RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9741
(199 letters)
>3p0c_A Nischarin; structural genomics, structural genomics consortium,
SGC, PX signaling protein; 2.27A {Homo sapiens}
Length = 130
Score = 120 bits (302), Expect = 2e-35
Identities = 42/109 (38%), Positives = 64/109 (58%)
Query: 38 SKINTHITSYEIKDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPK 97
+ + E+ D +Y I V G W++ HRYSDF +L++KLV + ++K+LLPPK
Sbjct: 21 QSMEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKLVAERKIDKNLLPPK 80
Query: 98 KVLRNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLVKYDIN 146
K++ + +EKR+ DLE+YLQ ++ PR L FLH Y+IN
Sbjct: 81 KIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFYEIN 129
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex,
transport protein, phosphatidylinositol 3-phosphate
binding, nucleotide-binding; 2.20A {Homo sapiens}
Length = 134
Score = 98.4 bits (245), Expect = 8e-27
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 37 NSKINTHITSYEI----KDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKD 92
I I Y + KD +++ + V + W++ RYS F E++ L ++
Sbjct: 3 KDPIKISIPRYVLCGQGKDAHFEFEVKITVLDETWTVFRRYSRFREMHKTLKLKYAELAA 62
Query: 93 L-LPPKKVLRNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLVKYDINILLQD 151
L PPKK+ N D + +R++ LE YL++ + + +S L + + +
Sbjct: 63 LEFPPKKLFGNKDERVIAERRSHLEKYLRDFFSVMLQSATSPLHINKVGLTLSK-HTICE 121
Query: 152 FASFCFNEG 160
F+ F F +G
Sbjct: 122 FSPF-FKKG 129
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607,
structural genomics,protein structure initiative PSI;
NMR {Homo sapiens}
Length = 128
Score = 94.5 bits (235), Expect = 2e-25
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 34 YSNNSKINTHITSYEIKDKI---------ALYKITVQVGEVCWSLSHRYSDFVELNDKLV 84
+ ++ ++ HI S + + ++++ V ++ RYS+F L+ ++
Sbjct: 4 HHHHLELEVHIPSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIK 63
Query: 85 KDHSLNKDLLPPKKVLRNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLVKY 143
K + + P K L N LE+R+ LE Y+Q ++ L + +P+ L++FL L +
Sbjct: 64 KLYKV---PDFPSKRLPNWRTRGLEQRRQGLEAYIQGILY-LNQEVPKELLEFLRLRHF 118
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase;
1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Length = 154
Score = 93.1 bits (231), Expect = 2e-24
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 40 INTHITSYEIKDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKV 99
I + E K + +YK+ V VG W + RY++F +L + L K +P K++
Sbjct: 12 IPSSDEHREKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRI 71
Query: 100 L-RNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHL 140
N DP F+++R+ L ++QN+V + E + FL +
Sbjct: 72 FGDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQM 113
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain,
phosphoinositide binding, endocytosis/exocytosis
complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Length = 117
Score = 79.1 bits (195), Expect = 1e-19
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 15/116 (12%)
Query: 38 SKINTHITSYEIKDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDL-LPP 96
K+ + +I K LY ++ L RYS+F +L +L +D P
Sbjct: 4 EKLRIKVDDVKINPKYVLYGVSTP----NKRLYKRYSEFWKLKTRLERDVGSTIPYDFPE 59
Query: 97 KKVL-------RNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPR---CLIDFLHLVK 142
K + R DP +++R+ LE +L + N S R DFL L K
Sbjct: 60 KPGVLDRRWQRRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSK 115
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo
sapiens} PDB: 2rea_A 2red_A
Length = 121
Score = 71.9 bits (176), Expect = 9e-17
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Query: 43 HITSYEIK---DKIALYKITVQV--GEVCWSLSHRYSDFVELNDKLVKDH-SLNKDLLPP 96
