELHRDLYRHKVMLSFLPLGRFAIQHRQQLEGLTE 81 (130)
T ss_pred CceEEEEEEEEEeecccccccceeEEEEEecCceEEEEEehhhhHHHHHHHHHHHHHhhhcCCchhhhhhhccccccccC
Confidence 368899999888632 3 79999999999999999999999999999987311 11
Q ss_pred -CCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCCC
Q psy9741 91 -KDLLPPKKVLRNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLV 141 (199)
Q Consensus 91 -~p~LP~K~~~~~~~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~ 141 (199)
.|.||...- .. .+-+..|+++||+||+.|+..+..++.....+||++.
T Consensus 82 ~mP~LP~~~~--~~-~~~~~sr~kqLE~YLn~LL~~~~YRn~~atleFLeVS 130 (130)
T cd07297 82 EMPSLPGTDR--EA-SRRTASKPKYLENYLNNLLENSFYRNYHAMMEFLAVS 130 (130)
T ss_pred cCCCCCCCCc--hh-hhhhhhHHHHHHHHHHHHhcchhhcCChhheeeeecC
Confidence 233443321 11 3557789999999999999999999999999999863
No 68
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.47 E-value=3.2e-13 Score=98.47 Aligned_cols=95 Identities=23% Similarity=0.297 Sum_probs=81.5
Q ss_pred EEEcceEEeCCeEEEEEEEEE-CCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCCHHHHHHHHHHHHHHH
Q psy9741 42 THITSYEIKDKIALYKITVQV-GEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLDPTFLEKRKTDLEIYL 119 (199)
Q Consensus 42 V~I~~~~~~~~~~vY~I~V~~-~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~~~~ie~Rr~~Le~yL 119 (199)
|+|-|+.+..+| .|.|+|.- ++..-.|.|+|.||.+||++|++.||.. .|.||.+..++..+. -++|.+.|+.|+
T Consensus 2 ~~i~~f~k~~s~-lY~i~V~~sd~~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~~~~~~~~~--~~~R~~~L~~Yl 78 (101)
T cd06896 2 ATILGFSKKSSN-LYLVQVTQSCNLVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHWWHLPFTDS--DHKRVRDLNHYL 78 (101)
T ss_pred ceEEEeecccce-EEEEEEEEeCCCcceeeecHHHHHHHHHHHHHHCccccccCCCCccccCcccH--HHHHHHHHHHHH
Confidence 678888888775 59999985 6778899999999999999999999876 588999977765544 378999999999
Q ss_pred HHHHhc-ccccCcHHHhcccC
Q psy9741 120 QNVVNF-LEKSLPRCLIDFLH 139 (199)
Q Consensus 120 q~ll~~-~~l~~~~~l~~FL~ 139 (199)
+.|++. +.+++++.+..|+.
T Consensus 79 ~~Ll~~~~eVa~sd~v~sFF~ 99 (101)
T cd06896 79 EQLLSGSREVANSDCVLSFFL 99 (101)
T ss_pred HHHHccCHHHhcchHHHHHhh
Confidence 999995 67999999999984
No 69
>KOG2273|consensus
Probab=99.45 E-value=6.1e-13 Score=122.92 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=89.6
Q ss_pred ceEEEEcceE-Ee----CCeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCC-----
Q psy9741 39 KINTHITSYE-IK----DKIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRN----- 102 (199)
Q Consensus 39 ~~~V~I~~~~-~~----~~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~----- 102 (199)
.+.|.++..+ .. .+|+.|.|.+.+. .....|+||||||.+||+.|...|+.. +|++|+|...+.
T Consensus 109 ~~~i~~~~~~~~~~~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP~k~~~~~~~~~~ 188 (503)
T KOG2273|consen 109 DLSITVSDPEPEIGDGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLPEKSIVGSKSGDS 188 (503)
T ss_pred heeeecCCCccccCCCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCCchhhhhccccCC
Confidence 3556666655 22 3599999999863 567899999999999999999998765 699999988654
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCCCC
Q psy9741 103 LDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLVK 142 (199)
Q Consensus 103 ~~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~~ 142 (199)
++.+|+++||++|++||+.+..||.+..+.+++.||+.+.
