Query psy9745
Match_columns 570
No_of_seqs 527 out of 2923
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 18:28:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 1.4E-22 4.9E-27 184.0 9.8 128 373-506 5-152 (154)
2 2kq2_A Ribonuclease H-related 99.9 1.9E-23 6.6E-28 187.9 3.7 127 373-508 4-140 (147)
3 2zd1_A Reverse transcriptase/r 99.9 1E-21 3.5E-26 215.0 17.8 121 370-502 434-557 (557)
4 3qio_A GAG-POL polyprotein; RN 99.9 1.4E-22 4.7E-27 182.5 8.7 126 370-505 7-147 (150)
5 1mu2_A HIV-2 RT; HIV-2 reverse 99.9 7.9E-22 2.7E-26 215.8 12.3 121 371-503 432-555 (555)
6 3h08_A RNH (ribonuclease H); R 99.9 3.8E-22 1.3E-26 179.7 7.1 123 374-505 3-144 (146)
7 3p1g_A Xenotropic murine leuke 99.8 2.7E-21 9.3E-26 176.4 8.4 125 375-507 23-158 (165)
8 1jl1_A Ribonuclease HI; RNAse 99.8 3.5E-21 1.2E-25 174.9 8.1 125 375-508 4-146 (155)
9 2e4l_A Ribonuclease HI, RNAse 99.8 2.5E-21 8.6E-26 176.3 6.6 122 375-505 6-145 (158)
10 1ril_A Ribonuclease H; hydrola 99.8 3.9E-21 1.3E-25 176.4 5.1 125 374-507 7-150 (166)
11 2lsn_A Reverse transcriptase; 99.8 3.7E-20 1.3E-24 168.6 10.1 125 374-504 6-162 (165)
12 3hst_B Protein RV2228C/MT2287; 99.8 5.6E-19 1.9E-23 157.9 10.2 122 374-505 2-133 (141)
13 3u3g_D Ribonuclease H, RNAse H 99.8 1E-18 3.5E-23 155.9 10.2 120 375-504 3-136 (140)
14 2ehg_A Ribonuclease HI; RNAse 99.7 4.7E-18 1.6E-22 153.4 10.7 120 376-505 2-134 (149)
15 1zbf_A Ribonuclease H-related 99.3 1.5E-12 5.1E-17 115.1 4.3 118 373-497 9-139 (142)
16 4htu_A Ribonuclease H, RNAse H 99.0 3.4E-10 1.2E-14 97.9 5.9 75 373-454 3-83 (134)
17 2ei9_A Non-LTR retrotransposon 98.8 5.2E-09 1.8E-13 101.6 6.2 116 12-171 77-203 (240)
18 3kyl_A Telomerase reverse tran 98.8 1.1E-09 3.9E-14 112.6 1.4 122 131-255 244-397 (596)
19 1wdu_A TRAS1 ORF2P; four-layer 98.7 1.7E-08 5.7E-13 98.1 8.3 120 12-171 102-226 (245)
20 1rw3_A POL polyprotein; RNA an 98.2 6.5E-07 2.2E-11 95.2 3.9 73 182-256 167-258 (455)
21 1vyb_A ORF2 contains A reverse 97.9 9.8E-06 3.3E-10 77.4 6.3 113 12-165 94-216 (238)
22 2zd1_B P51 RT; P51/P66, hetero 97.8 8.2E-05 2.8E-09 78.1 10.8 75 180-255 145-237 (428)
23 3g91_A MTH0212, exodeoxyribonu 97.2 0.00066 2.3E-08 66.0 7.9 77 94-172 143-241 (265)
24 3fsi_A RT, reverse transcripta 96.7 0.00063 2.2E-08 66.1 2.4 72 182-255 163-253 (255)
25 2j63_A AP-endonuclease; base e 96.2 0.011 3.7E-07 62.5 9.0 72 94-166 347-443 (467)
26 2o3h_A DNA-(apurinic or apyrim 95.4 0.042 1.4E-06 53.5 8.8 17 94-110 169-185 (285)
27 1ako_A Exonuclease III; AP-end 94.6 0.063 2.1E-06 51.4 7.5 26 13-40 89-114 (268)
28 2voa_A AF_EXO, XTHA, exodeoxyr 94.5 0.055 1.9E-06 51.6 6.5 17 93-109 137-153 (257)
29 2jc4_A Exodeoxyribonuclease II 93.7 0.095 3.2E-06 49.8 6.4 17 93-109 137-153 (256)
30 2jc5_A Exodeoxyribonuclease; h 89.8 0.23 7.7E-06 47.1 4.1 17 93-109 140-156 (259)
31 3g6s_A Putative endonuclease/e 89.4 0.11 3.7E-06 49.9 1.5 24 15-38 118-141 (267)
32 1hd7_A DNA-(apurinic or apyrim 89.1 0.25 8.7E-06 49.0 4.0 16 95-110 203-218 (318)
33 4fva_A 5'-tyrosyl-DNA phosphod 88.2 0.42 1.4E-05 44.9 4.8 26 14-41 107-132 (256)
34 4gz1_A Tyrosyl-DNA phosphodies 88.0 0.54 1.8E-05 44.1 5.3 25 14-40 103-127 (256)
35 4f1h_A Tyrosyl-DNA phosphodies 86.9 0.59 2E-05 43.2 4.8 25 14-40 97-121 (250)
36 4gew_A 5'-tyrosyl-DNA phosphod 86.4 0.56 1.9E-05 47.6 4.7 25 14-40 213-237 (362)
37 3teb_A Endonuclease/exonucleas 85.0 0.92 3.2E-05 43.0 5.2 25 13-39 123-147 (266)
38 2jc5_A Exodeoxyribonuclease; h 83.1 0.63 2.2E-05 43.9 3.1 41 28-68 102-154 (259)
39 3i41_A Beta-hemolysin; beta to 83.1 2.3 7.9E-05 41.9 7.3 23 15-39 152-174 (317)
40 1zwx_A SMCL, sphingomyelinase- 81.3 0.97 3.3E-05 43.9 3.8 23 15-39 133-155 (301)
41 2ddr_A Sphingomyelin phosphodi 81.3 0.88 3E-05 44.3 3.4 24 14-39 132-155 (306)
42 3mpr_A Putative endonuclease/e 79.5 1.9 6.6E-05 41.9 5.2 23 15-37 122-144 (298)
43 3l1w_A Uncharacterized protein 78.7 2.1 7.2E-05 40.3 5.1 24 15-38 112-135 (257)
44 1wdu_A TRAS1 ORF2P; four-layer 72.0 2.4 8.3E-05 39.7 3.5 31 45-75 135-166 (245)
45 2a40_B Deoxyribonuclease-1; WA 65.1 8.2 0.00028 36.4 5.7 16 93-108 159-174 (260)
46 2ei9_A Non-LTR retrotransposon 64.8 4 0.00014 38.5 3.3 32 45-76 108-140 (240)
47 1hd7_A DNA-(apurinic or apyrim 58.4 3.9 0.00013 40.1 2.1 41 28-68 164-215 (318)
48 2ddr_A Sphingomyelin phosphodi 46.3 17 0.00057 34.9 4.4 18 94-111 187-204 (306)
49 3ngq_A CCR4-NOT transcription 42.9 19 0.00065 36.7 4.3 12 95-106 246-257 (398)
50 1zwx_A SMCL, sphingomyelinase- 42.9 13 0.00045 35.6 3.0 15 94-108 187-201 (301)
51 3teb_A Endonuclease/exonucleas 40.6 13 0.00045 34.7 2.5 25 83-107 155-181 (266)
52 2f1n_A CDT B, cytolethal diste 40.0 14 0.00047 35.1 2.5 60 85-159 162-227 (262)
53 1sr4_B CDT B, cytolethal diste 39.0 34 0.0012 32.5 5.1 12 95-106 170-181 (261)
54 1i9z_A Synaptojanin, phosphati 38.9 36 0.0012 33.9 5.5 42 12-55 145-189 (347)
55 2f1n_A CDT B, cytolethal diste 35.5 56 0.0019 31.0 5.9 50 13-68 131-190 (262)
56 4b8c_D Glucose-repressible alc 31.6 9.9 0.00034 42.2 0.0 14 94-107 595-608 (727)
57 1sr4_B CDT B, cytolethal diste 31.4 19 0.00065 34.3 1.9 38 28-65 131-179 (261)
58 3fxd_A Protein ICMQ; helix bun 30.7 96 0.0033 21.7 4.8 38 414-475 9-46 (57)
59 2jc4_A Exodeoxyribonuclease II 30.4 21 0.00072 32.9 2.1 41 28-68 98-151 (256)
60 1vyb_A ORF2 contains A reverse 29.9 30 0.001 31.3 3.1 29 46-74 127-156 (238)
61 2voa_A AF_EXO, XTHA, exodeoxyr 28.9 23 0.00079 32.8 2.1 41 28-68 98-151 (257)
62 2imq_X Salivary nitrophorin; f 28.7 35 0.0012 32.7 3.4 24 14-39 116-139 (282)
63 3g91_A MTH0212, exodeoxyribonu 26.2 22 0.00074 33.3 1.3 42 28-69 104-157 (265)
64 1xr5_A Genome polyprotein; RNA 25.6 35 0.0012 35.5 2.9 61 176-236 277-347 (466)
65 2ie4_C PP2A-alpha;, serine/thr 24.2 98 0.0033 30.1 5.7 50 40-104 21-87 (309)
66 4a9c_A Phosphatidylinositol-3, 23.4 1.2E+02 0.004 29.7 6.1 42 12-55 124-168 (316)
67 1ako_A Exonuclease III; AP-end 22.6 34 0.0012 31.7 2.0 18 93-110 142-159 (268)
68 4f1h_A Tyrosyl-DNA phosphodies 22.5 39 0.0014 30.2 2.4 16 94-109 144-159 (250)
69 3ll8_A Serine/threonine-protei 21.7 1.1E+02 0.0037 30.5 5.5 49 41-104 42-107 (357)
70 2o3h_A DNA-(apurinic or apyrim 20.2 41 0.0014 31.7 2.0 41 28-68 131-182 (285)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.87 E-value=1.4e-22 Score=184.03 Aligned_cols=128 Identities=16% Similarity=0.249 Sum_probs=101.8
Q ss_pred CCCeEEEecCCCCCC-----CceEEEEEece---eeeeccCCccccchhhHHHHHHHHHHHHhhhcccCCcceEEEEecC
Q psy9745 373 KLDTLCFTDGSKTTD-----HTGAAFIIRDE---ICSMKLNPICSIFTAELIAIEKCLEKIKDVVTHDLVTQNFIICSDS 444 (570)
Q Consensus 373 ~~~~~iytDGS~~~~-----~~G~g~~~~~~---~~~~~~~~~~s~~~aEl~ai~~al~~~~~~~~~~~~~~~v~I~tDs 444 (570)
.+.+.||||||+..+ .+|+|+++... ..+..+.+.+|++.||++|++.||+.+.+. +..+|.|+|||
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~-----~~~~v~i~tDS 79 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQ-----NINKLVLYTNS 79 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHT-----TCCEEEEEESC
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhC-----CCceEEEEECc
Confidence 456889999998643 27999888532 244556567899999999999999999875 67899999999
Q ss_pred HHHHHHHhcC--------CCC-Ch---hHHHHHHHHHHHHHhCCceEEEeecCCCCCCccchhchhhhhccCCC
Q psy9745 445 KSSLQALQNV--------YHV-SP---LVCDIISTIQDIRDLGTRVSFLWIPSHLGIRENDNVDHAARHCNDVP 506 (570)
Q Consensus 445 ~~al~~l~~~--------~~~-~~---~~~~~~~~~~~l~~~~~~v~~~WVp~H~gi~gNe~AD~lAk~a~~~~ 506 (570)
+++++.|+++ +.. .+ ...++++.+.++... ..|.|.|||||+|++|||+||+|||+|+..+
T Consensus 80 ~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~-~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 80 MFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQG-MDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp HHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTT-CEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcC-CceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 9999999872 221 11 124677777776664 5799999999999999999999999998765
No 2
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.87 E-value=1.9e-23 Score=187.89 Aligned_cols=127 Identities=16% Similarity=0.103 Sum_probs=99.4
Q ss_pred CCCeEEEecCCCCCCCceEEEEEece----eeee-cc--CC--ccccchhhHHHHHHHHHHHHhhhcccCCcceEEEEec
Q psy9745 373 KLDTLCFTDGSKTTDHTGAAFIIRDE----ICSM-KL--NP--ICSIFTAELIAIEKCLEKIKDVVTHDLVTQNFIICSD 443 (570)
Q Consensus 373 ~~~~~iytDGS~~~~~~G~g~~~~~~----~~~~-~~--~~--~~s~~~aEl~ai~~al~~~~~~~~~~~~~~~v~I~tD 443 (570)
++.+.||||||+.++.+|+|+++... ..+. .. +. .+|+++||++|++.||+.+.+. +. +|.|+||
T Consensus 4 ~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~-----~~-~v~I~tD 77 (147)
T 2kq2_A 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQL-----GV-KIRILHD 77 (147)
T ss_dssp TSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHH-----TC-CCCBSSC
T ss_pred CCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHC-----CC-eEEEEEC
Confidence 46789999999988889999999421 1222 22 21 3699999999999999998876 45 8999999
Q ss_pred CHHHHHHHhcCCCCCh-hHHHHHHHHHHHHHhCCceEEEeecCCCCCCccchhchhhhhccCCCCC
Q psy9745 444 SKSSLQALQNVYHVSP-LVCDIISTIQDIRDLGTRVSFLWIPSHLGIRENDNVDHAARHCNDVPIT 508 (570)
Q Consensus 444 s~~al~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~v~~~WVp~H~gi~gNe~AD~lAk~a~~~~~~ 508 (570)
|+.+...+.+.+..+. ....+.+.+.++.. .|.|.|||||+|++|||+||+|||+|+.....
