BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9748
(1359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J9L|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2JA3|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
Length = 185
Score = 136 bits (342), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 72/133 (54%), Positives = 96/133 (72%), Gaps = 3/133 (2%)
Query: 806 LDSKEEFASTALASDVMQPKHSDPL-SVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQ 864
+++KEEFA LA DVM+P+ +DPL +VLTQDSMTV+DVET++ ET ++GFPVVVSRESQ
Sbjct: 1 MEAKEEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQ 60
Query: 865 YLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAP 924
LVGFVLRRDL ++I NA++ +G+ SI+ F ++ P LR ILD++P
Sbjct: 61 RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLR--NILDLSP 118
Query: 925 ITITDQTPMETVC 937
T+TD TPME V
Sbjct: 119 FTVTDLTPMEIVV 131
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 924 PITITDQTPMETVCGHTFTKQLLFP-ANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPI 982
P+ ++ ++ + + G + L+ NA++ +G+ SI+ F ++ P
Sbjct: 52 PVVVSRES--QRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLK 109
Query: 983 LRLDKILDMAPITITDQTPMETVVDMYKK 1011
LR ILD++P T+TD TPME VVD+++K
Sbjct: 110 LR--NILDLSPFTVTDLTPMEIVVDIFRK 136
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 459 HSDPL-SVLTQDSMTVQDVETNYRERERGGQKYPWALFPAGYSGPKFRCLG 508
+DPL +VLTQDSMTV+DVET E G FP S R +G
Sbjct: 21 RNDPLLTVLTQDSMTVEDVETIISETTYSG-------FPVVVSRESQRLVG 64
>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|B Chain B, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|C Chain C, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|D Chain D, Crystal Structure Of A Eukaryotic Clc Transporter
Length = 632
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
Query: 114 YVFFIAWALLFASLAAGLVRMFAPYACGSGIPEIKTILSGFI--IRGYLGKWTLIIKSVG 171
Y+ ++ + L+ + + A GSG+P++K+ILSGF +R L L K++G
Sbjct: 52 YILYVVSGVALCLLSTFWCAVLSTEAEGSGLPQMKSILSGFYDKMRSALELRVLFAKALG 111
Query: 172 IMLAVSAGLSLGKEGPMVHIASCIGNILSYL--FPKYGRNEAKKREILXXXXXXXXXXXX 229
++ A+ GL +G EGP VHIA I + L F + + A + + L
Sbjct: 112 LICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKELCTDRALRLQTLAAACAVGLASSF 171
Query: 230 XXPIGG 235
P+GG
Sbjct: 172 GAPLGG 177
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 70/123 (56%), Gaps = 8/123 (6%)
Query: 755 LSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFLDS-KEEFA 813
LS VI+FE+TG +R++VP++ + + + VG+A + +Y+ +++ P++ + + +
Sbjct: 392 LSCAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNRS-LYETLVLMKHLPYMPILRRDRS 450
Query: 814 STALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHN-GFPVVVSRESQYLVGFVLR 872
A ++M P +P L DS Q ++ +L++ + FPV+ + YL+G + R
Sbjct: 451 PEMTAREIMHPIEGEPH--LFPDSEP-QHIKGILEKFPNRLVFPVI--DANGYLLGAISR 505
Query: 873 RDL 875
+++
Sbjct: 506 KEI 508
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 1283 TRDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFLDS-KE 1341
TR +S VI+FE+TG +R++VP++ + + + VG+A + +Y+ +++ P++ +
Sbjct: 389 TRALSCAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNRS-LYETLVLMKHLPYMPILRR 447
Query: 1342 EFASTALASDVMQP 1355
+ + A ++M P
Sbjct: 448 DRSPEMTAREIMHP 461
>pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|B Chain B, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|C Chain C, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|D Chain D, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
Length = 473
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 109 AYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKW--TLI 166
A+ L + FI ALL A + LVR FAP A GSGIPEI+ L +R +W L
Sbjct: 75 AFLLWPLAFILSALL-AMVGYFLVRKFAPEAGGSGIPEIEGALEE--LRPV--RWWRVLP 129
Query: 167 IKSVGIMLAVSAGLSLGKEGPMVHIASCIGNILSYLF 203
+K +G M + AG+ LG+EGP V I +G ++ +F
Sbjct: 130 VKFIGGMGTLGAGMVLGREGPTVQIGGNLGRMVLDVF 166
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 413 AYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPE 450
A+ L + FI ALL A + LVR FAP A GSGIPE
