Query psy9748
Match_columns 1359
No_of_seqs 840 out of 4724
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 18:32:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0475|consensus 100.0 3E-119 6E-124 1051.4 25.5 626 7-968 64-695 (696)
2 KOG0474|consensus 100.0 1.1E-88 2.5E-93 790.8 14.3 620 7-967 97-746 (762)
3 KOG0476|consensus 100.0 1.2E-67 2.6E-72 623.6 16.5 501 111-881 137-648 (931)
4 PRK01862 putative voltage-gate 100.0 5E-58 1.1E-62 568.9 39.6 486 126-969 81-572 (574)
5 cd03684 ClC_3_like ClC-3-like 100.0 1.7E-59 3.7E-64 564.2 22.7 414 115-806 29-445 (445)
6 KOG0475|consensus 100.0 8.5E-56 1.8E-60 518.8 8.3 232 1025-1356 314-552 (696)
7 cd01036 ClC_euk Chloride chann 100.0 5.4E-53 1.2E-57 504.5 22.9 371 111-795 34-416 (416)
8 cd03685 ClC_6_like ClC-6-like 100.0 3.6E-52 7.7E-57 503.1 28.7 375 114-809 78-462 (466)
9 cd03683 ClC_1_like ClC-1-like 100.0 6.3E-52 1.4E-56 496.4 28.0 382 111-808 42-426 (426)
10 cd01031 EriC ClC chloride chan 100.0 1.2E-44 2.5E-49 431.7 23.2 366 114-799 37-402 (402)
11 PRK01610 putative voltage-gate 100.0 4.4E-44 9.6E-49 427.5 25.9 356 124-801 60-417 (418)
12 COG0038 EriC Chloride channel 100.0 2.5E-44 5.5E-49 431.9 23.2 357 130-807 80-437 (443)
13 PF00654 Voltage_CLC: Voltage 100.0 2.5E-44 5.4E-49 422.3 17.4 350 124-787 2-355 (355)
14 cd01034 EriC_like ClC chloride 100.0 9.3E-44 2E-48 422.2 20.4 118 124-244 36-157 (390)
15 PRK05277 chloride channel prot 100.0 2.6E-43 5.6E-48 424.2 22.0 372 114-801 44-417 (438)
16 cd01033 ClC_like Putative ClC 100.0 1.7E-41 3.8E-46 402.2 20.3 335 128-789 52-387 (388)
17 cd00400 Voltage_gated_ClC CLC 100.0 2E-37 4.3E-42 367.5 21.6 343 118-782 41-383 (383)
18 cd03682 ClC_sycA_like ClC sycA 100.0 1.1E-35 2.3E-40 352.0 23.1 113 125-243 41-153 (378)
19 KOG0476|consensus 100.0 1.3E-35 2.7E-40 352.7 -0.5 159 1165-1358 438-599 (931)
20 PRK03655 putative ion channel 100.0 3.7E-32 7.9E-37 324.0 21.9 114 122-245 63-176 (414)
21 KOG0474|consensus 100.0 1.7E-30 3.8E-35 305.0 0.7 129 1202-1357 463-592 (762)
22 cd03684 ClC_3_like ClC-3-like 99.9 1.3E-24 2.8E-29 262.4 10.4 121 1202-1337 318-445 (445)
23 cd03685 ClC_6_like ClC-6-like 99.9 2E-23 4.4E-28 253.4 3.5 116 1202-1340 347-462 (466)
24 cd01036 ClC_euk Chloride chann 99.9 5.1E-23 1.1E-27 246.9 4.4 106 1202-1326 307-416 (416)
25 cd03683 ClC_1_like ClC-1-like 99.8 2.5E-21 5.4E-26 233.0 3.2 117 1202-1339 306-426 (426)
26 cd01031 EriC ClC chloride chan 99.8 2.4E-20 5.2E-25 223.2 3.7 107 1202-1330 296-402 (402)
27 PRK05277 chloride channel prot 99.7 1.4E-18 3.1E-23 210.1 9.3 105 1202-1332 309-417 (438)
28 PRK01862 putative voltage-gate 99.7 4.7E-18 1E-22 212.2 6.6 127 1202-1357 327-457 (574)
29 TIGR03520 GldE gliding motilit 99.7 1.6E-16 3.6E-21 190.3 18.0 202 813-1054 188-397 (408)
30 PRK15094 magnesium/cobalt effl 99.7 5.8E-16 1.3E-20 177.9 18.0 200 813-1054 64-271 (292)
31 PRK11573 hypothetical protein; 99.6 2.5E-15 5.5E-20 180.2 17.6 201 813-1053 184-392 (413)
32 COG1253 TlyC Hemolysins and re 99.6 2.7E-14 5.9E-19 172.6 19.2 202 813-1054 203-411 (429)
33 cd00400 Voltage_gated_ClC CLC 99.6 7.2E-16 1.6E-20 183.7 1.6 101 673-789 84-187 (383)
34 PRK01610 putative voltage-gate 99.5 2.5E-15 5.3E-20 180.8 4.5 109 1202-1332 309-417 (418)
35 PF00654 Voltage_CLC: Voltage 99.5 1.4E-15 3.1E-20 179.4 -2.6 96 1202-1318 260-355 (355)
36 COG4536 CorB Putative Mg2+ and 99.5 3.7E-13 7.9E-18 153.4 13.7 199 813-1051 197-402 (423)
37 COG0038 EriC Chloride channel 99.4 4.8E-14 1E-18 170.7 4.7 110 1202-1337 323-436 (443)
38 cd03682 ClC_sycA_like ClC sycA 99.4 8.2E-13 1.8E-17 157.4 8.0 92 1202-1326 287-378 (378)
39 COG2524 Predicted transcriptio 99.3 5.2E-12 1.1E-16 137.9 11.4 120 813-969 169-292 (294)
40 COG4535 CorC Putative Mg2+ and 99.3 2.9E-12 6.3E-17 138.0 8.6 198 814-1052 65-269 (293)
41 COG4109 Predicted transcriptio 99.3 3E-12 6.6E-17 144.4 8.5 123 815-974 187-312 (432)
42 COG3448 CBS-domain-containing 99.3 6.2E-11 1.4E-15 131.2 16.3 128 813-969 242-373 (382)
43 PRK10892 D-arabinose 5-phospha 99.2 3.2E-11 6.8E-16 141.0 12.0 145 790-966 169-323 (326)
44 PRK11543 gutQ D-arabinose 5-ph 99.2 4.4E-11 9.6E-16 139.3 12.2 144 791-966 165-318 (321)
45 COG3620 Predicted transcriptio 99.2 1.1E-10 2.4E-15 119.5 10.6 121 814-969 63-185 (187)
46 PRK07807 inosine 5-monophospha 99.1 5.6E-10 1.2E-14 136.2 14.2 120 811-969 84-206 (479)
47 cd04619 CBS_pair_6 The CBS dom 99.1 8.6E-10 1.9E-14 108.1 12.5 107 832-965 4-113 (114)
48 cd01034 EriC_like ClC chloride 99.1 3.9E-10 8.4E-15 135.2 11.4 129 129-269 253-382 (390)
49 TIGR00400 mgtE Mg2+ transporte 99.1 6.9E-10 1.5E-14 135.3 12.3 148 814-1014 129-285 (449)
50 cd04623 CBS_pair_10 The CBS do 99.0 1.5E-09 3.2E-14 105.0 12.0 106 832-966 4-113 (113)
51 cd04641 CBS_pair_28 The CBS do 99.0 1.2E-09 2.6E-14 107.9 11.6 113 832-966 4-120 (120)
52 cd04618 CBS_pair_5 The CBS dom 99.0 1.3E-09 2.8E-14 105.2 11.2 91 831-965 3-97 (98)
53 cd04608 CBS_pair_PALP_assoc Th 99.0 8.9E-10 1.9E-14 110.6 10.3 108 832-967 5-124 (124)
54 cd04603 CBS_pair_KefB_assoc Th 99.0 1.7E-09 3.7E-14 105.7 12.0 104 832-965 4-110 (111)
55 TIGR01137 cysta_beta cystathio 99.0 1.8E-09 3.9E-14 131.8 14.3 140 794-967 311-453 (454)
56 PRK07107 inosine 5-monophospha 99.0 4E-09 8.6E-14 129.5 16.0 163 767-967 47-219 (502)
57 cd04630 CBS_pair_17 The CBS do 99.0 4E-09 8.8E-14 103.1 12.8 106 831-965 3-113 (114)
58 cd04643 CBS_pair_30 The CBS do 99.0 2.5E-09 5.5E-14 104.2 11.3 112 832-966 4-116 (116)
59 cd04631 CBS_pair_18 The CBS do 99.0 3E-09 6.5E-14 105.2 11.7 117 832-966 4-125 (125)
60 cd04613 CBS_pair_SpoIVFB_EriC_ 99.0 3.2E-09 7E-14 102.8 11.2 105 832-965 4-113 (114)
61 cd04593 CBS_pair_EriC_assoc_ba 99.0 3.9E-09 8.4E-14 103.2 11.8 106 832-965 4-114 (115)
62 cd04639 CBS_pair_26 The CBS do 99.0 3.5E-09 7.6E-14 102.6 11.1 104 832-966 4-111 (111)
63 cd04803 CBS_pair_15 The CBS do 99.0 3.9E-09 8.5E-14 104.0 10.9 115 832-966 4-122 (122)
64 cd04609 CBS_pair_PALP_assoc2 T 98.9 6E-09 1.3E-13 100.3 11.7 105 832-966 4-110 (110)
65 cd04596 CBS_pair_DRTGG_assoc T 98.9 5.1E-09 1.1E-13 101.4 11.2 99 832-965 5-107 (108)
66 TIGR01302 IMP_dehydrog inosine 98.9 5.4E-09 1.2E-13 127.5 13.9 117 814-967 78-200 (450)
67 cd04600 CBS_pair_HPP_assoc Thi 98.9 5.2E-09 1.1E-13 103.4 11.3 115 832-965 5-123 (124)
68 cd04629 CBS_pair_16 The CBS do 98.9 5.2E-09 1.1E-13 101.7 10.8 106 832-965 4-113 (114)
69 PLN02274 inosine-5'-monophosph 98.9 1E-08 2.2E-13 126.2 15.1 116 819-970 103-224 (505)
70 cd04636 CBS_pair_23 The CBS do 98.9 5.9E-09 1.3E-13 104.9 10.8 125 832-966 4-132 (132)
71 cd04607 CBS_pair_NTP_transfera 98.9 1.1E-08 2.5E-13 99.6 12.4 104 832-965 5-112 (113)
72 PRK05567 inosine 5'-monophosph 98.9 1.1E-08 2.5E-13 125.9 15.1 154 816-1017 87-244 (486)
73 cd04605 CBS_pair_MET2_assoc Th 98.9 1.4E-08 3E-13 98.2 12.7 102 832-965 5-109 (110)
74 cd04617 CBS_pair_4 The CBS dom 98.9 9.6E-09 2.1E-13 101.4 11.7 106 832-965 4-117 (118)
75 cd04588 CBS_pair_CAP-ED_DUF294 98.9 1.5E-08 3.2E-13 98.0 12.7 102 832-965 4-109 (110)
76 cd04615 CBS_pair_2 The CBS dom 98.9 1.3E-08 2.9E-13 98.8 12.4 104 833-965 5-112 (113)
77 cd04583 CBS_pair_ABC_OpuCA_ass 98.9 1.2E-08 2.7E-13 98.1 12.0 99 833-965 6-108 (109)
78 cd04632 CBS_pair_19 The CBS do 98.9 1.2E-08 2.6E-13 101.9 12.1 120 832-966 4-128 (128)
79 cd04624 CBS_pair_11 The CBS do 98.9 1.4E-08 3.1E-13 98.5 12.2 103 833-965 5-111 (112)
80 TIGR01303 IMP_DH_rel_1 IMP deh 98.9 2E-08 4.3E-13 122.7 16.1 154 812-1016 84-240 (475)
81 cd04586 CBS_pair_BON_assoc Thi 98.9 6.3E-09 1.4E-13 105.1 9.8 126 832-965 5-134 (135)
82 cd01033 ClC_like Putative ClC 98.9 2.4E-09 5.1E-14 128.4 7.6 139 122-265 243-381 (388)
83 cd04595 CBS_pair_DHH_polyA_Pol 98.9 1.7E-08 3.7E-13 97.7 11.9 101 832-965 5-109 (110)
84 PRK14869 putative manganese-de 98.9 9.8E-09 2.1E-13 128.3 13.0 196 816-1018 68-372 (546)
85 cd04585 CBS_pair_ACT_assoc2 Th 98.9 1.5E-08 3.3E-13 99.1 11.6 114 832-965 4-121 (122)
86 cd04622 CBS_pair_9 The CBS dom 98.9 2.4E-08 5.1E-13 96.9 12.6 105 832-965 4-112 (113)
87 cd04801 CBS_pair_M50_like This 98.9 1.2E-08 2.5E-13 99.7 10.5 103 832-965 4-113 (114)
88 PTZ00314 inosine-5'-monophosph 98.9 1.2E-08 2.7E-13 125.4 12.8 164 763-968 42-218 (495)
89 cd04800 CBS_pair_CAP-ED_DUF294 98.9 2.9E-08 6.2E-13 96.2 12.7 103 832-965 4-110 (111)
90 cd04604 CBS_pair_KpsF_GutQ_ass 98.9 1.6E-08 3.5E-13 98.1 11.0 104 833-965 6-113 (114)
91 cd04642 CBS_pair_29 The CBS do 98.8 2.1E-08 4.6E-13 100.0 11.9 119 832-965 4-125 (126)
92 cd04627 CBS_pair_14 The CBS do 98.8 3.1E-08 6.7E-13 98.3 13.0 114 832-964 4-121 (123)
93 cd04626 CBS_pair_13 The CBS do 98.8 2.1E-08 4.5E-13 97.3 11.5 103 832-965 4-110 (111)
94 cd04637 CBS_pair_24 The CBS do 98.8 3.3E-08 7.1E-13 97.6 12.5 116 832-966 4-122 (122)
95 cd04625 CBS_pair_12 The CBS do 98.8 4E-08 8.6E-13 95.3 12.8 105 832-965 4-111 (112)
96 cd04633 CBS_pair_20 The CBS do 98.8 2.5E-08 5.5E-13 98.1 11.4 114 832-966 4-121 (121)
97 cd04582 CBS_pair_ABC_OpuCA_ass 98.8 2.9E-08 6.4E-13 95.3 11.6 98 833-965 5-105 (106)
98 cd04612 CBS_pair_SpoIVFB_EriC_ 98.8 3.4E-08 7.3E-13 95.3 12.1 103 832-965 4-110 (111)
99 cd04601 CBS_pair_IMPDH This cd 98.8 2E-08 4.3E-13 96.8 10.3 100 832-965 5-109 (110)
100 cd04620 CBS_pair_7 The CBS dom 98.8 3.1E-08 6.7E-13 96.7 11.6 103 833-965 5-114 (115)
101 cd04611 CBS_pair_PAS_GGDEF_DUF 98.8 4.7E-08 1E-12 94.4 12.7 104 832-965 4-110 (111)
102 cd04602 CBS_pair_IMPDH_2 This 98.8 3.5E-08 7.7E-13 96.6 11.9 102 832-965 5-113 (114)
103 cd04590 CBS_pair_CorC_HlyC_ass 98.8 4E-08 8.6E-13 95.2 12.1 104 831-965 3-110 (111)
104 cd04610 CBS_pair_ParBc_assoc T 98.8 3.5E-08 7.6E-13 94.8 11.6 99 832-965 5-106 (107)
105 cd04591 CBS_pair_EriC_assoc_eu 98.8 2.8E-08 6.1E-13 96.7 11.0 97 831-966 4-105 (105)
106 cd04587 CBS_pair_CAP-ED_DUF294 98.8 5E-08 1.1E-12 94.6 12.7 106 832-965 4-112 (113)
107 cd04621 CBS_pair_8 The CBS dom 98.8 3.3E-08 7.2E-13 100.8 11.9 128 832-965 4-134 (135)
108 cd04599 CBS_pair_GGDEF_assoc2 98.8 3.9E-08 8.4E-13 94.1 11.6 98 832-965 4-104 (105)
109 cd04635 CBS_pair_22 The CBS do 98.8 2.7E-08 5.8E-13 98.0 10.7 114 832-965 4-121 (122)
110 COG2905 Predicted signal-trans 98.8 1.6E-08 3.4E-13 121.2 10.5 121 815-969 148-271 (610)
111 cd04802 CBS_pair_3 The CBS dom 98.8 6.1E-08 1.3E-12 94.0 12.8 104 832-965 4-111 (112)
112 cd04606 CBS_pair_Mg_transporte 98.8 2.5E-08 5.4E-13 96.7 9.8 97 835-966 3-108 (109)
113 cd04589 CBS_pair_CAP-ED_DUF294 98.8 5.5E-08 1.2E-12 94.3 12.3 105 832-966 4-111 (111)
114 cd04640 CBS_pair_27 The CBS do 98.7 5.6E-08 1.2E-12 97.2 11.1 110 832-965 4-125 (126)
115 cd04614 CBS_pair_1 The CBS dom 98.7 6.4E-08 1.4E-12 92.8 10.7 89 832-965 4-95 (96)
116 cd04594 CBS_pair_EriC_assoc_ar 98.7 1.1E-07 2.3E-12 91.8 12.3 96 833-965 5-103 (104)
117 cd02205 CBS_pair The CBS domai 98.7 9.7E-08 2.1E-12 90.8 11.8 105 832-965 4-112 (113)
118 cd04584 CBS_pair_ACT_assoc Thi 98.7 1.1E-07 2.4E-12 93.3 11.4 113 832-965 4-120 (121)
119 cd04634 CBS_pair_21 The CBS do 98.7 1.2E-07 2.7E-12 97.3 12.1 125 832-965 4-142 (143)
120 TIGR00393 kpsF KpsF/GutQ famil 98.7 8.3E-08 1.8E-12 109.0 11.1 111 816-959 155-268 (268)
121 cd04638 CBS_pair_25 The CBS do 98.6 2.4E-07 5.1E-12 89.3 11.7 99 832-965 4-105 (106)
122 COG3448 CBS-domain-containing 98.6 2.2E-08 4.8E-13 111.4 4.9 167 836-1038 201-373 (382)
123 COG0517 FOG: CBS domain [Gener 98.6 3.9E-07 8.5E-12 88.7 12.5 104 831-964 9-117 (117)
124 cd04598 CBS_pair_GGDEF_assoc T 98.6 3.1E-07 6.7E-12 90.1 11.8 107 833-965 5-118 (119)
125 COG2239 MgtE Mg/Co/Ni transpor 98.6 1.3E-07 2.9E-12 114.2 9.0 120 815-974 131-259 (451)
126 PF00571 CBS: CBS domain CBS d 98.2 3.8E-06 8.1E-11 72.7 6.3 52 916-968 1-56 (57)
127 cd04592 CBS_pair_EriC_assoc_eu 98.1 1.8E-05 3.9E-10 81.1 10.4 103 832-951 4-118 (133)
128 COG2524 Predicted transcriptio 98.1 9.7E-06 2.1E-10 89.7 8.2 94 912-1016 170-267 (294)
129 PF00571 CBS: CBS domain CBS d 97.9 1.4E-05 3E-10 69.2 5.6 56 818-880 1-56 (57)
130 COG2905 Predicted signal-trans 97.9 1.7E-05 3.7E-10 95.8 6.7 235 914-1176 149-398 (610)
131 cd04641 CBS_pair_28 The CBS do 97.9 5.5E-05 1.2E-09 74.7 9.1 93 923-1016 2-98 (120)
132 PRK10892 D-arabinose 5-phospha 97.8 5.5E-05 1.2E-09 88.8 9.7 98 912-1016 200-302 (326)
133 cd04592 CBS_pair_EriC_assoc_eu 97.8 0.00016 3.4E-09 74.2 10.8 93 923-1015 2-110 (133)
134 PRK10070 glycine betaine trans 97.8 0.00017 3.8E-09 87.1 12.9 120 816-970 274-395 (400)
135 COG3620 Predicted transcriptio 97.7 4.1E-05 8.9E-10 79.4 5.8 98 913-1018 64-165 (187)
136 cd04618 CBS_pair_5 The CBS dom 97.7 0.00011 2.3E-09 71.1 8.1 69 924-1016 3-75 (98)
137 PRK03655 putative ion channel 97.7 4.2E-06 9.1E-11 101.3 -2.4 83 1202-1317 312-398 (414)
138 PRK11543 gutQ D-arabinose 5-ph 97.7 0.00013 2.8E-09 85.4 9.5 95 913-1015 196-295 (321)
139 KOG1764|consensus 97.6 0.00038 8.2E-09 83.6 12.0 120 831-970 239-361 (381)
140 TIGR01186 proV glycine betaine 97.6 0.00057 1.2E-08 81.7 13.3 104 834-970 255-360 (363)
141 TIGR01137 cysta_beta cystathio 97.6 0.00013 2.8E-09 89.5 7.9 98 912-1016 333-433 (454)
142 cd04613 CBS_pair_SpoIVFB_EriC_ 97.6 0.00036 7.8E-09 67.5 9.3 84 923-1014 2-89 (114)
143 cd04600 CBS_pair_HPP_assoc Thi 97.5 0.00039 8.6E-09 68.6 9.5 93 922-1015 2-101 (124)
144 cd04619 CBS_pair_6 The CBS dom 97.5 0.00051 1.1E-08 67.3 9.9 85 924-1015 3-91 (114)
145 KOG2550|consensus 97.5 0.00016 3.5E-09 84.4 7.1 103 833-967 120-227 (503)
146 TIGR00393 kpsF KpsF/GutQ famil 97.5 0.00027 5.9E-09 80.4 8.9 95 913-1015 154-252 (268)
147 cd04617 CBS_pair_4 The CBS dom 97.5 0.00059 1.3E-08 67.3 10.1 86 923-1015 2-92 (118)
148 cd04630 CBS_pair_17 The CBS do 97.5 0.00066 1.4E-08 66.3 10.1 86 923-1015 2-92 (114)
149 cd04593 CBS_pair_EriC_assoc_ba 97.5 0.00066 1.4E-08 66.3 10.1 85 923-1015 2-90 (115)
150 cd04608 CBS_pair_PALP_assoc Th 97.5 0.0004 8.6E-09 69.8 8.6 83 922-1012 2-88 (124)
151 cd04624 CBS_pair_11 The CBS do 97.5 0.00076 1.6E-08 65.3 10.2 85 923-1015 2-89 (112)
152 cd04605 CBS_pair_MET2_assoc Th 97.5 0.00072 1.6E-08 65.3 9.8 81 922-1014 2-86 (110)
153 cd04629 CBS_pair_16 The CBS do 97.5 0.0006 1.3E-08 66.2 9.3 88 923-1015 2-92 (114)
154 cd04607 CBS_pair_NTP_transfera 97.4 0.00079 1.7E-08 65.5 10.1 85 923-1015 3-90 (113)
155 cd04623 CBS_pair_10 The CBS do 97.4 0.001 2.2E-08 64.2 10.5 86 923-1014 2-90 (113)
156 cd04612 CBS_pair_SpoIVFB_EriC_ 97.4 0.00076 1.6E-08 65.0 9.5 84 923-1015 2-88 (111)
157 cd04627 CBS_pair_14 The CBS do 97.4 0.0006 1.3E-08 67.6 9.0 91 924-1015 3-100 (123)
158 cd04643 CBS_pair_30 The CBS do 97.4 0.00049 1.1E-08 67.0 7.8 88 923-1013 2-93 (116)
159 cd04615 CBS_pair_2 The CBS dom 97.4 0.00096 2.1E-08 64.7 9.6 85 923-1014 2-89 (113)
160 cd04588 CBS_pair_CAP-ED_DUF294 97.4 0.0011 2.4E-08 63.9 10.0 83 923-1015 2-87 (110)
161 cd04603 CBS_pair_KefB_assoc Th 97.4 0.00093 2E-08 65.3 9.3 83 924-1015 3-88 (111)
162 cd04621 CBS_pair_8 The CBS dom 97.4 0.001 2.2E-08 67.9 10.0 91 923-1014 2-112 (135)
163 cd04585 CBS_pair_ACT_assoc2 Th 97.3 0.001 2.2E-08 64.9 9.5 91 923-1015 2-99 (122)
164 cd04639 CBS_pair_26 The CBS do 97.3 0.00094 2E-08 64.6 9.1 83 923-1015 2-88 (111)
165 cd04584 CBS_pair_ACT_assoc Thi 97.3 0.0009 2E-08 65.6 9.0 91 923-1014 2-98 (121)
166 PRK07807 inosine 5-monophospha 97.3 0.00066 1.4E-08 83.8 9.8 91 913-1016 88-181 (479)
167 cd04582 CBS_pair_ABC_OpuCA_ass 97.3 0.0011 2.3E-08 63.6 9.3 79 923-1015 2-83 (106)
168 cd04631 CBS_pair_18 The CBS do 97.3 0.00087 1.9E-08 66.2 8.9 92 923-1015 2-102 (125)
169 cd04632 CBS_pair_19 The CBS do 97.3 0.00089 1.9E-08 66.8 8.7 92 923-1015 2-103 (128)
170 cd04636 CBS_pair_23 The CBS do 97.3 0.0013 2.8E-08 66.2 9.8 92 923-1015 2-110 (132)
171 cd04626 CBS_pair_13 The CBS do 97.3 0.0014 2.9E-08 63.6 9.6 84 924-1015 3-89 (111)
172 cd04589 CBS_pair_CAP-ED_DUF294 97.3 0.0016 3.5E-08 63.1 10.0 85 923-1015 2-89 (111)
173 cd04800 CBS_pair_CAP-ED_DUF294 97.3 0.0015 3.3E-08 63.1 9.8 83 923-1014 2-88 (111)
174 cd04586 CBS_pair_BON_assoc Thi 97.3 0.00091 2E-08 67.6 8.5 94 922-1015 2-113 (135)
175 cd04803 CBS_pair_15 The CBS do 97.3 0.0014 3.1E-08 64.4 9.6 91 923-1014 2-98 (122)
176 cd04583 CBS_pair_ABC_OpuCA_ass 97.3 0.0016 3.5E-08 62.4 9.8 80 923-1014 3-85 (109)
177 cd02205 CBS_pair The CBS domai 97.2 0.0021 4.6E-08 60.9 9.9 84 923-1014 2-89 (113)
178 cd04642 CBS_pair_29 The CBS do 97.2 0.0014 3E-08 65.4 9.0 93 923-1015 2-103 (126)
179 cd04587 CBS_pair_CAP-ED_DUF294 97.2 0.0025 5.5E-08 61.6 10.2 84 923-1014 2-89 (113)
180 PRK05567 inosine 5'-monophosph 97.2 0.0033 7.2E-08 78.1 13.7 89 915-1016 88-181 (486)
181 cd04614 CBS_pair_1 The CBS dom 97.2 0.0014 3.1E-08 62.8 8.2 68 923-1015 2-73 (96)
182 TIGR01302 IMP_dehydrog inosine 97.2 0.0037 8.1E-08 77.0 13.9 89 914-1015 80-176 (450)
183 cd04801 CBS_pair_M50_like This 97.2 0.0023 5.1E-08 62.3 9.8 83 924-1015 3-91 (114)
184 COG0517 FOG: CBS domain [Gener 97.2 0.0029 6.3E-08 61.5 10.5 89 919-1016 4-96 (117)
185 cd04635 CBS_pair_22 The CBS do 97.2 0.0013 2.8E-08 64.7 8.0 93 923-1015 2-99 (122)
186 cd04637 CBS_pair_24 The CBS do 97.1 0.0014 2.9E-08 64.7 7.9 91 923-1015 2-99 (122)
187 cd04802 CBS_pair_3 The CBS dom 97.1 0.0039 8.5E-08 60.3 10.2 84 923-1014 2-89 (112)