T Consensus 78 S~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 140 (147)
T 2kq2_A 78 YAGIAFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRDL 140 (147)
T ss_dssp CSTHHHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCT
T ss_pred cHHHHHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhcccc
Confidence 9999988888776553 34444444444432 89999999999999999999999999987653
No 3
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.87 E-value=1e-21 Score=214.98 Aligned_cols=121 Identities=21% Similarity=0.231 Sum_probs=89.9
Q ss_pred hcCCCCeEEEecCCCCC--CCceEEEEEece-eeeeccCCccccchhhHHHHHHHHHHHHhhhcccCCcceEEEEecCHH
Q psy9745 370 EQHKLDTLCFTDGSKTT--DHTGAAFIIRDE-ICSMKLNPICSIFTAELIAIEKCLEKIKDVVTHDLVTQNFIICSDSKS 446 (570)
Q Consensus 370 ~~~~~~~~iytDGS~~~--~~~G~g~~~~~~-~~~~~~~~~~s~~~aEl~ai~~al~~~~~~~~~~~~~~~v~I~tDs~~ 446 (570)
++..+.+.+|||||+.. +.+|+|+++... ..... ...+||++||+.|++.||+.+ ..++.|+|||++
T Consensus 434 ep~~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~-~~~~TNn~aEl~Ai~~aL~~~---------~~~v~I~tDS~~ 503 (557)
T 2zd1_A 434 EPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVP-LTNTTNQKTELQAIYLALQDS---------GLEVNIVTDSQY 503 (557)
T ss_dssp SCCTTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEE-ECSCCHHHHHHHHHHHHHHHS---------CSEEEEEECCHH
T ss_pred CCCCCCEEEEEccCCCCCCCceEEEEEEECCcEEEec-CCCCCHHHHHHHHHHHHHHhC---------CCcEEEEeChHH
Confidence 34567899999999753 447888888432 12222 247899999999999999987 257999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHHHhCCceEEEeecCCCCCCccchhchhhhhc
Q psy9745 447 SLQALQNVYHVSPLVCDIISTIQDIRDLGTRVSFLWIPSHLGIRENDNVDHAARHC 502 (570)
Q Consensus 447 al~~l~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~WVp~H~gi~gNe~AD~lAk~a 502 (570)
|+++++++...+.. ++++.+.+.......|.|.|||||+|++|||+||+|||+|
T Consensus 504 vi~~i~~~~~~~~~--~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 504 ALGIIQAQPDKSES--ELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp HHHHHTTCCSEESS--HHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HHHHHhcCCccCCH--HHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 99999987654322 2333443333345789999999999999999999999986
No 4
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.87 E-value=1.4e-22 Score=182.51 Aligned_cols=126 Identities=20% Similarity=0.237 Sum_probs=96.2
Q ss_pred hcCCCCeEEEecCCCCC--CCceEEEEEece-eeeeccCCccccchhhHHHHHHHHHHHHhhhcccCCcceEEEEecCHH
Q psy9745 370 EQHKLDTLCFTDGSKTT--DHTGAAFIIRDE-ICSMKLNPICSIFTAELIAIEKCLEKIKDVVTHDLVTQNFIICSDSKS 446 (570)
Q Consensus 370 ~~~~~~~~iytDGS~~~--~~~G~g~~~~~~-~~~~~~~~~~s~~~aEl~ai~~al~~~~~~~~~~~~~~~v~I~tDs~~ 446 (570)
++.++.+.||||||+.. +..|+|+++... .....+ +.+|+++||++|++.||+.+ ..+|.|+|||++
T Consensus 7 ~P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~---------~~~v~i~tDS~~ 76 (150)
T 3qio_A 7 EPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS---------GLEVNIVTDSQY 76 (150)
T ss_dssp SCCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS---------CSEEEEEESCHH
T ss_pred CCCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC---------CCcEEEEeCcHH
Confidence 34567899999999754 458899888532 222222 57899999999999999973 267999999999
Q ss_pred HHHHHhcC--------CC-CChh---HHHHHHHHHHHHHhCCceEEEeecCCCCCCccchhchhhhhccCC
Q psy9745 447 SLQALQNV--------YH-VSPL---VCDIISTIQDIRDLGTRVSFLWIPSHLGIRENDNVDHAARHCNDV 505 (570)
Q Consensus 447 al~~l~~~--------~~-~~~~---~~~~~~~~~~l~~~~~~v~~~WVp~H~gi~gNe~AD~lAk~a~~~ 505 (570)
++++|+++ +. ..+. -.++++.+.++...+..|.|.|||||+|++|||.||+|||+|+..
T Consensus 77 v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 77 ALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 99999873 11 1111 145666666555667899999999999999999999999999875
No 5
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.86 E-value=7.9e-22 Score=215.75 Aligned_cols=121 Identities=22% Similarity=0.212 Sum_probs=93.6
Q ss_pred cCCCCeEEEecCCCCC--CCceEEEEEece-eeeeccCCccccchhhHHHHHHHHHHHHhhhcccCCcceEEEEecCHHH
Q psy9745 371 QHKLDTLCFTDGSKTT--DHTGAAFIIRDE-ICSMKLNPICSIFTAELIAIEKCLEKIKDVVTHDLVTQNFIICSDSKSS 447 (570)
Q Consensus 371 ~~~~~~~iytDGS~~~--~~~G~g~~~~~~-~~~~~~~~~~s~~~aEl~ai~~al~~~~~~~~~~~~~~~v~I~tDs~~a 447 (570)
..++.+.+|||||+.. +.+|+|+++... ..+... ..+||++||++|++.||+. ...++.|+|||++|
T Consensus 432 p~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~---------~~~~v~I~tDS~~v 501 (555)
T 1mu2_A 432 PIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD---------SGPKVNIIVDSQYV 501 (555)
T ss_dssp CCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT---------SCSEEEEEESCHHH
T ss_pred CCCCceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc---------CCCeEEEEEehHHH
Confidence 4467799999999864 347899888432 222222 4789999999999999986 24689999999999
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHHHhCCceEEEeecCCCCCCccchhchhhhhcc
Q psy9745 448 LQALQNVYHVSPLVCDIISTIQDIRDLGTRVSFLWIPSHLGIRENDNVDHAARHCN 503 (570)
Q Consensus 448 l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~WVp~H~gi~gNe~AD~lAk~a~ 503 (570)
+++++++...+.. .+++.+.++...+..|.+.|||||+|++|||+||+|||+|+
T Consensus 502 ~~~i~~~~~~~~~--~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 502 MGIVASQPTESES--KIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp HHHHHTCCSEESC--HHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred HHHHhcccccccH--HHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 9999985543322 24445555545568899999999999999999999999985
No 6
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.85 E-value=3.8e-22 Score=179.68 Aligned_cols=123 Identities=23% Similarity=0.217 Sum_probs=94.2
Q ss_pred CCeEEEecCCCCC--CCceEEEEEece----eeeeccCCccccchhhHHHHHHHHHHHHhhhcccCCcceEEEEecCHHH
Q psy9745 374 LDTLCFTDGSKTT--DHTGAAFIIRDE----ICSMKLNPICSIFTAELIAIEKCLEKIKDVVTHDLVTQNFIICSDSKSS 447 (570)
Q Consensus 374 ~~~~iytDGS~~~--~~~G~g~~~~~~----~~~~~~~~~~s~~~aEl~ai~~al~~~~~~~~~~~~~~~v~I~tDs~~a 447 (570)
..+.||||||+.. +.+|+|+++... ..+... +.+|+++||++|++.||+.+.+ ..+|.|+|||+++
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~-------~~~v~I~tDS~~v 74 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE-------PARVQLYSDSAYL 74 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS-------CCEEEEEESCHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc-------cCcEEEEeChHHH
Confidence 4689999999865 458999988432 122222 4689999999999999998853 4789999999999
Q ss_pred HHHHhcCC---------C-CCh---hHHHHHHHHHHHHHhCCceEEEeecCCCCCCccchhchhhhhccCC
Q psy9745 448 LQALQNVY---------H-VSP---LVCDIISTIQDIRDLGTRVSFLWIPSHLGIRENDNVDHAARHCNDV 505 (570)
Q Consensus 448 l~~l~~~~---------~-~~~---~~~~~~~~~~~l~~~~~~v~~~WVp~H~gi~gNe~AD~lAk~a~~~ 505 (570)
++.|++.+ . ..+ ...++++.+.++.+. ..|.|.|||||+|++|||.||+|||+|+..
T Consensus 75 i~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~-~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 75 VNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL-HRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp HHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH-SEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh-CceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 99998721 1 111 125677777777665 579999999999999999999999999864
No 7
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.84 E-value=2.7e-21 Score=176.40 Aligned_cols=125 Identities=24% Similarity=0.243 Sum_probs=93.7
Q ss_pred CeEEEecCCCC--CCCceEEEEEece---eeeeccCCccccchhhHHHHHHHHHHHHhhhcccCCcceEEEEecCHHHHH
Q psy9745 375 DTLCFTDGSKT--TDHTGAAFIIRDE---ICSMKLNPICSIFTAELIAIEKCLEKIKDVVTHDLVTQNFIICSDSKSSLQ 449 (570)
Q Consensus 375 ~~~iytDGS~~--~~~~G~g~~~~~~---~~~~~~~~~~s~~~aEl~ai~~al~~~~~~~~~~~~~~~v~I~tDs~~al~ 449 (570)
.+.||||||+. +|..|+|+++... .........+|+++||++|++.||+.+ ...++.|+|||+++++
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~--------~~~~v~I~tDS~~vi~ 94 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA--------EGKKLNVYTDSRYAFA 94 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT--------BTSEEEEEECCHHHHH
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc--------cCceEEEEEchHHHHh
Confidence 58999999986 5668899877421 112244567899999999999999987 2468999999999999
Q ss_pred HHhcCCCCChh-HHHHHHHHHHHHHhCCceEEEeecCCCC-----CCccchhchhhhhccCCCC
Q psy9745 450 ALQNVYHVSPL-VCDIISTIQDIRDLGTRVSFLWIPSHLG-----IRENDNVDHAARHCNDVPI 507 (570)
Q Consensus 450 ~l~~~~~~~~~-~~~~~~~~~~l~~~~~~v~~~WVp~H~g-----i~gNe~AD~lAk~a~~~~~ 507 (570)
++-......+. -.++++.+......+..|.|.|||||+| ++|||+||+|||+|+..+.
T Consensus 95 ~iw~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~ 158 (165)
T 3p1g_A 95 TAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV 158 (165)
T ss_dssp HHHSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCC
Confidence 98321111111 1344555543334568999999999999 9999999999999987553
No 8
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.83 E-value=3.5e-21 Score=174.90 Aligned_cols=125 Identities=22% Similarity=0.292 Sum_probs=96.9
Q ss_pred CeEEEecCCCCC--CCceEEEEEece----eeeeccCCccccchhhHHHHHHHHHHHHhhhcccCCcceEEEEecCHHHH
Q psy9745 375 DTLCFTDGSKTT--DHTGAAFIIRDE----ICSMKLNPICSIFTAELIAIEKCLEKIKDVVTHDLVTQNFIICSDSKSSL 448 (570)
Q Consensus 375 ~~~iytDGS~~~--~~~G~g~~~~~~----~~~~~~~~~~s~~~aEl~ai~~al~~~~~~~~~~~~~~~v~I~tDs~~al 448 (570)
.+.||||||+.. +.+|+|+++... ..+... +.+|++.||+.|++.||+.+.+ ..+|.|+|||++++
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~-------~~~v~I~tDS~~vi 75 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE-------HAEVILSTDSQYVR 75 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS-------CCEEEEEECCHHHH
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc-------CCcEEEEeCHHHHH
Confidence 578999999864 458999988531 122222 4679999999999999998863 36899999999999
Q ss_pred HHHhc--------CCCC-Chh---HHHHHHHHHHHHHhCCceEEEeecCCCCCCccchhchhhhhccCCCCC
Q psy9745 449 QALQN--------VYHV-SPL---VCDIISTIQDIRDLGTRVSFLWIPSHLGIRENDNVDHAARHCNDVPIT 508 (570)
Q Consensus 449 ~~l~~--------~~~~-~~~---~~~~~~~~~~l~~~~~~v~~~WVp~H~gi~gNe~AD~lAk~a~~~~~~ 508 (570)
+.|++ .+.. .+. -.++++.+.++.+. ..|.|.|||||+|++|||.||+|||+|+..+..