Sbjct: 75 AFLLWPLAFILSALL-AMVGYFLVRKFAPEAGGSGIPE 111
>pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3ND0|B Chain B, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3Q17|A Chain A, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
pdb|3Q17|B Chain B, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
Length = 466
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 131 LVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVH 190
L++ FAP GSGIP+I+ L G + + + L IK VG L++ AG+ G EGP +
Sbjct: 92 LMKRFAPDTSGSGIPQIEGHLEGKLPLVW--QRVLPIKLVGGFLSLGAGMLAGFEGPTIQ 149
Query: 191 IASCIGNILSYLFPKYGRNE 210
+ IG + F N+
Sbjct: 150 MGGSIGQMTGGWFKATQENQ 169
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 33.1 bits (74), Expect = 0.99, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 829 PLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEG 888
P ++ +DS ++D LL ET+ PVV + L+G + R ++ A KR +
Sbjct: 106 PSPLVVRDSTNLEDAARLLLETKFRRLPVVDA--DGKLIGILTRGNVVRAALQIKRNADS 163
Query: 889 LRGDSIVRFVQNDTQPQP 906
+ G S QNDT P
Sbjct: 164 ISGRS-----QNDTNLFP 176
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 19/142 (13%)
Query: 895 VRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFTKQLLFP------ 948
+R V + P+PLP P L L+++L A + ++ TP+ ++ LF
Sbjct: 168 MRVVYHARTPKPLP--YPFLSLEELLKEADV-VSLHTPLTPETHRLLNRERLFAMKRGAI 224
Query: 949 ---------ANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQ 999
+ + +E LRG + + T P+PLP P+ L + I +
Sbjct: 225 LLNTARGALVDTEALVEALRG-HLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGR 283
Query: 1000 TPMETVVDMYKKRSISVTNGQK 1021
T E + ++ + ++V G++
Sbjct: 284 TTRERMAEVAVENLLAVLEGRE 305
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 16/164 (9%)
Query: 1060 KNKIKPIVVRLSNTSVRDKWTTASRSKQLYKEKIYINEHLTKANQDLLFKA---KKLKEA 1116
+N +K VVR + D+W S++L++ + N +L+ L + +E+
Sbjct: 678 ENLVKAQVVR----RIEDRWIGFVLSQKLWER--FNNRNLSAGRAQTLVLGWIIDRFQES 731
Query: 1117 N-GYKFVWVRDCKIMIRKNESSRIYVIRNVRDLETYMTLVPPQLSRS-LQEVSVFLDFAG 1174
K VRD +++ +E I+ V + E T +PP + + L + + L F+
Sbjct: 732 RERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRTPLPPYTTETMLSDANRILKFSV 791
Query: 1175 YTHVDVLVSHTDN-----HTSNDARVNFGGQQDIFTFLGKQFEG 1213
+ + +N H ++ RV+ GQ+ +LG F G
Sbjct: 792 KQTMQIAQELFENGLITYHRTDSTRVSDVGQRIAKEYLGDDFVG 835
>pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus
Length = 1054
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 16/164 (9%)
Query: 1060 KNKIKPIVVRLSNTSVRDKWTTASRSKQLYKEKIYINEHLTKANQDLLFKA---KKLKEA 1116
+N +K VVR + D+W S++L++ + N +L+ L + +E+
Sbjct: 678 ENLVKAQVVR----RIEDRWIGFVLSQKLWER--FNNRNLSAGRAQTLVLGWIIDRFQES 731
Query: 1117 N-GYKFVWVRDCKIMIRKNESSRIYVIRNVRDLETYMTLVPPQLSRS-LQEVSVFLDFAG 1174
K VRD +++ +E I+ V + E T +PP + + L + + L F+
Sbjct: 732 RERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRTPLPPYTTETMLSDANRILKFSV 791
Query: 1175 YTHVDVLVSHTDN-----HTSNDARVNFGGQQDIFTFLGKQFEG 1213
+ + +N H ++ RV+ GQ+ +LG F G
Sbjct: 792 KQTMQIAQELFENGLITYHRTDSTRVSDVGQRIAKEYLGDDFVG 835
>pdb|2HT2|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT2|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
Length = 473
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 131 LVRMFAPYACGSGIPEIKTILSGFIIRGYLGKW--TLIIKSVGIMLAVSAGLSLGKEGPM 188
LVR +AP A GSGIPEI+ L +W L +K G + + G+ LG+EGP
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE----DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPT 151
Query: 189 VHIASCIGNILSYLFPKYGRNEAK 212
V I IG ++ +F G +EA+
Sbjct: 152 VQIGGNIGRMVLDIFRLKG-DEAR 174
>pdb|2HT4|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HT4|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
Length = 473
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 131 LVRMFAPYACGSGIPEIKTILSGFIIRGYLGKW--TLIIKSVGIMLAVSAGLSLGKEGPM 188
LVR +AP A GSGIPEI+ L +W L +K G + + G+ LG+EGP
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE----DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPT 151
Query: 189 VHIASCIGNILSYLFPKYGRNEAK 212
V I IG ++ +F G +EA+
Sbjct: 152 VQIGGNIGRMVLDIFRLKG-DEAR 174