188 cd04633 CBS_pair_20 The CBS do 97.1 0.0023 5E-08 62.8 8.6 92 923-1015 2-99 (121)
189 cd04609 CBS_pair_PALP_assoc2 T 97.0 0.0026 5.7E-08 61.0 8.8 79 924-1011 3-85 (110)
190 cd04611 CBS_pair_PAS_GGDEF_DUF 97.0 0.0038 8.2E-08 60.1 9.8 82 924-1015 3-88 (111)
191 TIGR01303 IMP_DH_rel_1 IMP deh 97.0 0.0026 5.7E-08 78.5 10.7 89 913-1016 87-179 (475)
192 cd04604 CBS_pair_KpsF_GutQ_ass 97.0 0.0031 6.7E-08 61.0 9.1 83 924-1014 4-90 (114)
193 cd04595 CBS_pair_DHH_polyA_Pol 97.0 0.0037 8.1E-08 60.4 9.7 82 923-1015 3-88 (110)
194 PF03258 Baculo_FP: Baculoviru 97.0 0.00023 5E-09 75.9 1.2 85 1066-1153 92-186 (214)
195 cd04596 CBS_pair_DRTGG_assoc T 97.0 0.003 6.5E-08 61.1 8.7 79 923-1015 3-85 (108)
196 cd04634 CBS_pair_21 The CBS do 97.0 0.0041 9E-08 63.9 10.2 91 923-1014 2-120 (143)
197 cd04590 CBS_pair_CorC_HlyC_ass 97.0 0.004 8.7E-08 60.1 9.4 83 923-1016 2-89 (111)
198 cd04625 CBS_pair_12 The CBS do 97.0 0.0048 1E-07 59.7 9.8 85 923-1015 2-90 (112)
199 TIGR00400 mgtE Mg2+ transporte 96.9 0.0016 3.4E-08 80.2 7.7 89 913-1015 130-227 (449)
200 cd04622 CBS_pair_9 The CBS dom 96.9 0.0048 1E-07 59.7 9.6 83 923-1014 2-89 (113)
201 TIGR03520 GldE gliding motilit 96.9 0.003 6.6E-08 76.8 9.2 92 913-1016 190-287 (408)
202 cd04599 CBS_pair_GGDEF_assoc2 96.8 0.0059 1.3E-07 58.3 9.0 78 923-1015 2-83 (105)
203 PRK07107 inosine 5-monophospha 96.8 0.0031 6.6E-08 78.5 8.7 83 923-1016 106-196 (502)
204 cd04620 CBS_pair_7 The CBS dom 96.8 0.0079 1.7E-07 58.6 9.5 84 923-1015 2-92 (115)
205 PRK15094 magnesium/cobalt effl 96.7 0.0037 8E-08 72.8 7.9 113 913-1036 66-192 (292)
206 cd04591 CBS_pair_EriC_assoc_eu 96.7 0.0071 1.5E-07 58.9 8.7 73 925-1015 5-83 (105)
207 cd04598 CBS_pair_GGDEF_assoc T 96.7 0.0053 1.1E-07 60.1 7.7 85 924-1014 3-92 (119)
208 PTZ00314 inosine-5'-monophosph 96.7 0.0055 1.2E-07 76.2 9.4 88 915-1015 97-193 (495)
209 PRK14869 putative manganese-de 96.6 0.00081 1.8E-08 84.6 2.1 134 814-965 244-390 (546)
210 cd04606 CBS_pair_Mg_transporte 96.6 0.0072 1.6E-07 58.5 8.1 77 926-1015 1-85 (109)
211 cd04601 CBS_pair_IMPDH This cd 96.6 0.0079 1.7E-07 57.8 8.1 80 923-1015 3-87 (110)
212 COG4109 Predicted transcriptio 96.6 0.0082 1.8E-07 69.6 9.3 93 913-1018 187-284 (432)
213 cd04640 CBS_pair_27 The CBS do 96.6 0.0045 9.8E-08 61.8 6.5 89 923-1015 2-102 (126)
214 cd04610 CBS_pair_ParBc_assoc T 96.6 0.012 2.5E-07 56.4 9.0 78 922-1014 2-83 (107)
215 cd04594 CBS_pair_EriC_assoc_ar 96.6 0.0096 2.1E-07 57.3 8.4 75 925-1015 4-82 (104)
216 PLN02274 inosine-5'-monophosph 96.5 0.0075 1.6E-07 75.1 9.4 86 917-1015 103-197 (505)
217 cd04597 CBS_pair_DRTGG_assoc2 96.5 0.0039 8.4E-08 61.8 5.5 55 816-877 58-112 (113)
218 cd04597 CBS_pair_DRTGG_assoc2 96.5 0.0035 7.6E-08 62.1 5.0 51 914-965 58-112 (113)
219 cd04602 CBS_pair_IMPDH_2 This 96.4 0.014 3E-07 57.1 8.6 81 923-1015 3-91 (114)
220 cd04638 CBS_pair_25 The CBS do 96.2 0.028 6.1E-07 53.9 9.2 78 924-1014 3-83 (106)
221 KOG1764|consensus 96.1 0.031 6.8E-07 67.4 11.2 165 832-1015 165-334 (381)
222 COG2239 MgtE Mg/Co/Ni transpor 95.8 0.019 4.1E-07 70.4 7.8 96 913-1022 131-238 (451)
223 smart00116 CBS Domain in cysta 95.5 0.03 6.5E-07 44.7 5.5 43 924-967 2-48 (49)
224 smart00116 CBS Domain in cysta 94.8 0.077 1.7E-06 42.3 6.0 45 833-879 4-48 (49)
225 TIGR03415 ABC_choXWV_ATP choli 94.7 0.085 1.9E-06 63.8 8.5 109 813-969 271-381 (382)
226 PRK11573 hypothetical protein; 93.8 0.21 4.5E-06 61.2 9.2 115 913-1036 186-314 (413)
227 COG1253 TlyC Hemolysins and re 92.2 0.58 1.2E-05 57.6 9.8 94 913-1016 205-304 (429)
228 COG4175 ProV ABC-type proline/ 91.1 0.34 7.3E-06 56.6 5.7 111 814-969 272-384 (386)
229 KOG2550|consensus 89.9 0.33 7.2E-06 57.8 4.4 59 814-879 169-227 (503)
230 TIGR01186 proV glycine betaine 88.5 0.81 1.8E-05 55.2 6.6 57 817-881 303-359 (363)
231 PF02994 Transposase_22: L1 tr 88.3 0.41 8.9E-06 57.8 3.9 127 1002-1129 181-321 (370)
232 KOG2118|consensus 87.9 0.51 1.1E-05 59.1 4.5 126 813-970 201-330 (498)
233 COG4536 CorB Putative Mg2+ and 82.7 1.6 3.4E-05 52.1 4.8 117 913-1037 199-328 (423)
234 PRK10070 glycine betaine trans 80.8 2.9 6.3E-05 51.2 6.5 57 817-881 338-394 (400)
235 PF03471 CorC_HlyC: Transporte 77.6 2.1 4.6E-05 40.3 3.1 58 991-1052 5-67 (81)
236 COG4535 CorC Putative Mg2+ and 55.4 14 0.00031 41.8 4.3 90 914-1013 67-162 (293)
237 TIGR03415 ABC_choXWV_ATP choli 44.2 40 0.00087 41.2 6.2 44 833-880 337-380 (382)
238 COG1125 OpuBA ABC-type proline 32.9 49 0.0011 38.4 4.1 24 943-966 285-308 (309)
239 PF10518 TAT_signal: TAT (twin 30.9 38 0.00083 25.6 1.9 23 212-234 3-25 (26)
240 COG4175 ProV ABC-type proline/ 26.7 98 0.0021 37.1 5.2 46 832-880 338-383 (386)
No 1
>KOG0475|consensus
Probab=100.00 E-value=2.9e-119 Score=1051.41 Aligned_cols=626 Identities=48% Similarity=0.775 Sum_probs=561.8
Q ss_pred hhheeeeeehhhHHhhhcccccccccccccccccccCCCCCCCcCCCCCCCccccCcccccccchhhhhhcccccccCCC
Q psy9748 7 LAGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQGERLKPLQQHQQHFYYDILNNYEDVNKP 86 (1359)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1359)
.+|..|+++|+.++| |+|+|+|+.+||+|+++||. .+++++.|+
T Consensus 64 ~ag~la~~~di~~~w--D~k~G~C~~~~~~n~~~CC~-----t~~~~~~c~----------------------------- 107 (696)
T KOG0475|consen 64 AAGFLAGLADILTSW--DLKEGYCTPNFWLNHEFCCS-----TFTEDDVCK----------------------------- 107 (696)
T ss_pred HHHHhhHHHHhhcch--hhccCcccchhhhhhhhhee-----eeecCccch-----------------------------
Confidence 578899999999999 99999999999999999993 355677898
Q ss_pred CcccccHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCChHHHHHHHhccccccccCchhhh
Q psy9748 87 GGVLLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLI 166 (1359)
Q Consensus 87 ~~~~~~W~~ws~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGIpeik~~l~g~~~~~~l~~~tl~ 166 (1359)
+|..|.+.++......+.+.++|++|+.|++.|+.+++.+++.++|+|+||||||||++++|+.+++|++.||++
T Consensus 108 -----~~~~w~~~~~~~~~w~~~~~~~~l~y~~~al~fa~la~~lv~~~AP~A~gSGIpEIK~ilSGf~~~~~lg~~tl~ 182 (696)
T KOG0475|consen 108 -----EWFFWCEHLGLDFSWTGHYIVSYLIYVLWALLFAFLAVSLVKVVAPYACGSGIPEIKTILSGFIIRGFLGKWTLL 182 (696)
T ss_pred -----hhhhhHHHhccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhheehhhhcCCCccceeeeccchhhhhhhHHHHh
Confidence 699999988777666566779999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHhhhcccCCCChhhHHHHHHhhHhhhhhhhcCCCccceeeeeeecccc
Q psy9748 167 IKSVGIMLAVSAGLSLGKEGPMVHIASCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFF 246 (1359)
Q Consensus 167 ~K~i~~~lav~sGls~GkEGP~vhiga~ig~~l~~~~~~~~~~~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l~~~ 246 (1359)
+|+++++++++||+|+|||||+||+|+||||+++++|++|++|+.++||+++|++|||||++||||||||||++|+
T Consensus 183 iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEe---- 258 (696)
T KOG0475|consen 183 IKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEE---- 258 (696)
T ss_pred hhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhh----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeehhhhhhhhhhccccccccccccccccccccccccccccccccccccccccccccchhhhhHhhhhhhHhhhhhcc
Q psy9748 247 LFFRIFHLEMEGRRRRGRPRLRWVDMIHNDIEKEVSYYFPLKTLWRSFPFSIYIRSIPTKWMCDKFELAGSVAGIIDIGS 326 (1359)
Q Consensus 247 ~~~~~~~~~~~~~~~~Ar~~~r~~~G~~~~f~~~~s~~~~~~~~w~~f~~~i~~~~~~~~w~~~~~~~~~~iA~~i~i~~ 326 (1359)
.+++||++++|++|+| ++.|+.++
T Consensus 259 ----------------------------------v~~~fp~ktlw~sff~-------------------aLsAv~~L--- 282 (696)
T KOG0475|consen 259 ----------------------------------VSYYFPLKTLWRSFFC-------------------ALSAVTAL--- 282 (696)
T ss_pred ----------------------------------hhhcCCccchHHHHHH-------------------HHHHHHHH---
Confidence 4688999999999999 89999998
Q ss_pred ccccccccccCCcccccccccccCCCCCCcccCCCCCCCCCcccccccceeeccccccccCCCCCcccccchhhhhhhcc
Q psy9748 327 SWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQPKPLQQHQQHFHYDILNNYEDVNKPPGVLLQWLTWAEVMGS 406 (1359)
Q Consensus 327 ~wl~dlk~G~c~~~~~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~~~~~W~~w~~~~~~ 406 (1359)
+ .+|||++. +.++|+| +|+.| |
T Consensus 283 ------~----------------------~i~pf~~~--------~~vLf~V-------~Y~~~------W--------- 304 (696)
T KOG0475|consen 283 ------R----------------------SINPFGNS--------RLVLFYV-------DYDRP------W--------- 304 (696)
T ss_pred ------e----------------------eecccCCC--------ceEEEEE-------eccCC------c---------
Confidence 6 68999988 8999999 89998 9
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCCCCCCCCccccccccccchhhhhhhhhhccC
Q psy9748 407 NKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEALTHPHSLHSDPLSVLTQDSMTVQDVETNYRERERG 486 (1359)
Q Consensus 407 ~~~~~~~~~~e~i~fil~gv~~~gl~g~l~~~~~~~~~g~Gi~eik~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 486 (1359)
++.|+++|+++|+ |||+.|.++.+.|.++ +++||....
T Consensus 305 -------~~~EL~pFi~LGi-fgGl~G~~~ir~n~~~----------------------------------~~~rK~~~l 342 (696)
T KOG0475|consen 305 -------SLFELLPFILLGI-FGGLWGAFFIRLNIRF----------------------------------CRFRKSSKL 342 (696)
T ss_pred -------ccccchHHHHHHH-hhhHHHHHHHHHHHHH----------------------------------Hhccchhhc
Confidence 9999999999999 9999999988877655 888888743
Q ss_pred CCCCCccccCCCCCCCcccccccchhhhhhhcCCCcccccccccceeEEEeecccccchhhhhhhcccCCCcccCCCCCc
Q psy9748 487 GQKYPWALFPAGYSGPKFRCLGLDREKAEKEMGNGRTLSLSEDEGIIDITTSGTMNERHLAEQINISHGSGFLDSDEIPG 566 (1359)
Q Consensus 487 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~e~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (1359)
.+||+ +| +++++++|+
T Consensus 343 -g~~pv------------------------------------~e--v~~vt~iTa------------------------- 358 (696)
T KOG0475|consen 343 -GKFPV------------------------------------LE--VVFVTLVTA------------------------- 358 (696)
T ss_pred -cCCcc------------------------------------hh--HHHHHHHHH-------------------------
Confidence 55554 46 888888888
Q ss_pred ccccccccchhhhhhhhhccccchhhhcccchhhHHhhhccccccchhhhhhhccccccccccccCCCcccccccccccc
Q psy9748 567 IGQYEDFHTIDWQRDLARDRMRHRYIVKRKQNSIIDLIKGAHDAWSGWLCVLLVGLVTDKFIGCCNFFECFAFSDYVINH 646 (1359)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~c~~~~~~~l~~~~~~~ 646 (1359)
+++| +|||++. ++.+++++ ||++ |++.++..+|+.
T Consensus 359 iIs~-----------------~np~~r~-~~~e~i~~------------------Lf~~-----C~~~~s~~l~~~---- 393 (696)
T KOG0475|consen 359 IISL-----------------FNPETRF-NMSELITI------------------LFNK-----CSPSSSTSLPET---- 393 (696)
T ss_pred HHHh-----------------cCHHHHh-hHHHHHHH------------------HHhh-----cCCcccccCccc----
Confidence 8888 9999999 78888888 9999 988766554432
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCcccceeehHHHHHHHHHhHHHHHHhHHhhhhh-hhhhhh
Q psy9748 647 NATSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGRLYLALFEQNKQGTYLSFYFIYFSVSL-VVIMFE 725 (1359)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~K~~lt~~T~G~g~pgGif~PSL~iGA~~Gr~~g~~~~~~~~~~-~~~~~~ 725 (1359)
.+|.+.++|++++++|+++|++|||+++|+|+|+|||++||++||++|.+....+++- |.++
T Consensus 394 ---------------~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~f-- 456 (696)
T KOG0475|consen 394 ---------------TVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLF-- 456 (696)
T ss_pred ---------------chHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCcccc--
Confidence 2578899999999999999999999999999999999999999999998776654321 2221
Q ss_pred ccCCccccCHHHHHHHHhhccccceechhHHHHHHHHHhcCCcchHHHHhHHHHHHHHHHhhccCCCcchhhhhccCCCC
Q psy9748 726 LTGGVRYIVPLMAAAMASKWHKKLKTLFRLSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPF 805 (1359)
Q Consensus 726 c~~~~~~i~pg~yAaaa~~a~l~gvtr~pls~vvi~~ElTG~~~~ilP~miav~is~~v~~~~~~~sIYd~~I~lng~Pf 805 (1359)
+..|++||+||+.|++|.|+|+||+|+|+|||||||||+++|++|+|+|+++||||+|.+++.+|||++|++|||||
T Consensus 457 ---g~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~ 533 (696)
T KOG0475|consen 457 ---GLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPF 533 (696)
T ss_pred ---chhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCC
Confidence 56899999999777777799999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhcccccccccccccCCC-CeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhh
Q psy9748 806 LDSKEEFASTALASDVMQPKHSD-PLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKR 884 (1359)
Q Consensus 806 Ld~k~e~l~~~~V~DVMt~~~~~-pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~ 884 (1359)
++.|++.. +....++|.+.+.+ ++.++.+.++|++|++.+|++++++|||||-++++++++|+|.|+||..++.++++
T Consensus 534 l~~k~e~~-~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~ 612 (696)
T KOG0475|consen 534 LDSKSEFS-STLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARK 612 (696)
T ss_pred cccccccc-cchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhcc
Confidence 99988877 77789999998765 68888889999999999999999999999999899999999999999999998887
Q ss_pred hccCCCCccceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeH
Q psy9748 885 TLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRG 960 (1359)
Q Consensus 885 ~~~~~~~~s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITr 960 (1359)
.++....++. +|. +..|....+.++.++++++|+.+|++|.+++|++.+++ ||| |++.|+++| ++.|+||+
T Consensus 613 ~q~~~~~~~~-~f~--~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~-~F~~lg~~~~~v~~~G-~l~Giitk 687 (696)
T KOG0475|consen 613 IQSFIVTTSI-YFN--DPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVD-LFRKLGLRQILVTKNG-ILLGIITK 687 (696)
T ss_pred ccccceeccc-ccC--CCCccccCCCCCCcCceeeccCCcccccccCcHHHHHH-HHHhhCceEEEEccCC-eeEeeeeh
Confidence 7665554444 665 33444455667889999999999999999999999999 999 778888777 99999999
Q ss_pred HHHHHHHh
Q psy9748 961 DSIVRFVQ 968 (1359)
Q Consensus 961 kDILr~l~ 968 (1359)
||++++.+
T Consensus 688 kd~l~~~r 695 (696)
T KOG0475|consen 688 KDCLRHTR 695 (696)
T ss_pred HHHHHhhc
Confidence 99999864
No 2
>KOG0474|consensus
Probab=100.00 E-value=1.1e-88 Score=790.85 Aligned_cols=620 Identities=27% Similarity=0.398 Sum_probs=496.5
Q ss_pred hhheeeeeehhhHHhhhcccccccccccccccccccCCCCCCCcCCCCCCCccccCcccccccchhhhhhcccccccCCC
Q psy9748 7 LAGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQGERLKPLQQHQQHFYYDILNNYEDVNKP 86 (1359)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1359)
..|++|.+||+..+-+.++|++.-.... ++|| +. . .|
T Consensus 97 ~TgLva~fidl~Ven~ag~Kf~~v~~~v----~~~~-s~-------~-g~------------------------------ 133 (762)
T KOG0474|consen 97 CTGLVALFIDLFVENFAGLKFGVVQNSV----EECR-SQ-------K-GC------------------------------ 133 (762)
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHH----HHhh-hc-------c-cc------------------------------
Confidence 4689999999999999999998765443 5555 10 0 01
Q ss_pred CcccccHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCChHHHHHHHhccccccccCchhhh
Q psy9748 87 GGVLLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLI 166 (1359)
Q Consensus 87 ~~~~~~W~~ws~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGIpeik~~l~g~~~~~~l~~~tl~ 166 (1359)
++..++.|+.+.+.++.+++.++.+++|-|+||||||||++|||+++++.+.++|++
T Consensus 134 -----------------------~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAGSGIPevK~YLNGV~iP~ivrl~TL~ 190 (762)
T KOG0474|consen 134 -----------------------LALSLLVLLGFNLVLVFLASVLVAYIAPVAAGSGIPEVKCYLNGVKIPGIVRLRTLI 190 (762)
T ss_pred -----------------------HHHHHHHHHHHhHHHHHHHHHHHHeechhccCCCCchhhhhhcCccCcceeehhhhH
Confidence 456788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHhhh----------cccCCCChhhHHHHHHhhHhhhhhhhcCCCccce
Q psy9748 167 IKSVGIMLAVSAGLSLGKEGPMVHIASCIGNILSYL----------FPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGV 236 (1359)
Q Consensus 167 ~K~i~~~lav~sGls~GkEGP~vhiga~ig~~l~~~----------~~~~~~~~~~~r~ll~agaaAGvaa~FgaPigGv 236 (1359)
+|++|.+.+|++|+.+|||||+||.|+|+|+.++|- ..+|.+|++|||++++||+||||||+|+||+|||
T Consensus 191 ~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvGGv 270 (762)
T KOG0474|consen 191 VKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVGGV 270 (762)
T ss_pred HhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCccce
Confidence 999999999999999999999999999999999862 1145679999999999999999999999999999
Q ss_pred eeeeeecccccceeehhhhhhhhhhccccccccccccccccccccccccccccccccccccccccccccchhhhhHhhhh
Q psy9748 237 LFSLEEVSFFLFFRIFHLEMEGRRRRGRPRLRWVDMIHNDIEKEVSYYFPLKTLWRSFPFSIYIRSIPTKWMCDKFELAG 316 (1359)
Q Consensus 237 lFalE~l~~~~~~~~~~~~~~~~~~~Ar~~~r~~~G~~~~f~~~~s~~~~~~~~w~~f~~~i~~~~~~~~w~~~~~~~~~ 316 (1359)
|||||| .++||....+||.||+ +
T Consensus 271 LFaLEE--------------------------------------~aS~Wnq~L~WR~fFs-------------------s 293 (762)
T KOG0474|consen 271 LFALEE--------------------------------------GASWWNQALLWRTFFS-------------------S 293 (762)
T ss_pred EEEech--------------------------------------hhHHHHhhHHHHHHHH-------------------h
Confidence 999999 4678888999999999 7
Q ss_pred hhHhhhhhccccccccccccCCcccccccccccCCCCCCcccCCCCCCCCCcccccccceeeccccccccCCCCCccccc
Q psy9748 317 SVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQPKPLQQHQQHFHYDILNNYEDVNKPPGVLLQ 396 (1359)
Q Consensus 317 ~iA~~i~i~~~wl~dlk~G~c~~~~~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~~~~~ 396 (1359)
+++++++ ..|+..++.|.|- .|+.+ .+..|.+ |+.+ ..