T Consensus 76 ~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 76 QGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-HQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp HHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTT-CEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHcc-CceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 99987 2221 111 14566777766654 689999999999999999999999999987654
No 9
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.83 E-value=2.5e-21 Score=176.35 Aligned_cols=122 Identities=24% Similarity=0.323 Sum_probs=95.2
Q ss_pred CeEEEecCCCCC--CCceEEEEEece----eeeeccCCccccchhhHHHHHHHHHHHHhhhcccCCcceEEEEecCHHHH
Q psy9745 375 DTLCFTDGSKTT--DHTGAAFIIRDE----ICSMKLNPICSIFTAELIAIEKCLEKIKDVVTHDLVTQNFIICSDSKSSL 448 (570)
Q Consensus 375 ~~~iytDGS~~~--~~~G~g~~~~~~----~~~~~~~~~~s~~~aEl~ai~~al~~~~~~~~~~~~~~~v~I~tDs~~al 448 (570)
.+.||||||+.. +.+|+|+++... ..+... +.+|++.||+.|++.||+.+.+ ..+|.|+|||++++
T Consensus 6 ~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~-------~~~v~I~tDS~~vi 77 (158)
T 2e4l_A 6 LIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE-------PCKIILTSDSQYMR 77 (158)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS-------CCEEEEEECCHHHH
T ss_pred eEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc-------CCeEEEEeCHHHHH
Confidence 578999999864 458999988431 122222 3689999999999999998742 27899999999999
Q ss_pred HHHhc--------CCCCC-hh---HHHHHHHHHHHHHhCCceEEEeecCCCCCCccchhchhhhhccCC
Q psy9745 449 QALQN--------VYHVS-PL---VCDIISTIQDIRDLGTRVSFLWIPSHLGIRENDNVDHAARHCNDV 505 (570)
Q Consensus 449 ~~l~~--------~~~~~-~~---~~~~~~~~~~l~~~~~~v~~~WVp~H~gi~gNe~AD~lAk~a~~~ 505 (570)
+.|.+ .+..+ +. -.++++.+.++.+. ..|.|.|||||+|++|||.||+|||+|+..
T Consensus 78 ~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 78 QGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQL-HQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp HHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTT-SEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHcc-CcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 99987 33221 11 24566777776654 689999999999999999999999999977
No 10
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.82 E-value=3.9e-21 Score=176.42 Aligned_cols=125 Identities=22% Similarity=0.202 Sum_probs=96.9
Q ss_pred CCeEEEecCCCCC--CCceEEEEEece----eeeeccCCccccchhhHHHHHHHHHHHHhhhcccCCcceEEEEecCHHH
Q psy9745 374 LDTLCFTDGSKTT--DHTGAAFIIRDE----ICSMKLNPICSIFTAELIAIEKCLEKIKDVVTHDLVTQNFIICSDSKSS 447 (570)
Q Consensus 374 ~~~~iytDGS~~~--~~~G~g~~~~~~----~~~~~~~~~~s~~~aEl~ai~~al~~~~~~~~~~~~~~~v~I~tDs~~a 447 (570)
..+.||||||+.. +.+|+|+++... ..+... +.+|++.||++|++.||+.+.+ ..+|.|+|||+++
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~-------~~~v~I~tDS~~v 78 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKE-------PCEVDLYTDSHYL 78 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCS-------CCEEEEECCCHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhcc-------CCeEEEEeChHHH
Confidence 4678999999864 458999998431 112112 4689999999999999998753 2489999999999
Q ss_pred HHHHhc---------CCC-CChh---HHHHHHHHHHHHHhCCceEEEeecCCCCCCccchhchhhhhccCCCC
Q psy9745 448 LQALQN---------VYH-VSPL---VCDIISTIQDIRDLGTRVSFLWIPSHLGIRENDNVDHAARHCNDVPI 507 (570)
Q Consensus 448 l~~l~~---------~~~-~~~~---~~~~~~~~~~l~~~~~~v~~~WVp~H~gi~gNe~AD~lAk~a~~~~~ 507 (570)
++.|.+ .+. .++. -.++++.+.++.+. ..|.|.|||||+|++|||.||+|||+|+....
T Consensus 79 i~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 79 KKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAP-HRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp HHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTT-SEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred HHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhc-CeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 999988 232 2221 24567777777665 58999999999999999999999999998765
No 11
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.81 E-value=3.7e-20 Score=168.60 Aligned_cols=125 Identities=15% Similarity=0.154 Sum_probs=89.4
Q ss_pred CCeEEEecCCCCC--CC-----ceEEEEEec---e---eeeecc-CCccccchhhHHHHHHHHHHHHhhhcccCCcceEE
Q psy9745 374 LDTLCFTDGSKTT--DH-----TGAAFIIRD---E---ICSMKL-NPICSIFTAELIAIEKCLEKIKDVVTHDLVTQNFI 439 (570)
Q Consensus 374 ~~~~iytDGS~~~--~~-----~G~g~~~~~---~---~~~~~~-~~~~s~~~aEl~ai~~al~~~~~~~~~~~~~~~v~ 439 (570)
..++||||||+.. ++ +|+|+++.. . ...... .+..+.+.||+.|+..||+.+++. ..+|.
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~------~~~v~ 79 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI------PGPVL 79 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS------SSCEE
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC------CCeEE
Confidence 4689999999863 33 799998832 1 111111 234556667777777777766543 45799
Q ss_pred EEecCHHHHHHHhc--------CCC-CChh---HHHHHHHHHHHHHhCCceEEEeecCCCCC------Cccchhchhhhh
Q psy9745 440 ICSDSKSSLQALQN--------VYH-VSPL---VCDIISTIQDIRDLGTRVSFLWIPSHLGI------RENDNVDHAARH 501 (570)
Q Consensus 440 I~tDs~~al~~l~~--------~~~-~~~~---~~~~~~~~~~l~~~~~~v~~~WVp~H~gi------~gNe~AD~lAk~ 501 (570)
|+|||++++++|.. .+. ..+. -.++++.+.++......|.|.|||||+|+ +|||+||+||++
T Consensus 80 I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~ 159 (165)
T 2lsn_A 80 VITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQ 159 (165)
T ss_dssp EEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHH
T ss_pred EEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHH
Confidence 99999999999975 222 1111 25677888777777789999999999995 589999999999
Q ss_pred ccC
Q psy9745 502 CND 504 (570)
Q Consensus 502 a~~ 504 (570)
|+.
T Consensus 160 gA~ 162 (165)
T 2lsn_A 160 GSY 162 (165)
T ss_dssp HHH
T ss_pred hhh
Confidence 874
No 12
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.78 E-value=5.6e-19 Score=157.90 Aligned_cols=122 Identities=15% Similarity=0.208 Sum_probs=99.8
Q ss_pred CCeEEEecCCCCC--CCceEEEEEece-------eeeeccCCccccchhhHHHHHHHHHHHHhhhcccCCcceEEEEecC
Q psy9745 374 LDTLCFTDGSKTT--DHTGAAFIIRDE-------ICSMKLNPICSIFTAELIAIEKCLEKIKDVVTHDLVTQNFIICSDS 444 (570)
Q Consensus 374 ~~~~iytDGS~~~--~~~G~g~~~~~~-------~~~~~~~~~~s~~~aEl~ai~~al~~~~~~~~~~~~~~~v~I~tDs 444 (570)
..+.||||||+.. +.+|+|+++.+. ..+..+ +.+|++.||+.|++.||+.+.+. +..++.|+|||
T Consensus 2 ~~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~-----~~~~v~i~tDS 75 (141)
T 3hst_B 2 VKVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKL-----GATEAAVLMDS 75 (141)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHH-----TCSEEEEEESC
T ss_pred cEEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHC-----CCceEEEEeCh
Confidence 3578999999874 468999998532 122222 47899999999999999999887 77899999999
Q ss_pred HHHHHHHhcCCC-CChhHHHHHHHHHHHHHhCCceEEEeecCCCCCCccchhchhhhhccCC
Q psy9745 445 KSSLQALQNVYH-VSPLVCDIISTIQDIRDLGTRVSFLWIPSHLGIRENDNVDHAARHCNDV 505 (570)
Q Consensus 445 ~~al~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~v~~~WVp~H~gi~gNe~AD~lAk~a~~~ 505 (570)
+++++.+++.+. .+.....+++.+..+.+.+..|.|.||| .++||.||+|||+|+..
T Consensus 76 ~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~----~~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 76 KLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVP----RARNTYADRLANDAMDA 133 (141)
T ss_dssp HHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECC----GGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcC----CcccHHHHHHHHHHHHH
Confidence 999999998764 4445667778888888888999999999 48999999999998754
No 13
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.77 E-value=1e-18 Score=155.87 Aligned_cols=120 Identities=23% Similarity=0.312 Sum_probs=97.6
Q ss_pred CeEEEecCCCCC--CCceEEEEEece------eeeeccCCccccchhhHHHHHHHHHHHHhhhcccCCcc----eEEEEe
Q psy9745 375 DTLCFTDGSKTT--DHTGAAFIIRDE------ICSMKLNPICSIFTAELIAIEKCLEKIKDVVTHDLVTQ----NFIICS 442 (570)
Q Consensus 375 ~~~iytDGS~~~--~~~G~g~~~~~~------~~~~~~~~~~s~~~aEl~ai~~al~~~~~~~~~~~~~~----~v~I~t 442 (570)
.+.||||||+.. +.+|+|+++.+. ..+... +.+|++.||+.|++.||+.+.+. +.. ++.|+|
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~-----~~~~~~~~v~i~t 76 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMF-----GDKLVDMEVEVRM 76 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGG-----GGGGTTCEEEEEE
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHc-----CCCCCCceEEEEe
Confidence 578999999864 468999998531 222223 35799999999999999999876 555 999999
Q ss_pred cCHHHHHHHhcCCC-CChhHHHHHHHHHHH-HHhCCceEEEeecCCCCCCccchhchhhhhccC
Q psy9745 443 DSKSSLQALQNVYH-VSPLVCDIISTIQDI-RDLGTRVSFLWIPSHLGIRENDNVDHAARHCND 504 (570)
Q Consensus 443 Ds~~al~~l~~~~~-~~~~~~~~~~~~~~l-~~~~~~v~~~WVp~H~gi~gNe~AD~lAk~a~~ 504 (570)
||+++++.+++.+. .+.....+++.+.++ .+....|.|.||| .++||.||+|||+|+.
T Consensus 77 DS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~----~~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 77 DSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIP----REKNARADELVNEAID 136 (140)
T ss_dssp SCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECC----GGGGHHHHHHHHHHHH
T ss_pred ChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcC----chhhHHHHHHHHHHHH
Confidence 99999999999775 344456677888888 7777899999999 5899999999999875
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.74 E-value=4.7e-18 Score=153.41 Aligned_cols=120 Identities=16% Similarity=0.259 Sum_probs=96.3
Q ss_pred eEEEecCCCC---CCCceE-EEEEecee-----eeeccC---CccccchhhHHHHHHHHHHHHhhhcccCCcceEEEEec
Q psy9745 376 TLCFTDGSKT---TDHTGA-AFIIRDEI-----CSMKLN---PICSIFTAELIAIEKCLEKIKDVVTHDLVTQNFIICSD 443 (570)
Q Consensus 376 ~~iytDGS~~---~~~~G~-g~~~~~~~-----~~~~~~---~~~s~~~aEl~ai~~al~~~~~~~~~~~~~~~v~I~tD 443 (570)
+.+|||||+. ++.+|+ |+++.+.. .+...+ +.+|++.||+.|++.||+.+.+. +..+|.|+||
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~-----g~~~v~i~tD 76 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRL-----GISSPIIKGD 76 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHH-----TCCSCEEEES
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHc-----CCCEEEEEeC
Confidence 5799999986 256885 98885321 122222 37899999999999999999887 6789999999
Q ss_pred CHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHhCCceEEEeecCCCCCCccchhchhhhhccCC
Q psy9745 444 SKSSLQALQNVYHV-SPLVCDIISTIQDIRDLGTRVSFLWIPSHLGIRENDNVDHAARHCNDV 505 (570)
Q Consensus 444 s~~al~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~v~~~WVp~H~gi~gNe~AD~lAk~a~~~ 505 (570)
|+++++.+++++.. ++....+++.+..+.+.. .|.|.|||+ ++|+.||+|||+|+..