>pdb|2HT3|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT3|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
Length = 473
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 131 LVRMFAPYACGSGIPEIKTILSGFIIRGYLGKW--TLIIKSVGIMLAVSAGLSLGKEGPM 188
LVR +AP A GSGIPEI+ L +W L +K G + + G+ LG+EGP
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE----DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPT 151
Query: 189 VHIASCIGNILSYLFPKYGRNEAK 212
V I IG ++ +F G +EA+
Sbjct: 152 VQIGGNIGRMVLDIFRLKG-DEAR 174
>pdb|2HTK|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTK|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
Length = 473
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 131 LVRMFAPYACGSGIPEIKTILSGFIIRGYLGKW--TLIIKSVGIMLAVSAGLSLGKEGPM 188
LVR +AP A GSGIPEI+ L +W L +K G + + G+ LG+EGP
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE----DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPT 151
Query: 189 VHIASCIGNILSYLFPKYGRNEAK 212
V I IG ++ +F G +EA+
Sbjct: 152 VQIGGNIGRMVLDIFRLKG-DEAR 174
>pdb|3NMO|A Chain A, Crystal Structure Of An Engineered Monomeric Clc-Ec1 Cl-H+
Transporter
Length = 465
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 131 LVRMFAPYACGSGIPEIKTILSGFIIRGYLGKW--TLIIKSVGIMLAVSAGLSLGKEGPM 188
LVR +AP A GSGIPEI+ L +W L +K G + + G+ LG+EGP
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE----DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPT 151
Query: 189 VHIASCIGNILSYLFPKYGRNEAK 212
V I IG ++ +F G +EA+
Sbjct: 152 VQIGGNIGRMVLDIFRLKG-DEAR 174
>pdb|2HTL|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2HTL|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
Length = 473
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 131 LVRMFAPYACGSGIPEIKTILSGFIIRGYLGKW--TLIIKSVGIMLAVSAGLSLGKEGPM 188
LVR +AP A GSGIPEI+ L +W L +K G + + G+ LG+EGP
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE----DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPT 151
Query: 189 VHIASCIGNILSYLFPKYGRNEAK 212
V I IG ++ +F G +EA+
Sbjct: 152 VQIGGNIGRMVLDIFRLKG-DEAR 174
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|B Chain B, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|C Chain C, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|D Chain D, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|E Chain E, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|F Chain F, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|2EXW|A Chain A, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
pdb|2EXW|B Chain B, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
Length = 473
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 131 LVRMFAPYACGSGIPEIKTILSGFIIRGYLGKW--TLIIKSVGIMLAVSAGLSLGKEGPM 188
LVR +AP A GSGIPEI+ L +W L +K G + + G+ LG+EGP
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE----DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPT 151
Query: 189 VHIASCIGNILSYLFPKYGRNEAK 212
V I IG ++ +F G +EA+
Sbjct: 152 VQIGGNIGRMVLDIFRLKG-DEAR 174
>pdb|3EJY|A Chain A, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
pdb|3EJY|B Chain B, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
Length = 473
Score = 30.0 bits (66), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 131 LVRMFAPYACGSGIPEIKTILSGFIIRGYLGKW--TLIIKSVGIMLAVSAGLSLGKEGPM 188
LVR +AP A GSGIPEI+ L +W L +K G + + G+ LG+EGP
Sbjct: 96 LVRKYAPEAGGSGIPEIEGALE----DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPT 151
Query: 189 VHIASCIGNILSYLFPKYGRNEAK 212
V I IG ++ +F G +EA+
Sbjct: 152 VQIGGNIGRMVLDIFRLKG-DEAR 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,219,354
Number of Sequences: 62578
Number of extensions: 1622986
Number of successful extensions: 3361
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3272
Number of HSP's gapped (non-prelim): 90
length of query: 1359
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1248
effective length of database: 8,027,179
effective search space: 10017919392
effective search space used: 10017919392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)