T Consensus 189 ~s~ef~e~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~~ 228 (503)
T KOG2273|consen 189 FSDEFIEKRRKALERFLNRLSLHPVLSNDEDFRLFLESDS 228 (503)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcccc
Confidence 6899999999999999999999999999999999999984
No 70
>KOG2528|consensus
Probab=99.36 E-value=1.3e-12 Score=116.65 Aligned_cols=107 Identities=22% Similarity=0.304 Sum_probs=92.9
Q ss_pred cCCCceEEEEcceEEeC------CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCCHHH
Q psy9741 35 SNNSKINTHITSYEIKD------KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLDPTF 107 (199)
Q Consensus 35 ~~~~~~~V~I~~~~~~~------~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~~~~ 107 (199)
.+...+.+.|.+..+.. +|+.|.+.-+... -.|.|||..|.|||++|..+|+.. .|+||.|..-|++..+|
T Consensus 181 ~~~~~~~c~v~~p~k~sk~kg~ks~i~y~ltpt~t~--~~v~rrykhfdwl~~rl~~kf~~i~vp~Lpdkq~~gr~Ee~f 258 (490)
T KOG2528|consen 181 ANPSPFRCVVDDPKKESKFKGLKSYIAYQLTPTHTN--ISVSRRYKHFDWLYERLLLKFPLIPVPPLPDKQVTGRFEEDF 258 (490)
T ss_pred cCCCCeeEEecCcccccccccchheeEeeecccccC--cchhhcccccHHHHHHHHhhcccccCCCCCccccccchhHHH
Confidence 34667888888877764 4999998665432 239999999999999999998765 69999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCcHHHhcccCCCCc
Q psy9741 108 LEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLVKY 143 (199)
Q Consensus 108 ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~~~ 143 (199)
|++||++|+.+++.++.||.+..++.++.||.....
T Consensus 259 i~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c~~d 294 (490)
T KOG2528|consen 259 IEKRRKGLQWWMNHMCRHPVLSQCEVFQHFLTCPTD 294 (490)
T ss_pred HHHHHHHHHHHHHHhhcchHhhhhHHHHHHHcCCcc
Confidence 999999999999999999999999999999998733
No 71
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=98.92 E-value=2.8e-09 Score=99.02 Aligned_cols=79 Identities=29% Similarity=0.332 Sum_probs=69.3
Q ss_pred CeEEEEEEEEEC-----CeEE---EEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccC-----CCCHHHHHHHHHHHHH
Q psy9741 52 KIALYKITVQVG-----EVCW---SLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLR-----NLDPTFLEKRKTDLEI 117 (199)
Q Consensus 52 ~~~vY~I~V~~~-----~~~w---~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~-----~~~~~~ie~Rr~~Le~ 117 (199)
.|+.|.|..... .... +|.||||||.+||..|...+|.. +|++|+|++.+ +++.+|+++|+..|++
T Consensus 150 ~~~~y~i~~~~n~~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~~p~~~iPplP~K~~~s~~~~~~~~~~~i~~r~~~L~~ 229 (524)
T COG5391 150 KHTSYEIITVTNLPSFQLRESRPLVVRRRYSDFESLHSILIKLLPLCAIPPLPSKKSNSEYYGDRFSDEFIEERRQSLQN 229 (524)
T ss_pred CcceeeEEEeecCccccccccccceeeeccccHHHHHHHhhhhCCCCCCCCCCchhhhccccccccchHHHHHHHHHHHH
Confidence 599999887753 3344 99999999999999999998765 69999999984 7899999999999999
Q ss_pred HHHHHHhcccccC
Q psy9741 118 YLQNVVNFLEKSL 130 (199)
Q Consensus 118 yLq~ll~~~~l~~ 130 (199)
|++.+..||.+.+
T Consensus 230 ~~~~~~~hp~lsn 242 (524)
T COG5391 230 FLRRVSTHPLLSN 242 (524)
T ss_pred HHHHHhcCccccc
Confidence 9999999998775
No 72
>KOG3784|consensus
Probab=98.80 E-value=1.1e-08 Score=90.79 Aligned_cols=86 Identities=31% Similarity=0.401 Sum_probs=75.8
Q ss_pred CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCC-CCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhcccccC
Q psy9741 52 KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSL-NKDLLPPKKVLRNLDPTFLEKRKTDLEIYLQNVVNFLEKSL 130 (199)
Q Consensus 52 ~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~-~~p~LP~K~~~~~~~~~~ie~Rr~~Le~yLq~ll~~~~l~~ 130 (199)
.|+.|.|++.. ......|||++..||..|+..+.. ..|.+|+|+.| .+++.-+++||.+||+|||.+.+++.++.