+ +Y K DK +Y + + + + +F EL++KL P
Sbjct: 9 SVFTYHKKYNPDKHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPN 68
Query: 97 KKVL-RNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRC--LIDFLHLVKYDIN 146
+ VL R KRK +L YLQ+++N + C + F H + +
Sbjct: 69 RMVLGRTHIKDVAAKRKIELNSYLQSLMNASTD-VAECDLVCTFFHGSHHHHH 120
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P
transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Length = 115
Score = 68.5 bits (168), Expect = 1e-15
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 37 NSKINTHITSYEIKDKIA------LYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLN 90
++ ++ I E + + Y I V RYS + L+++L K++ N
Sbjct: 1 SNAMHFSIPETESRSGDSGGSAYVAYNIHVNG---VLHCRVRYSQLLGLHEQLRKEYGAN 57
Query: 91 KDLLPPKKVLRNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFL 138
P K L +L P +E+R+ LE Y+Q V FL
Sbjct: 58 VLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFL 105
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing
alpha polypeptide; PI3K, PX domain, transferase; 2.6A
{Homo sapiens}
Length = 140
Score = 68.4 bits (167), Expect = 4e-15
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 10/111 (9%)
Query: 43 HITSYEIK---DKIALYKITVQV--GEVCWSLSHRYSDFVELNDKLVKDH-SLNKDLLPP 96
+ +Y K DK +Y + + + + +F EL++KL P
Sbjct: 24 SVFTYHKKYNPDKHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPN 83
Query: 97 KKVL-RNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRC--LIDFLHLVKYD 144
+ VL R KRK +L YLQ+++N + C + F H + D
Sbjct: 84 RMVLGRTHIKDVAAKRKIELNSYLQSLMNASTD-VAECDLVCTFFHPLLRD 133
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo
sapiens} SCOP: d.189.1.1
Length = 143
Score = 65.0 bits (158), Expect = 7e-14
Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 15/126 (11%)
Query: 36 NNSKINTHITSYEIK---DKIALYKITVQ-VGEVCWSLSHRYSDFVELNDKLVKDHSLNK 91
++ I+ +I E K ++ I V+ G + + RY F L KL + +
Sbjct: 17 DDVAISANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDS 76
Query: 92 DLLP--------PKKVLRNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRC--LIDFLHLV 141
P KV + E R L Y++++++ L + + F +
Sbjct: 77 KSSALACTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSLLS-LPVWVLMDEDVRIFFYQS 135
Query: 142 KYDINI 147
YD
Sbjct: 136 PYDSEQ 141
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase
regulator; NMR {Homo sapiens}
Length = 149
Score = 61.7 bits (149), Expect = 2e-12
Identities = 15/131 (11%), Positives = 40/131 (30%), Gaps = 15/131 (11%)
Query: 30 MACLYSNNSKINTHITSYEIKDKIALYKITVQV-GEVCWSLSHRYSDFVELNDKLVKDHS 88
+ + ++ + ++ + +V+ + + +F +L L +
Sbjct: 3 LGSMAGPRYPVSVQGAALVQIKRLQTFAFSVRWSDGSDTFVRRSWDEFRQLKKTLKETFP 62
Query: 89 LNKDL----------LPPKKVL-RNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRC--LI 135
+ L L +L R + R LE Y + ++ + + R +
Sbjct: 63 VEAGLLRRSDRVLPKLLDAPLLGRVGRTSRGLARLQLLETYSRRLLA-TAERVARSPTIT 121
Query: 136 DFLHLVKYDIN 146
F D+
Sbjct: 122 GFFAPQPLDLE 132
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain,
NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo
sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Length = 141
Score = 60.1 bits (145), Expect = 4e-12
Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 15/119 (12%)
Query: 43 HITSYEIK---DKIALYKITVQV-GEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKK 98
+ +E + + +Y V+ + R+++ E + L + + + P+
Sbjct: 10 ALLGFEKRFVPSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPEN 69
Query: 99 --------VLRNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRC--LIDFLHLVKYDINI 147
E R+ L Y +++ K + RC L+DF + D+ +
Sbjct: 70 RIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLMSLPTK-ISRCPHLLDFFKVRPDDLKL 127
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein;
HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP:
d.189.1.1 PDB: 1ocu_A*
Length = 162
Score = 58.4 bits (141), Expect = 2e-11
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 15/97 (15%)
Query: 56 YKITVQV-----GEVCWSLSHRYSDFVELNDKLVKDHSLNKD------LLPPKKVLRNL- 103
Y+I + + + RYSDF L+K+ S+ LP K +L N
Sbjct: 60 YEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRF 119
Query: 104 DPTFLEKRKTDLEIYLQNVVN--FLEKSLPRCLIDFL 138
+E+R+ L ++Q+V L +S + L+ F+
Sbjct: 120 SNEVIEERRQGLNTWMQSVAGHPLL-QSGSKVLVRFI 155
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 58.6 bits (141), Expect = 1e-10
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 56 YKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDL--LPPKKVLRNLDPTFLEKRKT 113
Y++T S++HRY F L ++L+ + LP K+V + F++ R
Sbjct: 43 YQLTPTNTN--RSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIKMRME 100
Query: 114 DLEIYLQNVVNFLEKSLPRCLIDFL 138
L+ ++ + S FL
Sbjct: 101 RLQAWMTRMCRHPVISESEVFQQFL 125
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A
{Homo sapiens}
Length = 386
Score = 57.1 bits (137), Expect = 5e-10
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Query: 38 SKINTHITSYEIKDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHS-LNKDLLPP 96
I ++I+ YK+T + RY F L ++L+ + ++ LP
Sbjct: 56 KGIKSYIS----------YKLTPTHAA--SPVYRRYKHFDWLYNRLLHKFTVISVPHLPE 103
Query: 97 KKVLRNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLH 139
K+ + F+EKRK L +++ ++ + S FL
Sbjct: 104 KQATGRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLS 146
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 146
Score = 54.4 bits (131), Expect = 5e-10
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 56 YKITVQVGEVC-----WSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKVLRNL------- 103
Y++ ++ + RYSDF L ++L +D + LP K + R L
Sbjct: 31 YEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEG 90
Query: 104 --DPTFLEKRKTDLEIYLQNVVN--FLEKSLPRCLIDFL 138
+ +F+E+R+ LE ++ + + RCL FL
Sbjct: 91 IFEESFIEERRQGLEQFINKIAGHPLAQNE--RCLHMFL 127
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide;
phosphoprotein, nucleotide-binding, PIK3C2G, membrane,
PX-domain, transferase, ATP-binding; 1.25A {Homo
sapiens}
Length = 127
Score = 53.7 bits (129), Expect = 8e-10
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 7/111 (6%)
Query: 33 LYSNNSKINTH-ITSYEIKDKIALYKITVQ-VGEVCWSLSHRYSDFVELNDKLVKDHSLN 90
LY + I I + K LY I V + F +L+ +L K +
Sbjct: 18 LYFQSMSIERATILGFS-KKSSNLYLIQVTHSNNETSLTEKSFEQFSKLHSQLQKQFASL 76
Query: 91 KDL-LPPKKVLRNLDPTFLEKRKTDLEIYLQNVVNFLEK-SLPRCLIDFLH 139
P L + +R DL Y++ ++N + + C++ F
Sbjct: 77 TLPEFPHWWHLPFTNSD--HRRFRDLNHYMEQILNVSHEVTNSDCVLSFFL 125
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur
genomics consortium, protein transport, transport; 1.70A
{Homo sapiens}
Length = 138
Score = 53.6 bits (129), Expect = 1e-09
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 37 NSKINTHITSYEIKDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDH-SLNKDLLP 95
+ I T IT Y I K + + EV RY DF+ L KL + H +L LP
Sbjct: 20 VTTIETFIT-YRIITKTSRGEFDSSEFEV----RRRYQDFLWLKGKLEEAHPTLIIPPLP 74
Query: 96 PKKVLRNL----DPTFLEKRKTDLEIYLQNVVN--FLEKSLPRCLIDFL 138
K +++ + + F+E R+ L +L + + L + FL
Sbjct: 75 EKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFN--EDFKIFL 121
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P,
3-kinase, PX domain, SH3 domain, cytoskeleton, cell
polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Length = 156
Score = 52.0 bits (124), Expect = 6e-09
Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 17/123 (13%)
Query: 40 INTHITSYEIKDKIALYKITVQV-GEVCWSLSHRYSDFVELNDKLVK------DHSLNKD 92
