Query psy9741
Match_columns 199
No_of_seqs 212 out of 1199
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 18:22:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p0c_A Nischarin; structural g 99.9 6.2E-28 2.1E-32 185.0 8.4 109 39-147 22-130 (130)
2 1xte_A Serine/threonine-protei 99.9 7.4E-26 2.5E-30 178.0 12.5 108 37-144 5-117 (154)
3 2v14_A Kinesin-like motor prot 99.9 2.2E-25 7.5E-30 171.6 12.1 112 37-148 3-122 (134)
4 2csk_A Sorting nexin 12; SNX12 99.9 8.2E-25 2.8E-29 170.4 11.6 108 37-144 8-133 (146)
5 1kmd_A VAM7P, vacuolar morphog 99.9 1.9E-25 6.6E-30 167.9 7.2 102 38-143 4-116 (117)
6 4az9_A Sorting nexin-24; prote 99.9 2.9E-24 1E-28 164.4 13.5 104 37-144 20-128 (129)
7 1h6h_A Neutrophil cytosol fact 99.9 1.7E-24 5.9E-29 167.8 11.2 110 36-146 17-140 (143)
8 3iq2_A Sorting nexin-7; SNX7, 99.9 3.1E-24 1.1E-28 165.9 12.4 110 35-144 4-127 (138)
9 1ocs_A Sorting nexin GRD19; so 99.9 4.5E-24 1.5E-28 169.2 12.3 110 35-144 31-161 (162)
10 3lui_A Sorting nexin-17, SNX17 99.9 8.2E-25 2.8E-29 164.1 6.9 103 38-144 2-111 (115)
11 2ett_A Sorting nexin-22; PX do 99.9 2E-24 6.9E-29 165.1 7.0 100 42-145 21-120 (128)
12 2i4k_A Sorting nexin-1, SNX1; 99.9 9.6E-25 3.3E-29 165.6 2.0 103 39-141 3-127 (128)
13 2ar5_A Phosphoinositide 3-kina 99.9 6.6E-23 2.3E-27 155.0 11.4 107 37-143 3-117 (121)
14 1kq6_A NCF-1, P47PHOX, neutrop 99.9 1.4E-22 4.9E-27 156.9 12.5 109 37-147 4-127 (141)
15 2iwl_X Phosphatidylinositol-4- 99.9 6.1E-23 2.1E-27 158.9 7.3 111 35-145 16-134 (140)
16 2v6v_A BUD emergence protein 1 99.9 2.6E-21 8.9E-26 152.5 14.3 110 35-146 14-140 (156)
17 3hpc_X SNX5 protein; sprting n 99.8 6.9E-21 2.4E-25 150.8 11.2 108 35-142 7-151 (161)
18 4akv_A Sorting nexin-33; trans 99.8 4.6E-21 1.6E-25 170.5 7.4 109 32-142 34-149 (386)
19 3dyt_A Sorting nexin-9; 3-heli 99.8 3.3E-21 1.1E-25 170.3 6.2 109 32-142 13-129 (366)
20 2l73_A NADPH oxidase organizer 99.8 1.8E-20 6E-25 146.7 8.8 108 39-146 8-132 (149)
21 2dyb_A Neutrophil cytosol fact 99.8 3.3E-18 1.1E-22 149.5 11.8 112 35-147 19-144 (341)
22 2wwe_A Phosphoinositide-3-kina 99.8 1.5E-18 5.1E-23 131.4 7.8 104 34-140 20-126 (127)
23 3ogl_Q JAZ1 incomplete degron 35.2 24 0.00083 17.8 1.8 12 110-121 5-16 (21)
24 3ogk_Q JAZ1 incomplete degron 25.6 24 0.00081 18.1 0.8 7 107-113 8-14 (22)
25 3tso_C RAB11 family-interactin 21.7 50 0.0017 22.1 2.0 27 109-135 34-60 (75)
No 1
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=99.95 E-value=6.2e-28 Score=185.01 Aligned_cols=109 Identities=39% Similarity=0.720 Sum_probs=99.8
Q ss_pred ceEEEEcceEEeCCeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCCCCCCCCCcccCCCCHHHHHHHHHHHHHH
Q psy9741 39 KINTHITSYEIKDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVLRNLDPTFLEKRKTDLEIY 118 (199)
Q Consensus 39 ~~~V~I~~~~~~~~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~~p~LP~K~~~~~~~~~~ie~Rr~~Le~y 118 (199)
...|+|.+.+..++|++|.|+|+.++..|.|+||||||.+||++|++.++...|+||+|+++|++++++||+||.+||.|
T Consensus 22 s~~v~I~~~~~~~~y~~Y~I~v~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~p~lP~K~~~g~~~~~~ie~Rr~~Le~y 101 (130)
T 3p0c_A 22 SMEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKLVAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVY 101 (130)
T ss_dssp CCEEEEEEEECSSSSCEEEEEEECSSCEEEEEEEHHHHHHHHHHHHHTTSSCTTSCCCCCCCSCCCSCSHHHHHHHHHHH
T ss_pred eeEEEEEeccccCCEEEEEEEEEECCeEEEEEehHHHHHHHHHHHHHHcCCCCCCCCCccccccCCHHHHHHHHHHHHHH
Confidence 34577777777788999999999988999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHhcccccCcHHHhcccCCCCcchhH
Q psy9741 119 LQNVVNFLEKSLPRCLIDFLHLVKYDINI 147 (199)
Q Consensus 119 Lq~ll~~~~l~~~~~l~~FL~~~~~~~~~ 147 (199)
|+.|+++|.+..++.+..||+.+++++++
T Consensus 102 L~~l~~~p~l~~s~~l~~FL~~~~~~~~~ 130 (130)
T 3p0c_A 102 LQKLLAAFPGVTPRVLAHFLHFHFYEING 130 (130)
T ss_dssp HHHHHHTSCSEECHHHHHHHHSCTTC---
T ss_pred HHHHHcChhhhcCHHHHHHhCCCcccccC
Confidence 99999999999999999999999998753
No 2
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=99.93 E-value=7.4e-26 Score=177.97 Aligned_cols=108 Identities=27% Similarity=0.464 Sum_probs=99.9
Q ss_pred CCceEEEEcceEEeC----CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCCCCCCCCCcccC-CCCHHHHHHH
Q psy9741 37 NSKINTHITSYEIKD----KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVLR-NLDPTFLEKR 111 (199)
Q Consensus 37 ~~~~~V~I~~~~~~~----~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~~p~LP~K~~~~-~~~~~~ie~R 111 (199)
...++|+|++++.+. +|++|.|+|+.++..|.|+||||||.+||++|++.++...++||+|+++| ++++++||+|
T Consensus 5 ~~~~~v~I~~~~~~~~~~~~~~~Y~I~v~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~plP~K~~~g~~~~~~~ie~R 84 (154)
T 1xte_A 5 ESCPSVSIPSSDEHREKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPDFIKQR 84 (154)
T ss_dssp CCCCEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCCCSCCSSCTTCHHHHHHH
T ss_pred CCCCEEEECCcEEEecCCCCEEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHHHCCCCcccCCCccccCCCCCHHHHHHH
Confidence 455789999999874 49999999999999999999999999999999999987667799999999 8999999999
Q ss_pred HHHHHHHHHHHHhcccccCcHHHhcccCCCCcc
Q psy9741 112 KTDLEIYLQNVVNFLEKSLPRCLIDFLHLVKYD 144 (199)
Q Consensus 112 r~~Le~yLq~ll~~~~l~~~~~l~~FL~~~~~~ 144 (199)
|.+||.||+.|+.++.+..++.+..||+.+...