T Consensus 16 ~ytaynih~nG---~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f-~L~~~~~~~rr~~leqylqa~~q~~~l~~ 91 (407)
T KOG3784|consen 16 RYTAYNIHING---RQHGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLF-KLTPQQLDSRRRGLEQYLQAVCQDPVLAR 91 (407)
T ss_pred cccceeeeecc---eeEEEEehHHHHhHHHHHHHHhhcccCCCCCccccc-CCChhhhHHHHHHHHHHHHHHhcCccccc
Confidence 49999998873 567789999999999999988644 46999999998 57899999999999999999999999999
Q ss_pred cHHHhcccCCC
Q psy9741 131 PRCLIDFLHLV 141 (199)
Q Consensus 131 ~~~l~~FL~~~ 141 (199)
+..+..||.-.
T Consensus 92 s~~~~~fL~~~ 102 (407)
T KOG3784|consen 92 SELVQKFLMRA 102 (407)
T ss_pred hhhhhHHHHhc
Confidence 99999998643
No 73
>KOG4773|consensus
Probab=98.62 E-value=9.2e-08 Score=83.74 Aligned_cols=146 Identities=17% Similarity=0.195 Sum_probs=109.8
Q ss_pred EEEcceEEe---CCeEEEEEEEEE-CCeEEEEEecchhHHHHHHHHHhhcCCC----------CCCCCCCcccCCCCHHH
Q psy9741 42 THITSYEIK---DKIALYKITVQV-GEVCWSLSHRYSDFVELNDKLVKDHSLN----------KDLLPPKKVLRNLDPTF 107 (199)
Q Consensus 42 V~I~~~~~~---~~~~vY~I~V~~-~~~~w~V~RRYSeF~~Lh~~L~~~~~~~----------~p~LP~K~~~~~~~~~~ 107 (199)
+.|.++++. .+|.+|+|+|+. ++.+..|+|||.||.++|.+|++.++.. .|+||.+.+|+ +..+.