T Consensus 77 S~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 77 SQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVAYEL 134 (149)
T ss_dssp CHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHHHHh
Confidence 99999999997653 345667788888877766 699999998 5899999999999754
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.28 E-value=1.5e-12 Score=115.12 Aligned_cols=118 Identities=12% Similarity=-0.017 Sum_probs=85.8
Q ss_pred CCCeEEEecCCCCC--CCceEEEEEecee----eeeccCCccccchhhHHHHHHHHHHHHhhhcccCCcceEEEEecCHH
Q psy9745 373 KLDTLCFTDGSKTT--DHTGAAFIIRDEI----CSMKLNPICSIFTAELIAIEKCLEKIKDVVTHDLVTQNFIICSDSKS 446 (570)
Q Consensus 373 ~~~~~iytDGS~~~--~~~G~g~~~~~~~----~~~~~~~~~s~~~aEl~ai~~al~~~~~~~~~~~~~~~v~I~tDs~~ 446 (570)
+..+.||||||+.. +.+|+|+++.... .+..+ +.+|++.||++|++.||+.+.+. .. +|.|+|||++
T Consensus 9 ~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~-~~~TNN~aEl~A~i~aL~~~~~~-----~~-~v~i~tDS~~ 81 (142)
T 1zbf_A 9 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKER-----NS-RKPIYSNSQT 81 (142)
T ss_dssp CCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCE-EEECHHHHHHHHHHHHHHHHHHT-----TC-CCCEEESCHH
T ss_pred CCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEeccc-CCcCcHHHHHHHHHHHHHHHHhC-----CC-eEEEEEehHH
Confidence 34677999999853 5689999995211 11222 36899999999999999999875 44 8999999999
Q ss_pred HHHHHhcCCCCC-----hhHHHHHHHHHHHHH--hCCceEEEeecCCCCCCccchhch
Q psy9745 447 SLQALQNVYHVS-----PLVCDIISTIQDIRD--LGTRVSFLWIPSHLGIRENDNVDH 497 (570)
Q Consensus 447 al~~l~~~~~~~-----~~~~~~~~~~~~l~~--~~~~v~~~WVp~H~gi~gNe~AD~ 497 (570)
+++.+++.+.++ ..-.++++.+.++.. ....++...|+-|++.-||..||-
T Consensus 82 vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 82 AIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTCC
T ss_pred HHHHHHcCCccCCCCCCcccHHHHHHHHHHHHHHhhCCCceeEEEeccCccCcCcccc
Confidence 999999876321 123455555544422 225667777888999999999994
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.00 E-value=3.4e-10 Score=97.94 Aligned_cols=75 Identities=15% Similarity=0.067 Sum_probs=56.3
Q ss_pred CCCeEEEecCCCCC--CCceEEEEEece----eeeeccCCccccchhhHHHHHHHHHHHHhhhcccCCcceEEEEecCHH
Q psy9745 373 KLDTLCFTDGSKTT--DHTGAAFIIRDE----ICSMKLNPICSIFTAELIAIEKCLEKIKDVVTHDLVTQNFIICSDSKS 446 (570)
Q Consensus 373 ~~~~~iytDGS~~~--~~~G~g~~~~~~----~~~~~~~~~~s~~~aEl~ai~~al~~~~~~~~~~~~~~~v~I~tDs~~ 446 (570)
+....||||||+.. |.+|+|+|+... ..+..+ +.+||++||++|++.||+.+.+. +. ++.|+|||++
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~-----~~-~v~i~tDSqy 75 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKER-----NS-RKPIYSNSQT 75 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHT-----TC-CCCEEESCHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhC-----CC-CEEEEcchHH
Confidence 34567999999864 458886666321 122222 37899999999999999999875 33 3899999999
Q ss_pred HHHHHhcC
Q psy9745 447 SLQALQNV 454 (570)
Q Consensus 447 al~~l~~~ 454 (570)
+++.|.+.
T Consensus 76 Vi~wi~~~ 83 (134)
T 4htu_A 76 AIKWVKDK 83 (134)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcC
Confidence 99999864
No 17
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=98.78 E-value=5.2e-09 Score=101.65 Aligned_cols=116 Identities=22% Similarity=0.425 Sum_probs=79.6
Q ss_pred cceEEEEEeecCccccceeeEEEEecCCCCCChhHHHHHhhhCCCCeeeeccCCCCCccccccccCCCCCChhHHHHHHH
Q psy9745 12 PLQVVAARVRSPVLSCPLTVCCLYISHDRKITKDEIYNIKRQLPRPYIICSDMNAHNTIWGGSKIDSNGITKDEIYNIKR 91 (570)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~i~~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~i~~ 91 (570)
+.+...|.+.. .+++|+|+|+||+... ++. .+.++.+..
T Consensus 77 ~~~~~~i~i~~----~~i~i~svY~P~~~~~--~~~-----------------------------------~~~l~~l~~ 115 (240)
T 2ei9_A 77 STHITVVHIGG----WDLYMVSAYFQYSDPI--DPY-----------------------------------LHRLGNILD 115 (240)
T ss_dssp CSSEEEEEETT----TTEEEEEEECCTTSCS--HHH-----------------------------------HHHHHHHHH
T ss_pred CCCEEEEEEee----ccEEEEEEEcCCCCch--hHH-----------------------------------HHHHHHHHH
Confidence 35566777764 3899999999977543 222 223334433
Q ss_pred h-CCCCeEEEcCCCCCCCCcCCCCCC---------ChhHHHHHHHhhcCCeEEEcc-CCCcccccCCCCcchhhHHhhhc
Q psy9745 92 Q-LPRPYIICSDMNAHNTIWGGSKID---------SNGVQVEKFLLENDDVCLLNT-NEATHFNSSNGTFSAIDLTLASR 160 (570)
Q Consensus 92 ~-~~~~~Ii~GDfN~~~~~wg~~~~~---------~~g~~l~~~~~~~~~l~lln~-~~~~~F~~~~~~~s~ID~~l~s~ 160 (570)
. ...++|++||||++|+.|+....+ .+|+.|..+++.. .+.++++ +...+|.+.++. +.||.+++++
T Consensus 116 ~~~~~~~Ii~GDfN~~~~~w~~~~~~~~~~~~~r~~~~~~l~~~~d~~-~l~~~~~~~~~~T~~s~~~~-~rID~~l~s~ 193 (240)
T 2ei9_A 116 RLRGARVVICADTNAHSPLWHSLPRHYVGRGQEVADRRAKMEDFIGAR-RLVVHNADGHLPTFSTANGE-SYVDVTLSTR 193 (240)
T ss_dssp HTTTSCEEEEEECCCCCGGGTCCHHHHSSSCHHHHHHHHHHHHHHHHT-TCEECCCTTCCCSEEETTEE-ECCEEEEECT
T ss_pred hcCCCcEEEEEecccccccccCCCCCCCCcchhhHHHHHHHHHHHHhc-CCEecCCCCCCceEeCCCCc-eEEEEEEecC
Confidence 2 247899999999999999876544 5688889999888 7777776 333344444443 8999999998
Q ss_pred CCCCceEEEEe
Q psy9745 161 SITPDLKWSVH 171 (570)
Q Consensus 161 ~i~~~l~~~V~ 171 (570)
.+.. ..|.+.
T Consensus 194 ~l~~-~~~~i~ 203 (240)
T 2ei9_A 194 GVRV-SEWRVT 203 (240)
T ss_dssp TCCE-EEEEEC
T ss_pred cccc-CCeEEC
Confidence 8775 444544
No 18
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A
Probab=98.77 E-value=1.1e-09 Score=112.57 Aligned_cols=122 Identities=13% Similarity=0.089 Sum_probs=77.8
Q ss_pred CeEEEccCCCcccccCCCCcchhhHHhhhcCC-----------CCce-EEEEecccceeEeeecccCCCCCCchhhHHHH
Q psy9745 131 DVCLLNTNEATHFNSSNGTFSAIDLTLASRSI-----------TPDL-KWSVHDDLYLMLLVLTDIRQGSSLSGDLCNIA 198 (570)
Q Consensus 131 ~l~lln~~~~~~F~~~~~~~s~ID~~l~s~~i-----------~~~l-~~~V~~~~~~~~~~~~GvPQGs~LSP~Lf~i~ 198 (570)
..++++.|...+|++.+|. ++=..+..+.. ..++ .+-|..+ ......+.|+|||+++||+|.|||
T Consensus 244 ~~yVVDaDIkkFFDnINHd--kLLk~L~~~i~~IlDk~Il~LIkk~Lka~LV~ig-Gk~y~qekGTPQGGVISPLLANIY 320 (596)
T 3kyl_A 244 QIYGIKVDIRDAYGNVKIP--VLCKLIQSIPTHLLDSEKKNFIVDHISNQFVAFR-RKIYKWNHGLLQGDPLSGCLCELY 320 (596)
T ss_dssp CCEEEEEEESSTTTTCCHH--HHHHHHTTSCTTTSCHHHHHHHHHHHHCEEEESS-SSEEEECSSSCBTCTTHHHHHHHH
T ss_pred CeEEEeeEHHhhCCCCCHH--HHHHHHHhhccccccHHHHHHHHHHHhhCeEEEC-CEEEecCCcccCCcchhHHHHHHH
Confidence 4578888999999999864 22112222111 0111 1112211 124567899999999999999999
Q ss_pred hcCcCccc----CCCcceeEeeccceeeecCCCH-HHHHHHhccccc---------------cccceeeeeeeeccC
Q psy9745 199 TSDLPQYI----PTVVSHGMFVDDLAIFMRGKDM-DHIEETLQNTIQ---------------FKENTRYLGLNLDSS 255 (570)
Q Consensus 199 ~~~l~~~~----~~~~~~~~yADD~~i~~~~~~~-~~~~~~l~~~l~---------------~~~~~kyLGv~ld~~ 255 (570)
++++.+.+ ..+..++.||||+++++.+... +...+.+...++ +...+.|+|+.||.+
T Consensus 321 LheLDkel~~~l~kd~~LVRYADDFVIi~~Ske~Aerfl~~Lkg~leLNpEKTrInF~~~~lp~~~fpwCGLLIDtk 397 (596)
T 3kyl_A 321 MAFMDRLYFSNLDKDAFIHRTVDDYFFCSPHPHKVYDFELLIKGVYQVNPTKTRTNLPTHRHPQDEIPYCGKIFNLT 397 (596)
T ss_dssp HHHHHHHHSTTSCTTSEEEECSSEEEEEESCHHHHHHHHHHHHHHSCEEEEEEEECCTTSSSCCSEEEETTEEEETT
T ss_pred HHHHHHHHHHhhccCceEEEEcCcEEEEECCHHHHHHHHHHhhCcceECchhceeecccccCCCceeeeeeEEEECC
Confidence 99997764 3466889999999999765432 222222222222 235799999999864
No 19
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=98.74 E-value=1.7e-08 Score=98.09 Aligned_cols=120 Identities=25% Similarity=0.451 Sum_probs=83.3
Q ss_pred cceEEEEEeecCccccceeeEEEEecCCCCCChhHHHHHhhhCCCCeeeeccCCCCCccccccccCCCCCChhHHHHHHH
Q psy9745 12 PLQVVAARVRSPVLSCPLTVCCLYISHDRKITKDEIYNIKRQLPRPYIICSDMNAHNTIWGGSKIDSNGITKDEIYNIKR 91 (570)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~i~~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~i~~ 91 (570)
+..++.+.|..+ ..+++|+|+|.|+.... ++ ..+.++.++.
T Consensus 102 ~~~~~~~~i~~~--~~~~~v~~vy~p~~~~~--~~-----------------------------------~~~~l~~~~~ 142 (245)
T 1wdu_A 102 TNNIVVVGIRTR--AWEITLVSYYFEPDKPI--ES-----------------------------------YLEQIKRVER 142 (245)
T ss_dssp CSSEEEEEEECS--SCEEEEEEEECCTTSCS--HH-----------------------------------HHHHHHHHHH
T ss_pred cCCEEEEEEEcC--CCcEEEEEEEeCCCCCH--HH-----------------------------------HHHHHHHHHH
Confidence 355677777766 56899999999965422 11 1234455555
Q ss_pred h-CCCCeEEEcCCCCCCCCcCCCCCCChhHHHHHHHhhcCCeEEEccCCCcccccCCC---CcchhhHHhhhcCCCCce-
Q psy9745 92 Q-LPRPYIICSDMNAHNTIWGGSKIDSNGVQVEKFLLENDDVCLLNTNEATHFNSSNG---TFSAIDLTLASRSITPDL- 166 (570)
Q Consensus 92 ~-~~~~~Ii~GDfN~~~~~wg~~~~~~~g~~l~~~~~~~~~l~lln~~~~~~F~~~~~---~~s~ID~~l~s~~i~~~l- 166 (570)
. ...++|++||||+++..|+....+..|+.|.+++++. ++..++++...+|.+.++ ..+.||.++.+..+...+
T Consensus 143 ~~~~~~~Ii~GDfN~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~T~~~~~~~~~~~~rID~i~~s~~~~~~v~ 221 (245)
T 1wdu_A 143 KMGPKRLIFGGDANAKSTWWGSKEDDARGDQLMGTLGEL-GLHILNEGDVPTFDTIRGGKRYQSRVDVTFCTEDMLDLID 221 (245)
T ss_dssp TTCSSSEEEEEECCCCCGGGTCSSCCHHHHHHHHHHHHH-TCEECCCSCCCSEEC-----CCEECCEEEEECGGGBTTEE
T ss_pred HhCCCcEEEEeccccCcccCCCCCcCcchHHHHHHHHHC-CcEEecCCCCCcEECCCCCCCCCCEEEEEEeChHHHhhcc
Confidence 4 3468999999999999999887788888999998877 677777654344543322 248899999998776544
Q ss_pred EEEEe
Q psy9745 167 KWSVH 171 (570)
Q Consensus 167 ~~~V~ 171 (570)
.+.|.
T Consensus 222 ~~~v~ 226 (245)
T 1wdu_A 222 GWRVD 226 (245)
T ss_dssp EEEEC
T ss_pred ceEEc
Confidence 45554
No 20
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=98.19 E-value=6.5e-07 Score=95.20 Aligned_cols=73 Identities=21% Similarity=0.178 Sum_probs=55.2
Q ss_pred cccCCCCCCchhhHHHHhcCcCcccC---CCcceeEeeccceeeecCCCHHHHHHHhccccc----------------cc
Q psy9745 182 TDIRQGSSLSGDLCNIATSDLPQYIP---TVVSHGMFVDDLAIFMRGKDMDHIEETLQNTIQ----------------FK 242 (570)
Q Consensus 182 ~GvPQGs~LSP~Lf~i~~~~l~~~~~---~~~~~~~yADD~~i~~~~~~~~~~~~~l~~~l~----------------~~ 242 (570)
.-+|||-.-||.+|.-+|+.++..+. .+..+..|+||+.+. +++.++....+++.++ ..