T Consensus 85 r~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~~ 117 (154)
T 1xte_A 85 RAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPR 117 (154)
T ss_dssp HHHHHHHHHHHTTCHHHHTSHHHHHHTTTTCGG
T ss_pred HHHHHHHHHHHHcChhhccChHHHHHhCCCCCc
Confidence 999999999999999999999999999987664
No 3
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=99.93 E-value=2.2e-25 Score=171.58 Aligned_cols=112 Identities=24% Similarity=0.365 Sum_probs=96.0
Q ss_pred CCceEEEEcceEEeC----CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCCHHHHHHH
Q psy9741 37 NSKINTHITSYEIKD----KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLDPTFLEKR 111 (199)
Q Consensus 37 ~~~~~V~I~~~~~~~----~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~~~~ie~R 111 (199)
...+.|+|++++..+ +|++|.|.|+.++..|.|+||||||.+||++|.+.++.. .|+||+|+++|++++++||+|
T Consensus 3 ~~~i~VsIp~~~~~~~~~~~~~~Y~I~v~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP~K~~~~~~~~~~ie~R 82 (134)
T 2v14_A 3 KDPIKISIPRYVLCGQGKDAHFEFEVKITVLDETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLFGNKDERVIAER 82 (134)
T ss_dssp SSCEEEEEEEEEEESSTTSCEEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCCCCCSSCTTSHHHHHHH
T ss_pred CCCEEEEECcEEEEecCCCCEEEEEEEEEECCeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCcCCccccCCCHHHHHHH
Confidence 357899999999983 599999999999999999999999999999999999764 699999999999999999999
Q ss_pred HHHHHHHHHHHHhccc-ccCcHHHhc--ccCCCCcchhHH
Q psy9741 112 KTDLEIYLQNVVNFLE-KSLPRCLID--FLHLVKYDINIL 148 (199)
Q Consensus 112 r~~Le~yLq~ll~~~~-l~~~~~l~~--FL~~~~~~~~~~ 148 (199)
|.+||.||+.|++++. +..++.+.. +++.++.+...+
T Consensus 83 r~~Le~yL~~ll~~~~~l~~sp~~l~~~~~~~~k~~~~~~ 122 (134)
T 2v14_A 83 RSHLEKYLRDFFSVMLQSATSPLHINKVGLTLSKHTICEF 122 (134)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSTTCTTSTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhChHhhcCCHHHHccccCCccHHHHHHH
Confidence 9999999999999986 777775432 356554444333
No 4
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=8.2e-25 Score=170.39 Aligned_cols=108 Identities=22% Similarity=0.363 Sum_probs=97.7
Q ss_pred CCceEEEEcceEEeC----CeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcCCCCCCCCCCccc-------
Q psy9741 37 NSKINTHITSYEIKD----KIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVL------- 100 (199)
Q Consensus 37 ~~~~~V~I~~~~~~~----~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~~~~p~LP~K~~~------- 100 (199)
...+.|+|.+++.+. .|++|.|+|++. ...|.|+||||||.+||+.|.+..+...|+||+|+++
T Consensus 8 ~~~l~i~V~dp~~~~~g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~iP~lP~K~~~~~~~~~~ 87 (146)
T 2csk_A 8 SNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRG 87 (146)
T ss_dssp SCCCEEEEEEEEEESSSSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSSSSCCCCCCSCCCCCCSSTTCC
T ss_pred CCcEEEEEcCceEecCCCCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhccCCcCCCCCCCchhhcccccc
Confidence 456789999998874 399999999874 5799999999999999999998866678999999998
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCCCCcc
Q psy9741 101 --RNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLVKYD 144 (199)
Q Consensus 101 --~~~~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~~~~ 144 (199)
|++++++||+||.+||.||+.|++||.+..++.+..||+.+.++
T Consensus 88 ~~g~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~ 133 (146)
T 2csk_A 88 DEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAID 133 (146)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHTTCSSCC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCcHHHhhcCCCchh
Confidence 67899999999999999999999999999999999999988765
No 5
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=99.92 E-value=1.9e-25 Score=167.89 Aligned_cols=102 Identities=27% Similarity=0.378 Sum_probs=93.3
Q ss_pred CceEEEEcceEEeCCeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCCCC-CCCCCccc-------CCCCHHHHH
Q psy9741 38 SKINTHITSYEIKDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKD-LLPPKKVL-------RNLDPTFLE 109 (199)
Q Consensus 38 ~~~~V~I~~~~~~~~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~~p-~LP~K~~~-------~~~~~~~ie 109 (199)
..++|+|++++..++|++|.|+| ..|.|+||||||.+||++|.+.++...| +||+|+++ |++++++||
T Consensus 4 ~~~~v~I~~~~~~~~~~~Y~I~v----~~~~V~RRYsdF~~L~~~L~~~~~~~~P~~lP~K~~~~~~~~~~~~~~~~~ie 79 (117)
T 1kmd_A 4 EKLRIKVDDVKINPKYVLYGVST----PNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYDDPEMID 79 (117)
T ss_dssp CCCCCEEEEEEECSSCEEEEEEC----SSCCEEECHHHHHHHHHHHHHHHCSCCCCCCCCCCCSSCSTTCCCTTCHHHHH
T ss_pred CCEEEEECCceecCCEEEEEEEE----ceEEEEechHHHHHHHHHHHHHcCccCCCCCCCCCEecccccccCCCCHHHHH
Confidence 56889999999977899999999 4999999999999999999999997778 99999996 688999999
Q ss_pred HHHHHHHHHHHHHHhccc---ccCcHHHhcccCCCCc
Q psy9741 110 KRKTDLEIYLQNVVNFLE---KSLPRCLIDFLHLVKY 143 (199)
Q Consensus 110 ~Rr~~Le~yLq~ll~~~~---l~~~~~l~~FL~~~~~ 143 (199)
+||.+||.||+.|+++|. ++.++.+.+||+.+..