+ + S+ ++D+ + + ++ L Y DF +L +L+ +
Sbjct: 19 VKASVESFGLEDEKYWFLVCCELSNGKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAG 78
Query: 93 LLPPKKVL-------RNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRC--LIDFLHLVKY 143
K+++ + + +KRK DL IY+ ++VN L + R + ++
Sbjct: 79 GQWSKRIMPYIPGPVPYVTNSITKKRKEDLNIYVADLVN-LPDYISRSEMVHSLFVVLNN 137
Query: 144 DIN 146
+
Sbjct: 138 GFD 140
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices,
proline rich loop, protein transport; NMR {Homo sapiens}
Length = 128
Score = 51.0 bits (122), Expect = 9e-09
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 22/117 (18%)
Query: 37 NSKINTHITSYEIKDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDL--- 93
+N ++ Y++ + +L + V R+SDF+ L +KL + HS N +
Sbjct: 15 GDGMNAYVA-YKVTTQTSLPLFRSKQFAV----KRRFSDFLGLYEKLSEKHSQNGFIVPP 69
Query: 94 LPPKKVLRNL----------DPTFLEKRKTDLEIYLQNVVN--FLEKSLPRCLIDFL 138
P K ++ FLEKR+ LE YLQ +VN + + + +FL
Sbjct: 70 PPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQD--PDVREFL 124
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 3e-05
Identities = 31/180 (17%), Positives = 64/180 (35%), Gaps = 36/180 (20%)
Query: 33 LYSNNSKINTHI-------TSYEIK---DKIALY----KITVQVGEVCWSLSHRYSDFVE 78
+ N K+ T I E + D+++++ I + + W + V
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 79 LNDKLVKDHSLNKDLLPPKKVLRNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFL 138
+N KL K + K PK+ ++ +LE + E +L R ++D
Sbjct: 408 VN-KLHKYSLVEKQ---PKESTISIPSIYLELKVKLEN----------EYALHRSIVDHY 453
Query: 139 HLVK-YDINILLQDFASFCFNEGDKYLSMGNSTHAFNPLQAQLLDSLDRALLTYKYTPPK 197
++ K +D + L+ + D+Y H N + + L +++ K
Sbjct: 454 NIPKTFDSDDLIPPYL-------DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Score = 40.6 bits (94), Expect = 2e-04
Identities = 28/193 (14%), Positives = 58/193 (30%), Gaps = 51/193 (26%)
Query: 23 SRPSKFIMACLYSNNSKINTHITSYEIKDKIALY------KITVQVGEVCWSLSHRYSDF 76
SR ++ K+ + + + K T +VC
Sbjct: 132 SRLQPYL---------KLRQALLELRPAKNVLIDGVLGSGK-TWVALDVC-----LSYKV 176
Query: 77 VELND------KLVKDHSLNKDLLPPKKVLRNLDPTFLEK---------RKTDLEIYLQN 121
D L +S L +K+L +DP + + R ++ L+
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 122 VVNFLEKSLPRCLI------DFLHLVKYDIN--ILL----QDFASFCFNEGDKYLSMGNS 169
+ K CL+ + ++++ ILL + F ++S+ +
Sbjct: 237 L--LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 170 THAFNPLQA-QLL 181
+ P + LL
Sbjct: 295 SMTLTPDEVKSLL 307
Score = 33.3 bits (75), Expect = 0.048
Identities = 19/134 (14%), Positives = 47/134 (35%), Gaps = 26/134 (19%)
Query: 71 HRYSDFVELNDKLVKDHSLNKDLLPPKKVLRNLDPTFLEKRKTDLEIYLQNVVNFLEKSL 130
H + DF E + + KD+L F + + + ++V + + L
Sbjct: 4 HHHMDF-ETGEH---QYQ-YKDILS----------VFEDAFVDNFDC--KDVQDMPKSIL 46
Query: 131 PRCLIDFLHLVKYDINILLQDFASFCFNEGDKYLSMGNSTHAFN------PLQAQLLDSL 184
+ ID + + K ++ L+ F + + + N P++ +
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE---QR 103
Query: 185 DRALLTYKYTPPKN 198
+++T Y ++
Sbjct: 104 QPSMMTRMYIEQRD 117
Score = 32.9 bits (74), Expect = 0.067
Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 19/111 (17%)
Query: 97 KKVLRNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFL--HLVKYDINILLQDFAS 154
+ L L+P K L ++ + +P L+ + ++K D+ +++
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSA------HIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 155 FCFNEGDKYLSMGNSTHAFNPLQAQLLDSLD------RALLTYKYTPPKNL 199
+ E ST + + +L L+ R+++ Y PK
Sbjct: 414 YSLVEKQPK----ESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPKTF 459
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol,
PI(4,5)P2, cell adhesion, protein transport; 1.47A
{Rattus norvegicus} PDB: 3hpb_A
Length = 161
Score = 29.8 bits (66), Expect = 0.34
