BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9745
(570 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03272|PO14_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 4 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 392
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 55/117 (47%)
Query: 237 NTIQFKENTRYLGLNLDSSLTWKFHIEQTKSKSLKALNVMKILSNRNWGLRRETLRRLYY 296
+I F+++ RYLG++ D++L H + + K + + ++ L+ WGL + L +Y
Sbjct: 83 KSISFEQSVRYLGVHFDANLGISAHCKYLREKLVPLFSDLRKLAQCQWGLGHKALETIYK 142
Query: 297 SFALPILDYGSILYSSASEPNLKKLNVVHHTGVRLISGAFRTSPIVSILAESGIPPL 353
+P + Y S + + L +H + I+ +R++ + +G P+
Sbjct: 143 GVFVPTVCYASARWYKEGAHTDRILEDLHRQILIAITRCYRSTSYEAACVLAGTLPI 199
>sp|Q95SX7|RTBS_DROME Probable RNA-directed DNA polymerase from transposon BS
OS=Drosophila melanogaster GN=RTase PE=2 SV=1
Length = 906
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%)
Query: 244 NTRYLGLNLDSSLTWKFHIEQTKSKSLKALNVMKILSNRNWGLRRETLRRLYYSFALPIL 303
+YLG+ LD LT+ H++ T + + + ++ L NR + R +Y PI
Sbjct: 750 QAKYLGITLDKRLTFGPHLKATTRRCYQRMQQLRWLLNRKSTMTLRAKRAVYVHCVAPIW 809
Query: 304 DYGSILYSSASEPNLKKLNVVHHTGVRLIS 333
YG ++ A++ N ++ V+ + +R I+
Sbjct: 810 LYGIQIWGIAAKSNYNRIQVLQNRAMRAIT 839
>sp|P21328|RTJK_DROME RNA-directed DNA polymerase from mobile element jockey
OS=Drosophila melanogaster GN=pol PE=1 SV=1
Length = 916
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 77/204 (37%), Gaps = 49/204 (24%)
Query: 180 VLTDIRQGSSLSGDLCNIATSDLPQYIPTV------VSHGMFVDDLAIFMRGKDM----D 229
+ + QGS L L ++ SD+P + P V + DD A+ + K +
Sbjct: 638 IAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATS 697
Query: 230 HIEETLQNTIQFKEN-------------------------------------TRYLGLNL 252
++E L Q+ EN +YLG+ L
Sbjct: 698 GLQEYLDAFQQWAENWNVRINAEKCANVTFANRTGSCPGVSLNGRLIRHHQAYKYLGITL 757
Query: 253 DSSLTWKFHIEQTKSKSLKALNVMK-ILSNRNWGLRRETLRRLYYSFALPILDYGSILYS 311
D LT+ HI + + M +++ RN L +Y S P L YG +Y
Sbjct: 758 DRKLTFSRHITNIQQAFRTKVARMSWLIAPRN-KLSLGCKVNIYKSILAPCLFYGLQVYG 816
Query: 312 SASEPNLKKLNVVHHTGVRLISGA 335
A++ +L K+ ++ +R ISGA
Sbjct: 817 IAAKSHLNKIRILQAKTLRRISGA 840
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 17/146 (11%)
Query: 360 EVVHHFLEFK--EQHKLDTLCFTDGSKTTDHTGAAFIIRDEICSMK-LNPICSIFTAELI 416
+VVH K E+ +TDG K AA++ + K L P+ AE +
Sbjct: 602 QVVHDDWRMKLVEEPTSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQ-VAERM 660
Query: 417 AIEKCLEKIKDVVTHDLVTQNFIICSD--SKSSLQALQNVYHVSPLVCDIISTIQDIRDL 474
AI+ LE +D ++VT ++ + L+ QN + IQ+IR+
Sbjct: 661 AIQMALEDTRDKQV-NIVTDSYYCWKNITEGLGLEGPQNPWW---------PIIQNIREK 710
Query: 475 GTRVSFLWIPSHLGIRENDNVDHAAR 500
V F W+P H GI N D AA+
Sbjct: 711 EI-VYFAWVPGHKGIYGNQLADEAAK 735
>sp|Q03271|PO13_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 3 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 383