T Consensus 80 ~Rr~~Le~yL~~l~~~p~l~~~~~s~~l~~FL~~~~~ 116 (117)
T 1kmd_A 80 ERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSKP 116 (117)
T ss_dssp HHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHhCcchhhhhcCHHHHHhcCCCCC
Confidence 999999999999999985 4789999999998653
No 6
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=99.92 E-value=2.9e-24 Score=164.44 Aligned_cols=104 Identities=31% Similarity=0.475 Sum_probs=89.4
Q ss_pred CCceEEEEcceEEeC-----CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCCCCCCCCCcccCCCCHHHHHHH
Q psy9741 37 NSKINTHITSYEIKD-----KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVLRNLDPTFLEKR 111 (199)
Q Consensus 37 ~~~~~V~I~~~~~~~-----~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~~p~LP~K~~~~~~~~~~ie~R 111 (199)
...+.|+|+++...+ +|++|.|+|+.++..|.|+||||||.+||++|++.++ .|+||+|. ++++++++||+|
T Consensus 20 ~~~~~V~Ip~~~~~~~~~~k~y~vY~I~v~~~~~~w~V~RRYsdF~~L~~~L~~~~~--~p~lP~K~-~~~~~~~~ie~R 96 (129)
T 4az9_A 20 FQSMEVYIPSFRYEESDLERGYTVFKIEVLMNGRKHFVEKRYSEFHALHKKLKKCIK--TPEIPSKH-VRNWVPKVLEQR 96 (129)
T ss_dssp CCCCEEEEEEEEEECCTTSCCEEEEEEEEEETTEEEEEEEEHHHHHHHHHHHTTTSC--CCCCCCSC-CSCCCHHHHHHH
T ss_pred cceeEEEECcEEEEecCCCCCEEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHHhCC--CCCCCccc-ccCCCHHHHHHH
Confidence 456889999998773 4999999999999999999999999999999998876 46777775 578999999999
Q ss_pred HHHHHHHHHHHHhcccccCcHHHhcccCCCCcc
Q psy9741 112 KTDLEIYLQNVVNFLEKSLPRCLIDFLHLVKYD 144 (199)
Q Consensus 112 r~~Le~yLq~ll~~~~l~~~~~l~~FL~~~~~~ 144 (199)
|.+||.||+.|+.++... ++.+.+||++..++
T Consensus 97 r~~Le~yL~~ll~~~~~~-~~~l~~FL~~~~~p 128 (129)
T 4az9_A 97 RQGLETYLQAVILENEEL-PKLFLDFLNVRHLP 128 (129)
T ss_dssp HHHHHHHHHHHHHHCSSC-CHHHHHHTTC----
T ss_pred HHHHHHHHHHHHhCchhh-CHHHHHHCCCCCCC
Confidence 999999999999998764 78999999987654
No 7
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=99.91 E-value=1.7e-24 Score=167.81 Aligned_cols=110 Identities=21% Similarity=0.299 Sum_probs=98.4
Q ss_pred CCCceEEEEcceEEeC---CeEEEEEEEEE-CCeEEEEEecchhHHHHHHHHHhhcCC---------CCCCCCCCcccCC
Q psy9741 36 NNSKINTHITSYEIKD---KIALYKITVQV-GEVCWSLSHRYSDFVELNDKLVKDHSL---------NKDLLPPKKVLRN 102 (199)
Q Consensus 36 ~~~~~~V~I~~~~~~~---~~~vY~I~V~~-~~~~w~V~RRYSeF~~Lh~~L~~~~~~---------~~p~LP~K~~~~~ 102 (199)
+...++|+|++++... +|++|.|+|+. ++..|.|+||||||.+||++|.+.++. ..|+||+|+++|+
T Consensus 17 ~~~~i~v~I~~~e~~~~~~~~~vY~I~v~~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~K~~~~~ 96 (143)
T 1h6h_A 17 DDVAISANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYVGV 96 (143)
T ss_dssp TTCEEEEEEEEEEEECSSSCEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCCCCSSC
T ss_pred cCCeEEEEEcCccccCCCCCeEEEEEEEEEcCCCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCCCCcccCc
Confidence 3457999999998775 69999999996 478999999999999999999999874 2489999999998
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhccc-ccCcHHHhcccCCCCcchh
Q psy9741 103 LDPTFLEKRKTDLEIYLQNVVNFLE-KSLPRCLIDFLHLVKYDIN 146 (199)
Q Consensus 103 ~~~~~ie~Rr~~Le~yLq~ll~~~~-l~~~~~l~~FL~~~~~~~~ 146 (199)
+++++|+||.+||.||+.|++++. +..++.+..||+....|+.
T Consensus 97 -~~~~ie~Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~~~d~~ 140 (143)
T 1h6h_A 97 -KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDSE 140 (143)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHHHHT
T ss_pred -CHHHHHHHHHHHHHHHHHHHcCCHhhhcCHHHHHHhCCCccccc
Confidence 999999999999999999999987 8999999999998776643
No 8
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=99.91 E-value=3.1e-24 Score=165.95 Aligned_cols=110 Identities=19% Similarity=0.342 Sum_probs=96.1
Q ss_pred cCCCceEEEEcceEEeC----CeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccC---
Q psy9741 35 SNNSKINTHITSYEIKD----KIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLR--- 101 (199)
Q Consensus 35 ~~~~~~~V~I~~~~~~~----~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~--- 101 (199)
.+...+.|+|.+++++. .|++|.|.|++. +..|.|+||||||.+||+.|.+.++.. .|+||+|++++
T Consensus 4 ~d~~~l~i~V~dp~~~~~g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~ 83 (138)
T 3iq2_A 4 PDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMV 83 (138)
T ss_dssp CCCCCCEEEEEEEEEEECSSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----CC
T ss_pred CccceEEEEECCCEEecCCCCCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhcccc
Confidence 45678999999999884 299999999974 578999999999999999999998654 69999999975
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCCCCcc
Q psy9741 102 -NLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLVKYD 144 (199)
Q Consensus 102 -~~~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~~~~ 144 (199)
++++++||+||++||.||+.|+++|.+..++.+..||+.+...