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 39 KINTHITSYEIKDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKK 98
+ + + K L V + ++ DFV L+D L + ++PP
Sbjct: 21 SERDKV-KFTVHTKTTLPTFQSPEFSV----TRQHEDFVWLHDTLTETTDYAGLIIPPAP 75
Query: 99 VLRNLDPTFLEKRKTDLEIYLQNVVNFLEK 128
+ D + +K F +
Sbjct: 76 TKPDFDGPREKMQKLGEGEGSMTKEEFAKM 105
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 30.3 bits (67), Expect = 0.36
Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 13/153 (8%)
Query: 56 YKITVQV-GEVCWSLSHRYSDFVELNDKLVKDHSL------NKDLLP--PKKVLRNLDPT 106
+ I V+ G + + RY F L KL + LP P KV +
Sbjct: 43 FVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPAKVYVGVKQE 102
Query: 107 FLEKRKTDLEIYLQNVVNFLEKSLPRCLIDFLHLVKYDINILLQDFASFCFNEGDKYLSM 166
E R L Y++++++ L + + + K S+
Sbjct: 103 IAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDSEQVPQALRRLRPRTRKVKSV 162
Query: 167 GNSTHAFNPLQAQLLDSLDRALLTYKYTPPKNL 199
++ + + A AL + L
Sbjct: 163 SPQGNSVDRMAAPRA----EALFDFTGNSKLEL 191
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 28.1 bits (62), Expect = 1.8
Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 16/108 (14%)
Query: 92 DLLPPKKVLRNLDPTFLEK--------RK---TDLEIYLQNVVNFLEKSLPRCLIDFLHL 140
DLL P +L + F +K RK LE L + + +
Sbjct: 5 DLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKV 64
Query: 141 VKYDINILLQDFASFCFNEGDKYLSMGNSTHAFNPLQAQLLDSLDRAL 188
+ D N++L A C K L+ F+ + + SL
Sbjct: 65 ITKDSNVVLVAMAGKCLALLAKGLA-----KRFSNYASACVPSLLEKF 107
>1jqk_A CODH, carbon monoxide dehydrogenase; rossmann fold, oxidoreductase;
2.80A {Rhodospirillum rubrum} SCOP: e.26.1.2
Length = 639
Score = 28.4 bits (63), Expect = 1.8
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 2/97 (2%)
Query: 40 INTHITSYEIKDKIALYKITVQVGEVCWSLSHRYSDFVELNDKLVKDHSLNKDLLPPKKV 99
+ Y I+D+ LY I +G V + +L + D P +
Sbjct: 110 SQGELHDYSIRDEAKLYAIAKTLG-VATEGRGLLAIVGDLAAITLGDFQNQDYDKPCAWL 168
Query: 100 LRNLDPTFLEKRKTDLEIYLQNVVNFLEKSLPRCLID 136
+L P +++ DL + N+ + +++ R +
Sbjct: 169 AASLTPRRVKRLG-DLGLLPHNIDASVAQTMSRTHVG 204
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
binding protein complex; HET: PLP EPE; 2.53A
{Archaeoglobus fulgidus} PDB: 4eb7_A*
Length = 382
Score = 27.8 bits (63), Expect = 2.5
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 5 VPDSINCSPRSIIFLGCAS 23
V +N +++F A+
Sbjct: 52 VAKLVNGGGGTVVFTSGAT 70
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 27.9 bits (63), Expect = 2.5
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 5 VPDSINCSPRSIIFLGCAS 23
+ D + PR I+F A+
Sbjct: 77 IADLVGADPREIVFTSGAT 95
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate,
transferase; HET: PLP SLP; 1.55A {Rattus norvegicus}
PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Length = 432
Score = 27.6 bits (62), Expect = 2.8
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 5 VPDSINCSPRSIIFLGCAS 23
+ I P+ IIF +
Sbjct: 70 LAKMIGGKPQDIIFTSGGT 88
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 27.0 bits (61), Expect = 4.5
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 5 VPDSINCSPRSIIFLGCAS 23
V + SP I F CA+
Sbjct: 53 VAKVLGVSPSEIFFTSCAT 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.413
Gapped
Lambda K H
0.267 0.0853 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,907,065
Number of extensions: 159713
Number of successful extensions: 341
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 36
Length of query: 199
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 110
Effective length of database: 4,216,824
Effective search space: 463850640
Effective search space used: 463850640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.7 bits)