Score = 40.4 bits (93), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 239 IQFKENTRYLGLNLDSSLTWKFHIEQTKSKSLKALNVMKILSNRNWGLRRETLRRLYYSF 298
I+ + RYLG+N+ + + HI+ K + A+ ++ + ++WGL+R + +
Sbjct: 75 IRCVDRVRYLGVNVGIGMDFSVHIDGMKRRLTTAIMRLRGVLRKSWGLKRGVVSMVVKGL 134
Query: 299 ALPILDYG-SILYSSASEPNLK 319
LP + YG S+ Y + L+
Sbjct: 135 FLPAVMYGASVWYEQLHKRKLR 156
>sp|Q03270|PO12_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 2 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 410
Score = 39.7 bits (91), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 239 IQFKENTRYLGLNLDSSLTWKFHIEQTKSKSLKALNVMKILSNRNWGLRRETLRRLYYSF 298
I++ RYLG+N+ + + H+ K K K + +K + R+WGLRR +
Sbjct: 105 IKYVSCFRYLGVNVTEGMGFGEHVRGMKVKVAKGVQKLKRVLRRDWGLRRAASHLVLRGT 164
Query: 299 ALPILDY 305
LP + Y
Sbjct: 165 FLPQVSY 171
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 13/144 (9%)
Query: 360 EVVHHFLEFK--EQHKLDTLCFTDGSKTTDHTGAAFIIRDEICSMK-LNPICSIFTAELI 416
+VVH K E+ +TDG K AA++ + K L P+ AE +
Sbjct: 603 QVVHDDWRMKLVEEPTSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQ-VAERM 661
Query: 417 AIEKCLEKIKDVVTHDLVTQNFIICSDSKSSLQALQNVYHVSPLVCDIISTIQDIRDLGT 476
AI+ LE +D + I +DS + + + IQ+IR+
Sbjct: 662 AIQMALEDTRD--------KQVNIVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREKEI 713
Query: 477 RVSFLWIPSHLGIRENDNVDHAAR 500
V F W+P H GI N D AA+
Sbjct: 714 -VYFAWVPGHKGICGNQLADEAAK 736
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 13/144 (9%)
Query: 360 EVVHHFLEFK--EQHKLDTLCFTDGSKTTDHTGAAFIIRDEICSMK-LNPICSIFTAELI 416
+VVH K E+ +TDG K AA++ + K L P+ AE +
Sbjct: 603 QVVHDDWRMKLVEEPTSGITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQ-VAERM 661
Query: 417 AIEKCLEKIKDVVTHDLVTQNFIICSDSKSSLQALQNVYHVSPLVCDIISTIQDIRDLGT 476
AI+ LE +D + I +DS + + + IQ+IR+
Sbjct: 662 AIQMALEDTRD--------KQVNIVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREKEI 713
Query: 477 RVSFLWIPSHLGIRENDNVDHAAR 500
V F W+P H GI N D AA+
Sbjct: 714 -VYFAWVPGHKGICGNQLADEAAK 736
>sp|P21329|RTJK_DROFU RNA-directed DNA polymerase from mobile element jockey
OS=Drosophila funebris GN=jockey\pol PE=1 SV=1
Length = 916
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 49/205 (23%)
Query: 179 LVLTDIRQGSSLSGDLCNIATSDLP-QYIPTVVSHG-----MFVDDLAIFMRGKDMDHIE 232
+ + QGS L L +I T+D+P Q T ++ G + DD+A+ + +
Sbjct: 637 FIEAGVPQGSVLGPTLYSIFTADMPNQNAVTGLAEGEVLIATYADDIAVLTKSTCIVEAT 696
Query: 233 ETLQNTI-QFKE----------------------------------------NTRYLGLN 251
+ LQ + F+E +YLG+
Sbjct: 697 DALQEYLDAFQEWAVKWNVSINAGKCANVTFTNAIRDCPGVTINGSLLSHTHEYKYLGVI 756
Query: 252 LDSSLTWKFHIEQTKSKSLKALNVMK-ILSNRNWGLRRETLRRLYYSFALPILDYGSILY 310
LD SLT++ HI + + M +L+ RN L + ++Y P L Y +Y