T Consensus 84 ~~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~~~~ 127 (138)
T 3iq2_A 84 ERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWE 127 (138)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHTTCBC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHcCHhhhcChHHHhhhCCCCCC
Confidence 4599999999999999999999999999999999999987664
No 9
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=99.91 E-value=4.5e-24 Score=169.16 Aligned_cols=110 Identities=19% Similarity=0.313 Sum_probs=96.4
Q ss_pred cCCCceEEEEcceEEe---C-----CeEEEEEEEEE-----CCeEEEEEecchhHHHHHHHHHhhc-----C-CCCCCCC
Q psy9741 35 SNNSKINTHITSYEIK---D-----KIALYKITVQV-----GEVCWSLSHRYSDFVELNDKLVKDH-----S-LNKDLLP 95 (199)
Q Consensus 35 ~~~~~~~V~I~~~~~~---~-----~~~vY~I~V~~-----~~~~w~V~RRYSeF~~Lh~~L~~~~-----~-~~~p~LP 95 (199)
.....+.|+|.+++.+ + .|++|.|+|++ .+..|.|+||||||.+||++|.+.+ + ...|+||
T Consensus 31 ~p~~~l~i~V~dp~~~~~~g~~~~~~yv~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP 110 (162)
T 1ocs_A 31 EPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLP 110 (162)
T ss_dssp CSSCCEEEEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCT
T ss_pred CCCCeEEEEEeCCEEeeccCCCCCCCeEEEEEEEEECCCCCCcceeEEEeeHHHHHHHHHHHHHHhccccCCCccCCCCC
Confidence 3345589999999887 3 29999999987 3678999999999999999999987 4 4579999
Q ss_pred CCcccC-CCCHHHHHHHHHHHHHHHHHHHhcccccC-cHHHhcccCCCCcc
Q psy9741 96 PKKVLR-NLDPTFLEKRKTDLEIYLQNVVNFLEKSL-PRCLIDFLHLVKYD 144 (199)
Q Consensus 96 ~K~~~~-~~~~~~ie~Rr~~Le~yLq~ll~~~~l~~-~~~l~~FL~~~~~~ 144 (199)
+|+++| ++++++||+||.+||.||+.|++||.+.. ++.|..||+.++++
T Consensus 111 ~K~~~~~~~~~~fie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FL~~~~~~ 161 (162)
T 1ocs_A 111 GKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEKFV 161 (162)
T ss_dssp TCCCSSCTTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCSSCC
T ss_pred CCcccccCCCHHHHHHHHHHHHHHHHHHHcCHHhhhCCHHHHHhCCCcccC
Confidence 999985 58999999999999999999999999998 89999999987553
No 10
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=99.91 E-value=8.2e-25 Score=164.15 Aligned_cols=103 Identities=26% Similarity=0.383 Sum_probs=90.9
Q ss_pred CceEEEEcceEEeC------CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCCHHHHHH
Q psy9741 38 SKINTHITSYEIKD------KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLDPTFLEK 110 (199)
Q Consensus 38 ~~~~V~I~~~~~~~------~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~~~~ie~ 110 (199)
..++|+|++++... +|++|.|.|. ..|.|+||||||.+||++|.+.++.. .|+||+|++++ +++++||+
T Consensus 2 ~~l~v~Ip~~~~~~~~~g~~~y~~Y~I~v~---~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ie~ 77 (115)
T 3lui_A 2 NAMHFSIPETESRSGDSGGSAYVAYNIHVN---GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFS-LTPAEVEQ 77 (115)
T ss_dssp ---CEEEEEEEEEC-----CCEEEEEEEET---TEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSSC-CCHHHHHH
T ss_pred CcEEEEECCeEEecCCCCCCCEEEEEEEEC---CeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCcccC-CCHHHHHH
Confidence 35789999999884 3999999885 48999999999999999999998765 69999999995 79999999
Q ss_pred HHHHHHHHHHHHHhcccccCcHHHhcccCCCCcc
Q psy9741 111 RKTDLEIYLQNVVNFLEKSLPRCLIDFLHLVKYD 144 (199)
Q Consensus 111 Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~~~~ 144 (199)
||.+||.||+.|+++|.+..++.+..||+.+..+
T Consensus 78 Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~~~ 111 (115)
T 3lui_A 78 RREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQE 111 (115)
T ss_dssp HHHHHHHHHHHHHHSHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhhcChHHHHHHCcCHHh
Confidence 9999999999999999999999999999865544
No 11
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}
Probab=99.90 E-value=2e-24 Score=165.14 Aligned_cols=100 Identities=22% Similarity=0.394 Sum_probs=87.7
Q ss_pred EEEcceEEeCCeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHH
Q psy9741 42 THITSYEIKDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVLRNLDPTFLEKRKTDLEIYLQN 121 (199)
Q Consensus 42 V~I~~~~~~~~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~~p~LP~K~~~~~~~~~~ie~Rr~~Le~yLq~ 121 (199)
|+|++.+..++|++|.|+|+.++..|.|+||||||.+||++|++.++ .|+||+|++ +++++++||+||.+||.||+.
T Consensus 21 v~Ip~~~~~~~~~~Y~I~v~~~~~~~~V~RRYSdF~~Lh~~L~~~~~--iP~lP~K~~-~~~~~~~ie~Rr~~Le~yL~~ 97 (128)
T 2ett_A 21 AEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLYK--VPDFPSKRL-PNWRTRGLEQRRQGLEAYIQG 97 (128)
T ss_dssp CCCCSSCSSCCCCEEEEEEEETTEEEEEEEEHHHHHHHHHHHHTTSS--CCCCCCSSC-CCSSSSCHHHHHHHHHHHHHH
T ss_pred EEeccccCCCCEEEEEEEEEECCcEEEEECCHHHHHHHHHHHHHHCC--CCCCCCCcc-CCCCHHHHHHHHHHHHHHHHH
Confidence 34444443457999999999999999999999999999999999986 589999996 478999999999999999999
Q ss_pred HHhcccccCcHHHhcccCCCCcch
Q psy9741 122 VVNFLEKSLPRCLIDFLHLVKYDI 145 (199)
Q Consensus 122 ll~~~~l~~~~~l~~FL~~~~~~~ 145 (199)
|+.+|.+. ++.+.+||+.+.++.