T Consensus 167 ~~mpfGl~naP~~fq~~m~~~l~~~~~~~~~~~v~~YvDDili~--s~~~~e~~~~l~~v~~~l~~~gl~l~~~K~~f~~ 244 (455)
T 1rw3_A 167 TRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLA--ATSELDCQQGTRALLQTLGNLGYRASAKKAQICQ 244 (455)
T ss_dssp SBCCSSCTTHHHHHHHHHHHHHHHHHHTCTTCEEEEETTEEEEE--ESSHHHHHHHHHHHHHHHHHHTCCBCGGGCCCSB
T ss_pred EecCCCCCCcHHHHHHHHHHHHHHhhhhCCCceEEEEcCCEEEe--cCCHHHHHHHHHHHHHHHHHcCCccCccchhhhc
Confidence 45899999999999999998877542 345778999999998 5566555555544432 46
Q ss_pred cceeeeeeeeccCc
Q psy9745 243 ENTRYLGLNLDSSL 256 (570)
Q Consensus 243 ~~~kyLGv~ld~~l 256 (570)
.+++|||..++...
T Consensus 245 ~~~~fLG~~i~~~g 258 (455)
T 1rw3_A 245 KQVKYLGYLLKEGQ 258 (455)
T ss_dssp SSCEETTEEESSSE
T ss_pred cceeEeeeeccCCe
Confidence 78999999998653
No 21
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=97.93 E-value=9.8e-06 Score=77.36 Aligned_cols=113 Identities=17% Similarity=0.235 Sum_probs=68.3
Q ss_pred cceEEEEEeecCccccceeeEEEEecCCCCCChhHHHHHhhhCCCCeeeeccCCCCCccccccccCCCCCChhHHHHHHH
Q psy9745 12 PLQVVAARVRSPVLSCPLTVCCLYISHDRKITKDEIYNIKRQLPRPYIICSDMNAHNTIWGGSKIDSNGITKDEIYNIKR 91 (570)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~i~~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~i~~ 91 (570)
...++.+++.++ +.++.|+|+|.|+...- .-+ +.+...+.
T Consensus 94 ~~r~i~~~~~~~--~~~~~v~~~y~p~~~~~--~~~------------------------------------~~l~~~l~ 133 (238)
T 1vyb_A 94 EGHYIMVKGSIQ--QEELTILNIYAPNTGAP--RFI------------------------------------KQVLSDLQ 133 (238)
T ss_dssp TSSEEEEEEEET--TEEEEEEEEECCSSSHH--HHH------------------------------------HHHHHHTT
T ss_pred CCcEEEEEEEeC--CCcEEEEEEecCCCCcH--HHH------------------------------------HHHHHHHH
Confidence 345667777665 56999999999955420 001 11112222
Q ss_pred h-CCCCeEEEcCCCCCCCCcCCCC---CCChhHHHHHHHhhcCCeEEE----cc--CCCcccccCCCCcchhhHHhhhcC
Q psy9745 92 Q-LPRPYIICSDMNAHNTIWGGSK---IDSNGVQVEKFLLENDDVCLL----NT--NEATHFNSSNGTFSAIDLTLASRS 161 (570)
Q Consensus 92 ~-~~~~~Ii~GDfN~~~~~wg~~~---~~~~g~~l~~~~~~~~~l~ll----n~--~~~~~F~~~~~~~s~ID~~l~s~~ 161 (570)
. ...++|++||||+.+..|+... .+..++.+.+++.+. ++.-. ++ ..+|.++......+.||.++.++.
T Consensus 134 ~~~~~~~Il~GDFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~d~~~~~~~~~~~~T~~~~~~~~~~rID~i~~s~~ 212 (238)
T 1vyb_A 134 RDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQA-DLIDIYRTLHPKSTEYTFFSAPHHTYSKIDHIVGSKA 212 (238)
T ss_dssp TTCCTTEEEEEECSSCSSGGGBTTCCCCCHHHHHHHHHHHHT-TEEEHHHHHCTTCCCCSEEETTTTEEECCEEEEEEGG
T ss_pred hccCCCEEEEccCCCCCCccccCCCCCCcHHHHHHHHHHhhC-CCEEhhHhhCCCCCceeEEcCCCCcccceEEEEeCHH
Confidence 2 3478999999999887775432 234456777777665 45433 22 234444443444578999998877
Q ss_pred CCCc
Q psy9745 162 ITPD 165 (570)
Q Consensus 162 i~~~ 165 (570)
+...
T Consensus 213 ~~~~ 216 (238)
T 1vyb_A 213 LLSK 216 (238)
T ss_dssp GGGG
T ss_pred HHhh
Confidence 6543
No 22
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=97.78 E-value=8.2e-05 Score=78.12 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=50.9
Q ss_pred eecccCCCCCCchhhHHHHhcCcCcccC---CCcceeEeeccceeeecCCCHHHHHHHhccccc---------------c
Q psy9745 180 VLTDIRQGSSLSGDLCNIATSDLPQYIP---TVVSHGMFVDDLAIFMRGKDMDHIEETLQNTIQ---------------F 241 (570)
Q Consensus 180 ~~~GvPQGs~LSP~Lf~i~~~~l~~~~~---~~~~~~~yADD~~i~~~~~~~~~~~~~l~~~l~---------------~ 241 (570)
--..+|||-..||.+|..+|+.++..+. .++.+..|.||+.+.+.+ +.++....++..++ .
T Consensus 145 ~~~vmPfGl~nsPa~fq~~m~~il~~~~~~~~~~~v~vY~DDIlI~s~~-~~~eh~~~l~~v~~~l~~~gL~l~~~Kc~~ 223 (428)
T 2zd1_B 145 QYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDL-EIGQHRTKIEELRQHLLRWGLTTPDKKHQK 223 (428)
T ss_dssp EESBCCTTCTHHHHHHHHHHHHHHHHHHHHCTTCEEEEETTEEEEEECS-CHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEeeCCCCcchHHHHHHHHHHHHHHHhhcCCCceEEEEecceEEecCC-cHHHHHHHHHHHHHHHHHhCCccChhHccc
Confidence 3456899999999999999999887543 345678999999999542 23333333333222 3
Q ss_pred ccceeeeeeeeccC
Q psy9745 242 KENTRYLGLNLDSS 255 (570)
Q Consensus 242 ~~~~kyLGv~ld~~ 255 (570)
..+++|||..++.+
T Consensus 224 ~~~~~fLG~~i~~~ 237 (428)
T 2zd1_B 224 EPPFLWMGYELHPD 237 (428)
T ss_dssp ---CTTCCEEECGG
T ss_pred cceEEEeccEecCC
Confidence 45689999999765
No 23
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=97.19 E-value=0.00066 Score=66.00 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=43.2
Q ss_pred CCCeEEEcCCCCCCCCcCCCCC----------CChhHHHHHHHhhcCCeEEE----cc--CCCcccccCCCCc-----ch
Q psy9745 94 PRPYIICSDMNAHNTIWGGSKI----------DSNGVQVEKFLLENDDVCLL----NT--NEATHFNSSNGTF-----SA 152 (570)
Q Consensus 94 ~~~~Ii~GDfN~~~~~wg~~~~----------~~~g~~l~~~~~~~~~l~ll----n~--~~~~~F~~~~~~~-----s~ 152 (570)
..++|++||||..+..+..... ......+..++ +. ++.-. ++ +.+|.|+...+.+ +.
T Consensus 143 ~~~~ii~GDfN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~-~~-gl~D~~r~~~p~~~~yT~~~~~~~~~~~~~~~r 220 (265)
T 3g91_A 143 GRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFI-EN-GYVDTFRMFNSDPGQYTWWSYRTRARERNVGWR 220 (265)
T ss_dssp TCCEEEEEECCCCCSGGGBSCTGGGTTSTTSCHHHHHHHHHHH-HT-TEEETHHHHCCCSCCCSBCCSSTTTTTTTCCBC
T ss_pred CCCEEEECccccCCchhhccCHhhcCCCCccCHHHHHHHHHHH-hc-CcEEeeHhhCCCCCCCCCcCCCCCccccCceEE
Confidence 5789999999998865432111 01113455554 44 44422 22 3455555544333 37
Q ss_pred hhHHhhhcCCCCce-EEEEec
Q psy9745 153 IDLTLASRSITPDL-KWSVHD 172 (570)
Q Consensus 153 ID~~l~s~~i~~~l-~~~V~~ 172 (570)
||.++.+..+...+ .+.+.+
T Consensus 221 ID~il~s~~~~~~~~~~~i~~ 241 (265)
T 3g91_A 221 LDYFFVNEEFKGKVKRSWILS 241 (265)
T ss_dssp CEEEEEEGGGGGGEEEEEECT
T ss_pred EEEEEECHHHHhhhcEEEEeC
Confidence 99999988776554 344443
No 24
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=96.65 E-value=0.00063 Score=66.13 Aligned_cols=72 Identities=21% Similarity=0.188 Sum_probs=55.4
Q ss_pred cccCCCCCCchhhHHHHhcCcCcccC---CCcceeEeeccceeeecCCCHHHHHHHhccccc----------------cc
Q psy9745 182 TDIRQGSSLSGDLCNIATSDLPQYIP---TVVSHGMFVDDLAIFMRGKDMDHIEETLQNTIQ----------------FK 242 (570)
Q Consensus 182 ~GvPQGs~LSP~Lf~i~~~~l~~~~~---~~~~~~~yADD~~i~~~~~~~~~~~~~l~~~l~----------------~~ 242 (570)
.-+|||-..||.+|..+++.++..+. .++.+..|.||+.+. +++.++....+++.++ .+
T Consensus 163 ~~mPfGl~~sP~~fq~~m~~il~~~~~~~~~~~v~~Y~DDili~--s~~~eeh~~~l~~v~~~L~~~gl~l~~~Kc~f~~ 240 (255)
T 3fsi_A 163 TRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLA--ATSELDCQQGTRALLQTLGNLGYRASAKKAQICQ 240 (255)
T ss_dssp SBCCTTCTTHHHHHHHHHHHHTHHHHHHCTTCEEEEETTEEEEE--ESSHHHHHHHHHHHHHHHHHHTCCBCTTTCEEEE
T ss_pred EEeCCCCCCcHHHHHHHHHHHHHHHHHhCcCcEEEEEcCCeEEE--eCCHHHHHHHHHHHHHHHHHCCeEECHHHhcccC
Confidence 44799999999999999999887643 355788999999999 5565555555544433 56
Q ss_pred cceeeeeeeeccC
Q psy9745 243 ENTRYLGLNLDSS 255 (570)
Q Consensus 243 ~~~kyLGv~ld~~ 255 (570)
.+++|||..++.+
T Consensus 241 ~~~~fLG~~i~~~ 253 (255)
T 3fsi_A 241 KQVKYLGYLLKEG 253 (255)
T ss_dssp SEEEETTEEEETT
T ss_pred CceEEEEEEEeCC
Confidence 7899999999765
No 25
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=96.23 E-value=0.011 Score=62.48 Aligned_cols=72 Identities=10% Similarity=0.111 Sum_probs=38.1
Q ss_pred CCCeEEEcCCCCCCCCcCCCC-------------CCChhHHHHHHHhhcCCeEE----Ecc---CCCcccccCCCC----
Q psy9745 94 PRPYIICSDMNAHNTIWGGSK-------------IDSNGVQVEKFLLENDDVCL----LNT---NEATHFNSSNGT---- 149 (570)
Q Consensus 94 ~~~~Ii~GDfN~~~~~wg~~~-------------~~~~g~~l~~~~~~~~~l~l----ln~---~~~~~F~~~~~~---- 149 (570)
..++|++||||..+....... +......|.+++.+. .+.- +++ +.+|+|+.....
