BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9745
(570 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WDU|A Chain A, Endonuclease Domain Of Tras1, A Telomere-Specific Non-Ltr
Retrotransposon
pdb|1WDU|B Chain B, Endonuclease Domain Of Tras1, A Telomere-Specific Non-Ltr
Retrotransposon
Length = 245
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Query: 2 VHSEEITINSPLQVVAARVRSPVLSCPLTVCCLYISHDRKITK--DEIYNIKRQL-PRPY 58
+ ++T N+ + VV R R+ +T+ Y D+ I ++I ++R++ P+
Sbjct: 95 IQYPQLTTNN-IVVVGIRTRA----WEITLVSYYFEPDKPIESYLEQIKRVERKMGPKRL 149
Query: 59 IICSDMNAHNTIWGGSKIDSNGITKDEIYNIKRQLPRPYIICSDMNAHNTIWGGSKIDS 117
I D NA +T WG + D+ G D++ +L + D+ +TI GG + S
Sbjct: 150 IFGGDANAKSTWWGSKEDDARG---DQLMGTLGELGLHILNEGDVPTFDTIRGGKRYQS 205
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 84 DEIYNIKRQL-PRPYIICSDMNAHNTIWGGSKIDSNGVQVEKFLLENDDVCLLNTNEATH 142
++I ++R++ P+ I D NA +T WG + D+ G Q+ L E + +LN +
Sbjct: 135 EQIKRVERKMGPKRLIFGGDANAKSTWWGSKEDDARGDQLMGTLGEL-GLHILNEGDVPT 193
Query: 143 FNSSNGT---FSAIDLTLASRSITPDL--KWSVHDDL 174
F++ G S +D+T + + DL W V +DL
Sbjct: 194 FDTIRGGKRYQSRVDVTFCTEDML-DLIDGWRVDEDL 229
>pdb|2EI9|A Chain A, Crystal Structure Of R1bm Endonuclease Domain
Length = 240
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 98 IICSDMNAHNTIWG---------GSKIDSNGVQVEKFLLENDDVCLLNTNEATHFNSSNG 148
+IC+D NAH+ +W G ++ ++E F+ V F+++NG
Sbjct: 123 VICADTNAHSPLWHSLPRHYVGRGQEVADRRAKMEDFIGARRLVVHNADGHLPTFSTANG 182
Query: 149 TFSAIDLTLASRSI 162
S +D+TL++R +
Sbjct: 183 E-SYVDVTLSTRGV 195
>pdb|3KD3|A Chain A, Crystal Structure Of A Phosphoserine Phosphohydrolase-Like
Protein From Francisella Tularensis Subsp. Tularensis
Schu S4
pdb|3KD3|B Chain B, Crystal Structure Of A Phosphoserine Phosphohydrolase-Like
Protein From Francisella Tularensis Subsp. Tularensis
Schu S4
Length = 219
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 394 IIRDEICSMKLNPICSIFTAELIAIEKC--LEKIKDVVTHDLVTQNFIICSDSKSSLQAL 451
+I+ E + L PI A+L IE L D+ D + + I S +K S++
Sbjct: 15 LIKKESLELILEPILQKSPAKLKEIEYITNLGXQGDISFRDSLQKRLAIASPTKQSIKEF 74
Query: 452 QNVYHVSPLVCDIISTIQDIRDLGTRVSFLWIPS 485
N Y + L I +QD+++ G + WI S
Sbjct: 75 SNKYCPNLLTDGIKELVQDLKNKGFEI---WIFS 105
>pdb|4E98|A Chain A, Crystal Structure Of Possible Cuta1 Divalent Ion Tolerance
Protein From Cryptosporidium Parvum Iowa Ii
pdb|4E98|B Chain B, Crystal Structure Of Possible Cuta1 Divalent Ion Tolerance
Protein From Cryptosporidium Parvum Iowa Ii
pdb|4E98|C Chain C, Crystal Structure Of Possible Cuta1 Divalent Ion Tolerance
Protein From Cryptosporidium Parvum Iowa Ii
Length = 138
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 166 LKWSVHDDLYLMLLVLTDIRQGSSLSGDLCNIATSDLPQYIPTVVSHG 213
K VHD+ +MLLV T + ++L + I + +LP+ I T V +G
Sbjct: 77 FKGQVHDENEVMLLVKTTSQLFTTLKEKVTEIHSYELPEIIATKVVYG 124
>pdb|4I8Q|A Chain A, Structure Of The Aminoaldehyde Dehydrogenase 1 E260a
Mutant From Solanum Lycopersicum (slamadh1-e260a)
Length = 514
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 66 AHNTIWG-GSKIDSNGITKDEIYNIKRQLPRPYIICSDMNAHNTIWGGSKIDSNGVQVEK 124
A++T +G G+ + S + + E + Q +I CS + WGG K G + K
Sbjct: 428 ANDTKYGLGAAVMSKDVKRCERFTKAFQTGIIWINCSQPTFNELPWGGKKRSGFGRDLGK 487
Query: 125 FLLENDDVCLLNTNEATHFNSS 146
+ LEN LN + T + S+
Sbjct: 488 WGLEN----FLNIKQVTEYTSA 505
>pdb|4I9B|A Chain A, Structure Of Aminoaldehyde Dehydrogenase 1 From Solanum
Lycopersium (slamadh1) With A Thiohemiacetal
Intermediate
pdb|4I9B|B Chain B, Structure Of Aminoaldehyde Dehydrogenase 1 From Solanum
Lycopersium (slamadh1) With A Thiohemiacetal
Intermediate
Length = 517
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 66 AHNTIWG-GSKIDSNGITKDEIYNIKRQLPRPYIICSDMNAHNTIWGGSKIDSNGVQVEK 124
A++T +G G+ + S + + E + Q +I CS + WGG K G + K
Sbjct: 428 ANDTKYGLGAAVMSKDVKRCERFTKAFQTGIIWINCSQPTFNELPWGGKKRSGFGRDLGK 487
Query: 125 FLLENDDVCLLNTNEATHFNSS 146
+ LEN LN + T + S+
Sbjct: 488 WGLEN----FLNIKQVTEYTSA 505
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,753,410
Number of Sequences: 62578
Number of extensions: 681429
Number of successful extensions: 1864
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1862
Number of HSP's gapped (non-prelim): 8
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)