T Consensus 98 ll~~p~~~-s~~l~~FL~~~~~~~ 120 (128)
T 2ett_A 98 ILYLNQEV-PKELLEFLRLRHFPT 120 (128)
T ss_dssp HHHHSSSS-CHHHHHHHTCTTCCC
T ss_pred HHhCchhc-CHHHHHhcCCccCCC
Confidence 99998776 699999999987763
No 12
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=99.89 E-value=9.6e-25 Score=165.63 Aligned_cols=103 Identities=31% Similarity=0.404 Sum_probs=91.7
Q ss_pred ceEEEEcceEEeC----CeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHhhcCC---CCCCCCCCcccCC----
Q psy9741 39 KINTHITSYEIKD----KIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVKDHSL---NKDLLPPKKVLRN---- 102 (199)
Q Consensus 39 ~~~V~I~~~~~~~----~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~~~~~---~~p~LP~K~~~~~---- 102 (199)
.++|+|++++.++ .|++|.|.|++. +..|.|+||||||.+||++|.+.++. ..|+||+|+++|+
T Consensus 3 ~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~~ 82 (128)
T 2i4k_A 3 DLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVK 82 (128)
T ss_dssp SCCCCBCCCCBCCCSSCCCBCCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSSSSSCC
T ss_pred eEEEEECCceEecCCCcCEEEEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccchhhhh
Confidence 3568888888774 399999999863 57999999999999999999999853 5799999999874
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCCC
Q psy9741 103 ------LDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLV 141 (199)
Q Consensus 103 ------~~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~ 141 (199)
+++++||+||.+||.||+.|+++|.++.++.+..||+.+
T Consensus 83 ~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 83 VGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127 (128)
T ss_dssp CCSCCCSSTTHHHHHHHHHHHHHHHHHHCHHHHCSHHHHTTTTCC
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhCCC
Confidence 489999999999999999999999999999999999875
No 13
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=99.89 E-value=6.6e-23 Score=155.05 Aligned_cols=107 Identities=21% Similarity=0.218 Sum_probs=94.2
Q ss_pred CCceEEEEcceEEeC---CeEEEEEEEEECC--eEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCC-CHHHHH
Q psy9741 37 NSKINTHITSYEIKD---KIALYKITVQVGE--VCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNL-DPTFLE 109 (199)
Q Consensus 37 ~~~~~V~I~~~~~~~---~~~vY~I~V~~~~--~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~-~~~~ie 109 (199)
....+|+|.++++.. ++++|.|+|+..+ ..|.|+||||||.+||++|++.||.. .|+||+|+++|+. +.+++|
T Consensus 3 ~~i~~v~V~~~ek~~~~~k~y~Y~I~v~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~g~~~~~~~~e 82 (121)
T 2ar5_A 3 GRIKEVSVFTYHKKYNPDKHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRTHIKDVAA 82 (121)
T ss_dssp SSEEEEEEEEEECCCSSSSCCEEEEEEEETTCSSCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCSSSSSTTHHHH
T ss_pred CeEEEEEECcEEEEecCCCcEEEEEEEEECCCceeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeecCccCcHHHHH
Confidence 345689999999873 4666999999864 59999999999999999999999875 6899999999976 678999
Q ss_pred HHHHHHHHHHHHHHhc-ccccCcHHHhcccCCCCc
Q psy9741 110 KRKTDLEIYLQNVVNF-LEKSLPRCLIDFLHLVKY 143 (199)
Q Consensus 110 ~Rr~~Le~yLq~ll~~-~~l~~~~~l~~FL~~~~~ 143 (199)
+|+.+||.||+.|++. +.++.++.+..||.+...
T Consensus 83 ~Rr~~Le~yL~~ll~~p~~i~~s~~v~~Ff~~~~~ 117 (121)
T 2ar5_A 83 KRKIELNSYLQSLMNASTDVAECDLVCTFFHGSHH 117 (121)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHTSHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHHhCCchhcCCHHHHHHcCCccc
Confidence 9999999999999996 689999999999998653
No 14
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=99.89 E-value=1.4e-22 Score=156.86 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=95.5
Q ss_pred CCceEEEEcceEEe---CCeEEEEEEEEE-CCeEEEEEecchhHHHHHHHHHhhcCCC----------CCCCCCCcccCC
Q psy9741 37 NSKINTHITSYEIK---DKIALYKITVQV-GEVCWSLSHRYSDFVELNDKLVKDHSLN----------KDLLPPKKVLRN 102 (199)
Q Consensus 37 ~~~~~V~I~~~~~~---~~~~vY~I~V~~-~~~~w~V~RRYSeF~~Lh~~L~~~~~~~----------~p~LP~K~~~~~ 102 (199)
..-.+|.|.+++.. ++|++|.|+|+. ++..|.|+||||||.+||++|.+.|+.. +|+||+|+++|+
T Consensus 4 ~~i~~v~V~~~ek~~~~~~~~~Y~I~V~~~~~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~lP~K~~~~~ 83 (141)
T 1kq6_A 4 TFIRHIALLGFEKRFVPSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDG 83 (141)
T ss_dssp SCEEEEEEEEEEEECSSSCEEEEEEEEEETTCCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCCCCCCCCS
T ss_pred ceEEEEEEccEEEecCCCCeEEEEEEEEEcCCCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCCCCCccccCC
Confidence 34568999999987 358899999997 5779999999999999999999998753 578999999986
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcc-cccCcHHHhcccCCCCcchhH
Q psy9741 103 LDPTFLEKRKTDLEIYLQNVVNFL-EKSLPRCLIDFLHLVKYDINI 147 (199)
Q Consensus 103 ~~~~~ie~Rr~~Le~yLq~ll~~~-~l~~~~~l~~FL~~~~~~~~~ 147 (199)
.+++|+|+.+||.||+.|++++ .++.++.+.+||+....|...