Sbjct: 757 LDRSLTFRRHITSLQHSFRTRITKMNWLLAARN-KLSLDNKVKIYKCIVAPGLFYAIQVY 815
Query: 311 SSASEPNLKKLNVVHHTGVRLISGA 335
A+ +L K+ V+ +R ISGA
Sbjct: 816 GIAARTHLNKIRVLQAKMLRKISGA 840
>sp|P16425|Y2R2_DROME Putative 115 kDa protein in type-1 retrotransposable element R1DM
OS=Drosophila melanogaster PE=4 SV=1
Length = 1021
Score = 36.6 bits (83), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 2/131 (1%)
Query: 239 IQFKENTRYLGLNLDSSLTWKFHIEQTKSKSLKALNVMKILSNRNWGLRRETLRRLYYSF 298
+ + + RYLG+ + + + HI + + + + + +WG R +Y
Sbjct: 728 LPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGALARVLRADWGFSPRARRTIYDGL 787
Query: 299 ALPILDYGSILYSSASEPNLKKLNVVHHTGVRLIS--GAFRTSPIVSILAESGIPPLSNL 356
P + +G+ ++ +E + + + L+ RT V++ G PPL
Sbjct: 788 MAPCVLFGAPVWYDTAEQVAAQRRLASCQRLILLGCLSVCRTVSTVALQVLGGAPPLDLA 847
Query: 357 SKREVVHHFLE 367
+K + + L+
Sbjct: 848 AKLLAIKYKLK 858
>sp|Q9NBX4|RTXE_DROME Probable RNA-directed DNA polymerase from transposon X-element
OS=Drosophila melanogaster GN=X-element\ORF2 PE=3 SV=1
Length = 908
Score = 36.2 bits (82), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 82 TKDEIYNIKRQLPRPYIICSDMNAHNTIWGGSKIDSNGVQVEKFLLENDDVCLLNTNEAT 141
T DE +I + +I+ D NA + +WG + + G+ + +L N +V L T T
Sbjct: 117 TTDEFKDILEEFQTKFIVAGDWNASHWLWGAGRSNQRGIALANLVL-NSEVDSLATGGPT 175
Query: 142 HFN-SSNGTFSAIDLTL 157
+ G+ ID L
Sbjct: 176 RYPYGCRGSPGYIDFAL 192
>sp|Q06033|ITIH3_HUMAN Inter-alpha-trypsin inhibitor heavy chain H3 OS=Homo sapiens
GN=ITIH3 PE=1 SV=2
Length = 890
Score = 35.8 bits (81), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 203 PQYIPTVVSHGMFVDDLAIFMRGKDMDHIEETLQNTIQFKENTRYLGLNLDSS--LTWKF 260
PQ +P V + FV D++ M G+ ++ +E L ++ + YL L S TWK
Sbjct: 275 PQGLPVVPKNVAFVIDISGSMAGRKLEQTKEALLRILEDMQEEDYLNFILFSGDVSTWKE 334
Query: 261 HIEQTKSKSLKALNVM------KILSNRNWGLRR 288
H+ Q ++L+ K ++N N GL R
Sbjct: 335 HLVQATPENLQEARTFVKSMEDKGMTNINDGLLR 368
>sp|A9L9D9|YCF2_LEMMI Protein ycf2 OS=Lemna minor GN=ycf2-A PE=3 SV=1
Length = 2311
Score = 35.8 bits (81), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 14/117 (11%)
Query: 21 RSPVLSCPLTVCCLYISHDRKITKDEIYNIKRQLPRPYIICSDMNAHNTIWGGSKIDSNG 80
R +L V ++IS+D + DE YN+ + P I D I+ + I +
Sbjct: 1096 REAILPIDSQVSDIFISNDFPKSGDETYNLYKSFHFP--IRPDPFVRRAIYSIADISATP 1153
Query: 81 ITKDEIYNIKRQLPRPYIICSDMNAHNTIWGGSKIDSNGVQVEKFLLENDDVCLLNT 137
+T+++I + +R +P+ SDMN DS G ++L N ++ L++T
Sbjct: 1154 LTEEQIVHFERTSCQPF---SDMNLS---------DSEGKNSHQYLSFNSNMGLIHT 1198
>sp|Q54G30|PKS27_DICDI Probable polyketide synthase 27 OS=Dictyostelium discoideum
GN=pks27 PE=3 SV=1
Length = 2684
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 22/122 (18%)
Query: 367 EFKEQHKLDTLCFTDGSKTTDHTGAAFIIRDEICSMKLNPICSIFTAELIAIEKCLEKIK 426
EFK D C GS ++ HT + F+I+DE+CS+ +F + K+