T Consensus 24 ~kvi~~eke~~f~~hFvyVievkw~~~se~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA~v~fd-fkqe~ 102 (386)
T KOG4773|consen 24 AKVIDAEKERSFTSHFVYVIEVKWYGGSEGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPAIVYFD-FKQEI 102 (386)
T ss_pred HHHHhHHHhcccchheEEEEEehhhccccceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcceeEec-hhhhh
Confidence 445555544 248999999985 6789999999999999999999998642 58899999986 56888
Q ss_pred HHHHHHHHHHHHHHHHhccc-ccCcHHHhcccCCCCcchhHHHHhhhhhhhccCcchhccCCcceeeChHHHhhhHHhhh
Q psy9741 108 LEKRKTDLEIYLQNVVNFLE-KSLPRCLIDFLHLVKYDINILLQDFASFCFNEGDKYLSMGNSTHAFNPLQAQLLDSLDR 186 (199)
Q Consensus 108 ie~Rr~~Le~yLq~ll~~~~-l~~~~~l~~FL~~~~~~~~~~~~~la~~~~~~gd~~l~~~~~~~~~~plql~~it~~~~ 186 (199)
.|+|...|+.|...|++.|. ...++.|..|+-+.-+|+..+.+++-+. --+-..|.+++ .+.-+-+-+--+.++.+
T Consensus 103 Ae~r~~~ln~y~e~LlslPi~~l~~p~l~~fffvsp~D~~dVpeai~r~-~Prt~~~ks~~--~skasni~~~~~~q~~~ 179 (386)
T KOG4773|consen 103 AEERIPALNAYCEWLLSLPIGRLGGPGLRPFFFVSPYDSEDVPEAIRRL-RPRTRKWKSDG--VSKASNIVLGMAAQRAE 179 (386)
T ss_pred hhhhhHHHHHHHHHHHhcchhhcCCCCceeeeeeccchHhhhhHHHHhc-Cchhhhccccc--cCccccccchhhhHHHH
Confidence 89999999999999999886 4567899999999999988777776654 33334444433 23333344555557777
Q ss_pred hhhhc
Q psy9741 187 ALLTY 191 (199)
Q Consensus 187 ~l~~~ 191 (199)
++.+|
T Consensus 180 a~~df 184 (386)
T KOG4773|consen 180 ASFDF 184 (386)
T ss_pred hhccC
Confidence 76654
No 74
>KOG2101|consensus
Probab=98.60 E-value=1.4e-07 Score=84.03 Aligned_cols=85 Identities=28% Similarity=0.355 Sum_probs=66.4
Q ss_pred CCeEEEEEEEEECCeE-----EEEEecchhHHHHHHHHHhhc-CCCCCCCCC-------CcccCCCCHHHHHHHHHHHHH
Q psy9741 51 DKIALYKITVQVGEVC-----WSLSHRYSDFVELNDKLVKDH-SLNKDLLPP-------KKVLRNLDPTFLEKRKTDLEI 117 (199)
Q Consensus 51 ~~~~vY~I~V~~~~~~-----w~V~RRYSeF~~Lh~~L~~~~-~~~~p~LP~-------K~~~~~~~~~~ie~Rr~~Le~ 117 (199)
.+|++|.+.|...+.. |.|+|||+||..||.+|++.+ +....+.|. +...++++..++..|+..++.
T Consensus 133 ~~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 212 (362)
T KOG2101|consen 133 KSFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKRQFNPALRFPGPKFRNEIQKKKLLGNFDADVIPERSEALEE 212 (362)
T ss_pred cceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHHhcCccccCCCccchhHHHHHHhhccchhhhhhhhhhhHHH
Confidence 4699999999975544 999999999999999999999 555333333 335678899999999999999
Q ss_pred HH--HHHHhcccccCcHHHh
Q psy9741 118 YL--QNVVNFLEKSLPRCLI 135 (199)
Q Consensus 118 yL--q~ll~~~~l~~~~~l~ 135 (199)
|| +....++...++..+.
T Consensus 213 fl~~~f~~~~~~~~~~~~~~ 232 (362)
T KOG2101|consen 213 FLSLQFKDSKPSNVNCKKVM 232 (362)
T ss_pred HHHhhhhhccccccchHHhh
Confidence 99 7766665555554333
No 75
>KOG0905|consensus
Probab=98.59 E-value=1.2e-07 Score=93.22 Aligned_cols=110 Identities=22% Similarity=0.246 Sum_probs=92.7
Q ss_pred hccCCCceEEEEcceEEe---CCeEEEEEEEEECC--eEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCC-CH
Q psy9741 33 LYSNNSKINTHITSYEIK---DKIALYKITVQVGE--VCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNL-DP 105 (199)
Q Consensus 33 ~~~~~~~~~V~I~~~~~~---~~~~vY~I~V~~~~--~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~-~~ 105 (199)
+.+...-..|+|..+++. +++..|.|+|...+ ..-.+.|-|.||.+||++|+..|+.. .|.||..-..|+. -.