T Consensus 294 ~i~~f~l--~~~i~~~~~G~~g--------------------~f~~~--------GLi~f~v--------f~~~----~~ 331 (762)
T KOG0474|consen 294 AIVAFVL--RAFILSCLSGKCG--------------------LFGKG--------GLINFDV--------FDGP----VD 331 (762)
T ss_pred HHHHHhH--HHHHHHHhcCchh--------------------ccCCc--------ceEEecc--------cCCc----cc
Confidence 8888877 2344444444332 23333 3444433 4333 12
Q ss_pred chhhhhhhccCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCCCCCCCCccccccccccchhh
Q psy9748 397 WLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEALTHPHSLHSDPLSVLTQDSMTVQDV 476 (1359)
Q Consensus 397 W~~w~~~~~~~~~~~~~~~~e~i~fil~gv~~~gl~g~l~~~~~~~~~g~Gi~eik~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1359)
| ++.|+++|+++|+ +||++|.+|+.++.+.
T Consensus 332 y----------------~~~el~~f~~iGV-iGGlLGalfN~Ln~~~--------------------------------- 361 (762)
T KOG0474|consen 332 Y----------------HIHELPPFLLIGV-IGGLLGALFNYLNLKK--------------------------------- 361 (762)
T ss_pred c----------------ccccccceeEeeh-hhhhHHHHHHHHHHHH---------------------------------
Confidence 4 7789999999999 9999999999998776
Q ss_pred hhhhhhhccCCCCCCccccCCCCCCCcccccccchhhhhhhcCCCcccccccccceeEEEeecccccchhhhhhhcccCC
Q psy9748 477 ETNYRERERGGQKYPWALFPAGYSGPKFRCLGLDREKAEKEMGNGRTLSLSEDEGIIDITTSGTMNERHLAEQINISHGS 556 (1359)
Q Consensus 477 ~~~~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~e~~~~~~~~~t~~~~~~~~~~~~~~~~ 556 (1359)
..+|++... .+ ..+++| .++++++|+ .+++|.
T Consensus 362 -~~~r~~~~k---~k---------------------------------~~kvle--a~~Vs~~ts---------~~af~l 393 (762)
T KOG0474|consen 362 -VLRRYNYEK---GK---------------------------------IGKVLE--ALLVSLVTS---------VLAFGL 393 (762)
T ss_pred -HHHHHhccC---ch---------------------------------HHHHHH--HHHHHHHHH---------HHHhhh
Confidence 455555332 11 124677 677778877 455665
Q ss_pred CcccCCCCCcccccccccchhhhhhhhhccccchhhhcccchhhHHhhhccccccchhhhhhhccccccccccccCCCcc
Q psy9748 557 GFLDSDEIPGIGQYEDFHTIDWQRDLARDRMRHRYIVKRKQNSIIDLIKGAHDAWSGWLCVLLVGLVTDKFIGCCNFFEC 636 (1359)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~c~~~~~ 636 (1359)
+|+ +++.++ |+.- ++. . + . -++|++++|
T Consensus 394 ~~l--------------------~~C~P~--~~~~-----~~~---~------------------~-p---~f~Cp~~~Y 421 (762)
T KOG0474|consen 394 PFL--------------------ADCQPC--PPSI-----TEG---Q------------------C-P---TFFCPDGEY 421 (762)
T ss_pred HHH--------------------hcCCCC--CCCc-----ccc---c------------------C-c---cccCCCCch
Confidence 544 222211 1100 000 0 0 0 146999999
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCcccceeehHHHHHHHHHhHHHHHHhHHhh
Q psy9748 637 FAFSDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGRLYLALFEQNKQGTYLSFYFIYFS 716 (1359)
Q Consensus 637 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~K~~lt~~T~G~g~pgGif~PSL~iGA~~Gr~~g~~~~~~~ 716 (1359)
++++.+.+|+++++.+++++++. +.+ .+..|+++++..++++++|||+.+|+|+|+|++.+||++||++|.++...+
T Consensus 422 NdlAtL~fnt~ddaVrnLFh~~~--~ef-~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~~l~~~~ 498 (762)
T KOG0474|consen 422 NDLATLFFNTNDDAVRNLFHSPT--NEF-GILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGMLLGSYT 498 (762)
T ss_pred hHHHHHHcCCcHHHHHHHhcCCC--Ccc-chhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHHHHHHhh
Confidence 99999999999999999998765 333 345688899999999999999999999999999999999999999887652
Q ss_pred hhhhhhhhhccCCccccCHHHHHHHHhhccccceechhHHHHHHHHHhcCCcchHHHHhHHHHHHHHHHhhccCCCcchh
Q psy9748 717 VSLVVIMFELTGGVRYIVPLMAAAMASKWHKKLKTLFRLSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDA 796 (1359)
Q Consensus 717 ~~~~~~~~~c~~~~~~i~pg~yAaaa~~a~l~gvtr~pls~vvi~~ElTG~~~~ilP~miav~is~~v~~~~~~~sIYd~ 796 (1359)
.++||.||..|++|+|||++|||+|++||++|+| +..+.+|+|++.++||||+|.|+ +||||.
T Consensus 499 ---------------~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~VGD~FN-egiYd~ 561 (762)
T KOG0474|consen 499 ---------------NIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVLLIAKTVGDSFN-EGIYDI 561 (762)
T ss_pred ---------------ccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHHHHhhhh-hhhHHH
Confidence 4799999966666669999999999999999999 78899999999999999999998 899999
Q ss_pred hhhccCCCCCcchh-hhcccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCC---CeEEEEEEh
Q psy9748 797 HIMLNAYPFLDSKE-EFASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRES---QYLVGFVLR 872 (1359)
Q Consensus 797 ~I~lng~PfLd~k~-e~l~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d---~~LVG~Isr 872 (1359)
+++++|.|+|+++. ..+++++|+|+|+++ ++.++....++.+.++|+++.|+||||||+.+. +++.|+|.|
T Consensus 562 ~i~LkgvP~Le~~pe~~mr~L~a~ev~~~p-----vi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILR 636 (762)
T KOG0474|consen 562 IIQLKGVPFLEWEPEPYMRNLTAGEVMSKP-----VICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILR 636 (762)
T ss_pred hhhccCCccccCCCchHhhhhhHhhhccCC-----eEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHH
Confidence 99999999999875 578999999999985 567889999999999999999999999997544 689999999
Q ss_pred HHHHHHHHhhhhhccC-CCCcc--ceecccCCCCCCC---------CCCCCcccccccccccCCeEecCCCCHHHHHHHh
Q psy9748 873 RDLNLAIANAKRTLEG-LRGDS--IVRFVQNDTQPQP---------LPGAPPILRLDKILDMAPITITDQTPMETVCGHT 940 (1359)
Q Consensus 873 ~DLl~aL~~~~~~~~~-~~~~s--~v~F~~~~~~p~~---------~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~m 940 (1359)
++|...|++....++. ...+. .-.|..+|..++. ..+..-.+|+.++|+++|.+|++++++..++. +
T Consensus 637 shl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~-l 715 (762)
T KOG0474|consen 637 SHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFI-L 715 (762)
T ss_pred HHHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHH-H
Confidence 9999998775443211 11111 1112111211111 11222357999999999999999999999999 9
Q ss_pred hc----ceeEEEcCCCcEEEEEeHHHHHHHH
Q psy9748 941 FT----KQLLFPANAKRTLEGLRGDSIVRFV 967 (1359)
Q Consensus 941 Fr----R~LpVVdegGrLvGIITrkDILr~l 967 (1359)
|| ||++|+++.++++||+||+|+.++-
T Consensus 716 FR~lGLRhLlVv~~~~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 716 FRQLGLRHLLVVPKTNRVVGILTRKDLARYR 746 (762)
T ss_pred HHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence 99 9999999888999999999999764
No 3
>KOG0476|consensus
Probab=100.00 E-value=1.2e-67 Score=623.62 Aligned_cols=501 Identities=28% Similarity=0.412 Sum_probs=372.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCChHHHHHHHhccccccccCchhhhHHHHHHHHHhhcCCCCCCcchHHH
Q psy9748 111 TLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVH 190 (1359)
Q Consensus 111 ~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGIpeik~~l~g~~~~~~l~~~tl~~K~i~~~lav~sGls~GkEGP~vh 190 (1359)
.+.|+.|+.+.+.+..+++.++++++|.|-||||||+|+||+|+.+++||+.||++.|.+|+.+++|||+++|||||+||
T Consensus 137 yl~yl~Wv~y~v~Li~fSA~f~h~iapQAvGSGIPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVH 216 (931)
T KOG0476|consen 137 YLAYLSWVGYPVGLVLFSAGFCHYIAPQAVGSGIPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVH 216 (931)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeccccccCCChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchh
Confidence 47888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc----ccCCCChhhHHHHHHhhHhhhhhhhcCCCccceeeeeeecccccceeehhhhhhhhhhccccc
Q psy9748 191 IASCIGNILSYLF----PKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFFLFFRIFHLEMEGRRRRGRPR 266 (1359)
Q Consensus 191 iga~ig~~l~~~~----~~~~~~~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l~~~~~~~~~~~~~~~~~~~Ar~~ 266 (1359)
+++.++++++|+. ..+..||.+.-|+|+||+|.|||+.|+||+|||||++|+
T Consensus 217 iasivA~~l~k~~a~~~~g~~enesR~~EmLaaaCAVGVactFsAPiGgVLfSIEv------------------------ 272 (931)
T KOG0476|consen 217 IASIVAALLSKVTACQFGGFFENESRNMEMLAAACAVGVACTFSAPIGGVLFSIEV------------------------ 272 (931)
T ss_pred HHHHHHHHHHHHHHhhccccccCcchHHHHHHHHhhhhheeeecCccceeEEEEEE------------------------
Confidence 9999999998864 234589999999999999999999999999999999999
Q ss_pred cccccccccccccccccccccccccccccccccccccccchhhhhHhhhhhhHhhhhhccccccccccccCCcccccccc
Q psy9748 267 LRWVDMIHNDIEKEVSYYFPLKTLWRSFPFSIYIRSIPTKWMCDKFELAGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKE 346 (1359)
Q Consensus 267 ~r~~~G~~~~f~~~~s~~~~~~~~w~~f~~~i~~~~~~~~w~~~~~~~~~~iA~~i~i~~~wl~dlk~G~c~~~~~~~~~ 346 (1359)
+|.||.++++||.||+ +.+++++- | |...|..+.+
T Consensus 273 --------------TS~yFAVrnYWRGFFA-------------------AtcsA~vF---------R---~lavf~v~~~ 307 (931)
T KOG0476|consen 273 --------------TSTYFAVRNYWRGFFA-------------------ATCSAFVF---------R---LLAVFFVEAE 307 (931)
T ss_pred --------------eeeeeeHHHHHHHHHH-------------------HHhHHHHH---------H---HHHHHcccch
Confidence 7899999999999999 66666665 2 2222222111
Q ss_pred cccCCCCCCcccCCCCCCCCCcccccccceeeccccccccCCCCCcccccchhhhhhhccCccccccchhHHHHHHHHHH
Q psy9748 347 QCCWSSNETSFEDTGNCSQPKPLQQHQQHFHYDILNNYEDVNKPPGVLLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWAL 426 (1359)
Q Consensus 347 ~cc~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~~~~~W~~w~~~~~~~~~~~~~~~~e~i~fil~gv 426 (1359)
. ++ ..+|+- +|..+ +.-..-|++.|+++|+
T Consensus 308 ~--------tI---------------tA~yqT-------~F~~d--------------------~~F~~~ELp~FallGl 337 (931)
T KOG0476|consen 308 V--------TI---------------TALYQT-------SFRPD--------------------FPFDVQELPFFALLGL 337 (931)
T ss_pred h--------hh---------------HHHHhc-------cCCCC--------------------CCCCHHHhHHHHHHHH
Confidence 1 00 011222 11000 0015679999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccCCCccccCCCCCCCCCccccccccccchhhhhhhhhhccCCCCCCccccCCCCCCCcccc
Q psy9748 427 LFASLAAGLVRMFAPYACGSGIPEALTHPHSLHSDPLSVLTQDSMTVQDVETNYRERERGGQKYPWALFPAGYSGPKFRC 506 (1359)
Q Consensus 427 ~~~gl~g~l~~~~~~~~~g~Gi~eik~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~~~~~~ 506 (1359)
++|+.|.+|.++..+. ...++ .|...+++-.+.+. -||..
T Consensus 338 -~cGllGa~fVylhR~i-------------------vlf~R-----kn~~~~~~f~k~~l--lyp~~------------- 377 (931)
T KOG0476|consen 338 -LCGLLGALFVYLHRRI-------------------VLFLR-----KNRYAKKLFQKSRL--LYPAF------------- 377 (931)
T ss_pred -HHhcccceeeeeeeee-------------------eeeeh-----hhHHHHHHHhhCcc--HHHHH-------------
Confidence 9999999888766554 00001 01111221111110 12211
Q ss_pred cccchhhhhhhcCCCcccccccccceeEEEeecccccchhhhhhhcccCCCcccCCCCCcccccccccchhhhhhhhhcc
Q psy9748 507 LGLDREKAEKEMGNGRTLSLSEDEGIIDITTSGTMNERHLAEQINISHGSGFLDSDEIPGIGQYEDFHTIDWQRDLARDR 586 (1359)
Q Consensus 507 ~~~~~~~~~~~~~n~~~~~~~~~e~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (1359)
- ..+++.+| -++| +.+| +
T Consensus 378 -----------------------~--a~v~sslt-----------fP~G-----------lG~f-----------~---- 395 (931)
T KOG0476|consen 378 -----------------------I--ALVFSSLT-----------FPPG-----------LGQF-----------L---- 395 (931)
T ss_pred -----------------------H--HHHHhhee-----------cCCc-----------cccc-----------c----
Confidence 0 11122222 1222 2233 0
Q ss_pred ccchhhhcccchhhHHhhhccccccchhhhhhhccccccccccccC---CCccccccccccccCCCCCCCCCCCCCCCch
Q psy9748 587 MRHRYIVKRKQNSIIDLIKGAHDAWSGWLCVLLVGLVTDKFIGCCN---FFECFAFSDYVINHNATSTSNPTTSEAGPGV 663 (1359)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~c~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1359)
-.++ ...+.+.. +|.. |. .......|.... ...+.. + .+-
T Consensus 396 -aG~l----~f~etl~~------------------fF~N-----ctw~~~~~~~~~~~~~~-----~~hW~~--p--~g~ 438 (931)
T KOG0476|consen 396 -AGRL----SFRETLVD------------------FFDN-----CTWWVQTNDSELCPAHI-----LTHWYH--P--EGD 438 (931)
T ss_pred -cccc----cHHhHHHH------------------Hhhc-----CeeeecCCCcCCCChhh-----hhhhcC--C--CCc
Confidence 0000 12222222 5655 43 111222332211 111111 0 122
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCcccceeehHHHHHHHHHhHHHHHHhHHhhhhhhhhhhhccCC-ccccCHHHHHHHH
Q psy9748 664 YTAVWLLMITLVLKLVLTVFTFGIKVPCGRLYLALFEQNKQGTYLSFYFIYFSVSLVVIMFELTGG-VRYIVPLMAAAMA 742 (1359)
Q Consensus 664 ~~~~~~L~~~~v~K~~lt~~T~G~g~pgGif~PSL~iGA~~Gr~~g~~~~~~~~~~~~~~~~c~~~-~~~i~pg~yAaaa 742 (1359)
.+.+..|++++++|+++.+++.-+-+|+|+|+|.+++||++||++|..+..++|... -.+| ...|.||.||.+|
T Consensus 439 ~~~f~tL~lf~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~Gi-----~~~gi~~~I~PG~YAVVG 513 (931)
T KOG0476|consen 439 VSIFGTLVLFFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEGI-----RGGGITPPIHPGGYAVVG 513 (931)
T ss_pred eeeHHHHHHHHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeeccccc-----ccCCccCccccchhhhhh
Confidence 345678999999999999999999999999999999999999999987776665321 1122 4579999999555
Q ss_pred hhccccceechhHHHHHHHHHhcCCcchHHHHhHHHHHHHHHHhhccCCCcchhhhhccCCCCCcch---hhhccccccc
Q psy9748 743 SKWHKKLKTLFRLSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFLDSK---EEFASTALAS 819 (1359)
Q Consensus 743 ~~a~l~gvtr~pls~vvi~~ElTG~~~~ilP~miav~is~~v~~~~~~~sIYd~~I~lng~PfLd~k---~e~l~~~~V~ 819 (1359)
++||-|+||+ |+|..||+||+||++..++|+|+|+++|+.|+..+. .||||..|+.|++|||.+- ....+++.|+
T Consensus 514 AAAfsGaVTH-TvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~LQ-PSiYDSII~IKklPYLPDlpps~~~~h~v~VE 591 (931)
T KOG0476|consen 514 AAAFSGAVTH-TVSVAVIIFELTGQLCHILPVMIAVLLANAVAASLQ-PSIYDSIIRIKKLPYLPDLPPSRSSVHTVKVE 591 (931)
T ss_pred hhhhccceee-eeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHhC-cchhhheeeeccCCcCCCCCCcccceeEEEee
Confidence 5555777775 999999999999999999999999999999999997 7999999999999999864 3467889999
Q ss_pred ccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHh
Q psy9748 820 DVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIAN 881 (1359)
Q Consensus 820 DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~ 881 (1359)
|+|.++ +..+..++|.+|+.+.++.+....||+|++.++..|+|.|.|++|...++.
T Consensus 592 ~iMV~d-----v~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 592 HIMVTD-----VKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred eecccc-----ceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 999997 556789999999999999998999999999999999999999999988754
No 4
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=5e-58 Score=568.86 Aligned_cols=486 Identities=18% Similarity=0.221 Sum_probs=358.0
Q ss_pred HHHHHHHHHhccCCCCCChHH-HHHHHhccccccccCchhhhHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHhhhcc
Q psy9748 126 SLAAGLVRMFAPYACGSGIPE-IKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVHIASCIGNILSYLFP 204 (1359)
Q Consensus 126 ~~a~~l~~~~~p~a~GsGIpe-ik~~l~g~~~~~~l~~~tl~~K~i~~~lav~sGls~GkEGP~vhiga~ig~~l~~~~~ 204 (1359)
.++.++.++..+.+++.|+++ ++.+.++ ++.+++++.+.|++++++++++|+|+|||||+||+|+++|+.++|++
T Consensus 81 li~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~- 156 (574)
T PRK01862 81 FLAGCVLLLANRGARKGGKTDYMEAVALG---DGVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFA- 156 (574)
T ss_pred HHHHHHHHHhccccccCCcHHHHHHHHcC---CCCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHh-
Confidence 333445555556666555555 5555444 46689999999999999999999999999999999999999999998
Q ss_pred cCCCChhhHHHHHHhhHhhhhhhhcCCCccceeeeeeecccccceeehhhhhhhhhhccccccccccccccccccccccc
Q psy9748 205 KYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFFLFFRIFHLEMEGRRRRGRPRLRWVDMIHNDIEKEVSYY 284 (1359)
Q Consensus 205 ~~~~~~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l~~~~~~~~~~~~~~~~~~~Ar~~~r~~~G~~~~f~~~~s~~ 284 (1359)
+.+++++|.+++||+|||+|++|+||+||++|++|+++.+
T Consensus 157 --~~~~~~~r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~-------------------------------------- 196 (574)
T PRK01862 157 --HFDPPRLRLLVACGAAAGITSAYNAPIAGAFFVAEIVLGS-------------------------------------- 196 (574)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhh--------------------------------------
Confidence 6788899999999999999999999999999999996332
Q ss_pred cccccccccccccccccccccchhhhhHhhhhhhHhhhhhccccccccccccCCcccccccccccCCCCCCcccCCCCCC
Q psy9748 285 FPLKTLWRSFPFSIYIRSIPTKWMCDKFELAGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCS 364 (1359)
Q Consensus 285 ~~~~~~w~~f~~~i~~~~~~~~w~~~~~~~~~~iA~~i~i~~~wl~dlk~G~c~~~~~~~~~~cc~~~~~~~~~~~~~~~ 364 (1359)
+..+.++.++++ +++|+++. +. +. +.
T Consensus 197 ~~~~~~~~~~~a-------------------s~~a~~v~---------~~----------------------~~--g~-- 222 (574)
T PRK01862 197 IAMESFGPLVVA-------------------SVVANIVM---------RE----------------------FA--GY-- 222 (574)
T ss_pred ccHHHHHHHHHH-------------------HHHHHHHH---------HH----------------------Hc--CC--
Confidence 334455566655 67777666 20 00 00
Q ss_pred CCCcccccccceeeccccccccCCCCCcccccchhhhhhhccCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9748 365 QPKPLQQHQQHFHYDILNNYEDVNKPPGVLLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYAC 444 (1359)
Q Consensus 365 ~~~~~~~~~~~f~v~~~~~~~~~~~~~~~~~~W~~w~~~~~~~~~~~~~~~~e~i~fil~gv~~~gl~g~l~~~~~~~~~ 444 (1359)
...|+++ .+ + .| ...+++.|+++|+ ++|+.+.+|.....+.
T Consensus 223 --------~~~~~~~------~~--~-----~~----------------~~~~~~~~~~lGv-~~G~~~~~f~~~~~~~- 263 (574)
T PRK01862 223 --------QPPYEMP------VF--P-----AV----------------TGWEVLLFVALGV-LCGAAAPQFLRLLDAS- 263 (574)
T ss_pred --------CceeeCC------Cc--C-----cC----------------CHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-
Confidence 1122220 01 0 13 4457889999999 8888888888765444
Q ss_pred ccCCCccccCCCCCCCCCccccccccccchhhhhhhhhhccCCCCCCccccCCCCCCCcccccccchhhhhhhcCCCccc
Q psy9748 445 GSGIPEALTHPHSLHSDPLSVLTQDSMTVQDVETNYRERERGGQKYPWALFPAGYSGPKFRCLGLDREKAEKEMGNGRTL 524 (1359)
Q Consensus 445 g~Gi~eik~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 524 (1359)
...+|+... .|+. |
T Consensus 264 --------------------------------~~~~~~~~~----~~~~-----------~------------------- 277 (574)
T PRK01862 264 --------------------------------KNQFKRLPV----PLPV-----------R------------------- 277 (574)
T ss_pred --------------------------------HHHHhccCC----chhH-----------H-------------------
Confidence 111222110 0100 0
Q ss_pred ccccccceeEEEeecccccchhhhhhhcccCCCcccCCCCCcccccccccchhhhhhhhhccccchhhhcccchhhHHhh
Q psy9748 525 SLSEDEGIIDITTSGTMNERHLAEQINISHGSGFLDSDEIPGIGQYEDFHTIDWQRDLARDRMRHRYIVKRKQNSIIDLI 604 (1359)
Q Consensus 525 ~~~~~e~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (1359)
..+.+++++ ++.+ ..|.... ...+.++.