T Consensus 84 --~~~~e~Rr~~Le~YL~~Ll~~p~~i~~s~~v~~Fl~~~~~d~~~ 127 (141)
T 1kq6_A 84 --QRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRPDDLKL 127 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHHHHSC
T ss_pred --HHHHHHHHHHHHHHHHHHHhCCHhhcCChHHHHHhCCCccccCC
Confidence 8999999999999999999976 489999999999988777443
No 15
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=99.88 E-value=6.1e-23 Score=158.88 Aligned_cols=111 Identities=22% Similarity=0.229 Sum_probs=90.3
Q ss_pred cCCCceEEEEcceEEeC---CeEEEEEEEEECC--eEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCC-CHHH
Q psy9741 35 SNNSKINTHITSYEIKD---KIALYKITVQVGE--VCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNL-DPTF 107 (199)
Q Consensus 35 ~~~~~~~V~I~~~~~~~---~~~vY~I~V~~~~--~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~-~~~~ 107 (199)
......+|.|.+++... +|++|.|+|+..+ ..|.|.||||||.+||++|++.||.. .|+||+|+++|+. +.++
T Consensus 16 ~~~~i~~v~I~~~ek~~~~~k~~~Y~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~~~~~~~~~ 95 (140)
T 2iwl_X 16 QDGRIKEVSVFTYHKKYNPDKHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRTHIKDV 95 (140)
T ss_dssp HHCCEEEEEEEEEEECCSSSSCEEEEEEEEETTCSSCEEEEECHHHHHHHHHHHHHHSCGGGSCCCCC----------CC
T ss_pred CCCeeEEEEECcEEEEecCCCeEEEEEEEEECCCceeEEEEeEHHHHHHHHHHHHHHCcCccCCCCCCCeecCccchHHH
Confidence 44667899999999874 5888999999864 48999999999999999999999875 6899999999875 6779
Q ss_pred HHHHHHHHHHHHHHHHh-cccccCcHHHhcccCCCCcch
Q psy9741 108 LEKRKTDLEIYLQNVVN-FLEKSLPRCLIDFLHLVKYDI 145 (199)
Q Consensus 108 ie~Rr~~Le~yLq~ll~-~~~l~~~~~l~~FL~~~~~~~ 145 (199)
+|+|+.+||.||+.|++ ++.++.++.+..||.....|.
T Consensus 96 ~e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~~~D~ 134 (140)
T 2iwl_X 96 AAKRKIELNSYLQSLMNASTDVAECDLVCTFFHPLLRDE 134 (140)
T ss_dssp CCHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHSCCTTTC
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhcCHHHHHHhCCCCCCc
Confidence 99999999999999999 578999999999999866553
No 16
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=99.87 E-value=2.6e-21 Score=152.50 Aligned_cols=110 Identities=17% Similarity=0.305 Sum_probs=97.2
Q ss_pred cCCCceEEEEcceEEeCCeEEEEEEEEE-CCeEEEEEecchhHHHHHHHHHhhcCC---------------CCCCCCCCc
Q psy9741 35 SNNSKINTHITSYEIKDKIALYKITVQV-GEVCWSLSHRYSDFVELNDKLVKDHSL---------------NKDLLPPKK 98 (199)
Q Consensus 35 ~~~~~~~V~I~~~~~~~~~~vY~I~V~~-~~~~w~V~RRYSeF~~Lh~~L~~~~~~---------------~~p~LP~K~ 98 (199)
+...+++|+|+++...+++++|.|.|.. ++..|.|+||||||.+||.+|++.||. .+|.||+|.
T Consensus 14 ~~~~~~~~sI~~~~~~~~~y~Y~I~V~~~d~~~~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~lP~LP~K~ 93 (156)
T 2v6v_A 14 DGELLVKASVESFGLEDEKYWFLVCCELSNGKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIPGPV 93 (156)
T ss_dssp TTCCEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCSCCCCCCC
T ss_pred CCCcceEEEEeeEEEECCEEEEEEEEEEcCCCEEEEEEEhHHHHHHHHHHHHHcchhhcccccccccccccccCCCCCCc
Confidence 4567789999999999998889999998 578999999999999999999999853 247899999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHhc-ccccCcHHHhcccCCCCcchh
Q psy9741 99 VLRNLDPTFLEKRKTDLEIYLQNVVNF-LEKSLPRCLIDFLHLVKYDIN 146 (199)
Q Consensus 99 ~~~~~~~~~ie~Rr~~Le~yLq~ll~~-~~l~~~~~l~~FL~~~~~~~~ 146 (199)
+++ +.+++|+|+.+|+.||+.|++. +.++.++.++.||.....|..
T Consensus 94 ~~~--~~~~~e~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~~D~~ 140 (156)
T 2v6v_A 94 PYV--TNSITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLNNGFD 140 (156)
T ss_dssp SSC--CHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHTTSCCSSSSC
T ss_pred ccC--CHHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCCcccc
Confidence 875 5799999999999999999994 569999999999999877754
No 17
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=99.84 E-value=6.9e-21 Score=150.77 Aligned_cols=108 Identities=20% Similarity=0.260 Sum_probs=93.0
Q ss_pred cCCCceEEEEcceEEeCCeEEEEEEEEEC-----CeEEEEEecchhHHHHHHHHHh--hcC-CCCCCCCCCcccC-----
Q psy9741 35 SNNSKINTHITSYEIKDKIALYKITVQVG-----EVCWSLSHRYSDFVELNDKLVK--DHS-LNKDLLPPKKVLR----- 101 (199)
Q Consensus 35 ~~~~~~~V~I~~~~~~~~~~vY~I~V~~~-----~~~w~V~RRYSeF~~Lh~~L~~--~~~-~~~p~LP~K~~~~----- 101 (199)
+....+.|+|.++....+|+.|.|.+++. +..|.|.||||||.|||+.|.+ .++ ..+|+||+|.+++
T Consensus 7 ~~~~~l~i~V~dp~~~~~~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~~~~~~K 86 (161)
T 3hpc_X 7 NVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREK 86 (161)
T ss_dssp CCSCSEEEEEEEEEEETTEEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCCHHHHHH
T ss_pred CCCCeEEEEECCCeEecCCEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccccchhhh
Confidence 34567999999999999999999999974 5799999999999999999998 554 5579999999874
Q ss_pred ---------C------------CCHHHHHHHHH---HHHHHHHHHHhcccccCcHHHhcccCCCC
Q psy9741 102 ---------N------------LDPTFLEKRKT---DLEIYLQNVVNFLEKSLPRCLIDFLHLVK 142 (199)
Q Consensus 102 ---------~------------~~~~~ie~Rr~---~Le~yLq~ll~~~~l~~~~~l~~FL~~~~ 142 (199)
+ ++++|||+||+ +||.||+.|++||.+..++.+..||+.+.