T Consensus 1369 ~~sdgRi~~v~v~~f~K~~~pnK~YmYvveV~r~n~~e~s~i~RsF~EF~ElH~KL~~~Fp~~~Lp~fP~~~~~grsnik 1448 (1639)
T KOG0905|consen 1369 LNSDGRISEVTVLKFEKHYSPNKIYMYVVEVTRENQAEPSFIFRSFEEFQELHNKLRARFPSMKLPSFPHRIHLGRSNIK 1448 (1639)
T ss_pred eccCCceEEEEEEEeeeeccCCceEEEEEEEEecCCCCchHHHHhHHHHHHHHHHHHHhCccccCCCCCceeeecccchh
Confidence 345566678999999998 56999999999743 46778999999999999999999887 4778888777764 56
Q ss_pred HHHHHHHHHHHHHHHHHHhc-ccccCcHHHhcccCCCC
Q psy9741 106 TFLEKRKTDLEIYLQNVVNF-LEKSLPRCLIDFLHLVK 142 (199)
Q Consensus 106 ~~ie~Rr~~Le~yLq~ll~~-~~l~~~~~l~~FL~~~~ 142 (199)
.+.++|...|+.||+.|++. +.++.++.+..|+..-.
T Consensus 1449 aVA~kR~~~ln~yl~~L~nas~EVa~cDlVyTFFhpll 1486 (1639)
T KOG0905|consen 1449 AVAEKRIIELNKYLISLFNASDEVAHCDLVYTFFHPLL 1486 (1639)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhhccceeeeeechhh
Confidence 78899999999999999995 67999999999998643
No 76
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=98.09 E-value=3.7e-05 Score=57.37 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=61.7
Q ss_pred CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhh-----cCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhcc
Q psy9741 52 KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKD-----HSLNKDLLPPKKVLRNLDPTFLEKRKTDLEIYLQNVVNFL 126 (199)
Q Consensus 52 ~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~-----~~~~~p~LP~K~~~~~~~~~~ie~Rr~~Le~yLq~ll~~~ 126 (199)
+-++|.|.|.+.+..|.|.|+|-||..|.+.|..- |.. ...||++... ...++.+ ...|..||..+....
T Consensus 26 ~e~~~~v~v~Cqgrsw~VkRSyEdfr~LD~~LHrCvyDRrfS~-L~eLp~~~~l-~~~~~~v---~~~l~~YL~RlS~Ia 100 (115)
T cd07298 26 KELVYLVQIACQGRSWIVKRSYEDFRVLDKHLHLCIYDRRFSQ-LPELPRSDSL-KDSPESV---TQMLMAYLSRLSAIA 100 (115)
T ss_pred CCeEEEEEEEeCCCceEEEeeHHHHHHHHHHHHHHHHhhhhhc-cccCCCcccc-cccHHHH---HHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999998875 222 5678886543 2345555 568899999888743
Q ss_pred -cccCcHHHhcccC
Q psy9741 127 -EKSLPRCLIDFLH 139 (199)
Q Consensus 127 -~l~~~~~l~~FL~ 139 (199)
...++-.+..||+
T Consensus 101 ~~~~nCGPvLtWle 114 (115)
T cd07298 101 GNKINCGPALTWME 114 (115)
T ss_pred hCCccchhcceeee
Confidence 3445555666665
No 77
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=97.91 E-value=0.00015 Score=53.93 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=67.8
Q ss_pred CCceEEEEcceEEe------CCeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhh-cCCC---CCCCCCCcccCCCCHH
Q psy9741 37 NSKINTHITSYEIK------DKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKD-HSLN---KDLLPPKKVLRNLDPT 106 (199)
Q Consensus 37 ~~~~~V~I~~~~~~------~~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~-~~~~---~p~LP~K~~~~~~~~~ 106 (199)
.+.+++.+.+-+.. ++-++|.|.|...+..|.|.|.|-+|..|.+.|..- |... ...||+.-..+ ..++
T Consensus 4 ~G~iQ~~l~~~~~~~~~~~~~k~~~~~v~V~cqg~sW~VkRSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~~~-~~~~ 82 (114)
T cd07278 4 IGSLQVVLSDDGSLKSYKNSGKELVYLVQVQCQGKSWLVKRSYDDFRMLDKHLHQCIYDRKFSQLTELPEECIEK-REQQ 82 (114)
T ss_pred ccceEEEeccCcccCCCCCCCCceEEEEEEEeCCcceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCcccccc-chHH