T Consensus 278 --------~~~~gl~~g-------------------------~l~~-----------------~~p~~~g-~G~~~i~~- 305 (574)
T PRK01862 278 --------LALGGLLVG-------------------------VISV-----------------WVPEVWG-NGYSVVNT- 305 (574)
T ss_pred --------HHHHHHHHH-------------------------HHHH-----------------HHHHHhc-CCHHHHHH-
Confidence 001111111 1111 0001000 00111111
Q ss_pred hccccccchhhhhhhccccccccccccCCCccccccccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy9748 605 KGAHDAWSGWLCVLLVGLVTDKFIGCCNFFECFAFSDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLTVFT 684 (1359)
Q Consensus 605 ~~~~~~~~~~~~~~~~~L~~~~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~K~~lt~~T 684 (1359)
++.+ . ..+..++.+++.|+++|++|
T Consensus 306 -----------------~~~~-----------------------------------~---~~~~~l~~~~~~K~~~t~~t 330 (574)
T PRK01862 306 -----------------ILHA-----------------------------------P---WTWQALVAVLVAKLIATAAT 330 (574)
T ss_pred -----------------HHcC-----------------------------------C---chHHHHHHHHHHHHHHHHHH
Confidence 0000 0 12345667788999999999
Q ss_pred cCCcccceeehHHHHHHHHHhHHHHHHhHHhhhhhhhhhhhccCCccccCHHHHHHHHhhccccceechhHHHHHHHHHh
Q psy9748 685 FGIKVPCGRLYLALFEQNKQGTYLSFYFIYFSVSLVVIMFELTGGVRYIVPLMAAAMASKWHKKLKTLFRLSLVVIMFEL 764 (1359)
Q Consensus 685 ~G~g~pgGif~PSL~iGA~~Gr~~g~~~~~~~~~~~~~~~~c~~~~~~i~pg~yAaaa~~a~l~gvtr~pls~vvi~~El 764 (1359)
+|+|.|||+|.|++++||++|+++|..++.++| .....|+.||.+||+|+++|++|+|+|++++++|+
T Consensus 331 ~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~~------------~~~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~El 398 (574)
T PRK01862 331 AGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWP------------GHTSAPFAYAMVGMGAFLAGATQAPLMAILMIFEM 398 (574)
T ss_pred HccCCCccchhhHHHHHHHHHHHHHHHHHHhCC------------CcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 999999999999999999999999998876532 12346888998888888999999999999999999
Q ss_pred cCCcchHHHHhHHHHHHHHHHhhccCCCcchhhhhccCCCCCcchhhhcccccccccccccCCCCeEEEeCCCCCHHHHH
Q psy9748 765 TGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFLDSKEEFASTALASDVMQPKHSDPLSVLTQDSMTVQDVE 844 (1359)
Q Consensus 765 TG~~~~ilP~miav~is~~v~~~~~~~sIYd~~I~lng~PfLd~k~e~l~~~~V~DVMt~~~~~pLvviv~~~~TV~el~ 844 (1359)
||++++++|+|+++++|+++++.+++++|||.+++.++.+ .+.+.+..++++|+|+++ ...++++++++|+.
T Consensus 399 t~~~~~~~P~~ia~~~a~~v~~~~~~~~iy~~~~~~~~~~---~~~~~L~~~~V~dim~~~-----~~~v~~~~tl~ea~ 470 (574)
T PRK01862 399 TLSYQVVLPLMVSCVVAYFTARALGTTSMYEITLRRHQDE---AERERLRTTQMRELIQPA-----QTVVPPTASVADMT 470 (574)
T ss_pred hCCHhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhcccc---chhhHHhhCcHHHHhcCC-----CceeCCCCCHHHHH
Confidence 9999999999999999999999999999999999988643 345678889999999986 24578999999999
Q ss_pred HHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCCcccccccccccCC
Q psy9748 845 TLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAP 924 (1359)
Q Consensus 845 ~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sP 924 (1359)
+.+.+++++.+||+| ++++++|+|+++|+.+.+.+.++ .+..+++++|++++
T Consensus 471 ~~l~~~~~~~~~VvD--~~g~lvGiVt~~dL~~~l~~~~~--------------------------~~~~~v~dim~~~~ 522 (574)
T PRK01862 471 RVFLEYPVKYLYVVD--DDGRFRGAVALKDITSDLLDKRD--------------------------TTDKTAADYAHTPF 522 (574)
T ss_pred HHHHhCCCceEEEEc--CCCeEEEEEEHHHHHHHhhcccc--------------------------cccchHHHhccCCC
Confidence 999999999999998 57899999999999876532110 11246788999999
Q ss_pred eEecCCCCHHHHHHHhhc---ceeEEEcCC--CcEEEEEeHHHHHHHHhh
Q psy9748 925 ITITDQTPMETVCGHTFT---KQLLFPANA--KRTLEGLRGDSIVRFVQN 969 (1359)
Q Consensus 925 iTV~~~tpLeeVle~mFr---R~LpVVdeg--GrLvGIITrkDILr~l~~ 969 (1359)
.+++++++++++++.|.+ +++||+|++ ++++|+||++|+++++.+
T Consensus 523 ~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 523 PLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred eeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 999999999999994444 579999865 589999999999998865
No 5
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=1.7e-59 Score=564.16 Aligned_cols=414 Identities=49% Similarity=0.793 Sum_probs=318.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCChHHHHHHHhccccccccCchhhhHHHHHHHHHhhcCCCCCCcchHHHHHHH
Q psy9748 115 VFFIAWALLFASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVHIASC 194 (1359)
Q Consensus 115 ~~~~~~~~~~~~~a~~l~~~~~p~a~GsGIpeik~~l~g~~~~~~l~~~tl~~K~i~~~lav~sGls~GkEGP~vhiga~ 194 (1359)
+.|+++++.++.++++++++++|.++||||||||++++|...++++++|+++.|++++++++++|+|+|||||+||+|++
T Consensus 29 ~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ 108 (445)
T cd03684 29 IIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFIIRGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATC 108 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCccccccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHH
Confidence 35667788889999999999999999999999999999987889999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCChhhHHHHHHhhHhhhhhhhcCCCccceeeeeeecccccceeehhhhhhhhhhccccccccccccc
Q psy9748 195 IGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFFLFFRIFHLEMEGRRRRGRPRLRWVDMIH 274 (1359)
Q Consensus 195 ig~~l~~~~~~~~~~~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l~~~~~~~~~~~~~~~~~~~Ar~~~r~~~G~~ 274 (1359)
+|+.++|+|++++.++++||++++||+|||+|++|+||+||++|++||+
T Consensus 109 ia~~l~~~~~~~~~~~~~~r~li~~GaaAGlaAaF~APi~G~lFalE~l------------------------------- 157 (445)
T cd03684 109 VGNIISRLFPKYRRNEAKRREILSAAAAAGVAVAFGAPIGGVLFSLEEV------------------------------- 157 (445)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhhhHHhcCCccchhhhhhHhh-------------------------------
Confidence 9999999998778899999999999999999999999999999999995
Q ss_pred cccccccccccccccccccccccccccccccchhhhhHhhhhhhHhhhhhccccccccccccCCcccccccccccCCCCC
Q psy9748 275 NDIEKEVSYYFPLKTLWRSFPFSIYIRSIPTKWMCDKFELAGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNE 354 (1359)
Q Consensus 275 ~~f~~~~s~~~~~~~~w~~f~~~i~~~~~~~~w~~~~~~~~~~iA~~i~i~~~wl~dlk~G~c~~~~~~~~~~cc~~~~~ 354 (1359)
..++..+.+|+++++ +++|+++. +
T Consensus 158 -------~~~~~~~~l~~~~~a-------------------s~~a~~v~---------~--------------------- 181 (445)
T cd03684 158 -------SYYFPLKTLWRSFFC-------------------ALVAAFTL---------K--------------------- 181 (445)
T ss_pred -------hhhccHHHHHHHHHH-------------------HHHHHHHH---------H---------------------
Confidence 345667788888888 77787666 2
Q ss_pred CcccCCCCCCCCCcccccccceeeccccccccCCCCCcccccchhhhhhhccCccccccchhHHHHHHHHHHHHHHHHHH
Q psy9748 355 TSFEDTGNCSQPKPLQQHQQHFHYDILNNYEDVNKPPGVLLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAG 434 (1359)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~~~~~W~~w~~~~~~~~~~~~~~~~e~i~fil~gv~~~gl~g~ 434 (1359)
.++.++.. ....|++ +++. .| +..|++.|+++|+ ++|+.|.
T Consensus 182 -~~~~~~~~--------~~~~f~~-------~~~~------~~----------------~~~~l~~~i~lGi-~~Gl~g~ 222 (445)
T cd03684 182 -SLNPFGTG--------RLVLFEV-------EYDR------DW----------------HYFELIPFILLGI-FGGLYGA 222 (445)
T ss_pred -HhcccCCC--------CceEEec-------cCCC------Cc----------------cHHHHHHHHHHHH-HHHHHHH
Confidence 11112222 1223333 1211 24 5568899999999 8999999
Q ss_pred HHHHhhhhhcccCCCccccCCCCCCCCCccccccccccchhhhhhhhhhccCCCCCCccccCCCCCCCcccccccchhhh
Q psy9748 435 LVRMFAPYACGSGIPEALTHPHSLHSDPLSVLTQDSMTVQDVETNYRERERGGQKYPWALFPAGYSGPKFRCLGLDREKA 514 (1359)
Q Consensus 435 l~~~~~~~~~g~Gi~eik~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 514 (1359)
+|.+...+. .++|++... +++|+.
T Consensus 223 lf~~~~~~~----------------------------------~~~~~~~~~-~~~~~~--------------------- 246 (445)
T cd03684 223 FFIKANIKW----------------------------------ARFRKKSLL-KRYPVL--------------------- 246 (445)
T ss_pred HHHHHHHHH----------------------------------HHHHHHhcc-chhHHH---------------------
Confidence 998877655 444443321 112221
Q ss_pred hhhcCCCcccccccccceeEEEeecccccchhhhhhhcccCCCcccCCCCCcccccccccchhhhhhhhhccccchhhhc
Q psy9748 515 EKEMGNGRTLSLSEDEGIIDITTSGTMNERHLAEQINISHGSGFLDSDEIPGIGQYEDFHTIDWQRDLARDRMRHRYIVK 594 (1359)
Q Consensus 515 ~~~~~n~~~~~~~~~e~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (1359)
+ +.+.+++++ ++.| +.||...
T Consensus 247 ---------------~--~~l~~l~~~-------------------------~l~~-----------------~~p~~~~ 267 (445)
T cd03684 247 ---------------E--VLLVALITA-------------------------LISF-----------------PNPYTRL 267 (445)
T ss_pred ---------------H--HHHHHHHHH-------------------------HHHh-----------------ChHHHcc
Confidence 2 233333333 3344 3344433
Q ss_pred ccchhhHHhhhccccccchhhhhhhccccccccccccCCCccccccccccccCCCCCCCCCCCCCCCchhHHHHHHHHHH
Q psy9748 595 RKQNSIIDLIKGAHDAWSGWLCVLLVGLVTDKFIGCCNFFECFAFSDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITL 674 (1359)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 674 (1359)
+.+++++. ++.+ |.+.+....|++..+ ..+...+..+..|++++
T Consensus 268 -~g~~~i~~------------------l~~~-----~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~~~~ 311 (445)
T cd03684 268 -DMTELLEL------------------LFNE-----CEPGDDNSLCCYRDP------------PAGDGVYKALWSLLLAL 311 (445)
T ss_pred -chhhHHHH------------------HHhc-----CCCcccccccccccc------------cCCccchhHHHHHHHHH
Confidence 34445444 5555 544333333332110 00112233456678888
Q ss_pred HHHHHHHHhhcCCcccceeehHHHHHHHHHhHHHHHHhHHhh---hhhhhhhhhccCCccccCHHHHHHHHhhcccccee
Q psy9748 675 VLKLVLTVFTFGIKVPCGRLYLALFEQNKQGTYLSFYFIYFS---VSLVVIMFELTGGVRYIVPLMAAAMASKWHKKLKT 751 (1359)
Q Consensus 675 v~K~~lt~~T~G~g~pgGif~PSL~iGA~~Gr~~g~~~~~~~---~~~~~~~~~c~~~~~~i~pg~yAaaa~~a~l~gvt 751 (1359)
++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.+. |.. ..+..|+++...++|+.||+.||+|++++++
T Consensus 312 l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~ 390 (445)
T cd03684 312 IIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLAYSYPDS-IFFACCTAGPSCITPGLYAMVGAAAFLGGVT 390 (445)
T ss_pred HHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHHHhhCCcc-cccccccCCCCccCchHHHHHHHHHHhcchh
Confidence 999999999999999999999999999999999999887652 221 1233355555568999999888889999999
Q ss_pred chhHHHHHHHHHhcCCcchHHHHhHHHHHHHHHHhhccCCCcchhhhhccCCCCC
Q psy9748 752 LFRLSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFL 806 (1359)
Q Consensus 752 r~pls~vvi~~ElTG~~~~ilP~miav~is~~v~~~~~~~sIYd~~I~lng~PfL 806 (1359)
|+|+|+++|++|+||++++++|+|+++++|+++++.+++++|||.+++.||+|||
T Consensus 391 raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~~vs~~~~~~siY~~~l~~~g~p~l 445 (445)
T cd03684 391 RMTVSLVVIMFELTGALNYILPLMIAVMVSKWVADAIGKEGIYDAHIHLNGYPFL 445 (445)
T ss_pred ccchhhhheeeeccCCcccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999996
No 6
>KOG0475|consensus
Probab=100.00 E-value=8.5e-56 Score=518.76 Aligned_cols=232 Identities=34% Similarity=0.444 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHHhhccCCCcccceeccccccccccCCccceEEeeecccccccccccccccccchhhcccchHhHHHHH
Q psy9748 1025 LMRFLWDRWETLGNKLGIPDCMKDVHKAHRVNTLAKNKIKPIVVRLSNTSVRDKWTTASRSKQLYKEKIYINEHLTKANQ 1104 (1359)
Q Consensus 1025 l~gli~eLl~~Ig~~~ni~~~~~~I~k~~Ri~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~iyiNe~Lt~~~~ 1104 (1359)
+.|+...+++....+.|+.|| +.||..+ .+++|..+++..+..|++.+ |+||+++.+..
T Consensus 314 ~LGifgGl~G~~~ir~n~~~~--~~rK~~~---lg~~pv~ev~~vt~iTaiIs----------------~~np~~r~~~~ 372 (696)
T KOG0475|consen 314 LLGIFGGLWGAFFIRLNIRFC--RFRKSSK---LGKFPVLEVVFVTLVTAIIS----------------LFNPETRFNMS 372 (696)
T ss_pred HHHHhhhHHHHHHHHHHHHHH--hccchhh---ccCCcchhHHHHHHHHHHHH----------------hcCHHHHhhHH
Confidence 567888889999999999999 6778775 88999999999999999999 99999999999
Q ss_pred HHHHHHHHhhhhcCccceeecccchhhhcccccceeeeccccccccccccCcchhhhhhhhhHhhhhhheeeeeeeeecc
Q psy9748 1105 DLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYVIRNVRDLETYMTLVPPQLSRSLQEVSVFLDFAGYTHVDVLVSH 1184 (1359)
Q Consensus 1105 ~L~~~a~~~~k~~~~k~~w~~~~~i~~rk~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1184 (1359)
+++.++ ++.|+.....+ |.++ .++.+.|++..++.+++..
T Consensus 373 e~i~~L-------------f~~C~~~~s~~-------------l~~~------~~~~~~~~L~~a~i~k~~~-------- 412 (696)
T KOG0475|consen 373 ELITIL-------------FNKCSPSSSTS-------------LPET------TVYSAAILLLLALILKIAL-------- 412 (696)
T ss_pred HHHHHH-------------HhhcCCccccc-------------Cccc------chHHHHHHHHHHHHHHHHH--------
Confidence 999999 78877554333 2222 2899999999999999988
Q ss_pred cCCCCCCcccccCCCcceEEEeecccccccccccccchhhhhhcceeeee-------eeccCCCCccccccccccCCccC
Q psy9748 1185 TDNHTSNDARVNFGGQQDIFTFLGKQFEGGLQLTFKHILSLSSHGMIVVC-------FYLNSPPSVSSLVWPKVSLSNLT 1257 (1359)
Q Consensus 1185 ~~~~~~~~~~~~~~~~~~~~t~~~~~p~g~f~~~~~~ips~~~g~~~g~~-------~~~~~p~~~~~~~~~~~~~~~i~ 1257 (1359)
|++|||+|||+|+| ||||++|+..|+. ++.+ |+... -+.+|+.
T Consensus 413 -----------------t~ftfGakvP~Gif------vPSmaiGA~aGr~vG~~~e~l~~~-~~~~~------fg~~ci~ 462 (696)
T KOG0475|consen 413 -----------------TIFTFGAKVPAGIF------VPSLAIGAIAGRAVGIIVEQLAQN-PDFNL------FGLSCAT 462 (696)
T ss_pred -----------------HHhhhhccCcccee------cchHHHHHHHHHHHHHHHHHHhcC-CCccc------cchhhcC
Confidence 99999999999999 9999996666655 4555 66533 3788999
Q ss_pred ccceeeecccccccchhhhhhhhccccchhheehhhhhcCCcchHHHHHHHHHHHHHHHhhcCCCChhhHHHhhcCCCCC
Q psy9748 1258 AMQTRMVVCTSNDLTLLLTFLTLFGTRDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFL 1337 (1359)
Q Consensus 1258 pg~ya~vg~a~~~~~~~~a~~~g~t~~tiS~~vI~fElTg~~~~ilPlMia~~ia~~v~~~~~~~siYd~~i~~k~~P~l 1337 (1359)
||.||||||| |.+||+||||+|++||||||||+++|++|+|+|+++||||+|.++|.+|||.+|++||+||+
T Consensus 463 Pg~Ya~vGaA--------A~LsGvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~l 534 (696)
T KOG0475|consen 463 PGAYALVGAA--------ATLSGVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPFL 534 (696)
T ss_pred chHHHHHHHH--------HHhcCcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCCc
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhcccccccccccCC
Q psy9748 1338 DSKEEFASTALASDVMQPK 1356 (1359)
Q Consensus 1338 ~~~~~~~~~~~v~diM~~~ 1356 (1359)
+.+++.. +....|+|++.
T Consensus 535 ~~k~e~~-~t~~~~v~~p~ 552 (696)
T KOG0475|consen 535 DSKSEFS-STLAIPVMEPC 552 (696)
T ss_pred ccccccc-cchhhhhhchh
Confidence 9886655 66677887763
No 7
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=5.4e-53 Score=504.45 Aligned_cols=371 Identities=30% Similarity=0.457 Sum_probs=281.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCChHHHHHHHhccccccccCchhhhHHHHHHHHHhhcCCCCCCcchHHH
Q psy9748 111 TLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVH 190 (1359)
Q Consensus 111 ~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGIpeik~~l~g~~~~~~l~~~tl~~K~i~~~lav~sGls~GkEGP~vh 190 (1359)
..+|+.|+++++++++++++++++++|+++||||||||++++|.+.++++++|+++.|++++++++++|+|+|||||+||
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~ 113 (416)
T cd01036 34 LLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVHLPMYLSIRTLIAKTISCICAVASGLPLGKEGPLVH 113 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHH
Confidence 34556788899999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccC----------CCChhhHHHHHHhhHhhhhhhhcCCCccceeeeeeecccccceeehhhhhhhhh
Q psy9748 191 IASCIGNILSYLFPKY----------GRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFFLFFRIFHLEMEGRR 260 (1359)
Q Consensus 191 iga~ig~~l~~~~~~~----------~~~~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l~~~~~~~~~~~~~~~~~ 260 (1359)
+|+++|+.++++++.. .+++++||++++||+|||+|++|+||+||++|++||+
T Consensus 114 iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF~APiaGvlFalE~~----------------- 176 (416)
T cd01036 114 LGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVASAFGAPIGGLLFVLEEV----------------- 176 (416)
T ss_pred HHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcchhhccCCcceeeeeeeHHh-----------------
Confidence 9999999999987532 2678999999999999999999999999999999994
Q ss_pred hccccccccccccccccccccccccccccccccccccccccccccchhhhhHhhhhhhHhhhhhccccccccccccCCcc
Q psy9748 261 RRGRPRLRWVDMIHNDIEKEVSYYFPLKTLWRSFPFSIYIRSIPTKWMCDKFELAGSVAGIIDIGSSWMSDLKYGLCPEA 340 (1359)
Q Consensus 261 ~~Ar~~~r~~~G~~~~f~~~~s~~~~~~~~w~~f~~~i~~~~~~~~w~~~~~~~~~~iA~~i~i~~~wl~dlk~G~c~~~ 340 (1359)
+.+++.+.+|+++++ +++|+++. +++.... +
T Consensus 177 ---------------------~~~~~~~~~~~~~~a-------------------s~~a~~v~---~~~~~~~----~-- 207 (416)
T cd01036 177 ---------------------STFFPVRLAWRVFFA-------------------ALVSAFVI---QIYNSFN----S-- 207 (416)
T ss_pred ---------------------hccccHHHHHHHHHH-------------------HHHHHHHH---HHhcccc----C--
Confidence 445677888999988 77777765 1221110 0
Q ss_pred cccccccccCCCCCCcccCCCCCCCCCcccccccceeeccccccccCCCCCcccccchhhhhhhccCccccccchhHHHH
Q psy9748 341 FWLNKEQCCWSSNETSFEDTGNCSQPKPLQQHQQHFHYDILNNYEDVNKPPGVLLQWLTWAEVMGSNKEGFMAYTLEYVF 420 (1359)
Q Consensus 341 ~~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~~~~~W~~w~~~~~~~~~~~~~~~~e~i~ 420 (1359)
+... .+.+...|.+. + +++.+ ..| +..++++
T Consensus 208 -------------------~~~~-----~~~~~~~~~~~----~-~~~~~----~~~----------------~~~~l~~ 238 (416)
T cd01036 208 -------------------GFEL-----LDRSSAMFLSL----T-VFELH----VPL----------------NLYEFIP 238 (416)
T ss_pred -------------------Cccc-----cccccccceec----c-ccCCC----CCC----------------CHHHHHH
Confidence 0000 00000001000 0 00000 013 4568999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCCCccccCCCCCCCCCccccccccccchhhhhhhhhhccC--CCCCCccccCCC
Q psy9748 421 FIAWALLFASLAAGLVRMFAPYACGSGIPEALTHPHSLHSDPLSVLTQDSMTVQDVETNYRERERG--GQKYPWALFPAG 498 (1359)
Q Consensus 421 fil~gv~~~gl~g~l~~~~~~~~~g~Gi~eik~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~p~~~~~~~ 498 (1359)
|+++|+ ++|+.|.+|.+...+. .++|++... .+++|
T Consensus 239 ~illGv-~~G~~g~~f~~~~~~~----------------------------------~~~~~~~~~~~~~~~~------- 276 (416)
T cd01036 239 TVVIGV-ICGLLAALFVRLSIIF----------------------------------LRWRRRLLFRKTARYR------- 276 (416)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHH----------------------------------HHHHHHHhhccccchh-------
Confidence 999999 9999999998877666 344433211 00000
Q ss_pred CCCCcccccccchhhhhhhcCCCcccccccccceeEEEeecccccchhhhhhhcccCCCcccCCCCCcccccccccchhh
Q psy9748 499 YSGPKFRCLGLDREKAEKEMGNGRTLSLSEDEGIIDITTSGTMNERHLAEQINISHGSGFLDSDEIPGIGQYEDFHTIDW 578 (1359)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~e~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (1359)
..+
T Consensus 277 -----------------------------~~~------------------------------------------------ 279 (416)
T cd01036 277 -----------------------------VLE------------------------------------------------ 279 (416)
T ss_pred -----------------------------HHH------------------------------------------------
Confidence 000
Q ss_pred hhhhhhccccchhhhcccchhhHHhhhccccccchhhhhhhccccccccccccCCCccccccccccccCCCCCCCCCCCC
Q psy9748 579 QRDLARDRMRHRYIVKRKQNSIIDLIKGAHDAWSGWLCVLLVGLVTDKFIGCCNFFECFAFSDYVINHNATSTSNPTTSE 658 (1359)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~ 658 (1359)
++..++...