T Consensus 347 ~~pvIL~GDFN~~p~~~D~~~~~~~~~~~~~~gf~~~er~~~~~lL~~~-gL~DafR~~~p~~~~~yTw~s~r~~~~~~n 425 (467)
T 2j63_A 347 PHGFIWAGDLNVAERDYDRYYAGTFKSMQECSGFAPEERMSFRETMQRT-NSVDIFRQLYPQAGPVYSFWSQRINGRPRN 425 (467)
T ss_dssp SCEEEEEEECCCCCSTTSBCCCSCHHHHTTSTTSCHHHHHHHHHHHHHT-TEEEHHHHHCTTBCSCCSBCCTTTTTTTTT
T ss_pred CCcEEEeccccCCCchhhhccccchhhcccccccCHHHHHHHHHHHhhC-CCEEehHhhCCCCCCCccccCCCCCcccCC
Confidence 468999999998664321100 001113455555444 3332 223 235555543222
Q ss_pred -cchhhHHhhhcCCCCce
Q psy9745 150 -FSAIDLTLASRSITPDL 166 (570)
Q Consensus 150 -~s~ID~~l~s~~i~~~l 166 (570)
-..||.+|.++.+...+
T Consensus 426 ~g~RIDyIlvS~~l~~~v 443 (467)
T 2j63_A 426 LGWRLDYFVVSSRLASYV 443 (467)
T ss_dssp CCBCCEEEEEEGGGGGGE
T ss_pred CCceeEEEEEcHHHHcce
Confidence 25799999888766543
No 26
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=95.41 E-value=0.042 Score=53.53 Aligned_cols=17 Identities=24% Similarity=0.675 Sum_probs=13.7
Q ss_pred CCCeEEEcCCCCCCCCc
Q psy9745 94 PRPYIICSDMNAHNTIW 110 (570)
Q Consensus 94 ~~~~Ii~GDfN~~~~~w 110 (570)
..++|++||||+.+..+
T Consensus 169 ~~p~Il~GDFN~~~~~~ 185 (285)
T 2o3h_A 169 RKPLVLCGDLNVAHEEI 185 (285)
T ss_dssp TSCEEEEEECSCCCSGG
T ss_pred CCCEEEEEECCCCCchh
Confidence 47899999999876543
No 27
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=94.63 E-value=0.063 Score=51.44 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=19.7
Q ss_pred ceEEEEEeecCccccceeeEEEEecCCC
Q psy9745 13 LQVVAARVRSPVLSCPLTVCCLYISHDR 40 (570)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~i~~iy~p~~~ 40 (570)
-.++.+++.++ +.++.|+|+|.|+..
T Consensus 89 ~~~~~~~~~~~--~~~~~v~~~Hl~~~~ 114 (268)
T 1ako_A 89 RRIIMAEIPSL--LGNVTVINGYFPQGE 114 (268)
T ss_dssp TTEEEEEEEET--TEEEEEEEEECCCCC
T ss_pred CCEEEEEEEcC--CCeEEEEEEEecCCC
Confidence 34667777766 559999999999654
No 28
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=94.45 E-value=0.055 Score=51.63 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=13.7
Q ss_pred CCCCeEEEcCCCCCCCC
Q psy9745 93 LPRPYIICSDMNAHNTI 109 (570)
Q Consensus 93 ~~~~~Ii~GDfN~~~~~ 109 (570)
...++|++||||+.+..
T Consensus 137 ~~~p~Il~GDFN~~~~~ 153 (257)
T 2voa_A 137 FRSFAVWCGDMNVAPEP 153 (257)
T ss_dssp TTSCEEEEEECSCCCSG
T ss_pred CCCCEEEEeeCCCCCch
Confidence 46789999999988644
No 29
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=93.66 E-value=0.095 Score=49.75 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=14.0
Q ss_pred CCCCeEEEcCCCCCCCC
Q psy9745 93 LPRPYIICSDMNAHNTI 109 (570)
Q Consensus 93 ~~~~~Ii~GDfN~~~~~ 109 (570)
...++|++||||+.+..
T Consensus 137 ~~~~~il~GDFN~~~~~ 153 (256)
T 2jc4_A 137 RHGKLVLLGDFNIAPAD 153 (256)
T ss_dssp TCSSEEEEEECCCCCSG
T ss_pred CCCCEEEEeECCCCCch
Confidence 46789999999998754
No 30
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=89.84 E-value=0.23 Score=47.14 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=13.9
Q ss_pred CCCCeEEEcCCCCCCCC
Q psy9745 93 LPRPYIICSDMNAHNTI 109 (570)
Q Consensus 93 ~~~~~Ii~GDfN~~~~~ 109 (570)
...++|++||||+.+..
T Consensus 140 ~~~~~Il~GDFN~~~~~ 156 (259)
T 2jc5_A 140 EGRDIVVCGDWNIAHQN 156 (259)
T ss_dssp TCSEEEEEEECCCCCSG
T ss_pred cCCCEEEEeeCCCCCch
Confidence 36789999999998654
No 31
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=89.42 E-value=0.11 Score=49.95 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=16.1
Q ss_pred EEEEEeecCccccceeeEEEEecC
Q psy9745 15 VVAARVRSPVLSCPLTVCCLYISH 38 (570)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~iy~p~ 38 (570)
++.+.+.....+.++.|+|+..+.
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~Hl~~ 141 (267)
T 3g6s_A 118 ATWAKFKDKATGKIFMAVNTHFDH 141 (267)
T ss_dssp EEEEEEEETTTCCEEEEEEEECCS
T ss_pred EEEEEEEEcCCCCEEEEEEeCCCC
Confidence 455666643336689999999873
No 32
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=89.13 E-value=0.25 Score=48.96 Aligned_cols=16 Identities=25% Similarity=0.735 Sum_probs=13.5
Q ss_pred CCeEEEcCCCCCCCCc
Q psy9745 95 RPYIICSDMNAHNTIW 110 (570)
Q Consensus 95 ~~~Ii~GDfN~~~~~w 110 (570)
.++|++||||+.+..|
T Consensus 203 ~pvIl~GDFN~~~~~~ 218 (318)
T 1hd7_A 203 KPLVLCGDLNVAHEEI 218 (318)
T ss_dssp SCEEEEEECSCCCSGG
T ss_pred CCEEEEeeCCCCChhh
Confidence 7899999999987654
No 33
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=88.23 E-value=0.42 Score=44.86 Aligned_cols=26 Identities=4% Similarity=-0.082 Sum_probs=18.5
Q ss_pred eEEEEEeecCccccceeeEEEEecCCCC
Q psy9745 14 QVVAARVRSPVLSCPLTVCCLYISHDRK 41 (570)
Q Consensus 14 ~~~~~~~~~~~~~~~~~i~~iy~p~~~~ 41 (570)
.++.+.+.++ +.++.|+|+|.++...
T Consensus 107 ~~~~~~~~~~--g~~~~v~~~Hl~~~~~ 132 (256)
T 4fva_A 107 TLQILEGSIG--GLKVFLLNTHLESTRE 132 (256)
T ss_dssp EEEEEEEEET--TEEEEEEEEECCCSGG
T ss_pred eeEEEEEEeC--CeEEEEEEecCCCCCc
Confidence 4555666666 6699999999985443
No 34
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=88.00 E-value=0.54 Score=44.07 Aligned_cols=25 Identities=8% Similarity=0.107 Sum_probs=17.4
Q ss_pred eEEEEEeecCccccceeeEEEEecCCC
Q psy9745 14 QVVAARVRSPVLSCPLTVCCLYISHDR 40 (570)
Q Consensus 14 ~~~~~~~~~~~~~~~~~i~~iy~p~~~ 40 (570)
.++.+.+..+ +.++.|+|++.+...
T Consensus 103 ~~~~~~~~~~--~~~~~v~~~Hl~~~~ 127 (256)
T 4gz1_A 103 NLLCVNVSLG--GNEFCLMTSHLESTR 127 (256)
T ss_dssp EEEEEEEEET--TEEEEEEECBCCCSG
T ss_pred eEEEEEEEeC--CEEEEEEeecccccc
Confidence 3455666655 668999999987443
No 35
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=86.94 E-value=0.59 Score=43.19 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=16.3
Q ss_pred eEEEEEeecCccccceeeEEEEecCCC
Q psy9745 14 QVVAARVRSPVLSCPLTVCCLYISHDR 40 (570)
Q Consensus 14 ~~~~~~~~~~~~~~~~~i~~iy~p~~~ 40 (570)
.++.+.+..+ +.++.++|++.+...
T Consensus 97 ~~~~~~~~~~--~~~~~v~~~hl~~~~ 121 (250)
T 4f1h_A 97 NLLIAQVTFS--GQKLYLMTSHLESCK 121 (250)
T ss_dssp EEEEEEEEET--TEEEEEEECBCCCSG
T ss_pred eEEEEEEecC--CcEEEEecccccccc
Confidence 3445555555 668899999887443
No 36
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=86.41 E-value=0.56 Score=47.55 Aligned_cols=25 Identities=4% Similarity=-0.101 Sum_probs=18.4
Q ss_pred eEEEEEeecCccccceeeEEEEecCCC
Q psy9745 14 QVVAARVRSPVLSCPLTVCCLYISHDR 40 (570)
Q Consensus 14 ~~~~~~~~~~~~~~~~~i~~iy~p~~~ 40 (570)
.++.+.|.++ +.++.|+|+|+|+..
T Consensus 213 ~~l~~~i~~~--g~~l~v~ntHL~s~~ 237 (362)
T 4gew_A 213 TLQILEGSIG--GLKVFLLNTHLESTR 237 (362)
T ss_dssp EEEEEEEEET--TEEEEEEEEECCCSG
T ss_pred eEEEEEEEEC--CEEEEEEEecCCccc
Confidence 4555666665 669999999998544
No 37
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=85.03 E-value=0.92 Score=42.95 Aligned_cols=25 Identities=4% Similarity=0.052 Sum_probs=18.5
Q ss_pred ceEEEEEeecCccccceeeEEEEecCC
Q psy9745 13 LQVVAARVRSPVLSCPLTVCCLYISHD 39 (570)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~i~~iy~p~~ 39 (570)
-.++.+++..+ +.++.|+|++.+..
T Consensus 123 r~~~~~~~~~~--~~~~~v~~~Hl~~~ 147 (266)
T 3teb_A 123 RRIVSITINYE--GQDIEFYSCHMNLP 147 (266)
T ss_dssp CEEEEEEEEET--TEEEEEEEEECCCT
T ss_pred ceEEEEEEEeC--CeEEEEEEecCCCc
Confidence 34566777666 67999999999854
No 38
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=83.09 E-value=0.63 Score=43.92 Aligned_cols=41 Identities=24% Similarity=0.502 Sum_probs=31.4
Q ss_pred ceeeEEEEecCCCCCC---------hhHHHHHhhhC---CCCeeeeccCCCCC
Q psy9745 28 PLTVCCLYISHDRKIT---------KDEIYNIKRQL---PRPYIICSDMNAHN 68 (570)
Q Consensus 28 ~~~i~~iy~p~~~~~~---------~~~~~~~~~~~---~~~~~~~~~~~~~~ 68 (570)
++.|+|+|.|+...-. .+++.+.++++ ..|.+++||||+..
T Consensus 102 ~~~v~~~h~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~ 154 (259)
T 2jc5_A 102 RLSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAH 154 (259)
T ss_dssp TEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCC
T ss_pred CEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCC
Confidence 8999999999876521 24455556666 68999999999875
No 39
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=83.08 E-value=2.3 Score=41.92 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=16.9
Q ss_pred EEEEEeecCccccceeeEEEEecCC
Q psy9745 15 VVAARVRSPVLSCPLTVCCLYISHD 39 (570)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~iy~p~~ 39 (570)
++.++|.++ +.++.|+|+..++.
T Consensus 152 ~~~~~i~~~--g~~v~v~~~Hl~~~ 174 (317)
T 3i41_A 152 FVYTKIEKN--GKNVHVIGTHTQSE 174 (317)
T ss_dssp EEEEEEEET--TEEEEEEEEECCCC
T ss_pred eEEEEEEEC--CEEEEEEEECCCCC
Confidence 456666665 66899999999743
No 40
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=81.29 E-value=0.97 Score=43.88 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=18.0
Q ss_pred EEEEEeecCccccceeeEEEEecCC
Q psy9745 15 VVAARVRSPVLSCPLTVCCLYISHD 39 (570)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~iy~p~~ 39 (570)
++.+.+.++ +.++.|+|++.++.
T Consensus 133 ~~~~~~~~~--g~~~~v~~~Hl~~~ 155 (301)
T 1zwx_A 133 FAYVKIMKN--GKPYHIIGTHTQAD 155 (301)
T ss_dssp EEEEEEEET--TEEEEEEEEECCCC
T ss_pred eEEEEEEEC--CEEEEEEEecCCCC
Confidence 566777765 66999999999854
No 41
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=81.25 E-value=0.88 Score=44.27 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=18.1
Q ss_pred eEEEEEeecCccccceeeEEEEecCC
Q psy9745 14 QVVAARVRSPVLSCPLTVCCLYISHD 39 (570)
Q Consensus 14 ~~~~~~~~~~~~~~~~~i~~iy~p~~ 39 (570)
-++.+.+.++ +.++.|+|++.++.
T Consensus 132 ~~~~~~i~~~--g~~~~v~~~Hl~~~ 155 (306)
T 2ddr_A 132 GFVYTKIKKN--DRFVHVIGTHLQAE 155 (306)
T ss_dssp EEEEEEEEET--TEEEEEEEEECCCC
T ss_pred CeEEEEEEeC--CEEEEEEEECCCCC
Confidence 3566777766 66899999999855
No 42
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=79.47 E-value=1.9 Score=41.91 Aligned_cols=23 Identities=4% Similarity=-0.045 Sum_probs=15.1
Q ss_pred EEEEEeecCccccceeeEEEEec
Q psy9745 15 VVAARVRSPVLSCPLTVCCLYIS 37 (570)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~iy~p 37 (570)
++.+.+.....+.++.|+|+..+
T Consensus 122 ~~~~~~~~~~~g~~~~v~~~Hl~ 144 (298)
T 3mpr_A 122 CSWGHFKCKDTGFEFLFFNLHMD 144 (298)
T ss_dssp EEEEEEEETTTCCEEEEEEEECC
T ss_pred eEEEEEEEcCCCCEEEEEEecCC
Confidence 34555553223668999999987
No 43
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=78.72 E-value=2.1 Score=40.32 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=15.9
Q ss_pred EEEEEeecCccccceeeEEEEecC
Q psy9745 15 VVAARVRSPVLSCPLTVCCLYISH 38 (570)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~iy~p~ 38 (570)
++.+.+.....+.++.|+|++.++
T Consensus 112 ~~~~~~~~~~~g~~~~v~~~Hl~~ 135 (257)
T 3l1w_A 112 ALWGLFKETTQNTPFLVINVHLDH 135 (257)
T ss_dssp EEEEEEEETTCSSCEEEEEEECCS
T ss_pred eEEEEEEEcCCCCEEEEEEeCCCC
Confidence 345566543335689999999874
No 44
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=72.01 E-value=2.4 Score=39.70 Aligned_cols=31 Identities=29% Similarity=0.628 Sum_probs=25.1
Q ss_pred hHHHHHhhhCC-CCeeeeccCCCCCccccccc
Q psy9745 45 DEIYNIKRQLP-RPYIICSDMNAHNTIWGGSK 75 (570)
Q Consensus 45 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 75 (570)
+++..+++.++ .|.+++||||++...|+...