Confidence 34566666554433 358999999999999999999999999999988875 2221 35677643211 1223
Q ss_pred HHHHHHHHHHHHHHHHHhcc-cccCcHHHhcccCC
Q psy9741 107 FLEKRKTDLEIYLQNVVNFL-EKSLPRCLIDFLHL 140 (199)
Q Consensus 107 ~ie~Rr~~Le~yLq~ll~~~-~l~~~~~l~~FL~~ 140 (199)
.=...|..||..+.... ...++-.+..||++
T Consensus 83 ---~~~~~l~~YL~RlS~Ia~~~inCGPvLtWlei 114 (114)
T cd07278 83 ---NLHQVLSDYLKRLSSIAGNLLNCGPVLNWLEL 114 (114)
T ss_pred ---HHHHHHHHHHHHHHHHhcCcccchhcceeeeC
Confidence 33568899999888753 34556666667653
No 78
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=97.80 E-value=0.00016 Score=53.60 Aligned_cols=85 Identities=16% Similarity=0.252 Sum_probs=59.0
Q ss_pred CCeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhh-cCC---CCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhcc
Q psy9741 51 DKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKD-HSL---NKDLLPPKKVLRNLDPTFLEKRKTDLEIYLQNVVNFL 126 (199)
Q Consensus 51 ~~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~-~~~---~~p~LP~K~~~~~~~~~~ie~Rr~~Le~yLq~ll~~~ 126 (199)
++-++|.|.|...+..|.|.|.|-||..|.+.|..- |.. ....||+---.+. .. +.=...|..||..+....
T Consensus 23 ~k~~~flv~V~cqgrsW~v~RSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~l~~-~~---~~~~~~l~~YL~RlS~Ia 98 (113)
T cd07299 23 EKDLVFLVQVTCQGRSWMVLRSYEDFRTLDAHLHRCIFDRRFSQLLELPPLCEIGD-RL---QILTPLLSEYLNRLTGIV 98 (113)
T ss_pred CCceEEEEEEEecCcceEEeeeHHHHHHHHHHHHHHHHhhhhhhhhccCccccccc-hH---HHHHHHHHHHHHHHHHHh
Confidence 358999999999999999999999999999988864 221 1356666532221 12 223567899999888742
Q ss_pred -cccCcHHHhcccC
Q psy9741 127 -EKSLPRCLIDFLH 139 (199)
Q Consensus 127 -~l~~~~~l~~FL~ 139 (199)
...++-.+..|++
T Consensus 99 ~~~inCGPVLtWme 112 (113)
T cd07299 99 DSNLNCGPVLTWME 112 (113)
T ss_pred cCCccccccceeee
Confidence 3445555666665
No 79
>PLN02866 phospholipase D
Probab=95.09 E-value=0.11 Score=52.34 Aligned_cols=107 Identities=19% Similarity=0.295 Sum_probs=73.8
Q ss_pred CceEEEEcceEEeC--C-eEEEEEEEEECCeEEEEEecchhHHHHHHHHHhh-------------------cCCC-----
Q psy9741 38 SKINTHITSYEIKD--K-IALYKITVQVGEVCWSLSHRYSDFVELNDKLVKD-------------------HSLN----- 90 (199)
Q Consensus 38 ~~~~V~I~~~~~~~--~-~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~-------------------~~~~----- 90 (199)
...-|+|...+..+ . --.|+|+++.....|.+.|.-|+-.-||-.|++. .|+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (1068)
T PLN02866 14 KATIVSVSRPDAGDISPVLLSYTIELQYKQFKWTLYKKASQVLYLHFALKKRAFIEELHEKQEQVKEWLQNLGIGDHPAV 93 (1068)
T ss_pred cceEEEEecCCCCCCCceEEEEEEEEEEeeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccc
Confidence 33445554444332 1 6789999999899999999999988888777652 1110
Q ss_pred -----------CC----------CCCCCcc-------cCCCCHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCCCC
Q psy9741 91 -----------KD----------LLPPKKV-------LRNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLVK 142 (199)
Q Consensus 91 -----------~p----------~LP~K~~-------~~~~~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~~ 142 (199)
.| ..|+... +|+ .+.+...++.+||+||+.++.+..+.++..+..||++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~yL~~~l~~~~~~n~~~~~~FlevS~ 172 (1068)