T Consensus 280 --------------------------------------~~~~~~i~~--------------------------------- 288 (416)
T cd01036 280 --------------------------------------PVLFTLIYS--------------------------------- 288 (416)
T ss_pred --------------------------------------HHHHHHHHH---------------------------------
Confidence 000011111
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCcccceeehHHHHHHHHHhHHHHHHhHHhhhhhhhhhhhccCCccccCHHHH
Q psy9748 659 AGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGRLYLALFEQNKQGTYLSFYFIYFSVSLVVIMFELTGGVRYIVPLMA 738 (1359)
Q Consensus 659 ~~~~~~~~~~~L~~~~v~K~~lt~~T~G~g~pgGif~PSL~iGA~~Gr~~g~~~~~~~~~~~~~~~~c~~~~~~i~pg~y 738 (1359)
....+..|+++++.|+++|++|+|+|+|||+|+|||++||++|+++|.+.+.++|.. ..|.....+++|+.|
T Consensus 289 ----~~~~~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~ 360 (416)
T cd01036 289 ----TIHYAPTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAG----IGAESATLWADPGVY 360 (416)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHcccc----ccccccCCccChHHH
Confidence 000134577788999999999999999999999999999999999999887764311 012222346899999
Q ss_pred HHHHhhccccceechhHHHHHHHHHhcCCcchHHHHhHHHHHHHHHHhhccCCCcch
Q psy9748 739 AAMASKWHKKLKTLFRLSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYD 795 (1359)
Q Consensus 739 Aaaa~~a~l~gvtr~pls~vvi~~ElTG~~~~ilP~miav~is~~v~~~~~~~sIYd 795 (1359)
|.+||+|+++|++|+|+|+++|++|+||++++++|+|+++++|+++++.++ ++|||
T Consensus 361 alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~-~siY~ 416 (416)
T cd01036 361 ALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFC-ESLYH 416 (416)
T ss_pred HHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHHhhC-CCCCC
Confidence 988888889999999999999999999999999999999999999999999 89997
No 8
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=3.6e-52 Score=503.14 Aligned_cols=375 Identities=35% Similarity=0.515 Sum_probs=283.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCChHHHHHHHhccccccccCchhhhHHHHHHHHHhhcCCCCCCcchHHHHHH
Q psy9748 114 YVFFIAWALLFASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVHIAS 193 (1359)
Q Consensus 114 ~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGIpeik~~l~g~~~~~~l~~~tl~~K~i~~~lav~sGls~GkEGP~vhiga 193 (1359)
++.|+.+++.++.++++++++++|+++||||||||++++|...++.+++|+++.|++++++++++|+|+|||||+||+|+
T Consensus 78 ~~~~~~~~~~~~li~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa 157 (466)
T cd03685 78 FLVYLGLNLVLVLVAALLVAYIAPTAAGSGIPEVKGYLNGVKIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGA 157 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCcCccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHH
Confidence 44566778888999999999999999999999999999998778889999999999999999999999999999999999
Q ss_pred HHHHHHhhhcc----------cCCCChhhHHHHHHhhHhhhhhhhcCCCccceeeeeeecccccceeehhhhhhhhhhcc
Q psy9748 194 CIGNILSYLFP----------KYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFFLFFRIFHLEMEGRRRRG 263 (1359)
Q Consensus 194 ~ig~~l~~~~~----------~~~~~~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l~~~~~~~~~~~~~~~~~~~A 263 (1359)
++|+.++|.++ ++.+++++||++++||+|||+|++|+||+||++|++||+
T Consensus 158 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l-------------------- 217 (466)
T cd03685 158 CIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEV-------------------- 217 (466)
T ss_pred HHHHHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehh--------------------
Confidence 99999997431 223588899999999999999999999999999999995
Q ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhhhHhhhhhhHhhhhhccccccccccccCCccccc
Q psy9748 264 RPRLRWVDMIHNDIEKEVSYYFPLKTLWRSFPFSIYIRSIPTKWMCDKFELAGSVAGIIDIGSSWMSDLKYGLCPEAFWL 343 (1359)
Q Consensus 264 r~~~r~~~G~~~~f~~~~s~~~~~~~~w~~f~~~i~~~~~~~~w~~~~~~~~~~iA~~i~i~~~wl~dlk~G~c~~~~~~ 343 (1359)
+.+++.+.+|+++++ +++|+++.... ....+.+.+
T Consensus 218 ------------------~~~~~~~~~~~~l~~-------------------s~ias~va~~~--~~~~~~~~~------ 252 (466)
T cd03685 218 ------------------ASFWNQALTWRTFFS-------------------SMIVTFTLNFF--LSGCNSGKC------ 252 (466)
T ss_pred ------------------hhhcchhHHHHHHHH-------------------HHHHHHHHHHH--HHHcCCCCc------
Confidence 334555667777777 55555444110 000010000
Q ss_pred ccccccCCCCCCcccCCCCCCCCCcccccccceeeccccccccCCCCCcccccchhhhhhhccCccccccchhHHHHHHH
Q psy9748 344 NKEQCCWSSNETSFEDTGNCSQPKPLQQHQQHFHYDILNNYEDVNKPPGVLLQWLTWAEVMGSNKEGFMAYTLEYVFFIA 423 (1359)
Q Consensus 344 ~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~~~~~W~~w~~~~~~~~~~~~~~~~e~i~fil 423 (1359)
..|+++ ....|++. ... ..| +..|++.|++
T Consensus 253 --------------~~~~~~--------~~~~~~~~-------~~~-----~~~----------------~~~~l~~~il 282 (466)
T cd03685 253 --------------GLFGPG--------GLIMFDGS-------STK-----YLY----------------TYFELIPFML 282 (466)
T ss_pred --------------cccCCc--------cceecccc-------cCC-----CCc----------------cHHHHHHHHH
Confidence 011111 11222220 000 013 5678999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCCCccccCCCCCCCCCccccccccccchhhhhhhhhhccCCCCCCccccCCCCCCCc
Q psy9748 424 WALLFASLAAGLVRMFAPYACGSGIPEALTHPHSLHSDPLSVLTQDSMTVQDVETNYRERERGGQKYPWALFPAGYSGPK 503 (1359)
Q Consensus 424 ~gv~~~gl~g~l~~~~~~~~~g~Gi~eik~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~~~ 503 (1359)
+|+ ++|+.|.+|.....+. .++|++... ..++.
T Consensus 283 lGi-~~Gl~g~~f~~~~~~~----------------------------------~~~~~~~~~--~~~~~---------- 315 (466)
T cd03685 283 IGV-IGGLLGALFNHLNHKV----------------------------------TRFRKRINH--KGKLL---------- 315 (466)
T ss_pred HHH-HHHHHHHHHHHHHHHH----------------------------------HHHHHHhcc--ccchh----------
Confidence 999 9999999998877666 344443211 00000
Q ss_pred ccccccchhhhhhhcCCCcccccccccceeEEEeecccccchhhhhhhcccCCCcccCCCCCcccccccccchhhhhhhh
Q psy9748 504 FRCLGLDREKAEKEMGNGRTLSLSEDEGIIDITTSGTMNERHLAEQINISHGSGFLDSDEIPGIGQYEDFHTIDWQRDLA 583 (1359)
Q Consensus 504 ~~~~~~~~~~~~~~~~n~~~~~~~~~e~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (1359)
++++
T Consensus 316 -----------------------~~l~----------------------------------------------------- 319 (466)
T cd03685 316 -----------------------KVLE----------------------------------------------------- 319 (466)
T ss_pred -----------------------HHHH-----------------------------------------------------
Confidence 0001
Q ss_pred hccccchhhhcccchhhHHhhhccccccchhhhhhhccccccccccccCCCccccccccccccCCCCCCCCCCCCCCCch
Q psy9748 584 RDRMRHRYIVKRKQNSIIDLIKGAHDAWSGWLCVLLVGLVTDKFIGCCNFFECFAFSDYVINHNATSTSNPTTSEAGPGV 663 (1359)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1359)
.++.++...- +
T Consensus 320 ---------------------------------~~lv~~~~~~----~-------------------------------- 330 (466)
T cd03685 320 ---------------------------------ALLVSLVTSV----V-------------------------------- 330 (466)
T ss_pred ---------------------------------HHHHHHHHHH----H--------------------------------
Confidence 0000011110 0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCcccceeehHHHHHHHHHhHHHHHHhHHhhhhhhhhhhhccCCccccCHHHHHHHHh
Q psy9748 664 YTAVWLLMITLVLKLVLTVFTFGIKVPCGRLYLALFEQNKQGTYLSFYFIYFSVSLVVIMFELTGGVRYIVPLMAAAMAS 743 (1359)
Q Consensus 664 ~~~~~~L~~~~v~K~~lt~~T~G~g~pgGif~PSL~iGA~~Gr~~g~~~~~~~~~~~~~~~~c~~~~~~i~pg~yAaaa~ 743 (1359)
.....|++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.+++ ..+++|+.||+.||
T Consensus 331 -~~~~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~------------~~~~~~~~~aliGm 397 (466)
T cd03685 331 -AFPQTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFG------------FTSIDPGLYALLGA 397 (466)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHcc------------ccCCCchHHHHHHH
Confidence 00124566668899999999999999999999999999999999998876532 24578999999899
Q ss_pred hccccceechhHHHHHHHHHhcCCcchHHHHhHHHHHHHHHHhhccCCCcchhhhhccCCCCCcch
Q psy9748 744 KWHKKLKTLFRLSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFLDSK 809 (1359)
Q Consensus 744 ~a~l~gvtr~pls~vvi~~ElTG~~~~ilP~miav~is~~v~~~~~~~sIYd~~I~lng~PfLd~k 809 (1359)
+|+++|++|+|+|+++|++|+||++++++|+|+++++|+++++.++ ++|||.+++.||+|||++.
T Consensus 398 aa~lag~~raPlt~iviv~ElTg~~~~l~pl~ia~~iA~~va~~~~-~siY~~~l~~~g~p~l~~~ 462 (466)
T cd03685 398 AAFLGGVMRMTVSLTVILLELTNNLTYLPPIMLVLMIAKWVGDYFN-EGIYDIIIQLKGVPFLHNG 462 (466)
T ss_pred HHHHhHHhhhhHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHhC-CCHHHHHHHhCCCccccCC
Confidence 9999999999999999999999999999999999999999999987 7999999999999999864
No 9
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=6.3e-52 Score=496.44 Aligned_cols=382 Identities=29% Similarity=0.424 Sum_probs=289.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCChHHHHHHHhccccccccCchhhhHHHHHHHHHhhcCCCCCCcchHHH
Q psy9748 111 TLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVH 190 (1359)
Q Consensus 111 ~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGIpeik~~l~g~~~~~~l~~~tl~~K~i~~~lav~sGls~GkEGP~vh 190 (1359)
+..++.|+++++.++.++++++++++|.++||||||||++++|.+.++.+++|+++.|++++++++++|+|+|||||+||
T Consensus 42 ~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~ 121 (426)
T cd03683 42 LLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMKTILRGVVLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVH 121 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHH
Confidence 34566778889999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccC---CCChhhHHHHHHhhHhhhhhhhcCCCccceeeeeeecccccceeehhhhhhhhhhcccccc
Q psy9748 191 IASCIGNILSYLFPKY---GRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFFLFFRIFHLEMEGRRRRGRPRL 267 (1359)
Q Consensus 191 iga~ig~~l~~~~~~~---~~~~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l~~~~~~~~~~~~~~~~~~~Ar~~~ 267 (1359)
+|+++|+.++|+++.. ++++++||++++||+|||+|++||||+||++|++|++
T Consensus 122 iGa~i~~~~~~~~~~~~~~~~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE~l------------------------ 177 (426)
T cd03683 122 ISSIVAALLSKLTTFFSGIYENESRRMEMLAAACAVGVACTFGAPIGGVLFSIEVT------------------------ 177 (426)
T ss_pred HHHHHHHHHHhhcccccccccCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEeehh------------------------
Confidence 9999999999987421 3578889999999999999999999999999999995
Q ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhHhhhhhhHhhhhhccccccccccccCCccccccccc
Q psy9748 268 RWVDMIHNDIEKEVSYYFPLKTLWRSFPFSIYIRSIPTKWMCDKFELAGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQ 347 (1359)
Q Consensus 268 r~~~G~~~~f~~~~s~~~~~~~~w~~f~~~i~~~~~~~~w~~~~~~~~~~iA~~i~i~~~wl~dlk~G~c~~~~~~~~~~ 347 (1359)
+.+++.+.+|+++++ +++|+++. +++...-.+.
T Consensus 178 --------------~~~~~~~~~~~~~i~-------------------s~~a~~v~---~~~~~~~~~~----------- 210 (426)
T cd03683 178 --------------STYFAVRNYWRGFFA-------------------ATCGAFTF---RLLAVFFSDQ----------- 210 (426)
T ss_pred --------------hhhccHHHHHHHHHH-------------------HHHHHHHH---HHHHhhcCCC-----------
Confidence 334566778888877 77777654 1211110000
Q ss_pred ccCCCCCCcccCCCCCCCCCcccccccceeeccccccccCCCCCcccccchhhhhhhccCccccccchhHHHHHHHHHHH
Q psy9748 348 CCWSSNETSFEDTGNCSQPKPLQQHQQHFHYDILNNYEDVNKPPGVLLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALL 427 (1359)
Q Consensus 348 cc~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~~~~~W~~w~~~~~~~~~~~~~~~~e~i~fil~gv~ 427 (1359)
.++ ...|.. ..+..+ +| ...+++.|+++|+
T Consensus 211 ----------~~~------------~~~~~~------~~~~~~-----~~----------------~~~~l~~~i~lGv- 240 (426)
T cd03683 211 ----------ETI------------TALFKT------TFFVDF-----PF----------------DVQELPIFALLGI- 240 (426)
T ss_pred ----------ccc------------cccccc------cccCCC-----CC----------------cHHHHHHHHHHHH-
Confidence 000 000100 000000 23 4568889999999
Q ss_pred HHHHHHHHHHHhhhhhcccCCCccccCCCCCCCCCccccccccccchhhhhhhhhhccCCCCCCccccCCCCCCCccccc
Q psy9748 428 FASLAAGLVRMFAPYACGSGIPEALTHPHSLHSDPLSVLTQDSMTVQDVETNYRERERGGQKYPWALFPAGYSGPKFRCL 507 (1359)
Q Consensus 428 ~~gl~g~l~~~~~~~~~g~Gi~eik~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~~~~~~~ 507 (1359)
++|+.|.+|.+.+.+. .++|++....++.+..
T Consensus 241 ~~Gl~g~lf~~~~~~~----------------------------------~~~~~~~~~~~~~~~~-------------- 272 (426)
T cd03683 241 ICGLLGALFVFLHRKI----------------------------------VRFRRKNRLFSKFLKR-------------- 272 (426)
T ss_pred HHHHHHHHHHHHHHHH----------------------------------HHHHHHhhhhhhhccc--------------
Confidence 9999999998877665 3343322110000000
Q ss_pred ccchhhhhhhcCCCcccccccccceeEEEeecccccchhhhhhhcccCCCcccCCCCCcccccccccchhhhhhhhhccc
Q psy9748 508 GLDREKAEKEMGNGRTLSLSEDEGIIDITTSGTMNERHLAEQINISHGSGFLDSDEIPGIGQYEDFHTIDWQRDLARDRM 587 (1359)
Q Consensus 508 ~~~~~~~~~~~~n~~~~~~~~~e~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (1359)
.+.++
T Consensus 273 ------------------~~~l~--------------------------------------------------------- 277 (426)
T cd03683 273 ------------------SPLLY--------------------------------------------------------- 277 (426)
T ss_pred ------------------chHHH---------------------------------------------------------
Confidence 00000
Q ss_pred cchhhhcccchhhHHhhhccccccchhhhhhhccccccccccccCCCccccccccccccCCCCCCCCCCCCCCCchhHHH
Q psy9748 588 RHRYIVKRKQNSIIDLIKGAHDAWSGWLCVLLVGLVTDKFIGCCNFFECFAFSDYVINHNATSTSNPTTSEAGPGVYTAV 667 (1359)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1359)
++..++...- + ...+
T Consensus 278 -----------------------------~~~~g~~~~~---------------l---------------------~~p~ 292 (426)
T cd03683 278 -----------------------------PAIVALLTAV---------------L---------------------TFPF 292 (426)
T ss_pred -----------------------------HHHHHHHHHH---------------H---------------------HHHH
Confidence 0000011110 0 0013
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccceeehHHHHHHHHHhHHHHHHhHHhhhhhhhhhhhccCCccccCHHHHHHHHhhccc
Q psy9748 668 WLLMITLVLKLVLTVFTFGIKVPCGRLYLALFEQNKQGTYLSFYFIYFSVSLVVIMFELTGGVRYIVPLMAAAMASKWHK 747 (1359)
Q Consensus 668 ~~L~~~~v~K~~lt~~T~G~g~pgGif~PSL~iGA~~Gr~~g~~~~~~~~~~~~~~~~c~~~~~~i~pg~yAaaa~~a~l 747 (1359)
..++++++.|+++|++|+|+|+|||+|+|||++||++|+++|.+++.++|+.+ |..+...++|+.||+.||+|++
T Consensus 293 ~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~~p~~~-----~~~~~~~~~~~~~alvGmaa~~ 367 (426)
T cd03683 293 LTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGI-----RGGISNPIGPGGYAVVGAAAFS 367 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCccc-----ccCCCCCcCchHHHHHHHHHHH
Confidence 45777889999999999999999999999999999999999998887654211 4444556889999988888889
Q ss_pred cceechhHHHHHHHHHhcCCcchHHHHhHHHHHHHHHHhhccCCCcchhhhhccCCCCCcc
Q psy9748 748 KLKTLFRLSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFLDS 808 (1359)
Q Consensus 748 ~gvtr~pls~vvi~~ElTG~~~~ilP~miav~is~~v~~~~~~~sIYd~~I~lng~PfLd~ 808 (1359)
+|++|+|.++ +|++|+||++++++|+|+++++|+++++.++ ++|||.++++|++|||++
T Consensus 368 a~~~ra~~t~-vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~~-~~iY~~~l~~~~~p~l~~ 426 (426)
T cd03683 368 GAVTHTVSVA-VIIFELTGQISHLLPVLIAVLISNAVAQFLQ-PSIYDSIIKIKKLPYLPD 426 (426)
T ss_pred HHHHhHHHHH-heeeeecCCcchHHHHHHHHHHHHHHHHhhC-CCHHHHHHHhCCCCCCCC
Confidence 9999987765 6999999999999999999999999999997 599999999999999974
No 10
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=1.2e-44 Score=431.70 Aligned_cols=366 Identities=24% Similarity=0.324 Sum_probs=273.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCChHHHHHHHhccccccccCchhhhHHHHHHHHHhhcCCCCCCcchHHHHHH
Q psy9748 114 YVFFIAWALLFASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVHIAS 193 (1359)
Q Consensus 114 ~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGIpeik~~l~g~~~~~~l~~~tl~~K~i~~~lav~sGls~GkEGP~vhiga 193 (1359)
+..+++.+..++.+++++++++.|.++|+|+||++..++|.. +.+++++++.|++++++++++|+|+|||||++|+|+
T Consensus 37 ~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~~--~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga 114 (402)
T cd01031 37 LLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGLL--PPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGA 114 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCC--CcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHH
Confidence 334556677778888888998999999999999999999843 467889999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCCChhhHHHHHHhhHhhhhhhhcCCCccceeeeeeecccccceeehhhhhhhhhhcccccccccccc
Q psy9748 194 CIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFFLFFRIFHLEMEGRRRRGRPRLRWVDMI 273 (1359)
Q Consensus 194 ~ig~~l~~~~~~~~~~~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l~~~~~~~~~~~~~~~~~~~Ar~~~r~~~G~ 273 (1359)
++|+.+++++ +.+++++|++++||+|||+|++|+||++|++|++|++..
T Consensus 115 ~ig~~~~~~~---~~~~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~---------------------------- 163 (402)
T cd01031 115 AIGQGVSKWF---KTSPEERRQLIAAGAAAGLAAAFNAPLAGVLFVLEELRH---------------------------- 163 (402)
T ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHHhHHHHhCCccHHHHHHHHHHHh----------------------------
Confidence 9999999998 567889999999999999999999999999999999532
Q ss_pred ccccccccccccccccccccccccccccccccchhhhhHhhhhhhHhhhhhccccccccccccCCcccccccccccCCCC
Q psy9748 274 HNDIEKEVSYYFPLKTLWRSFPFSIYIRSIPTKWMCDKFELAGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSN 353 (1359)
Q Consensus 274 ~~~f~~~~s~~~~~~~~w~~f~~~i~~~~~~~~w~~~~~~~~~~iA~~i~i~~~wl~dlk~G~c~~~~~~~~~~cc~~~~ 353 (1359)
.+..+.+++.+++ +++|+++. +.
T Consensus 164 ----------~~~~~~~~~~~~a-------------------~~~a~~v~---------~~------------------- 186 (402)
T cd01031 164 ----------SFSPLALLTALVA-------------------SIAADFVS---------RL------------------- 186 (402)
T ss_pred ----------hCCHHHHHHHHHH-------------------HHHHHHHH---------HH-------------------
Confidence 2334556666666 77777766 21
Q ss_pred CCcccCCCCCCCCCcccccccceeeccccccccCCCCCcccccchhhhhhhccCccccccchhHHHHHHHHHHHHHHHHH
Q psy9748 354 ETSFEDTGNCSQPKPLQQHQQHFHYDILNNYEDVNKPPGVLLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAA 433 (1359)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~~~~~W~~w~~~~~~~~~~~~~~~~e~i~fil~gv~~~gl~g 433 (1359)
+. ++. ..|.++ .+ ..| ...|++.|+++|+ ++|+.|
T Consensus 187 ---~~--~~~----------~~~~~~------~~-------~~~----------------~~~~l~~~illGv-~~G~~g 221 (402)
T cd01031 187 ---FF--GLG----------PVLSIP------PL-------PAL----------------PLKSYWLLLLLGI-IAGLLG 221 (402)
T ss_pred ---Hc--CCC----------ceEecC------CC-------CCC----------------CHHHHHHHHHHHH-HHHHHH
Confidence 00 000 112220 11 013 4568889999999 889999
Q ss_pred HHHHHhhhhhcccCCCccccCCCCCCCCCccccccccccchhhhhhhhhhccCCCCCCccccCCCCCCCcccccccchhh
Q psy9748 434 GLVRMFAPYACGSGIPEALTHPHSLHSDPLSVLTQDSMTVQDVETNYRERERGGQKYPWALFPAGYSGPKFRCLGLDREK 513 (1359)
Q Consensus 434 ~l~~~~~~~~~g~Gi~eik~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 513 (1359)
.+|.....++ .++|++... +.++.
T Consensus 222 ~~f~~~~~~~----------------------------------~~~~~~~~~--~~~~~-------------------- 245 (402)
T cd01031 222 YLFNRSLLKS----------------------------------QDLYRKLKK--LPREL-------------------- 245 (402)
T ss_pred HHHHHHHHHH----------------------------------HHHHHhccc--CChhH--------------------
Confidence 9988876655 233332111 01111
Q ss_pred hhhhcCCCcccccccccceeEEEeecccccchhhhhhhcccCCCcccCCCCCcccccccccchhhhhhhhhccccchhhh
Q psy9748 514 AEKEMGNGRTLSLSEDEGIIDITTSGTMNERHLAEQINISHGSGFLDSDEIPGIGQYEDFHTIDWQRDLARDRMRHRYIV 593 (1359)
Q Consensus 514 ~~~~~~n~~~~~~~~~e~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1359)
. ..+.+++++ ++.+ ..|+..
T Consensus 246 ----------------~--~~l~gl~~~-------------------------~~~~-----------------~~p~~~ 265 (402)
T cd01031 246 ----------------R--VLLPGLLIG-------------------------PLGL-----------------LLPEAL 265 (402)
T ss_pred ----------------H--HHHHHHHHH-------------------------HHHH-----------------HHHHHh
Confidence 0 111222222 2222 001111
Q ss_pred cccchhhHHhhhccccccchhhhhhhccccccccccccCCCccccccccccccCCCCCCCCCCCCCCCchhHHHHHHHHH
Q psy9748 594 KRKQNSIIDLIKGAHDAWSGWLCVLLVGLVTDKFIGCCNFFECFAFSDYVINHNATSTSNPTTSEAGPGVYTAVWLLMIT 673 (1359)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 673 (1359)
. .+.+.++. ++.+ . ..+..++..