Sbjct: 748 EFKSN---DIFCAMLGSLSSFHTSSQFMIKDEVCSL-------VFKS----------KLP 787
Query: 427 DVVTHDLVTQNFIICSDSKSSLQALQNVYHVSPLVCDIISTIQDIR--DLGTRVSFLWIP 484
V VT N ++ +N+Y I + + I D+G ++F+ +
Sbjct: 788 SVPVFSTVTTNLFNDQTPYNANYVWENIYQPVSFTQTISNLYKHIESNDMGNEITFIEVA 847
Query: 485 SH 486
H
Sbjct: 848 PH 849
>sp|Q5RB37|ITIH3_PONAB Inter-alpha-trypsin inhibitor heavy chain H3 OS=Pongo abelii
GN=ITIH3 PE=2 SV=1
Length = 876
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 203 PQYIPTVVSHGMFVDDLAIFMRGKDMDHIEETLQNTIQFKENTRYLGLNLDSS--LTWKF 260
PQ +P V + FV D++ M G+ ++ +E L ++ + YL L S TWK
Sbjct: 272 PQGLPVVPKNVAFVIDISGSMAGRKLEQTKEALLRILEDMKKEDYLNFILFSGDVSTWKE 331
Query: 261 HIEQTKSKSLKALNVM------KILSNRNWGLRR 288
H+ Q ++L+ K ++N N GL R
Sbjct: 332 HLVQATPENLQEARTFVKSMEDKGMTNINDGLLR 365
>sp|Q03277|PO11_SCICO Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 (Fragment) OS=Sciara coprophila PE=4 SV=1
Length = 1004
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 36/73 (49%)
Query: 238 TIQFKENTRYLGLNLDSSLTWKFHIEQTKSKSLKALNVMKILSNRNWGLRRETLRRLYYS 297
+I +K ++LG+ + + ++ H + K L + ++ + ++WGL R LY
Sbjct: 703 SISYKSEVKHLGIFVAERMNFRPHFVYLRGKILGLVGCLRRVMRKSWGLGRRATCILYKG 762
Query: 298 FALPILDYGSILY 310
+ + YG+ ++
Sbjct: 763 LFVACMSYGASVW 775
>sp|Q47IN4|PROA_DECAR Gamma-glutamyl phosphate reductase OS=Dechloromonas aromatica
(strain RCB) GN=proA PE=3 SV=1
Length = 418
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 341 IVSILAESGIPPLSNLSKREVVHHFLEFKEQHKLDTLCFTDGSKT----TDHTGAAFIIR 396
I +LAES +P + +L H +LE E L + +KT T +T + ++
Sbjct: 211 IARLLAESRVPMIQHLDGN--CHVYLE-AEADPAKALKIVENAKTQRYGTCNTAESLLVD 267
Query: 397 DEICSMKLNPICSIFTAELIAIEKCLE 423
+ +M L PI ++ TA+ + I C E
Sbjct: 268 RSVAAMLLPPIAAMLTAKGVEIRGCAE 294
>sp|Q09523|YQN2_CAEEL Uncharacterized GTP-binding protein E02H1.2 OS=Caenorhabditis
elegans GN=E02H1.2 PE=3 SV=1
Length = 394
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 493 DNVDHAARHCNDVPITKVC----ISDDHKIQFKKIQLGEWSKSWSDNTTTGQKLKKIKPD 548
+ +D R + +P+ ++ +SD+ +I K Q+G KS S N Q KP
Sbjct: 160 NKIDLVMRRSDLLPLVEILTNGQLSDNQQISTKPAQIGRLGKSLSTNI---QSSSSFKPS 216
Query: 549 TRKWKSSMR 557
KW+S R
Sbjct: 217 DEKWQSQFR 225
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,157,919
Number of Sequences: 539616
Number of extensions: 8694918
Number of successful extensions: 20602
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 20575
Number of HSP's gapped (non-prelim): 43
length of query: 570
length of database: 191,569,459
effective HSP length: 123
effective length of query: 447
effective length of database: 125,196,691
effective search space: 55962920877
effective search space used: 55962920877
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)