T Consensus 87 ~~~~g~~~~~~~~e~~~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~ 151 (161)
T 3hpc_X 87 MQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQ 151 (161)
T ss_dssp HHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHCCS
T ss_pred hhcccccccccchhHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHcCCCcccCcHHHhhcCCCc
Confidence 2 24679997654 59999999999999999999999999764
No 18
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=99.83 E-value=4.6e-21 Score=170.51 Aligned_cols=109 Identities=19% Similarity=0.269 Sum_probs=88.3
Q ss_pred hhccCCCceEEEEcceEEeC------CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCC
Q psy9741 32 CLYSNNSKINTHITSYEIKD------KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLD 104 (199)
Q Consensus 32 ~~~~~~~~~~V~I~~~~~~~------~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~ 104 (199)
+|.....++.|+|.+++++. +|++|.|.+++ ..|.|+||||||.+||+.|.+.++.. +|+||+|+++|+++
T Consensus 34 ~w~~~~~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~--~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~g~~~ 111 (386)
T 4akv_A 34 QWKANPHPFACSVEDPTKQTKFKGIKSYISYKLTPTH--AASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQATGRFE 111 (386)
T ss_dssp EECCCSSCCCEEEECC------------CCEEEEETT--SSSCEEECHHHHHHHHHHHHHHCSSSCCCCCCCCC------
T ss_pred eeecCCCCeEEEEcCceEecCCCCCcCeEEEEEEEEe--CCeEEEcCHHHHHHHHHHHHHhCCCCCCCCCCCCcccCCCC
Confidence 35566778999999998863 49999998875 47999999999999999999998754 69999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCCCC
Q psy9741 105 PTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLVK 142 (199)
Q Consensus 105 ~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~~ 142 (199)
++||++||.+||.||+.|+++|.+..++.+..||+.+.
T Consensus 112 ~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~~ 149 (386)
T 4akv_A 112 EDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLD 149 (386)
T ss_dssp CCTTTHHHHHHHHHHHHHHTCTTGGGCHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHHhCCCC
Confidence 99999999999999999999999999999999999864
No 19
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=99.83 E-value=3.3e-21 Score=170.26 Aligned_cols=109 Identities=18% Similarity=0.257 Sum_probs=87.2
Q ss_pred hhccCCCceEEEEcceEEeC------CeEEEEEEEEECCeEEEEEecchhHHHHHHHHHhhcCC--CCCCCCCCcccCCC
Q psy9741 32 CLYSNNSKINTHITSYEIKD------KIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSL--NKDLLPPKKVLRNL 103 (199)
Q Consensus 32 ~~~~~~~~~~V~I~~~~~~~------~~~vY~I~V~~~~~~w~V~RRYSeF~~Lh~~L~~~~~~--~~p~LP~K~~~~~~ 103 (199)
+|......+.|+|.++++++ .|++|.|.+++ ..|.|+||||||.+||+.|...+|. .+|+||+|+++|++
T Consensus 13 ~w~~~~~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~--~~~~V~RRYsdF~~L~~~L~~~~p~~~~iP~lP~K~~~g~~ 90 (366)
T 3dyt_A 13 MWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTN--TNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRF 90 (366)
T ss_dssp EECCCSSCCCEEEECGGGSSSCCCCCSSCEEEEEETT--CSCCEEEEHHHHHHHHHHHHHHHTTTSCCCCCC--------
T ss_pred cccCCCCCeEEEEcCceeecCCCCCcCeEEEEEEEec--CcEEEEeeHHHHHHHHHHHHHhCCCcCcCCCCcCCcccCCC
Confidence 34566778999999987753 59999998874 5899999999999999999999876 46999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcccccCcHHHhcccCCCC
Q psy9741 104 DPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLVK 142 (199)
Q Consensus 104 ~~~~ie~Rr~~Le~yLq~ll~~~~l~~~~~l~~FL~~~~ 142 (199)
+++||++||.+||.||+.|++||.+..++.+..||+.+.
T Consensus 91 ~~~fie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL~~~~ 129 (366)
T 3dyt_A 91 EEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRD 129 (366)
T ss_dssp ---CHHHHHHHHHHHHHHHHTCTTGGGSHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHhhCCCc
Confidence 999999999999999999999999999999999999864
No 20
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-20 Score=146.71 Aligned_cols=108 Identities=11% Similarity=0.099 Sum_probs=92.3
Q ss_pred ceEEEEcceEEe----CCeEEEEEEEEE-CCeEEEEEecchhHHHHHHHHHhhcCC----------CCCCCCCCcccCC-
Q psy9741 39 KINTHITSYEIK----DKIALYKITVQV-GEVCWSLSHRYSDFVELNDKLVKDHSL----------NKDLLPPKKVLRN- 102 (199)
Q Consensus 39 ~~~V~I~~~~~~----~~~~vY~I~V~~-~~~~w~V~RRYSeF~~Lh~~L~~~~~~----------~~p~LP~K~~~~~- 102 (199)
..+|.|.++++. +.|++|.|+|+. ++..|.|+||||||.+||++|++.||. .+|.||+|.++|+
T Consensus 8 ~~~v~v~~~ek~~~~~~~y~~Y~I~V~~~d~~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~lP~k~~~~~~ 87 (149)
T 2l73_A 8 GPRYPVSVQGAALVQIKRLQTFAFSVRWSDGSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLLGRV 87 (149)
T ss_dssp CCCCEEEEEEEEEECCSSSCEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCCCCCCSCCSSC
T ss_pred eeEEEEEeeeEeecCCCceEEEEEEEEEeCCCEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccCCCCCeeeccc
Confidence 346777777775 348889999996 578899999999999999999999873 2578999999986
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcc-cccCcHHHhcccCCCCcchh
Q psy9741 103 LDPTFLEKRKTDLEIYLQNVVNFL-EKSLPRCLIDFLHLVKYDIN 146 (199)
Q Consensus 103 ~~~~~ie~Rr~~Le~yLq~ll~~~-~l~~~~~l~~FL~~~~~~~~ 146 (199)
.+.+++++|+.+|+.||+.|++.+ .+..++.++.||.....|..