T Consensus 266 g-~G~~~i~~------------------~~~~-------------------------------------~-~~~~~l~~~ 288 (402)
T cd01031 266 G-GGHGLILS------------------LAGG-------------------------------------N-FSISLLLLI 288 (402)
T ss_pred C-CHHHHHHH------------------HHcC-------------------------------------C-chHHHHHHH
Confidence 1 11122211 1111 0 123456778
Q ss_pred HHHHHHHHHhhcCCcccceeehHHHHHHHHHhHHHHHHhHHhhhhhhhhhhhccCCccccCHHHHHHHHhhccccceech
Q psy9748 674 LVLKLVLTVFTFGIKVPCGRLYLALFEQNKQGTYLSFYFIYFSVSLVVIMFELTGGVRYIVPLMAAAMASKWHKKLKTLF 753 (1359)
Q Consensus 674 ~v~K~~lt~~T~G~g~pgGif~PSL~iGA~~Gr~~g~~~~~~~~~~~~~~~~c~~~~~~i~pg~yAaaa~~a~l~gvtr~ 753 (1359)
++.|+++|++|+|+|.|||+|.|++++||++|+++|..++.++| ...++|+.||++||+|++++++|+
T Consensus 289 ~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~------------~~~~~~~~~a~~G~aa~~a~~~~a 356 (402)
T cd01031 289 FVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGP------------IPISAPATFAIAGMAAFFAAVVRA 356 (402)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcC------------cccccHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999887643 235789999988888889999999
Q ss_pred hHHHHHHHHHhcCCcchHHHHhHHHHHHHHHHhhccCCCcchhhhh
Q psy9748 754 RLSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIM 799 (1359)
Q Consensus 754 pls~vvi~~ElTG~~~~ilP~miav~is~~v~~~~~~~sIYd~~I~ 799 (1359)
|+|++++++|+||++++++|+|+++++|+++++.++++++||.+++
T Consensus 357 Plta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~siY~~~l~ 402 (402)
T cd01031 357 PITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPIYEALLE 402 (402)
T ss_pred hHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChhHHHhC
Confidence 9999999999999999999999999999999999999999998874
No 11
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=4.4e-44 Score=427.50 Aligned_cols=356 Identities=17% Similarity=0.183 Sum_probs=254.2
Q ss_pred HHHHHHHHHHHhccC--CCCCChHHHHHHHhccccccccCchhhhHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHhh
Q psy9748 124 FASLAAGLVRMFAPY--ACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVHIASCIGNILSY 201 (1359)
Q Consensus 124 ~~~~a~~l~~~~~p~--a~GsGIpeik~~l~g~~~~~~l~~~tl~~K~i~~~lav~sGls~GkEGP~vhiga~ig~~l~~ 201 (1359)
.+.++..+.+++.|+ .+++|++|++..+++ ++.++.|+.+.|.+++++++++|+|+|||||+||+|+++|+.++|
T Consensus 60 ggll~g~~~~~~~~~~~~~~~g~~~vi~av~~---~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~ 136 (418)
T PRK01610 60 GGLAAGLLLWGWQKFTQQRPHAPTDYMEALQT---DGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQ 136 (418)
T ss_pred HHHHHHHHHHHHcccccccCCCcHHHHHHHHc---CCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH
Confidence 344455566666653 778999999998886 477999999999999999999999999999999999999999999
Q ss_pred hcccCCCChhhHHHHHHhhHhhhhhhhcCCCccceeeeeeecccccceeehhhhhhhhhhcccccccccccccccccccc
Q psy9748 202 LFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFFLFFRIFHLEMEGRRRRGRPRLRWVDMIHNDIEKEV 281 (1359)
Q Consensus 202 ~~~~~~~~~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l~~~~~~~~~~~~~~~~~~~Ar~~~r~~~G~~~~f~~~~ 281 (1359)
+| + ++++||++++||+|||+|++|+||++|++|++|++..+++.+
T Consensus 137 ~~---~-~~~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~------------------------------- 181 (418)
T PRK01610 137 RF---T-PRQEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLA------------------------------- 181 (418)
T ss_pred Hh---C-ChHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHH-------------------------------
Confidence 99 4 578899999999999999999999999999999974433322
Q ss_pred ccccccccccccccccccccccccchhhhhHhhhhhhHhhhhhccccccccccccCCcccccccccccCCCCCCcccCCC
Q psy9748 282 SYYFPLKTLWRSFPFSIYIRSIPTKWMCDKFELAGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTG 361 (1359)
Q Consensus 282 s~~~~~~~~w~~f~~~i~~~~~~~~w~~~~~~~~~~iA~~i~i~~~wl~dlk~G~c~~~~~~~~~~cc~~~~~~~~~~~~ 361 (1359)
.+..++++ +++|+++. +. +. +
T Consensus 182 -------~~~p~~ia-------------------s~~a~~v~---------~~----------------------~~--g 202 (418)
T PRK01610 182 -------SLGPVVIS-------------------AVVALLTT---------NL----------------------LN--G 202 (418)
T ss_pred -------HHHHHHHH-------------------HHHHHHHH---------HH----------------------Hc--C
Confidence 23333333 56666665 20 00 0
Q ss_pred CCCCCCcccccccceeeccccccccCCCCCcccccchhhhhhhccCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9748 362 NCSQPKPLQQHQQHFHYDILNNYEDVNKPPGVLLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAP 441 (1359)
Q Consensus 362 ~~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~~~~~W~~w~~~~~~~~~~~~~~~~e~i~fil~gv~~~gl~g~l~~~~~~ 441 (1359)
. +...|+++ .+ . .| ...+++.|+++|+ ++|+.|.+|.+...
T Consensus 203 ~---------~~~~~~i~------~~-~------~~----------------~~~~l~~~i~lGi-i~Gl~g~~f~~~~~ 243 (418)
T PRK01610 203 S---------DALLYNVQ------LS-V------TV----------------QARDYALIISTGL-LAGLCGPLLLTLMN 243 (418)
T ss_pred C---------CCCeeecC------Cc-C------CC----------------CHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 0 11123331 01 0 13 4568889999999 88999888888655
Q ss_pred hhcccCCCccccCCCCCCCCCccccccccccchhhhhhhhhhccCCCCCCccccCCCCCCCcccccccchhhhhhhcCCC
Q psy9748 442 YACGSGIPEALTHPHSLHSDPLSVLTQDSMTVQDVETNYRERERGGQKYPWALFPAGYSGPKFRCLGLDREKAEKEMGNG 521 (1359)
Q Consensus 442 ~~~g~Gi~eik~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 521 (1359)
+. .+.+++... .|+.
T Consensus 244 ~~---------------------------------~~~~~~~~~----~~~~---------------------------- 258 (418)
T PRK01610 244 AS---------------------------------HRGFVSLKL----APPW---------------------------- 258 (418)
T ss_pred HH---------------------------------HHHHccccc----chhH----------------------------
Confidence 44 111211110 1110
Q ss_pred cccccccccceeEEEeecccccchhhhhhhcccCCCcccCCCCCcccccccccchhhhhhhhhccccchhhhcccchhhH
Q psy9748 522 RTLSLSEDEGIIDITTSGTMNERHLAEQINISHGSGFLDSDEIPGIGQYEDFHTIDWQRDLARDRMRHRYIVKRKQNSII 601 (1359)
Q Consensus 522 ~~~~~~~~e~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (1359)
. ..+.+++++ ++.+ ..|+... ...+.+
T Consensus 259 --------~--~~lggli~g-------------------------~l~~-----------------~~p~~~G-~G~~~i 285 (418)
T PRK01610 259 --------Q--LALGGLIVG-------------------------LLSL-----------------FTPAVWG-NGYSVV 285 (418)
T ss_pred --------H--HHHHHHHHH-------------------------HHHH-----------------HhhHHhC-CcHHHH
Confidence 0 111111221 1111 0011111 111111
Q ss_pred HhhhccccccchhhhhhhccccccccccccCCCccccccccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q psy9748 602 DLIKGAHDAWSGWLCVLLVGLVTDKFIGCCNFFECFAFSDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLT 681 (1359)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~K~~lt 681 (1359)
+. ++++ ...+..++.+++.|+++|
T Consensus 286 ~~------------------~~~~--------------------------------------~~~~~~l~~l~l~K~~~t 309 (418)
T PRK01610 286 QS------------------FLTA--------------------------------------PPLLMLIAGIFLCKLLAV 309 (418)
T ss_pred HH------------------HHcC--------------------------------------ChhHHHHHHHHHHHHHHH
Confidence 11 0000 012345666788999999
Q ss_pred HhhcCCcccceeehHHHHHHHHHhHHHHHHhHHhhhhhhhhhhhccCCccccCHHHHHHHHhhccccceechhHHHHHHH
Q psy9748 682 VFTFGIKVPCGRLYLALFEQNKQGTYLSFYFIYFSVSLVVIMFELTGGVRYIVPLMAAAMASKWHKKLKTLFRLSLVVIM 761 (1359)
Q Consensus 682 ~~T~G~g~pgGif~PSL~iGA~~Gr~~g~~~~~~~~~~~~~~~~c~~~~~~i~pg~yAaaa~~a~l~gvtr~pls~vvi~ 761 (1359)
++|+|+|.|||+|.|++++||++|.++|.+++.++| .....|..||++||+|++++++|+|+|+++++
T Consensus 310 ~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~------------~~~~~~~~~a~vGmaA~laa~~~aPltaivl~ 377 (418)
T PRK01610 310 LASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWLP------------DGEEITLLLGLTGMATLLAATTHAPIMSTLMI 377 (418)
T ss_pred HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCC------------CcccchHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 999999999999999999999999999998876532 12235789998999999999999999999999
Q ss_pred HHhcCCcchHHHHhHHHHHHHHHHhhccCCCcchhhhhcc
Q psy9748 762 FELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLN 801 (1359)
Q Consensus 762 ~ElTG~~~~ilP~miav~is~~v~~~~~~~sIYd~~I~ln 801 (1359)
+|+||++++++|+|+++++|+++++.+++++|||.++..+
T Consensus 378 ~Eltg~~~~~~p~~ia~~ia~~vs~~~~~~siy~~~~~~~ 417 (418)
T PRK01610 378 CEMTGEYQLLPGLLIACVIASVISRTLRRDSIYRQHTAEH 417 (418)
T ss_pred HHHhCCHhHHHHHHHHHHHHHHHHHHhCCCCchHHHHhcc
Confidence 9999999999999999999999999999999999998654
No 12
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-44 Score=431.88 Aligned_cols=357 Identities=25% Similarity=0.342 Sum_probs=264.3
Q ss_pred HHHHHhccCCCCCChHHHHHHHhccccccccCchhhhHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHhhhcccCCCC
Q psy9748 130 GLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVHIASCIGNILSYLFPKYGRN 209 (1359)
Q Consensus 130 ~l~~~~~p~a~GsGIpeik~~l~g~~~~~~l~~~tl~~K~i~~~lav~sGls~GkEGP~vhiga~ig~~l~~~~~~~~~~ 209 (1359)
++++++.|+++||||||+++.+++. ++.++++..++|.++++++++||+|+|||||.||+|+++|+.++|++ +.+
T Consensus 80 ~~~~~~~p~~~g~Gi~~~i~a~~~~--~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l---~~~ 154 (443)
T COG0038 80 LLVYKFAPEARGSGIPQAIEALHGR--KGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLL---KLS 154 (443)
T ss_pred HHHHHhCccccCCChhHHHHHHhcC--CCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHh---CCC
Confidence 5888999999999999999999985 57799999999999999999999999999999999999999999999 678
Q ss_pred hhhHHHHHHhhHhhhhhhhcCCCccceeeeeeecccccceeehhhhhhhhhhcccccccccccccccccccccccccccc
Q psy9748 210 EAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFFLFFRIFHLEMEGRRRRGRPRLRWVDMIHNDIEKEVSYYFPLKT 289 (1359)
Q Consensus 210 ~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l~~~~~~~~~~~~~~~~~~~Ar~~~r~~~G~~~~f~~~~s~~~~~~~ 289 (1359)
+++||.+++||+|||+|++|||||+|++|++|++..+ ++..++
T Consensus 155 ~~~~r~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~-------------------------------------~~~~~~ 197 (443)
T COG0038 155 REDRRILLAAGAAAGLAAAFNAPLAGALFAIEVLYGR-------------------------------------FLEYRA 197 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhh-------------------------------------cccHHH
Confidence 9999999999999999999999999999999997432 133344
Q ss_pred ccccccccccccccccchhhhhHhhhhhhHhhhhhccccccccccccCCcccccccccccCCCCCCcccCCCCCCCCCcc
Q psy9748 290 LWRSFPFSIYIRSIPTKWMCDKFELAGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQPKPL 369 (1359)
Q Consensus 290 ~w~~f~~~i~~~~~~~~w~~~~~~~~~~iA~~i~i~~~wl~dlk~G~c~~~~~~~~~~cc~~~~~~~~~~~~~~~~~~~~ 369 (1359)
++.++++ +++|..+. + .+++.
T Consensus 198 l~p~~va-------------------a~va~~v~---------~----------------------~~~~~--------- 218 (443)
T COG0038 198 LVPVLVA-------------------AVVALLVA---------G----------------------LFGGP--------- 218 (443)
T ss_pred HHHHHHH-------------------HHHHHHHH---------H----------------------HcCCC---------
Confidence 4445544 66666666 2 11110
Q ss_pred cccccceeeccccccccCCCCCcccccchhhhhhhccCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCC
Q psy9748 370 QQHQQHFHYDILNNYEDVNKPPGVLLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIP 449 (1359)
Q Consensus 370 ~~~~~~f~v~~~~~~~~~~~~~~~~~~W~~w~~~~~~~~~~~~~~~~e~i~fil~gv~~~gl~g~l~~~~~~~~~g~Gi~ 449 (1359)
+. .+.+ ..+. +| ...++..|+++|+ ++|++|.++.....+.
T Consensus 219 --~~-~~~~------~~~~-------~~----------------~~~~~~~~~~lGi-i~G~~g~~~~~~~~~~------ 259 (443)
T COG0038 219 --HF-LLPI------VTTP-------HM----------------SLWDLLLYLVLGI-IAGLFGVLLSRLLALS------ 259 (443)
T ss_pred --Cc-eeec------cccC-------cC----------------CHHHHHHHHHHHH-HHHHHHHHHHHHHHHH------
Confidence 00 0111 0111 23 5678999999999 8999987766654322
Q ss_pred ccccCCCCCCCCCccccccccccchhhhhhhhhhccCCCCCCccccCCCCCCCcccccccchhhhhhhcCCCcccccccc
Q psy9748 450 EALTHPHSLHSDPLSVLTQDSMTVQDVETNYRERERGGQKYPWALFPAGYSGPKFRCLGLDREKAEKEMGNGRTLSLSED 529 (1359)
Q Consensus 450 eik~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 529 (1359)
++++++... +.++.
T Consensus 260 ----------------------------~~~~~~~~~--~~~~~------------------------------------ 273 (443)
T COG0038 260 ----------------------------RRFFRRLPL--PPLLR------------------------------------ 273 (443)
T ss_pred ----------------------------HHHHhcCcc--hHHHH------------------------------------
Confidence 222222211 00000
Q ss_pred cceeEEEeecccccchhhhhhhcccCCCcccCCCCCcccccccccchhhhhhhhhccccchhhhcccchhhHHhhhcccc
Q psy9748 530 EGIIDITTSGTMNERHLAEQINISHGSGFLDSDEIPGIGQYEDFHTIDWQRDLARDRMRHRYIVKRKQNSIIDLIKGAHD 609 (1359)
Q Consensus 530 e~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (1359)
..+..++.+ ++.+ .. |. ..+
T Consensus 274 ---~~~~g~l~g-------------------------~~~l----~~-----------P~-----------------~lg 293 (443)
T COG0038 274 ---PALGGLLVG-------------------------ALGL----LF-----------PE-----------------VLG 293 (443)
T ss_pred ---HHHHHHHHH-------------------------HHHH----hc-----------hh-----------------hhC
Confidence 000000000 1111 00 00 000
Q ss_pred ccchhhhhhhccccccccccccCCCccccccccccccCCCCCCCCCCCCCCCchhHHHHH-HHHHHHHHHHHHHhhcCCc
Q psy9748 610 AWSGWLCVLLVGLVTDKFIGCCNFFECFAFSDYVINHNATSTSNPTTSEAGPGVYTAVWL-LMITLVLKLVLTVFTFGIK 688 (1359)
Q Consensus 610 ~~~~~~~~~~~~L~~~~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~~~v~K~~lt~~T~G~g 688 (1359)
.++++.. ..++ +.. ... ++++++.|+++|++|+|+|
T Consensus 294 ~G~~~~~---------------------~~~~------------------~~~----~~~~l~~l~~~K~l~t~~s~gSG 330 (443)
T COG0038 294 NGYGLIQ---------------------LALA------------------GEG----GLLVLLLLFLLKLLATLLSYGSG 330 (443)
T ss_pred CCccHHH---------------------HHHc------------------cCc----cHHHHHHHHHHHHHHHHHHHhcC
Confidence 0011111 0000 001 122 7788999999999999999
Q ss_pred ccceeehHHHHHHHHHhHHHHHHhHHhhhhhhhhhhhccCCccccCHHHHHHHHhhccccceechhHHHHHHHHHhcCCc
Q psy9748 689 VPCGRLYLALFEQNKQGTYLSFYFIYFSVSLVVIMFELTGGVRYIVPLMAAAMASKWHKKLKTLFRLSLVVIMFELTGGV 768 (1359)
Q Consensus 689 ~pgGif~PSL~iGA~~Gr~~g~~~~~~~~~~~~~~~~c~~~~~~i~pg~yAaaa~~a~l~gvtr~pls~vvi~~ElTG~~ 768 (1359)
.|||+|+|||++||++|.+++.+.+..++ .....|+.||+++|++++++++|+|+|++++++|+||++
T Consensus 331 ~~GGif~Psl~iGa~lG~~~g~~~~~~~~------------~~~~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~~ 398 (443)
T COG0038 331 APGGIFAPSLFIGAALGLAFGALLGLLFP------------PSILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNY 398 (443)
T ss_pred CCcceehHHHHHHHHHHHHHHHHHHhhcC------------ccccchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCc
Confidence 99999999999999999999999887643 225788999999999999999999999999999999999
Q ss_pred chHHHHhHHHHHHHHHHhhccCCCcchhhhhccCCCCCc
Q psy9748 769 RYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFLD 807 (1359)
Q Consensus 769 ~~ilP~miav~is~~v~~~~~~~sIYd~~I~lng~PfLd 807 (1359)
+.++|+|+++++|+++++..+++++|++.++.++.|...
T Consensus 399 ~~~l~ll~a~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (443)
T COG0038 399 QLLLPLLIACLIAYLVSRLLGGRPIYTQLLARRGAPILR 437 (443)
T ss_pred chHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcCchhhh
Confidence 999999999999999999999999999999999988443
No 13
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=2.5e-44 Score=422.27 Aligned_cols=350 Identities=27% Similarity=0.381 Sum_probs=245.1
Q ss_pred HHHHHHHHHHHhccCCCCCChHHHHHHHhccccccccCchhhhHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHhhhc
Q psy9748 124 FASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVHIASCIGNILSYLF 203 (1359)
Q Consensus 124 ~~~~a~~l~~~~~p~a~GsGIpeik~~l~g~~~~~~l~~~tl~~K~i~~~lav~sGls~GkEGP~vhiga~ig~~l~~~~ 203 (1359)
++.+++++++++.|+++||||||+++.+++.. +++++|+.+.|++++++++++|+|+|||||++|+|+++|+.++|++
T Consensus 2 ~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~--~~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~~ 79 (355)
T PF00654_consen 2 GGLLSGLLWKKFAPEAAGSGIPEVKAALRGKS--GRLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRRF 79 (355)
T ss_dssp HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTSS-----HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeeHHHHHHCCccCCCCHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHhh
Confidence 56778888999999999999999999999853 4599999999999999999999999999999999999999999998
Q ss_pred ccCCCChhh-HHHHHHhhHhhhhhhhcCCCccceeeeeeecccccceeehhhhhhhhhhccccccccccccccccccccc
Q psy9748 204 PKYGRNEAK-KREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFFLFFRIFHLEMEGRRRRGRPRLRWVDMIHNDIEKEVS 282 (1359)
Q Consensus 204 ~~~~~~~~~-~r~ll~agaaAGvaa~FgaPigGvlFalE~l~~~~~~~~~~~~~~~~~~~Ar~~~r~~~G~~~~f~~~~s 282 (1359)
+.++++ +|.+++||+|||+|++|+||++|++|++|++.
T Consensus 80 ---~~~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~-------------------------------------- 118 (355)
T PF00654_consen 80 ---RLSRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELS-------------------------------------- 118 (355)
T ss_dssp ---T--CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTC--------------------------------------
T ss_pred ---cccchHHHhHHHHHHHHHHHHHHhcCCcccceehhheee--------------------------------------
Confidence 555555 88899999999999999999999999999953
Q ss_pred cccccccccccccccccccccccchhhhhHhhhhhhHhhhhhccccccccccccCCcccccccccccCCCCCCcccCCCC
Q psy9748 283 YYFPLKTLWRSFPFSIYIRSIPTKWMCDKFELAGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGN 362 (1359)
Q Consensus 283 ~~~~~~~~w~~f~~~i~~~~~~~~w~~~~~~~~~~iA~~i~i~~~wl~dlk~G~c~~~~~~~~~~cc~~~~~~~~~~~~~ 362 (1359)
..+..+.+|+++++ +++|+++. +. +. ++
T Consensus 119 ~~~~~~~~~~~~~a-------------------s~~a~~v~---------~~----------------------~~--~~ 146 (355)
T PF00654_consen 119 RDFSVRLLLPALVA-------------------SIVATLVS---------RL----------------------LF--GN 146 (355)
T ss_dssp HCCSTTTHHHHHHH-------------------HHHHHHHH---------HH----------------------HH--TS
T ss_pred ccccchhhHHHHHH-------------------HHHHHHHH---------HH----------------------Hc--Cc
Confidence 23445667777777 78888777 21 00 00
Q ss_pred CCCCCccccccccee-eccccccccCCCCCcccccchhhhhhhccCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9748 363 CSQPKPLQQHQQHFH-YDILNNYEDVNKPPGVLLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAP 441 (1359)
Q Consensus 363 ~~~~~~~~~~~~~f~-v~~~~~~~~~~~~~~~~~~W~~w~~~~~~~~~~~~~~~~e~i~fil~gv~~~gl~g~l~~~~~~ 441 (1359)
. ..|. ++ ++. .| .+.+++.|+++|+ ++|+.|.+|.+...