T PLN02866 94 VQDDDEPDDGTVPLHHDESAKNRDVPSSAALPVIRPALGR-QQSISDRAKVAMQEYLNHFLGNLDIVNSREVCKFLEVSK 172 (1068)
T ss_pred cccccccccccccccchhhcccCCCcchhhcceeccccCC-CccccHHHHHHHHHHHHHHhccchhcCCHhhhhheeece
Confidence 00 1222111 222 445566677779999999999999999999999999987
Q ss_pred cch
Q psy9741 143 YDI 145 (199)
Q Consensus 143 ~~~ 145 (199)
..+
T Consensus 173 lsf 175 (1068)
T PLN02866 173 LSF 175 (1068)
T ss_pred eee
Confidence 764
No 80
>KOG1660|consensus
Probab=92.61 E-value=0.23 Score=44.24 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=70.5
Q ss_pred ceEEEEcceEEeCCeEEEEEEEEEC----CeEEEEEecchhHHHHHHHHHhh---cCCCCCCCCCCcccC----------
Q psy9741 39 KINTHITSYEIKDKIALYKITVQVG----EVCWSLSHRYSDFVELNDKLVKD---HSLNKDLLPPKKVLR---------- 101 (199)
Q Consensus 39 ~~~V~I~~~~~~~~~~vY~I~V~~~----~~~w~V~RRYSeF~~Lh~~L~~~---~~~~~p~LP~K~~~~---------- 101 (199)
.+.+.|.+.-...+-+-|++.+.+. ..+..|.|---+|.|||..+... -|...|+-|++.-|-
T Consensus 25 s~~~eis~a~se~~kvK~tv~t~t~lp~~~~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp~p~~p~fda~reklQkLG 104 (399)
T KOG1660|consen 25 SLLVEISDALSEIGKVKFTVHTRTTLPLFMPEFSVVRQHEEFVWLHDTIEENEDYAGVIIPPAPPRPDFDASREKLQKLG 104 (399)
T ss_pred ceeeeechhhhhcccceeeEEEeeeccCCCCccceeeeecceeeeeehhhhccCcCceecCCCCCCCCCCCChHHHHHhc
Confidence 3445555544444667777777753 35677889999999999998875 255567777665431
Q ss_pred ----CCCHHHHHHHHHHHH---------------HHHHHHHhcccccCcHHHhcccCCC
Q psy9741 102 ----NLDPTFLEKRKTDLE---------------IYLQNVVNFLEKSLPRCLIDFLHLV 141 (199)
Q Consensus 102 ----~~~~~~ie~Rr~~Le---------------~yLq~ll~~~~l~~~~~l~~FL~~~ 141 (199)
++..+-.-+-+..|| .||+.|..||.++.+..+.-||+.+
T Consensus 105 eGe~~mTkEEf~KmK~elEaeyLA~fKKTvamhEvfl~RlaahPvlr~d~nf~vflEy~ 163 (399)
T KOG1660|consen 105 EGEGWMTKEEFLKMKQELEAEYLARFKKTVAMHEVFLRRLAAHPVLRLDQNFSVFLEYD 163 (399)
T ss_pred CCcccccHHHHHHHHHHhhhHHHHHHHHhhccHHHHHHHHhcCCeeecccchhhhhhhc
Confidence 222222223344443 7999999999999999999999987
No 81
>KOG1329|consensus
Probab=73.41 E-value=4.1 Score=40.56 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=64.1
Q ss_pred eEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhc-CCC---------------CCCCCCCcccCCCCHHHHHHHHHHHH
Q psy9741 53 IALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDH-SLN---------------KDLLPPKKVLRNLDPTFLEKRKTDLE 116 (199)
Q Consensus 53 ~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~-~~~---------------~p~LP~K~~~~~~~~~~ie~Rr~~Le 116 (199)
-..|+++...+...|.|.+-+..|..+|-.|...- +.. .|..|.....+ .-+++..+|
T Consensus 66 ~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~------~~~~~~~~e 139 (887)
T KOG1329|consen 66 SGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLNS------SMEKRKTLE 139 (887)
T ss_pred CcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCccc------chhhhhhcc
Confidence 57899999999999999999999999999986531 111 12222222211 145566799
Q ss_pred HHHHHHHhcccccCcHHHhcccCCCCcc
Q psy9741 117 IYLQNVVNFLEKSLPRCLIDFLHLVKYD 144 (199)
Q Consensus 117 ~yLq~ll~~~~l~~~~~l~~FL~~~~~~ 144 (199)
.||.-++..+.++....+.+||+.....