T Consensus 88 ~~~~~~e~R~~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~~D~~ 132 (149)
T 2l73_A 88 GRTSRGLARLQLLETYSRRLLATAERVARSPTITGFFAPQPLDLE 132 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCHHHHHSHHHHHHHSCCGGGGS
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCccccC
Confidence 468999999999999999999965 48999999999999877643
No 21
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=149.54 Aligned_cols=112 Identities=21% Similarity=0.294 Sum_probs=97.5
Q ss_pred cCCCceEEEEcceEEeC---CeEEEEEEEEE-CCeEEEEEecchhHHHHHHHHHhhcCCC---------CCCCCCCcccC
Q psy9741 35 SNNSKINTHITSYEIKD---KIALYKITVQV-GEVCWSLSHRYSDFVELNDKLVKDHSLN---------KDLLPPKKVLR 101 (199)
Q Consensus 35 ~~~~~~~V~I~~~~~~~---~~~vY~I~V~~-~~~~w~V~RRYSeF~~Lh~~L~~~~~~~---------~p~LP~K~~~~ 101 (199)
.+...+.|+|+++++.. +|++|.|+|+. ++..|.|+|||+||.+||++|.+.|+.. +|.||+|+++|
T Consensus 19 ~~~~~~~v~I~~~~~~~~~~~~~~Y~i~v~~~~~~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP~k~~~~ 98 (341)
T 2dyb_A 19 PDDVAISANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPAKVYVG 98 (341)
T ss_dssp CTTSEEEEEEEEEEEEESSSEEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCCCCCCCS
T ss_pred CCCCcEEEEECCeEEecCCCcEEEEEEEEEEcCCcEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCCCccccC
Confidence 44567899999998874 49999999995 5789999999999999999999999742 48899999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhccc-ccCcHHHhcccCCCCcchhH
Q psy9741 102 NLDPTFLEKRKTDLEIYLQNVVNFLE-KSLPRCLIDFLHLVKYDINI 147 (199)
Q Consensus 102 ~~~~~~ie~Rr~~Le~yLq~ll~~~~-l~~~~~l~~FL~~~~~~~~~ 147 (199)
+ ..+++++|+..|+.||+.|++.|. +..++.+..||.....+...
T Consensus 99 ~-~~~~~e~R~~~Le~yl~~ll~lp~~i~~~~~v~~Ff~~~~~d~e~ 144 (341)
T 2dyb_A 99 V-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDSEQ 144 (341)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHHSCHHHHTCHHHHHHHSCCHHHHHH
T ss_pred c-cHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccccccc
Confidence 7 678999999999999999999876 89999999999988766443
No 22
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=131.35 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=88.5
Q ss_pred ccCCCceEEEEcceEEeCCeEEEEEEEEE-CCeEEEEEecchhHHHHHHHHHhhcCCC-CCCCCCCcccCCCCHHHHHHH
Q psy9741 34 YSNNSKINTHITSYEIKDKIALYKITVQV-GEVCWSLSHRYSDFVELNDKLVKDHSLN-KDLLPPKKVLRNLDPTFLEKR 111 (199)
Q Consensus 34 ~~~~~~~~V~I~~~~~~~~~~vY~I~V~~-~~~~w~V~RRYSeF~~Lh~~L~~~~~~~-~p~LP~K~~~~~~~~~~ie~R 111 (199)
..+.....|+|.++... ....|.|.|.. ++..|.|.|||+||.+||++|++.||.. .|.||+|++++. ...-++ |
T Consensus 20 ~~~~~i~~~~v~~~~k~-~~~~Yvi~V~~sd~~~~~~~rry~eF~~LH~qLkk~Fp~~~LP~fP~K~ll~~-t~~~~e-R 96 (127)
T 2wwe_A 20 FQSMSIERATILGFSKK-SSNLYLIQVTHSNNETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHLPF-TNSDHR-R 96 (127)
T ss_dssp SCSSSEEEEEEEEEETT-EEEEEEEEEEETTSCEEEEEECHHHHHHHHHHHHHHTTTSCCCCCCCTTSHHH-HHCHHH-H
T ss_pred ecCCcEEEEEEEEEEec-ccEEEEEEEEEeCCCeEEEEEEHHHHHHHHHHHHHhCccccCCCCCCccccCc-CHHHHH-H
Confidence 34566678999999665 56669999997 4789999999999999999999999986 699999998764 233344 9
Q ss_pred HHHHHHHHHHHHh-cccccCcHHHhcccCC
Q psy9741 112 KTDLEIYLQNVVN-FLEKSLPRCLIDFLHL 140 (199)
Q Consensus 112 r~~Le~yLq~ll~-~~~l~~~~~l~~FL~~ 140 (199)
+++||.|||.|++ .+.+++++.+.+||..
T Consensus 97 r~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~~ 126 (127)
T 2wwe_A 97 FRDLNHYMEQILNVSHEVTNSDCVLSFFLS 126 (127)
T ss_dssp HHHHHHHHHHHTTSCHHHHTSHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCceeecCHHHHHHhCC
Confidence 9999999999999 6899999999999864
No 23
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=35.22 E-value=24 Score=17.84 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHH
Q psy9741 110 KRKTDLEIYLQN 121 (199)
Q Consensus 110 ~Rr~~Le~yLq~ 121 (199)
.|+..|+.||+.
T Consensus 5 aRk~SLqRFleK 16 (21)
T 3ogl_Q 5 ARRASLHRFLEK 16 (26)
T ss_pred hHHHHHHHHHHH
Confidence 578888888874
No 24
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=25.63 E-value=24 Score=18.10 Aligned_cols=7 Identities=86% Similarity=1.222 Sum_probs=3.2
Q ss_pred HHHHHHH
Q psy9741 107 FLEKRKT 113 (199)
Q Consensus 107 ~ie~Rr~ 113 (199)
|+|+|+.
T Consensus 8 FleKRk~ 14 (22)
T 3ogk_Q 8 FLEKRKD 14 (26)
T ss_pred HHHHHHH
Confidence 4444443
No 25
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=21.75 E-value=50 Score=22.08 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhcccccCcHHHh
Q psy9741 109 EKRKTDLEIYLQNVVNFLEKSLPRCLI 135 (199)
Q Consensus 109 e~Rr~~Le~yLq~ll~~~~l~~~~~l~ 135 (199)
..|-+.||.|+..|+..-.-..+..|+
T Consensus 34 ~~~v~eLEdYID~LLvRVME~~P~iLq 60 (75)
T 3tso_C 34 DTHIRELEDYIDNLLVRVMEETPSILR 60 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGGB
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHhh
Confidence 457788999999999854444454444
Done!