T Consensus 147 ~----------~~f~~~~------~~~-------~~----------------~~~~~~~~~llGi-~~Gl~g~~f~~~~~ 186 (355)
T PF00654_consen 147 H----------PIFGSVP------QLF-------PF----------------SLWELPLFLLLGI-ICGLLGALFNRLLR 186 (355)
T ss_dssp S-----------SS---T------T----------------------------GGGHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred C----------ccccccc------ccc-------cC----------------CHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 0 0011 10 000 13 5568999999999 99999999999877
Q ss_pred hhcccCCCccccCCCCCCCCCccccccccccchhhhhhhhhhccCCCCCCccccCCCCCCCcccccccchhhhhhhcCCC
Q psy9748 442 YACGSGIPEALTHPHSLHSDPLSVLTQDSMTVQDVETNYRERERGGQKYPWALFPAGYSGPKFRCLGLDREKAEKEMGNG 521 (1359)
Q Consensus 442 ~~~g~Gi~eik~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 521 (1359)
++ ++++++....+..++
T Consensus 187 ~~----------------------------------~~~~~~~~~~~~~~~----------------------------- 203 (355)
T PF00654_consen 187 WL----------------------------------RKFFRKLKRLKIPPI----------------------------- 203 (355)
T ss_dssp HH----------------------------------HHHHHHHHTTCHHHH-----------------------------
T ss_pred HH----------------------------------HHHHHHhcccccchH-----------------------------
Confidence 76 232222111000000
Q ss_pred cccccccccceeEEEeecccccchhhhhhhcccCCCcccCCCCCcccccccccchhhhhhhhhccccchh--hhcccchh
Q psy9748 522 RTLSLSEDEGIIDITTSGTMNERHLAEQINISHGSGFLDSDEIPGIGQYEDFHTIDWQRDLARDRMRHRY--IVKRKQNS 599 (1359)
Q Consensus 522 ~~~~~~~~e~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 599 (1359)
++ ..+.+++++ ++.+ ..|+ .-. ...+
T Consensus 204 -------l~--~~i~gl~~g-------------------------~l~~-----------------~~p~~~~~g-~G~~ 231 (355)
T PF00654_consen 204 -------LR--PVIGGLVIG-------------------------LLAF-----------------FFPEGSVLG-SGYE 231 (355)
T ss_dssp -------HH--HHHHHHHHH-------------------------HHHH-----------------SSGG-SGSS-SSTT
T ss_pred -------HH--HHHHHHHHH-------------------------HHHH-----------------HHhhhcccC-CcHH
Confidence 01 222233332 2222 1111 111 1112
Q ss_pred hHHhhhccccccchhhhhhhccccccccccccCCCccccccccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q psy9748 600 IIDLIKGAHDAWSGWLCVLLVGLVTDKFIGCCNFFECFAFSDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLV 679 (1359)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~K~~ 679 (1359)
.++. ++++ + ........|+.+++.|++
T Consensus 232 ~i~~------------------ll~~---------------------~--------------~~~~~~~~l~~~~~~K~~ 258 (355)
T PF00654_consen 232 LIQS------------------LLSG---------------------S--------------PPWFSLGSLLLLFLLKFL 258 (355)
T ss_dssp HHHH------------------HCTT---------------------------------------S-HHHHHHHHHHHHH
T ss_pred HHHH------------------HHcC---------------------C--------------cchhhHHHHHHHHHHHHH
Confidence 2221 2222 0 001245678999999999
Q ss_pred HHHhhcCCcccceeehHHHHHHHHHhHHHHHHhHHhhhhhhhhhhhccCCccccCHHHHHHHHhhccccceechhHHHHH
Q psy9748 680 LTVFTFGIKVPCGRLYLALFEQNKQGTYLSFYFIYFSVSLVVIMFELTGGVRYIVPLMAAAMASKWHKKLKTLFRLSLVV 759 (1359)
Q Consensus 680 lt~~T~G~g~pgGif~PSL~iGA~~Gr~~g~~~~~~~~~~~~~~~~c~~~~~~i~pg~yAaaa~~a~l~gvtr~pls~vv 759 (1359)
+|++|+|+|+|||+|.|+|++||++|++++.+++..+|+ ....+|+.||+++|+|++++++|+|+|+++
T Consensus 259 ~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~-----------~~~~~~~~~al~G~~a~~~a~~~~Plt~~v 327 (355)
T PF00654_consen 259 ATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPG-----------ISSVDPGVYALVGMAAFLAAVTRAPLTAIV 327 (355)
T ss_dssp HHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GG-----------G-T-SHHHHHHHHTTHHHHHHCS-HHHHHH
T ss_pred HHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCC-----------cCCCchHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999887542 223489999999999999999999999999
Q ss_pred HHHHhcCCcchHHHHhHHHHHHHHHHhh
Q psy9748 760 IMFELTGGVRYIVPLMAAAMASKWVGDA 787 (1359)
Q Consensus 760 i~~ElTG~~~~ilP~miav~is~~v~~~ 787 (1359)
+++|+||++++++|+|+++++|++++++
T Consensus 328 l~~Eltg~~~~~~p~lia~~~a~~v~~~ 355 (355)
T PF00654_consen 328 LVLELTGDFQLLLPLLIAVAVAYLVARW 355 (355)
T ss_dssp HHHHHH--GGGHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999874
No 14
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=9.3e-44 Score=422.23 Aligned_cols=118 Identities=33% Similarity=0.479 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhccCCCCCChHHHHHHHhcc---ccccccCchhhhHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHh
Q psy9748 124 FASLAAGLVRMFAPYACGSGIPEIKTILSGF---IIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVHIASCIGNILS 200 (1359)
Q Consensus 124 ~~~~a~~l~~~~~p~a~GsGIpeik~~l~g~---~~~~~l~~~tl~~K~i~~~lav~sGls~GkEGP~vhiga~ig~~l~ 200 (1359)
.++++++++++++|+++||||||++..+++. .+++++++|+++.|++++++++++|+|+|||||+||+|+++|+.++
T Consensus 36 ~~~~~~~~~~~~~p~~~gsGi~~v~~~~~~~~~~~~~~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~ 115 (390)
T cd01034 36 GFALIAWLTRRFFPGAAGSGIPQVIAALELPSAAARRRLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIG 115 (390)
T ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHH
Confidence 3456667777799999999999999999863 2456899999999999999999999999999999999999999999
Q ss_pred hhcccCCC-ChhhHHHHHHhhHhhhhhhhcCCCccceeeeeeecc
Q psy9748 201 YLFPKYGR-NEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVS 244 (1359)
Q Consensus 201 ~~~~~~~~-~~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l~ 244 (1359)
|++ +. ++++||++++||+|||+|++|+||++|++|++|+++
T Consensus 116 ~~~---~~~~~~~~r~li~~GaaAGlaa~F~aPlaG~lF~~E~~~ 157 (390)
T cd01034 116 RRL---PKWGGLSERGLILAGGAAGLAAAFNTPLAGIVFAIEELS 157 (390)
T ss_pred HHc---ccCchHHHHHHHHHHHHHhHHHHhCCcchhHHHHHHHhh
Confidence 998 44 478999999999999999999999999999999964
No 15
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=2.6e-43 Score=424.24 Aligned_cols=372 Identities=22% Similarity=0.273 Sum_probs=265.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCChHHHHHHHhccccccccC-chhhhHHHHHHHHHhhcCCCCCCcchHHHHH
Q psy9748 114 YVFFIAWALLFASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLG-KWTLIIKSVGIMLAVSAGLSLGKEGPMVHIA 192 (1359)
Q Consensus 114 ~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGIpeik~~l~g~~~~~~l~-~~tl~~K~i~~~lav~sGls~GkEGP~vhig 192 (1359)
|..+++.+..++.++.+++++++|.++|||||||+..++|.. .++ .++++.|++++++++++|+|+|||||++|+|
T Consensus 44 ~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~~l~~~~---~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iG 120 (438)
T PRK05277 44 WIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEGALEGLR---PVRWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMG 120 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCC---ccchHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHH
Confidence 344556677777788899999999999999999999999743 244 6789999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCCC-ChhhHHHHHHhhHhhhhhhhcCCCccceeeeeeecccccceeehhhhhhhhhhcccccccccc
Q psy9748 193 SCIGNILSYLFPKYGR-NEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFFLFFRIFHLEMEGRRRRGRPRLRWVD 271 (1359)
Q Consensus 193 a~ig~~l~~~~~~~~~-~~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l~~~~~~~~~~~~~~~~~~~Ar~~~r~~~ 271 (1359)
+++|+.+++++ +. +++++|++++||+|||+|++|+||++|++|++|++..++
T Consensus 121 a~ig~~~~~~~---~~~~~~~~~~li~~G~aaglaa~f~APl~g~lf~~E~~~~~~------------------------ 173 (438)
T PRK05277 121 GNIGRMVLDIF---RLRSDEARHTLLAAGAAAGLAAAFNAPLAGILFVIEEMRPQF------------------------ 173 (438)
T ss_pred HHHHHHHHHHc---ccCCHHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHHhhc------------------------
Confidence 99999999998 45 788999999999999999999999999999999963211
Q ss_pred ccccccccccccccccccccccccccccccccccchhhhhHhhhhhhHhhhhhccccccccccccCCcccccccccccCC
Q psy9748 272 MIHNDIEKEVSYYFPLKTLWRSFPFSIYIRSIPTKWMCDKFELAGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWS 351 (1359)
Q Consensus 272 G~~~~f~~~~s~~~~~~~~w~~f~~~i~~~~~~~~w~~~~~~~~~~iA~~i~i~~~wl~dlk~G~c~~~~~~~~~~cc~~ 351 (1359)
.+..+.++..+++ +++|.++. +.
T Consensus 174 ------------~~~~~~~~~~~~a-------------------~~~a~~v~---------~~----------------- 196 (438)
T PRK05277 174 ------------RYSLISIKAVFIG-------------------VIMATIVF---------RL----------------- 196 (438)
T ss_pred ------------cccHHHHHHHHHH-------------------HHHHHHHH---------HH-----------------
Confidence 1122334444444 66666665 20
Q ss_pred CCCCcccCCCCCCCCCcccccccceeeccccccccCCCCCcccccchhhhhhhccCccccccchhHHHHHHHHHHHHHHH
Q psy9748 352 SNETSFEDTGNCSQPKPLQQHQQHFHYDILNNYEDVNKPPGVLLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASL 431 (1359)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~~~~~W~~w~~~~~~~~~~~~~~~~e~i~fil~gv~~~gl 431 (1359)
+. + +...|+++ .++ .| ...+++.|+++|+ ++|+
T Consensus 197 -----~~--g----------~~~~~~~~------~~~-------~~----------------~~~~l~~~i~lGi-~~G~ 229 (438)
T PRK05277 197 -----FN--G----------EQAVIEVG------KFS-------AP----------------PLNTLWLFLLLGI-IFGI 229 (438)
T ss_pred -----hc--C----------CCceEecc------CCC-------CC----------------CHHHHHHHHHHHH-HHHH
Confidence 00 0 00112220 111 12 3457888999999 9999
Q ss_pred HHHHHHHhhhhhcccCCCccccCCCCCCCCCccccccccccchhhhhhhhhhccCCCCCCccccCCCCCCCcccccccch
Q psy9748 432 AAGLVRMFAPYACGSGIPEALTHPHSLHSDPLSVLTQDSMTVQDVETNYRERERGGQKYPWALFPAGYSGPKFRCLGLDR 511 (1359)
Q Consensus 432 ~g~l~~~~~~~~~g~Gi~eik~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 511 (1359)
.|.+|+....+. .+++++... ++++.
T Consensus 230 ~g~lf~~~~~~~----------------------------------~~~~~~~~~--~~~~~------------------ 255 (438)
T PRK05277 230 FGVLFNKLLLRT----------------------------------QDLFDRLHG--GNKKR------------------ 255 (438)
T ss_pred HHHHHHHHHHHH----------------------------------HHHHHhccc--cccHH------------------
Confidence 999998876655 222211110 00000
Q ss_pred hhhhhhcCCCcccccccccceeEEEeecccccchhhhhhhcccCCCcccCCCCCcccccccccchhhhhhhhhccccchh
Q psy9748 512 EKAEKEMGNGRTLSLSEDEGIIDITTSGTMNERHLAEQINISHGSGFLDSDEIPGIGQYEDFHTIDWQRDLARDRMRHRY 591 (1359)
Q Consensus 512 ~~~~~~~~n~~~~~~~~~e~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (1359)
+... ..+++++++ .+.+ + .|+
T Consensus 256 ---------------~~~~--~~i~gl~~g-------------------------~l~~-------~--------~p~-- 276 (438)
T PRK05277 256 ---------------WVLM--GGAVGGLCG-------------------------LLGL-------L--------APA-- 276 (438)
T ss_pred ---------------HHHH--HHHHHHHHH-------------------------HHHH-------H--------hhh--
Confidence 0000 011111111 1111 0 010
Q ss_pred hhcccchhhHHhhhccccccchhhhhhhccccccccccccCCCccccccccccccCCCCCCCCCCCCCCCchhHHHHHHH
Q psy9748 592 IVKRKQNSIIDLIKGAHDAWSGWLCVLLVGLVTDKFIGCCNFFECFAFSDYVINHNATSTSNPTTSEAGPGVYTAVWLLM 671 (1359)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 671 (1359)
... .+.+.+.. ++.+ . ..+..++
T Consensus 277 ~~g-~G~~~i~~------------------~~~~-------------------------------------~-~~~~~l~ 299 (438)
T PRK05277 277 AVG-GGFNLIPI------------------ALAG-------------------------------------N-FSIGMLL 299 (438)
T ss_pred hcC-ChHHHHHH------------------HHcC-------------------------------------C-chHHHHH
Confidence 000 00011000 0000 0 1223466
Q ss_pred HHHHHHHHHHHhhcCCcccceeehHHHHHHHHHhHHHHHHhHHhhhhhhhhhhhccCCccccCHHHHHHHHhhcccccee
Q psy9748 672 ITLVLKLVLTVFTFGIKVPCGRLYLALFEQNKQGTYLSFYFIYFSVSLVVIMFELTGGVRYIVPLMAAAMASKWHKKLKT 751 (1359)
Q Consensus 672 ~~~v~K~~lt~~T~G~g~pgGif~PSL~iGA~~Gr~~g~~~~~~~~~~~~~~~~c~~~~~~i~pg~yAaaa~~a~l~gvt 751 (1359)
..++.|+++|++|+|+|.|||+|.|++++||++|+++|.+++.++| ...++|..||++||+|++++++
T Consensus 300 ~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~p------------~~~~~~~~~a~~G~aA~la~~~ 367 (438)
T PRK05277 300 FIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFP------------QYHIEPGTFAIAGMGALFAATV 367 (438)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC------------cccccHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999999999999998877643 2356899999888888899999
Q ss_pred chhHHHHHHHHHhcCCcchHHHHhHHHHHHHHHHhhccCCCcchhhhhcc
Q psy9748 752 LFRLSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLN 801 (1359)
Q Consensus 752 r~pls~vvi~~ElTG~~~~ilP~miav~is~~v~~~~~~~sIYd~~I~ln 801 (1359)
|+|+|++++++|+||++++++|+|+++++|+++++.++++++||.+++.-
T Consensus 368 ~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~~~iy~~~l~~~ 417 (438)
T PRK05277 368 RAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGGKPIYSALLERT 417 (438)
T ss_pred HhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999754
No 16
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.7e-41 Score=402.21 Aligned_cols=335 Identities=19% Similarity=0.244 Sum_probs=239.0
Q ss_pred HHHHHHHhccCCCCCChHHHHHHHhccccccccCchhhhHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHhhhcccCC
Q psy9748 128 AAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVHIASCIGNILSYLFPKYG 207 (1359)
Q Consensus 128 a~~l~~~~~p~a~GsGIpeik~~l~g~~~~~~l~~~tl~~K~i~~~lav~sGls~GkEGP~vhiga~ig~~l~~~~~~~~ 207 (1359)
.+.+.+++.+ .+|+|||||+..+++ ++.+++++.+.|.+++++++++|+|+|||||+||+|+++|+.++|++ +
T Consensus 52 ~~~l~~~~~~-~~g~gi~~v~~~~~~---~~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~~---~ 124 (388)
T cd01033 52 IAGLGWYLLR-RKGKKLVSIKQAVRG---KKRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDWL---G 124 (388)
T ss_pred HHHHHHHHHh-ccCCCcccHHHHhcC---CCCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHHh---C
Confidence 3334344433 369999999999997 35589999999999999999999999999999999999999999998 7
Q ss_pred CChhhHHHHHHhhHhhhhhhhcCCCccceeeeeeecccccceeehhhhhhhhhhcccccccccccccccccccccccccc
Q psy9748 208 RNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFFLFFRIFHLEMEGRRRRGRPRLRWVDMIHNDIEKEVSYYFPL 287 (1359)
Q Consensus 208 ~~~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l~~~~~~~~~~~~~~~~~~~Ar~~~r~~~G~~~~f~~~~s~~~~~ 287 (1359)
.++++||++++||+|||+|++|+||++|++|++|+++.+++.
T Consensus 125 ~~~~~~r~li~~GaaAGlaa~F~aPlaG~lFalE~~~~~~~~-------------------------------------- 166 (388)
T cd01033 125 LTVADRRLLVACAAGAGLAAVYNVPLAGALFALEILLRTISL-------------------------------------- 166 (388)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhccH--------------------------------------
Confidence 889999999999999999999999999999999997443332
Q ss_pred ccccccccccccccccccchhhhhHhhhhhhHhhhhhccccccccccccCCcccccccccccCCCCCCcccCCCCCCCCC
Q psy9748 288 KTLWRSFPFSIYIRSIPTKWMCDKFELAGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQPK 367 (1359)
Q Consensus 288 ~~~w~~f~~~i~~~~~~~~w~~~~~~~~~~iA~~i~i~~~wl~dlk~G~c~~~~~~~~~~cc~~~~~~~~~~~~~~~~~~ 367 (1359)
+.++..+++ +++|+++. +. + +++
T Consensus 167 ~~~~~~~~a-------------------s~~a~~v~---------~~----------------------~--~g~----- 189 (388)
T cd01033 167 RSVVAALAT-------------------SAIAAAVA---------SL----------------------L--KGD----- 189 (388)
T ss_pred HHHHHHHHH-------------------HHHHHHHH---------HH----------------------h--CCC-----
Confidence 333344444 66676666 20 0 010
Q ss_pred cccccccceeeccccccccCCCCCcccccchhhhhhhccCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Q psy9748 368 PLQQHQQHFHYDILNNYEDVNKPPGVLLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSG 447 (1359)
Q Consensus 368 ~~~~~~~~f~v~~~~~~~~~~~~~~~~~~W~~w~~~~~~~~~~~~~~~~e~i~fil~gv~~~gl~g~l~~~~~~~~~g~G 447 (1359)
...|.++ ++ ++ ...+++.++++|+ ++|+.+.+|+....+.
T Consensus 190 -----~~~f~~~------~~--------~~----------------~~~~l~~~illGi-~~Gl~~~lf~~~~~~~---- 229 (388)
T cd01033 190 -----HPIYDIP------PM--------QL----------------STPLLIWALLAGP-VLGVVAAGFRRLSQAA---- 229 (388)
T ss_pred -----CceeecC------CC--------CC----------------CHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----
Confidence 1122221 11 11 2346788999998 9999999998876655
Q ss_pred CCccccCCCCCCCCCccccccccccchhhhhhhhhhccCCCCCCccccCCCCCCCcccccccchhhhhhhcCCCcccccc
Q psy9748 448 IPEALTHPHSLHSDPLSVLTQDSMTVQDVETNYRERERGGQKYPWALFPAGYSGPKFRCLGLDREKAEKEMGNGRTLSLS 527 (1359)
Q Consensus 448 i~eik~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 527 (1359)
++++++.. +++.
T Consensus 230 ------------------------------~~~~~~~~----~~~~---------------------------------- 241 (388)
T cd01033 230 ------------------------------RAKRPKGK----RILW---------------------------------- 241 (388)
T ss_pred ------------------------------HHHhcccc----chHH----------------------------------
Confidence 22221110 0100
Q ss_pred cccceeEEEeecccccchhhhhhhcccCCCcccCCCCCcccccccccchhhhhhhhhccccchhhhcccchhhHHhhhcc
Q psy9748 528 EDEGIIDITTSGTMNERHLAEQINISHGSGFLDSDEIPGIGQYEDFHTIDWQRDLARDRMRHRYIVKRKQNSIIDLIKGA 607 (1359)
Q Consensus 528 ~~e~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (1359)
. ..+.+++++ ++.+ +. | +... ...+.++.
T Consensus 242 --~--~~l~gl~~g-------------------------~~~~-------~~--------p--~~~G-~G~~~i~~---- 270 (388)
T cd01033 242 --Q--MPLAFLVIG-------------------------LLSI-------FF--------P--QILG-NGRALAQL---- 270 (388)
T ss_pred --H--HHHHHHHHH-------------------------HHHH-------HH--------H--HHhC-CcHHHHHH----
Confidence 0 000111111 1111 00 1 0000 11111111
Q ss_pred ccccchhhhhhhccccccccccccCCCccccccccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhcCC
Q psy9748 608 HDAWSGWLCVLLVGLVTDKFIGCCNFFECFAFSDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLTVFTFGI 687 (1359)
Q Consensus 608 ~~~~~~~~~~~~~~L~~~~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~K~~lt~~T~G~ 687 (1359)
++.+ ......++..++.|+++|++|+|+
T Consensus 271 --------------~~~~--------------------------------------~~~~~~ll~~~~~K~~~t~lt~gs 298 (388)
T cd01033 271 --------------AFST--------------------------------------TLTLSLLLILLVLKIVATLLALRA 298 (388)
T ss_pred --------------HHcC--------------------------------------CchHHHHHHHHHHHHHHHHHHHcc
Confidence 1111 012335677889999999999999
Q ss_pred cccceeehHHHHHHHHHhHHHHHHhHHhhhhhhhhhhhccCCccccCHHHHHHHHhhccccceechhHHHHHHHHHhcC-
Q psy9748 688 KVPCGRLYLALFEQNKQGTYLSFYFIYFSVSLVVIMFELTGGVRYIVPLMAAAMASKWHKKLKTLFRLSLVVIMFELTG- 766 (1359)
Q Consensus 688 g~pgGif~PSL~iGA~~Gr~~g~~~~~~~~~~~~~~~~c~~~~~~i~pg~yAaaa~~a~l~gvtr~pls~vvi~~ElTG- 766 (1359)
|.|||+|.|++++||++|+++|..++..+ +..+|..|+++||+|++++++|+|+|++++++|+||
T Consensus 299 G~~GG~f~P~l~iGa~~G~~~g~~~~~~~--------------p~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~ 364 (388)
T cd01033 299 GAYGGLLTPSLALGALLGALLGIVWNALL--------------PPLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQ 364 (388)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHhC--------------CcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCC
Confidence 99999999999999999999999887642 135788999888899999999999999999999999
Q ss_pred CcchHHHHhHHHHHHHHHHhhcc
Q psy9748 767 GVRYIVPLMAAAMASKWVGDALG 789 (1359)
Q Consensus 767 ~~~~ilP~miav~is~~v~~~~~ 789 (1359)
++++++|+|+++++|+.+++.+.
T Consensus 365 ~~~~l~Pl~ia~~~a~~vs~~~~ 387 (388)
T cd01033 365 NPLFLIPLMLAVAGAVAVSRFIL 387 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998764
No 17
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=2e-37 Score=367.51 Aligned_cols=343 Identities=23% Similarity=0.300 Sum_probs=244.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCChHHHHHHHhccccccccCchhhhHHHHHHHHHhhcCCCCCCcchHHHHHHHHHH
Q psy9748 118 IAWALLFASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVHIASCIGN 197 (1359)
Q Consensus 118 ~~~~~~~~~~a~~l~~~~~p~a~GsGIpeik~~l~g~~~~~~l~~~tl~~K~i~~~lav~sGls~GkEGP~vhiga~ig~ 197 (1359)
.+.++..+.+...+.++..| +.|+|+||++..+++. ++.+++++++.|++++++++++|+|+|||||++|+|+++|+
T Consensus 41 ~~~~~~g~~~v~l~~~~~~~-~~g~G~~~v~~~~~~~--~~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~ 117 (383)
T cd00400 41 LLVPVIGGLLVGLLVRLLGP-ARGHGIPEVIEAIALG--GGRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGS 117 (383)
T ss_pred HHHHHHHHHHHHHHHHHhCc-ccCCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHH
Confidence 34445555555566665555 8899999999988863 45689999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCChhhHHHHHHhhHhhhhhhhcCCCccceeeeeeecccccceeehhhhhhhhhhcccccccccccccccc
Q psy9748 198 ILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFFLFFRIFHLEMEGRRRRGRPRLRWVDMIHNDI 277 (1359)
Q Consensus 198 ~l~~~~~~~~~~~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l~~~~~~~~~~~~~~~~~~~Ar~~~r~~~G~~~~f 277 (1359)
.+++++ +.++.++|++++||+|||+|++|++|++|++|++|++..+
T Consensus 118 ~~~~~~---~~~~~~~~~l~~~G~aaglaa~f~aPl~g~lf~~E~~~~~------------------------------- 163 (383)
T cd00400 118 WLGRRL---RLSRNDRRILVACGAAAGIAAAFNAPLAGALFAIEVLLGE------------------------------- 163 (383)
T ss_pred HHHHHh---CCCHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHh-------------------------------
Confidence 999998 5688899999999999999999999999999999996322
Q ss_pred ccccccccccccccccccccccccccccchhhhhHhhhhhhHhhhhhccccccccccccCCcccccccccccCCCCCCcc
Q psy9748 278 EKEVSYYFPLKTLWRSFPFSIYIRSIPTKWMCDKFELAGSVAGIIDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSF 357 (1359)
Q Consensus 278 ~~~~s~~~~~~~~w~~f~~~i~~~~~~~~w~~~~~~~~~~iA~~i~i~~~wl~dlk~G~c~~~~~~~~~~cc~~~~~~~~ 357 (1359)
+..+.++..+++ +.+|.++. +. +
T Consensus 164 -------~~~~~~~~~~~~-------------------~~~a~~v~---------~~----------------------~ 186 (383)
T cd00400 164 -------YSVASLIPVLLA-------------------SVAAALVS---------RL----------------------L 186 (383)
T ss_pred -------ccHHHHHHHHHH-------------------HHHHHHHH---------HH----------------------H
Confidence 112344445544 67777666 21 0
Q ss_pred cCCCCCCCCCcccccccceeeccccccccCCCCCcccccchhhhhhhccCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy9748 358 EDTGNCSQPKPLQQHQQHFHYDILNNYEDVNKPPGVLLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVR 437 (1359)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~~~~~W~~w~~~~~~~~~~~~~~~~e~i~fil~gv~~~gl~g~l~~ 437 (1359)
.+ +...|.++ .+ . .| ...+++.++++|+ ++|+.|.+|+
T Consensus 187 ~~------------~~~~~~~~------~~-~------~~----------------~~~~~~~~il~Gv-~~g~~g~~f~ 224 (383)
T cd00400 187 FG------------AEPAFGVP------LY-D------PL----------------SLLELPLYLLLGL-LAGLVGVLFV 224 (383)
T ss_pred cC------------CCCeeeCC------CC-C------cC----------------CHHHHHHHHHHHH-HHHHHHHHHH
Confidence 00 00111110 00 0 13 4568889999999 9999999999
Q ss_pred HhhhhhcccCCCccccCCCCCCCCCccccccccccchhhhhhhhhhccCCCCCCccccCCCCCCCcccccccchhhhhhh
Q psy9748 438 MFAPYACGSGIPEALTHPHSLHSDPLSVLTQDSMTVQDVETNYRERERGGQKYPWALFPAGYSGPKFRCLGLDREKAEKE 517 (1359)
Q Consensus 438 ~~~~~~~g~Gi~eik~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1359)
+...+. .+++++.. +.++.
T Consensus 225 ~~~~~~----------------------------------~~~~~~~~---~~~~~------------------------ 243 (383)
T cd00400 225 RLLYKI----------------------------------ERLFRRLP---IPPWL------------------------ 243 (383)
T ss_pred HHHHHH----------------------------------HHHHhccC---CcHHH------------------------
Confidence 877666 23222211 00100
Q ss_pred cCCCcccccccccceeEEEeecccccchhhhhhhcccCCCcccCCCCCcccccccccchhhhhhhhhccccchhhhcccc
Q psy9748 518 MGNGRTLSLSEDEGIIDITTSGTMNERHLAEQINISHGSGFLDSDEIPGIGQYEDFHTIDWQRDLARDRMRHRYIVKRKQ 597 (1359)
Q Consensus 518 ~~n~~~~~~~~~e~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (1359)
. ..+.+++++ ++.+ ..|+......