T Consensus 135 ~~l~~~~~~~~~~~~Ii~GDfN~~~~~~~~~~ 166 (245)
T 1wdu_A 135 EQIKRVERKMGPKRLIFGGDANAKSTWWGSKE 166 (245)
T ss_dssp HHHHHHHHTTCSSSEEEEEECCCCCGGGTCSS
T ss_pred HHHHHHHHHhCCCcEEEEeccccCcccCCCCC
Confidence 47788887764 79999999999988888654
No 45
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=65.06 E-value=8.2 Score=36.41 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=12.7
Q ss_pred CCCCeEEEcCCCCCCC
Q psy9745 93 LPRPYIICSDMNAHNT 108 (570)
Q Consensus 93 ~~~~~Ii~GDfN~~~~ 108 (570)
...++|++||||+...
T Consensus 159 ~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 159 HLNDVMLMGDFNADCS 174 (260)
T ss_dssp CCCCEEEEEECCCSTT
T ss_pred CCCCEEEEecCCCCCc
Confidence 3578999999998643
No 46
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=64.80 E-value=4 Score=38.46 Aligned_cols=32 Identities=31% Similarity=0.565 Sum_probs=23.8
Q ss_pred hHHHHHhhhC-CCCeeeeccCCCCCcccccccc
Q psy9745 45 DEIYNIKRQL-PRPYIICSDMNAHNTIWGGSKI 76 (570)
Q Consensus 45 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 76 (570)
+.++++.+.+ ..|.+++||||++.++|+....
T Consensus 108 ~~l~~l~~~~~~~~~Ii~GDfN~~~~~w~~~~~ 140 (240)
T 2ei9_A 108 HRLGNILDRLRGARVVICADTNAHSPLWHSLPR 140 (240)
T ss_dssp HHHHHHHHHTTTSCEEEEEECCCCCGGGTCCHH
T ss_pred HHHHHHHHhcCCCcEEEEEecccccccccCCCC
Confidence 4556665543 4799999999999999986543
No 47
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=58.42 E-value=3.9 Score=40.15 Aligned_cols=41 Identities=15% Similarity=0.477 Sum_probs=31.6
Q ss_pred ceeeEEEEecCCCCCC---------hhHHHHHhhhCC--CCeeeeccCCCCC
Q psy9745 28 PLTVCCLYISHDRKIT---------KDEIYNIKRQLP--RPYIICSDMNAHN 68 (570)
Q Consensus 28 ~~~i~~iy~p~~~~~~---------~~~~~~~~~~~~--~~~~~~~~~~~~~ 68 (570)
++.|+|+|.|+...-. .++|...++++. .|.|++||||+..
T Consensus 164 ~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~pvIl~GDFN~~~ 215 (318)
T 1hd7_A 164 SFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAH 215 (318)
T ss_dssp SCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHHHHHSCEEEEEECSCCC
T ss_pred CEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHhcccCCCEEEEeeCCCCC
Confidence 8999999999876531 145666677775 7999999999754
No 48
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=46.28 E-value=17 Score=34.85 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=14.4
Q ss_pred CCCeEEEcCCCCCCCCcC
Q psy9745 94 PRPYIICSDMNAHNTIWG 111 (570)
Q Consensus 94 ~~~~Ii~GDfN~~~~~wg 111 (570)
..++|++||||.....++
T Consensus 187 ~~pvil~GDfN~~~~~~d 204 (306)
T 2ddr_A 187 NEYVLIGGDMNVNKINAE 204 (306)
T ss_dssp TSCEEEEEECCCCCTTTS
T ss_pred CCEEEEEeeCCCCccccc
Confidence 368999999999875554
No 49
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=42.88 E-value=19 Score=36.66 Aligned_cols=12 Identities=33% Similarity=0.949 Sum_probs=9.7
Q ss_pred CCeEEEcCCCCC
Q psy9745 95 RPYIICSDMNAH 106 (570)
Q Consensus 95 ~~~Ii~GDfN~~ 106 (570)
.|+|+|||||+.
T Consensus 246 ~PvIl~GDFNs~ 257 (398)
T 3ngq_A 246 IPLVLCADLNSL 257 (398)
T ss_dssp CCEEEEEECSCC
T ss_pred CceEEEeeCCCC
Confidence 578888888876
No 50
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=42.88 E-value=13 Score=35.59 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=12.1
Q ss_pred CCCeEEEcCCCCCCC
Q psy9745 94 PRPYIICSDMNAHNT 108 (570)
Q Consensus 94 ~~~~Ii~GDfN~~~~ 108 (570)
..++|++||||....
T Consensus 187 ~~pvIl~GDfN~~~~ 201 (301)
T 1zwx_A 187 DEIIFIGGDLNVNYG 201 (301)
T ss_dssp TSEEEEEEECCCCTT
T ss_pred CCeEEEEeeCCCCCC
Confidence 368999999998754
No 51
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=40.64 E-value=13 Score=34.65 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=17.5
Q ss_pred hhHHHHHHHhC--CCCeEEEcCCCCCC
Q psy9745 83 KDEIYNIKRQL--PRPYIICSDMNAHN 107 (570)
Q Consensus 83 ~~~l~~i~~~~--~~~~Ii~GDfN~~~ 107 (570)
...+..++... ..++|++||||+..
T Consensus 155 ~~q~~~l~~~~~~~~~~il~GDfN~~~ 181 (266)
T 3teb_A 155 GKNIQTILNRTQNSNLKILMGDFNTDA 181 (266)
T ss_dssp HHHHHHHHTSSCSCCEEEEEEECCCCT
T ss_pred HHHHHHHHHHHhcCCcEEEEeECCCCC
Confidence 34455555543 57899999999864
No 52
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=39.98 E-value=14 Score=35.14 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=31.6
Q ss_pred HHHHHHHhCCC------CeEEEcCCCCCCCCcCCCCCCChhHHHHHHHhhcCCeEEEccCCCcccccCCCCcchhhHHhh
Q psy9745 85 EIYNIKRQLPR------PYIICSDMNAHNTIWGGSKIDSNGVQVEKFLLENDDVCLLNTNEATHFNSSNGTFSAIDLTLA 158 (570)
Q Consensus 85 ~l~~i~~~~~~------~~Ii~GDfN~~~~~wg~~~~~~~g~~l~~~~~~~~~l~lln~~~~~~F~~~~~~~s~ID~~l~ 158 (570)
.+.+.+...+. |.||+||||.-...--... .. .+ .. ...++.++.+|..+. ..||..+.
T Consensus 162 ~I~~~~~~~~~~~~~~~pwii~GDFNr~P~sl~~~l-~~------~~--~~-~~~~~~p~~~T~~s~-----~~LDY~~~ 226 (262)
T 2f1n_A 162 EVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNL-TV------PV--RR-ASEIISPAAATQTSQ-----RTLDYAVA 226 (262)
T ss_dssp HHHHHHHTCSSHHHHTCEEEEEEECSSCHHHHHTTS-CH------HH--HH-TEEEECCSSCSBTTS-----CCCEEEEE
T ss_pred HHHHHHhcCcccccCCCcEEEEecCCCCCcchhhhh-hc------cc--cc-ceEEcCCCCCCCCCC-----CeEeEEEE
Confidence 33444445554 8999999997653322111 11 11 12 455666766663332 35666665
Q ss_pred h
Q psy9745 159 S 159 (570)
Q Consensus 159 s 159 (570)
.
T Consensus 227 ~ 227 (262)
T 2f1n_A 227 G 227 (262)
T ss_dssp E
T ss_pred c
Confidence 4
No 53
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=39.03 E-value=34 Score=32.52 Aligned_cols=12 Identities=17% Similarity=0.484 Sum_probs=11.2
Q ss_pred CCeEEEcCCCCC
Q psy9745 95 RPYIICSDMNAH 106 (570)
Q Consensus 95 ~~~Ii~GDfN~~ 106 (570)
.+.||+||||..
T Consensus 170 ~~~ii~GDFN~~ 181 (261)
T 1sr4_B 170 YSWMVVGDFNRA 181 (261)
T ss_dssp CEEEEEEECSSC
T ss_pred CcEEEEeeCCCC
Confidence 589999999999
No 54
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=38.91 E-value=36 Score=33.86 Aligned_cols=42 Identities=14% Similarity=0.041 Sum_probs=27.9
Q ss_pred cceEEEEEeecCccccceeeEEEEecCCCCC---ChhHHHHHhhhCC
Q psy9745 12 PLQVVAARVRSPVLSCPLTVCCLYISHDRKI---TKDEIYNIKRQLP 55 (570)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~i~~iy~p~~~~~---~~~~~~~~~~~~~ 55 (570)
+-=+++|++.+. +..++++|.-+..+..- -.+|...|++.+-
T Consensus 145 nKGav~vr~~~~--~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~ 189 (347)
T 1i9z_A 145 NKGAVAIRFDYE--DTGLCFITSHLAAGYTNYDERDHDYRTIASGLR 189 (347)
T ss_dssp CCEEEEEEEEET--TEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCC
T ss_pred CCceEEEEEEEC--CeEEEEEEecCCCCCccHHHHHHHHHHHHHhhc
Confidence 345678888877 56899999998865432 2345556666554
No 55
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=35.55 E-value=56 Score=30.98 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=33.7
Q ss_pred ceEEEEEeecCccccceeeEEEEecCCCCCCh----hHHHHHhhhCCC------CeeeeccCCCCC
Q psy9745 13 LQVVAARVRSPVLSCPLTVCCLYISHDRKITK----DEIYNIKRQLPR------PYIICSDMNAHN 68 (570)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~i~~iy~p~~~~~~~----~~~~~~~~~~~~------~~~~~~~~~~~~ 68 (570)
--+++|+|. ++.++|+=+=....-+. ..|.+...+.|. |.+|+||||.-.
T Consensus 131 Rp~lgiri~------~~~ff~tHa~a~~g~da~a~v~~I~~~~~~~~~~~~~~~pwii~GDFNr~P 190 (262)
T 2f1n_A 131 RPLLGIRIG------NDAFFTAHAIAMRNNDAPALVEEVYNFFRDSRDPVHQALNWMILGDFNREP 190 (262)
T ss_dssp CCEEEEEET------TEEEEEEECCSSSSCSHHHHHHHHHHHHHTCSSHHHHTCEEEEEEECSSCH
T ss_pred CceEEEEEC------CEEEEEEEecCCCCccHHHHHHHHHHHHhcCcccccCCCcEEEEecCCCCC
Confidence 445666663 68888887654433333 344444557887 999999999875
No 56
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=31.62 E-value=9.9 Score=42.15 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=0.0
Q ss_pred CCCeEEEcCCCCCC
Q psy9745 94 PRPYIICSDMNAHN 107 (570)
Q Consensus 94 ~~~~Ii~GDfN~~~ 107 (570)
..|+|+|||||+..