T Consensus 140 ~Ylt~~l~~~~~~~t~~~~~f~e~s~~~ 167 (887)
T KOG1329|consen 140 NYLTVVLHKARYRRTHVIYEFLENSRWS 167 (887)
T ss_pred chheeeechhhhhchhhhhcccccchhh
Confidence 9999999999999999999998876554
No 82
>PF14980 TIP39: TIP39 peptide
Probab=42.73 E-value=26 Score=22.32 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHh
Q psy9741 109 EKRKTDLEIYLQNVVN 124 (199)
Q Consensus 109 e~Rr~~Le~yLq~ll~ 124 (199)
-+||+-|+.|+|.|+-
T Consensus 33 mER~~WLnSYMqkLLv 48 (51)
T PF14980_consen 33 MERQKWLNSYMQKLLV 48 (51)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3688999999999874
No 83
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=29.53 E-value=61 Score=20.60 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhcc
Q psy9741 109 EKRKTDLEIYLQNVVNFL 126 (199)
Q Consensus 109 e~Rr~~Le~yLq~ll~~~ 126 (199)
..|-+.|+.|+..|+..-
T Consensus 20 ~~~v~eLe~YiD~LL~rV 37 (48)
T PF09457_consen 20 DSRVRELEDYIDNLLVRV 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456778999999999743
No 84
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=25.41 E-value=57 Score=18.28 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q psy9741 110 KRKTDLEIYLQN 121 (199)
Q Consensus 110 ~Rr~~Le~yLq~ 121 (199)
.|+..|+.||+.
T Consensus 3 aRK~SLqRFLeK 14 (27)
T PF09425_consen 3 ARKASLQRFLEK 14 (27)
T ss_dssp ---HHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 356667777664
No 85
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=22.91 E-value=1.4e+02 Score=23.65 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=27.6
Q ss_pred EEEEEEEEECCeEEEEEecc-----hhHHHHHHHHHhhcCCC
Q psy9741 54 ALYKITVQVGEVCWSLSHRY-----SDFVELNDKLVKDHSLN 90 (199)
Q Consensus 54 ~vY~I~V~~~~~~w~V~RRY-----SeF~~Lh~~L~~~~~~~ 90 (199)
.+|++.|+..+..=.||||. ..|..||..|...++..
T Consensus 3 ~~y~lkV~L~~~~p~iwRri~Vp~~~tl~~Lh~~Iq~afgw~ 44 (179)
T PF07929_consen 3 KVYQLKVSLKGSKPPIWRRIEVPADITLADLHEVIQAAFGWD 44 (179)
T ss_dssp EEEEEEEEETT-SS-EEEEEEEETT-BHHHHHHHHHHHTT--
T ss_pred eEEEEEEEEcCCCCCeEEEEEECCCCCHHHHHHHHHHHhCcC
Confidence 47999999877677788887 46999999999988654
Done!