T Consensus 595 ~~pvIl~GDFNs~P 608 (727)
T 4b8c_D 595 KFPVLICGDFNSYI 608 (727)
T ss_dssp --------------
T ss_pred CCceEEecccCCCC
Confidence 45799999999874
No 57
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=31.36 E-value=19 Score=34.33 Aligned_cols=38 Identities=8% Similarity=0.043 Sum_probs=27.2
Q ss_pred ceeeEEEEecCCCCCChhHHHHHhhh----C---CC----CeeeeccCC
Q psy9745 28 PLTVCCLYISHDRKITKDEIYNIKRQ----L---PR----PYIICSDMN 65 (570)
Q Consensus 28 ~~~i~~iy~p~~~~~~~~~~~~~~~~----~---~~----~~~~~~~~~ 65 (570)
.+.++++=+......+...+-+.+++ . |. |+++.||||
T Consensus 131 g~~f~s~Hl~~~~~~ea~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN 179 (261)
T 1sr4_B 131 TDVFFTVHALATGGSDAVSLIRNIFTTFNSSSSPPERRVYSWMVVGDFN 179 (261)
T ss_dssp TEEEEEEECCTTTTTTHHHHHHHHHHHHHC---CGGGGGCEEEEEEECS
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhcccCCcccCCcEEEEeeCC
Confidence 38888888877665666666555555 4 66 999999995
No 58
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=30.67 E-value=96 Score=21.72 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHhhhcccCCcceEEEEecCHHHHHHHhcCCCCChhHHHHHHHHHHHHHhC
Q psy9745 414 ELIAIEKCLEKIKDVVTHDLVTQNFIICSDSKSSLQALQNVYHVSPLVCDIISTIQDIRDLG 475 (570)
Q Consensus 414 El~ai~~al~~~~~~~~~~~~~~~v~I~tDs~~al~~l~~~~~~~~~~~~~~~~~~~l~~~~ 475 (570)
...||+.||..|.+. +||..|...+-|-+.+.+++..+
T Consensus 9 q~~aILkaLdeaIe~------------------------GPWe~SNFLRvIGKnL~eIRd~F 46 (57)
T 3fxd_A 9 QKETILKALNDAIEK------------------------GPWDKSNFLRVIGKKLIAIRDRF 46 (57)
T ss_dssp HHHHHHHHHHHHHHH------------------------SCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc------------------------CCchHHHHHHHHHHhHHHHHHHH
Confidence 467899999888764 68999988877777777777643
No 59
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=30.36 E-value=21 Score=32.90 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=30.5
Q ss_pred ceeeEEEEecCCCCCC----------hhHHHHHhhhC---CCCeeeeccCCCCC
Q psy9745 28 PLTVCCLYISHDRKIT----------KDEIYNIKRQL---PRPYIICSDMNAHN 68 (570)
Q Consensus 28 ~~~i~~iy~p~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~~~~~ 68 (570)
++.|+|+|.|+..... .+++.+.++++ ..|.+++||||+..
T Consensus 98 ~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~il~GDFN~~~ 151 (256)
T 2jc4_A 98 GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAP 151 (256)
T ss_dssp TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEECCCCC
T ss_pred CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCC
Confidence 8999999999876522 23445555554 78999999999864
No 60
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=29.86 E-value=30 Score=31.32 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=19.5
Q ss_pred HHHHHhhhC-CCCeeeeccCCCCCcccccc
Q psy9745 46 EIYNIKRQL-PRPYIICSDMNAHNTIWGGS 74 (570)
Q Consensus 46 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 74 (570)
++.+.+.+. ..|.+++||||+...-|...
T Consensus 127 ~l~~~l~~~~~~~~Il~GDFN~~~~~~~~~ 156 (238)
T 1vyb_A 127 QVLSDLQRDLDSHTLIMGDFNTPLSTLDRS 156 (238)
T ss_dssp HHHHHTTTTCCTTEEEEEECSSCSSGGGBT
T ss_pred HHHHHHHhccCCCEEEEccCCCCCCccccC
Confidence 344445554 57999999999975445543
No 61
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=28.89 E-value=23 Score=32.75 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=30.5
Q ss_pred ceeeEEEEecCCCCCC----------hhHHHHHhhhC---CCCeeeeccCCCCC
Q psy9745 28 PLTVCCLYISHDRKIT----------KDEIYNIKRQL---PRPYIICSDMNAHN 68 (570)
Q Consensus 28 ~~~i~~iy~p~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~~~~~ 68 (570)
++.|+|+|.|+..... .+++.+.++++ ..|.+++||||+..
T Consensus 98 ~~~v~~~h~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~p~Il~GDFN~~~ 151 (257)
T 2voa_A 98 GIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAP 151 (257)
T ss_dssp TEEEEEEECCCCSCTTSHHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECSCCC
T ss_pred CEEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeeCCCCC
Confidence 8999999999876422 24455555553 68999999999764
No 62
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=28.66 E-value=35 Score=32.68 Aligned_cols=24 Identities=4% Similarity=-0.025 Sum_probs=16.0
Q ss_pred eEEEEEeecCccccceeeEEEEecCC
Q psy9745 14 QVVAARVRSPVLSCPLTVCCLYISHD 39 (570)
Q Consensus 14 ~~~~~~~~~~~~~~~~~i~~iy~p~~ 39 (570)
-++++++.+. +..++++|.=+...
T Consensus 116 Gav~~r~~~~--~~~~~fvn~HL~~~ 139 (282)
T 2imq_X 116 GGIVTSFTIY--NKRFSFTTSRMSDE 139 (282)
T ss_dssp EEEEEEEEET--TEEEEEEEEECCTT
T ss_pred ceEEEEEEEC--CEEEEEEEECCCCC
Confidence 3666777766 55777777777643
No 63
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=26.15 E-value=22 Score=33.35 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=32.7
Q ss_pred ceeeEEEEecCCCCCC---------hhHHHHHhhhCC---CCeeeeccCCCCCc
Q psy9745 28 PLTVCCLYISHDRKIT---------KDEIYNIKRQLP---RPYIICSDMNAHNT 69 (570)
Q Consensus 28 ~~~i~~iy~p~~~~~~---------~~~~~~~~~~~~---~~~~~~~~~~~~~~ 69 (570)
++.|+|||.|++..-+ .+++.+.+++++ .|.+++||||+..+
T Consensus 104 ~~~i~~vy~p~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~ 157 (265)
T 3g91_A 104 DFLLYNIYFPNGAMSEERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHR 157 (265)
T ss_dssp SCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCS
T ss_pred CEEEEEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHcCCCCEEEECccccCCc
Confidence 8999999999887631 345666666664 79999999998753
No 64
>1xr5_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.80A {Human rhinovirus 14} SCOP: e.8.1.4
Probab=25.61 E-value=35 Score=35.49 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=37.9
Q ss_pred eeEeeecccCCCCC----CchhhHHHHhcCcCc----ccC-CCcceeEeeccceeeecCC-CHHHHHHHhc
Q psy9745 176 LMLLVLTDIRQGSS----LSGDLCNIATSDLPQ----YIP-TVVSHGMFVDDLAIFMRGK-DMDHIEETLQ 236 (570)
Q Consensus 176 ~~~~~~~GvPQGs~----LSP~Lf~i~~~~l~~----~~~-~~~~~~~yADD~~i~~~~~-~~~~~~~~l~ 236 (570)
..+.+..|+|+|++ +..++-++++..... .+. ..+.++.|.||.++.+... +.+.+...+.
T Consensus 277 ~v~~~~~G~PSG~p~Tsi~NSi~n~i~i~~a~~~~~~~~~~~~~~~~~yGDD~iis~~~~~~~~~l~~~~~ 347 (466)
T 1xr5_A 277 EIYVVEGGMPSGCSGTSIFNSMINNIIIRTLILDAYKGIDLDKLKILAYGDDLIVSYPYELDPQVLATLGK 347 (466)
T ss_dssp SEEEEESCCCTTSSSHHHHHHHHHHHHHHHHHHHHCSSCCGGGCEEEEETTEEEEECSSCCCHHHHHHHHT
T ss_pred EEEEEeCcCCCCCCchhchhhHHHHHHHHHHHHHHhcCCCccceEEEEECCCCCceeCCCCCHHHHHHHHH
Confidence 45789999999955 455555555544321 111 2467789999999986554 3444444443
No 65
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=24.21 E-value=98 Score=30.11 Aligned_cols=50 Identities=12% Similarity=0.400 Sum_probs=33.1
Q ss_pred CCCChhHHHHHhh-------------hCCCCeeeeccCCCCCccccccccCCCCCChhHHHHHHHh----CCCCeEEEcC
Q psy9745 40 RKITKDEIYNIKR-------------QLPRPYIICSDMNAHNTIWGGSKIDSNGITKDEIYNIKRQ----LPRPYIICSD 102 (570)
Q Consensus 40 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~i~~~----~~~~~Ii~GD 102 (570)
..++++|+..+++ .++.|.+++||.|+.- ..+..++.. ..+.++.+||
T Consensus 21 ~~l~~~~~~~l~~~~~~il~~e~~~~~~~~~i~viGDIHG~~---------------~~L~~ll~~~~~~~~~~~vflGD 85 (309)
T 2ie4_C 21 KQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQF---------------HDLMELFRIGGKSPDTNYLFMGD 85 (309)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSCTTEEECSSEEEECCCTTCH---------------HHHHHHHHHHCCTTTSCEEECSC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEeccCCEEEEecCCCCH---------------HHHHHHHHHcCCCCCCEEEEeCC
Confidence 3556666666554 2456899999997643 455566554 3456889999
Q ss_pred CC
Q psy9745 103 MN 104 (570)
Q Consensus 103 fN 104 (570)
+-
T Consensus 86 ~V 87 (309)
T 2ie4_C 86 YV 87 (309)
T ss_dssp CS
T ss_pred cc
Confidence 86
No 66
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=23.37 E-value=1.2e+02 Score=29.66 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=27.1
Q ss_pred cceEEEEEeecCccccceeeEEEEecCCCCCC---hhHHHHHhhhCC
Q psy9745 12 PLQVVAARVRSPVLSCPLTVCCLYISHDRKIT---KDEIYNIKRQLP 55 (570)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~i~~iy~p~~~~~~---~~~~~~~~~~~~ 55 (570)
+-=+++|++.+. +..++++|.=++.+..-. -+|...|++.+.
T Consensus 124 NKGaV~ir~~~~--~ts~~FVn~HLaAg~~~~~~Rn~d~~~I~~~l~ 168 (316)
T 4a9c_A 124 NKGAVGVSFMFN--GTSFGFVNCHLTSGNEKTARRNQNYLDILRLLS 168 (316)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCC
T ss_pred CCceEEEEEEEC--CcEEEEEEeccccCchHHHHHHHHHHHHHHhCC
Confidence 344677777776 558888888776544321 146777777765
No 67
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=22.59 E-value=34 Score=31.70 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=14.0
Q ss_pred CCCCeEEEcCCCCCCCCc
Q psy9745 93 LPRPYIICSDMNAHNTIW 110 (570)
Q Consensus 93 ~~~~~Ii~GDfN~~~~~w 110 (570)
...++|++||||+.+...
T Consensus 142 ~~~~~Il~GDFN~~~~~~ 159 (268)
T 1ako_A 142 RDNPVLIMGDMNISPTDL 159 (268)
T ss_dssp TTSCEEEEEECCCCCSGG
T ss_pred CCCCEEEEeECCCCCchh
Confidence 457899999999986543
No 68
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=22.53 E-value=39 Score=30.23 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=12.1
Q ss_pred CCCeEEEcCCCCCCCC
Q psy9745 94 PRPYIICSDMNAHNTI 109 (570)
Q Consensus 94 ~~~~Ii~GDfN~~~~~ 109 (570)
..|+|++||||..+..
T Consensus 144 ~~pvIl~GDfN~~~~~ 159 (250)
T 4f1h_A 144 DAIVIFAGDTNLRDAE 159 (250)
T ss_dssp TEEEEEEEECCCCHHH
T ss_pred CCCEEEEEecCCCCcc
Confidence 3578999999987543
No 69
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=21.72 E-value=1.1e+02 Score=30.49 Aligned_cols=49 Identities=16% Similarity=0.324 Sum_probs=32.2
Q ss_pred CCChhHHHHHh-------hhCC------CCeeeeccCCCCCccccccccCCCCCChhHHHHHHHh----CCCCeEEEcCC
Q psy9745 41 KITKDEIYNIK-------RQLP------RPYIICSDMNAHNTIWGGSKIDSNGITKDEIYNIKRQ----LPRPYIICSDM 103 (570)
Q Consensus 41 ~~~~~~~~~~~-------~~~~------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~i~~~----~~~~~Ii~GDf 103 (570)
.++++++..|+ .+-| .|..++||.|+.- .++..++.. ..+.++.+||+
T Consensus 42 ~l~~~~~~~l~~~~~~il~~ep~ll~~~~pi~ViGDIHG~~---------------~dL~~ll~~~g~~~~~~~vfLGD~ 106 (357)
T 3ll8_A 42 RLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQF---------------FDLMKLFEVGGSPANTRYLFLGDY 106 (357)
T ss_dssp CBCHHHHHHHHHHHHHHHHTSCSEEEECSSEEEECCCTTCH---------------HHHHHHHHHHCCTTTCCEEECSCC
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEecccceeeccCCCCH---------------HHHHHHHHhcCCCCCcEEEECCCc
Confidence 45666665544 3334 5899999987664 445556653 34668999998
Q ss_pred C
Q psy9745 104 N 104 (570)
Q Consensus 104 N 104 (570)
-
T Consensus 107 V 107 (357)
T 3ll8_A 107 V 107 (357)
T ss_dssp S
T ss_pred c
Confidence 6
No 70
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=20.22 E-value=41 Score=31.70 Aligned_cols=41 Identities=15% Similarity=0.468 Sum_probs=30.0
Q ss_pred ceeeEEEEecCCCCCC---------hhHHHHHhhhC--CCCeeeeccCCCCC
Q psy9745 28 PLTVCCLYISHDRKIT---------KDEIYNIKRQL--PRPYIICSDMNAHN 68 (570)
Q Consensus 28 ~~~i~~iy~p~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~ 68 (570)
++.|+|+|.|+...-. .++|.+.++++ ..|.|++||||+..
T Consensus 131 ~~~v~~~h~p~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~p~Il~GDFN~~~ 182 (285)
T 2o3h_A 131 SFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAH 182 (285)
T ss_dssp SCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHHHTTSCEEEEEECSCCC
T ss_pred CEEEEEEEcCCCCCcchhHHHHHHHHHHHHHHHHhhccCCCEEEEEECCCCC
Confidence 8999999999875431 14455556554 48999999999753
Done!