T Consensus 244 ------------~--~~i~gll~~-------------------------~~~~-----------------~~p~~~g~G~ 267 (383)
T cd00400 244 ------------R--PALGGLLLG-------------------------LLGL-----------------FLPQVLGSGY 267 (383)
T ss_pred ------------H--HHHHHHHHH-------------------------HHHH-----------------HHHHHHcCcH
Confidence 1 111122222 1111 0011100000
Q ss_pred hhhHHhhhccccccchhhhhhhccccccccccccCCCccccccccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q psy9748 598 NSIIDLIKGAHDAWSGWLCVLLVGLVTDKFIGCCNFFECFAFSDYVINHNATSTSNPTTSEAGPGVYTAVWLLMITLVLK 677 (1359)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~K 677 (1359)
++ +.. .+. +. .....++..++.|
T Consensus 268 ~~-~~~------------------~~~-------------------------------------~~-~~~~~l~~~~~~K 290 (383)
T cd00400 268 GA-ILL------------------ALA-------------------------------------GE-LSLLLLLLLLLLK 290 (383)
T ss_pred HH-HHH------------------HHc-------------------------------------CC-hhHHHHHHHHHHH
Confidence 00 000 000 00 1234566788999
Q ss_pred HHHHHhhcCCcccceeehHHHHHHHHHhHHHHHHhHHhhhhhhhhhhhccCCccccCHHHHHHHHhhccccceechhHHH
Q psy9748 678 LVLTVFTFGIKVPCGRLYLALFEQNKQGTYLSFYFIYFSVSLVVIMFELTGGVRYIVPLMAAAMASKWHKKLKTLFRLSL 757 (1359)
Q Consensus 678 ~~lt~~T~G~g~pgGif~PSL~iGA~~Gr~~g~~~~~~~~~~~~~~~~c~~~~~~i~pg~yAaaa~~a~l~gvtr~pls~ 757 (1359)
+++|++|+|+|.|||+|.|++++||++|++++.+++.++| ..+++|..|+++|++|++++++|+|+|+
T Consensus 291 ~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~~~------------~~~~~~~~~~~~G~aa~la~~~~aPlt~ 358 (383)
T cd00400 291 LLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFP------------GLVASPGAYALVGMAALLAAVLRAPLTA 358 (383)
T ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCC------------cccCChHHHHHHHHHHHHHHHhCchHHH
Confidence 9999999999999999999999999999999999887643 2457899999888888899999999999
Q ss_pred HHHHHHhcCCcchHHHHhHHHHHHH
Q psy9748 758 VVIMFELTGGVRYIVPLMAAAMASK 782 (1359)
Q Consensus 758 vvi~~ElTG~~~~ilP~miav~is~ 782 (1359)
+++++|+||++++++|+|+++++|+
T Consensus 359 ~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 359 ILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred HHHHHHHhCChhhHHHHHHHHHhcC
Confidence 9999999999999999999999874
No 18
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.1e-35 Score=351.98 Aligned_cols=113 Identities=26% Similarity=0.365 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhccCCCCCChHHHHHHHhccccccccCchhhhHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHhhhcc
Q psy9748 125 ASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVHIASCIGNILSYLFP 204 (1359)
Q Consensus 125 ~~~a~~l~~~~~p~a~GsGIpeik~~l~g~~~~~~l~~~tl~~K~i~~~lav~sGls~GkEGP~vhiga~ig~~l~~~~~ 204 (1359)
+.+.+++.+++.|. .|+|++|++..+++. ++.++++.++.|+++..+++++|+|+|||||++|+|+++|+.+++++
T Consensus 41 g~~i~~l~~~~~~~-~~~g~~~v~~~~~~~--~~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~- 116 (378)
T cd03682 41 GLLIGYLYQKFGKN-SEKGNNLIIEEIHGP--EEGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVF- 116 (378)
T ss_pred HHHHHHHHHHhCcc-cCCChHHHHHHHHcc--CCCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHh-
Confidence 34445777777666 467999999888862 46788999999999999999999999999999999999999999998
Q ss_pred cCCCChhhHHHHHHhhHhhhhhhhcCCCccceeeeeeec
Q psy9748 205 KYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEV 243 (1359)
Q Consensus 205 ~~~~~~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l 243 (1359)
+.+++++|++++||+|||++++|+||++|++|++|++
T Consensus 117 --~~~~~~~r~l~~~g~aAglaa~f~aPl~g~~f~~E~~ 153 (378)
T cd03682 117 --KLPEEDRRILLIAGIAAGFAAVFGTPLAGAIFALEVL 153 (378)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 6778889999999999999999999999999999995
No 19
>KOG0476|consensus
Probab=100.00 E-value=1.3e-35 Score=352.71 Aligned_cols=159 Identities=20% Similarity=0.256 Sum_probs=152.1
Q ss_pred hhHhhhhhheeeeeeeeecccCCCCCCcccccCCCcceEEEeecccccccccccccchhhhhhcceeeeeeeccCCCCcc
Q psy9748 1165 EVSVFLDFAGYTHVDVLVSHTDNHTSNDARVNFGGQQDIFTFLGKQFEGGLQLTFKHILSLSSHGMIVVCFYLNSPPSVS 1244 (1359)
Q Consensus 1165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~g~f~~~~~~ips~~~g~~~g~~~~~~~p~~~~ 1244 (1359)
.+++|.++.+|++|+||| +|++++++||||.|||+| +.+.++||++||.|+.++|+|++
T Consensus 438 ~~~~f~tL~lf~l~~F~~-------------------siia~TipvPsG~FmPvF--ViGAafGRlvGE~m~~lfP~Gi~ 496 (931)
T KOG0476|consen 438 DVSIFGTLVLFFLMYFWM-------------------SIIATTIPVPSGVFMPVF--VIGAAFGRLVGEIMAVLFPEGIR 496 (931)
T ss_pred ceeeHHHHHHHHHHHHHH-------------------HHHHhccccCccceeeee--eechhhhhhhhhhheeecccccc
Confidence 589999999999999999 999999999999999998 55888999999999999999998
Q ss_pred ccccccccCCccCccceeeecccccccchhhhhhhhccccchhheehhhhhcCCcchHHHHHHHHHHHHHHHhhcCCCCh
Q psy9748 1245 SLVWPKVSLSNLTAMQTRMVVCTSNDLTLLLTFLTLFGTRDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGI 1324 (1359)
Q Consensus 1245 ~~~~~~~~~~~i~pg~ya~vg~a~~~~~~~~a~~~g~t~~tiS~~vI~fElTg~~~~ilPlMia~~ia~~v~~~~~~~si 1324 (1359)
.++...+|.||+||+|||| ||.|+||| |+|++||+||+|||+.|+||+|+|+++||+|++.+| +|+
T Consensus 497 ----~~gi~~~I~PG~YAVVGAA--------AfsGaVTH-TvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~LQ-PSi 562 (931)
T KOG0476|consen 497 ----GGGITPPIHPGGYAVVGAA--------AFSGAVTH-TVSVAVIIFELTGQLCHILPVMIAVLLANAVAASLQ-PSI 562 (931)
T ss_pred ----cCCccCccccchhhhhhhh--------hhccceee-eeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHhC-cch
Confidence 7788999999999999999 99999999 999999999999999999999999999999999999 999
Q ss_pred hhHHHhhcCCCCCCCchh---hcccccccccccCCCC
Q psy9748 1325 YDAHIMLNAYPFLDSKEE---FASTALASDVMQPKLR 1358 (1359)
Q Consensus 1325 Yd~~i~~k~~P~l~~~~~---~~~~~~v~diM~~~~~ 1358 (1359)
||++|++|++||||+.++ ..|++.|||+|++||+
T Consensus 563 YDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~dv~ 599 (931)
T KOG0476|consen 563 YDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVTDVK 599 (931)
T ss_pred hhheeeeccCCcCCCCCCcccceeEEEeeeeccccce
Confidence 999999999999999943 6799999999999986
No 20
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=3.7e-32 Score=324.03 Aligned_cols=114 Identities=20% Similarity=0.345 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhccCCCCCChHHHHHHHhccccccccCchhhhHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHhh
Q psy9748 122 LLFASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVHIASCIGNILSY 201 (1359)
Q Consensus 122 ~~~~~~a~~l~~~~~p~a~GsGIpeik~~l~g~~~~~~l~~~tl~~K~i~~~lav~sGls~GkEGP~vhiga~ig~~l~~ 201 (1359)
..++++...+..++.|...|+ .|+++.... +.++.+.+..|+++..+++++|+|+|||||.||+|+++++.++|
T Consensus 63 ~~~gGllvgll~~~~~~~~G~-~~~~~~~~~-----~~~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r 136 (414)
T PRK03655 63 LTLTGIAVGLVIRFSPGHAGP-DPATEPLIG-----APVPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGA 136 (414)
T ss_pred HHHHHHHHHHHHHHcCCCCCC-hHHHHHHhc-----CCCCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH
Confidence 344444444444556766666 576666532 25677889999999999999999999999999999999999999
Q ss_pred hcccCCCChhhHHHHHHhhHhhhhhhhcCCCccceeeeeeeccc
Q psy9748 202 LFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSF 245 (1359)
Q Consensus 202 ~~~~~~~~~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l~~ 245 (1359)
++. ++.++|+++.||+|||+|++||||++|++|++||+++
T Consensus 137 ~~~----~~~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~ 176 (414)
T PRK03655 137 RLL----PRVNRMDWTILASAGTIGALFGTPVAAALIFSQTLNG 176 (414)
T ss_pred Hhc----cCCChhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 882 2245777899999999999999999999999999744
No 21
>KOG0474|consensus
Probab=99.96 E-value=1.7e-30 Score=304.97 Aligned_cols=129 Identities=27% Similarity=0.325 Sum_probs=116.1
Q ss_pred eEEEeecccccccccccccchhhhhhcceeeeeeeccCCCCccccccccccCCccCccceeeecccccccchhhhhhhhc
Q psy9748 1202 DIFTFLGKQFEGGLQLTFKHILSLSSHGMIVVCFYLNSPPSVSSLVWPKVSLSNLTAMQTRMVVCTSNDLTLLLTFLTLF 1281 (1359)
Q Consensus 1202 ~~~t~~~~~p~g~f~~~~~~ips~~~g~~~g~~~~~~~p~~~~~~~~~~~~~~~i~pg~ya~vg~a~~~~~~~~a~~~g~ 1281 (1359)
+++|||+.||+|+| ||++.+|+..|+.+... -++..+++||.||+.||| |++||+
T Consensus 463 ~~~TfGi~vpsGlF------iP~iL~GAa~GRlvg~~-----------l~~~~~id~G~yAllGAA--------a~LGG~ 517 (762)
T KOG0474|consen 463 ACWTFGIAVPSGLF------IPVILTGAAYGRLVGML-----------LGSYTNIDPGLYALLGAA--------AFLGGV 517 (762)
T ss_pred HHHHhcccccccch------hHHHHhhHHHHHHHHHH-----------HHHhhccCchHHHHHhHH--------HHhCCe
Confidence 89999999999999 99999966666653221 122337889999999999 999999
Q ss_pred cccchhheehhhhhcCCcchHHHHHHHHHHHHHHHhhcCCCChhhHHHhhcCCCCCCCc-hhhcccccccccccCCC
Q psy9748 1282 GTRDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFLDSK-EEFASTALASDVMQPKL 1357 (1359)
Q Consensus 1282 t~~tiS~~vI~fElTg~~~~ilPlMia~~ia~~v~~~~~~~siYd~~i~~k~~P~l~~~-~~~~~~~~v~diM~~~~ 1357 (1359)
.|||||++||++|+| +..+++|+|++.|+||||+|.|+ ++|||.++++|++|||++. ++.|++++|+|+|.++|
T Consensus 518 mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~VGD~FN-egiYd~~i~LkgvP~Le~~pe~~mr~L~a~ev~~~pv 592 (762)
T KOG0474|consen 518 MRMTVSLCVILLELT-NNLLLLPIMLVLLIAKTVGDSFN-EGIYDIIIQLKGVPFLEWEPEPYMRNLTAGEVMSKPV 592 (762)
T ss_pred EEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHHHHhhhh-hhhHHHhhhccCCccccCCCchHhhhhhHhhhccCCe
Confidence 999999999999999 99999999999999999999999 9999999999999999999 56899999999999976
No 22
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.91 E-value=1.3e-24 Score=262.40 Aligned_cols=121 Identities=45% Similarity=0.613 Sum_probs=104.5
Q ss_pred eEEEeecccccccccccccchhhhhhcceeeeeeec-------cCCCCccccccccccCCccCccceeeecccccccchh
Q psy9748 1202 DIFTFLGKQFEGGLQLTFKHILSLSSHGMIVVCFYL-------NSPPSVSSLVWPKVSLSNLTAMQTRMVVCTSNDLTLL 1274 (1359)
Q Consensus 1202 ~~~t~~~~~p~g~f~~~~~~ips~~~g~~~g~~~~~-------~~p~~~~~~~~~~~~~~~i~pg~ya~vg~a~~~~~~~ 1274 (1359)
|.+|++...|.|.| .|++++|.++|.++.. ++|+.... .-|.....+++|+.||++|||
T Consensus 318 t~lt~gsG~~GG~f------~P~l~iGA~~G~~~g~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~alvGma------- 383 (445)
T cd03684 318 TIFTFGIKVPAGIF------VPSMAVGALFGRIVGILVEQLAYSYPDSIFF-ACCTAGPSCITPGLYAMVGAA------- 383 (445)
T ss_pred HHHHHcCCCCccee------HHHHHHHHHHhHHHHHHHHHHHhhCCccccc-ccccCCCCccCchHHHHHHHH-------
Confidence 99999999999999 9999998888876422 24544211 112233446789999999999
Q ss_pred hhhhhhccccchhheehhhhhcCCcchHHHHHHHHHHHHHHHhhcCCCChhhHHHhhcCCCCC
Q psy9748 1275 LTFLTLFGTRDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFL 1337 (1359)
Q Consensus 1275 ~a~~~g~t~~tiS~~vI~fElTg~~~~ilPlMia~~ia~~v~~~~~~~siYd~~i~~k~~P~l 1337 (1359)
|++++++|+|+|+++|++|+||++++++|+|+++++|++|++.++++|+||.+++.|++|||
T Consensus 384 -a~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~~vs~~~~~~siY~~~l~~~g~p~l 445 (445)
T cd03684 384 -AFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWVADAIGKEGIYDAHIHLNGYPFL 445 (445)
T ss_pred -HHhcchhccchhhhheeeeccCCcccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999989999999999999997
No 23
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.87 E-value=2e-23 Score=253.35 Aligned_cols=116 Identities=28% Similarity=0.364 Sum_probs=102.4
Q ss_pred eEEEeecccccccccccccchhhhhhcceeeeeeeccCCCCccccccccccCCccCccceeeecccccccchhhhhhhhc
Q psy9748 1202 DIFTFLGKQFEGGLQLTFKHILSLSSHGMIVVCFYLNSPPSVSSLVWPKVSLSNLTAMQTRMVVCTSNDLTLLLTFLTLF 1281 (1359)
Q Consensus 1202 ~~~t~~~~~p~g~f~~~~~~ips~~~g~~~g~~~~~~~p~~~~~~~~~~~~~~~i~pg~ya~vg~a~~~~~~~~a~~~g~ 1281 (1359)
|.+|+|...|.|.| .|++++|.++|.++....... .+..+++|+.||++||| |+++|+
T Consensus 347 t~lt~gsG~~GGif------~Psl~iGA~~G~~~g~~~~~~--------~~~~~~~~~~~aliGma--------a~lag~ 404 (466)
T cd03685 347 ACWTFGIAVPSGLF------IPMILIGAAYGRLVGILLGSY--------FGFTSIDPGLYALLGAA--------AFLGGV 404 (466)
T ss_pred HHHHhcCCCCcccc------HHHHHHHHHHHHHHHHHHHHH--------ccccCCCchHHHHHHHH--------HHHhHH
Confidence 99999999999999 999999888888743321100 01134679999999999 999999
Q ss_pred cccchhheehhhhhcCCcchHHHHHHHHHHHHHHHhhcCCCChhhHHHhhcCCCCCCCc
Q psy9748 1282 GTRDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFLDSK 1340 (1359)
Q Consensus 1282 t~~tiS~~vI~fElTg~~~~ilPlMia~~ia~~v~~~~~~~siYd~~i~~k~~P~l~~~ 1340 (1359)
+|+|+|+++|++|+||++++++|+|+++++|+++++.++ +|+||..++.|++|||++.
T Consensus 405 ~raPlt~iviv~ElTg~~~~l~pl~ia~~iA~~va~~~~-~siY~~~l~~~g~p~l~~~ 462 (466)
T cd03685 405 MRMTVSLTVILLELTNNLTYLPPIMLVLMIAKWVGDYFN-EGIYDIIIQLKGVPFLHNG 462 (466)
T ss_pred hhhhHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHhC-CCHHHHHHHhCCCccccCC
Confidence 999999999999999999999999999999999999998 8999999999999999875
No 24
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.87 E-value=5.1e-23 Score=246.92 Aligned_cols=106 Identities=24% Similarity=0.232 Sum_probs=94.6
Q ss_pred eEEEeecccccccccccccchhhhhhcceeeeee----eccCCCCccccccccccCCccCccceeeecccccccchhhhh
Q psy9748 1202 DIFTFLGKQFEGGLQLTFKHILSLSSHGMIVVCF----YLNSPPSVSSLVWPKVSLSNLTAMQTRMVVCTSNDLTLLLTF 1277 (1359)
Q Consensus 1202 ~~~t~~~~~p~g~f~~~~~~ips~~~g~~~g~~~----~~~~p~~~~~~~~~~~~~~~i~pg~ya~vg~a~~~~~~~~a~ 1277 (1359)
|.+|++..+|.|.| .|++++|.++|..+ ..++|++.+ ++.+..+++|+.||++||| |+
T Consensus 307 t~~t~~sg~pGG~f------~Psl~iGA~~G~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~alvGma--------a~ 368 (416)
T cd01036 307 SALAFGIAVPGGTF------IPSLVIGAAIGRLVGLLVHRIAVAGIG----AESATLWADPGVYALIGAA--------AF 368 (416)
T ss_pred HHHHhcCCCCcchh------HHHHHHHHHHHHHHHHHHHHHcccccc----ccccCCccChHHHHHHHHH--------HH
Confidence 99999999999999 99999977777763 334564433 4555667899999999999 99
Q ss_pred hhhccccchhheehhhhhcCCcchHHHHHHHHHHHHHHHhhcCCCChhh
Q psy9748 1278 LTLFGTRDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYD 1326 (1359)
Q Consensus 1278 ~~g~t~~tiS~~vI~fElTg~~~~ilPlMia~~ia~~v~~~~~~~siYd 1326 (1359)
++|++|+|+|++||++|+||++++++|+|+++++|+++++.++ +|+||
T Consensus 369 l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~-~siY~ 416 (416)
T cd01036 369 LGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFC-ESLYH 416 (416)
T ss_pred hhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHHhhC-CCCCC
Confidence 9999999999999999999999999999999999999999999 89998
No 25
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.82 E-value=2.5e-21 Score=232.95 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=103.9
Q ss_pred eEEEeecccccccccccccchhhhhhcceeeee----eeccCCCCccccccccccCCccCccceeeecccccccchhhhh
Q psy9748 1202 DIFTFLGKQFEGGLQLTFKHILSLSSHGMIVVC----FYLNSPPSVSSLVWPKVSLSNLTAMQTRMVVCTSNDLTLLLTF 1277 (1359)
Q Consensus 1202 ~~~t~~~~~p~g~f~~~~~~ips~~~g~~~g~~----~~~~~p~~~~~~~~~~~~~~~i~pg~ya~vg~a~~~~~~~~a~ 1277 (1359)
|.+|++...|.|.| .|++++|.++|.+ +..++|++. |......++|+.||++||| |+
T Consensus 306 t~~t~gsG~~GGif------~Psl~iGa~~G~~~g~~~~~~~p~~~-----~~~~~~~~~~~~~alvGma--------a~ 366 (426)
T cd03683 306 TALAITLPVPAGIF------MPVFVIGAALGRLVGEIMAVLFPEGI-----RGGISNPIGPGGYAVVGAA--------AF 366 (426)
T ss_pred HHHHHhCCCChhhh------HHHHHHHHHHHHHHHHHHHHHcCccc-----ccCCCCCcCchHHHHHHHH--------HH
Confidence 99999999999999 9999998888877 444556442 4445567789999999999 99
Q ss_pred hhhccccchhheehhhhhcCCcchHHHHHHHHHHHHHHHhhcCCCChhhHHHhhcCCCCCCC
Q psy9748 1278 LTLFGTRDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFLDS 1339 (1359)
Q Consensus 1278 ~~g~t~~tiS~~vI~fElTg~~~~ilPlMia~~ia~~v~~~~~~~siYd~~i~~k~~P~l~~ 1339 (1359)
++|++|+ +++++|++|+||++++++|+|+++++|+++++.++ +|+||..++.|++||||+
T Consensus 367 ~a~~~ra-~~t~vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~~-~~iY~~~l~~~~~p~l~~ 426 (426)
T cd03683 367 SGAVTHT-VSVAVIIFELTGQISHLLPVLIAVLISNAVAQFLQ-PSIYDSIIKIKKLPYLPD 426 (426)
T ss_pred HHHHHhH-HHHHheeeeecCCcchHHHHHHHHHHHHHHHHhhC-CCHHHHHHHhCCCCCCCC
Confidence 9999995 66778999999999999999999999999999998 799999999999999985
No 26
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.79 E-value=2.4e-20 Score=223.23 Aligned_cols=107 Identities=16% Similarity=0.243 Sum_probs=93.1
Q ss_pred eEEEeecccccccccccccchhhhhhcceeeeeeeccCCCCccccccccccCCccCccceeeecccccccchhhhhhhhc
Q psy9748 1202 DIFTFLGKQFEGGLQLTFKHILSLSSHGMIVVCFYLNSPPSVSSLVWPKVSLSNLTAMQTRMVVCTSNDLTLLLTFLTLF 1281 (1359)
Q Consensus 1202 ~~~t~~~~~p~g~f~~~~~~ips~~~g~~~g~~~~~~~p~~~~~~~~~~~~~~~i~pg~ya~vg~a~~~~~~~~a~~~g~ 1281 (1359)
|.+|++...|.|.| .|++++|.++|..+...++.. .+...++|+.||++||+ |+++++
T Consensus 296 t~lt~~~G~~GG~f------~Psl~iGa~~G~~~g~~~~~~--------~~~~~~~~~~~a~~G~a--------a~~a~~ 353 (402)
T cd01031 296 TMLSYGSGAPGGIF------APMLALGALLGLLFGTILVQL--------GPIPISAPATFAIAGMA--------AFFAAV 353 (402)
T ss_pred HHHHHhcCCchHHH------HHHHHHHHHHHHHHHHHHHHh--------cCcccccHHHHHHHHHH--------HHHHHH
Confidence 89999999999999 999999888887743322110 00235679999999999 999999
Q ss_pred cccchhheehhhhhcCCcchHHHHHHHHHHHHHHHhhcCCCChhhHHHh
Q psy9748 1282 GTRDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIM 1330 (1359)
Q Consensus 1282 t~~tiS~~vI~fElTg~~~~ilPlMia~~ia~~v~~~~~~~siYd~~i~ 1330 (1359)
+|+|++++++++|+||++++++|+|+++++|+++++.++++|+||..++
T Consensus 354 ~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~siY~~~l~ 402 (402)
T cd01031 354 VRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPIYEALLE 402 (402)
T ss_pred HhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChhHHHhC
Confidence 9999999999999999999999999999999999999988999999864
No 27
>PRK05277 chloride channel protein; Provisional
Probab=99.75 E-value=1.4e-18 Score=210.08 Aligned_cols=105 Identities=15% Similarity=0.216 Sum_probs=95.0
Q ss_pred eEEEeecccccccccccccchhhhhhcceeeeeee----ccCCCCccccccccccCCccCccceeeecccccccchhhhh
Q psy9748 1202 DIFTFLGKQFEGGLQLTFKHILSLSSHGMIVVCFY----LNSPPSVSSLVWPKVSLSNLTAMQTRMVVCTSNDLTLLLTF 1277 (1359)
Q Consensus 1202 ~~~t~~~~~p~g~f~~~~~~ips~~~g~~~g~~~~----~~~p~~~~~~~~~~~~~~~i~pg~ya~vg~a~~~~~~~~a~ 1277 (1359)
|++|+|...|.|.| .|++++|.++|..+. .++|. ..++|+.|+++||+ |+
T Consensus 309 t~ls~gsG~~GG~f------~Psl~iGa~~G~~~g~~~~~~~p~------------~~~~~~~~a~~G~a--------A~ 362 (438)
T PRK05277 309 TLLCFGSGAPGGIF------APMLALGTLLGLAFGMVAAALFPQ------------YHIEPGTFAIAGMG--------AL 362 (438)
T ss_pred HHHHHcCCCcHHHH------HHHHHHHHHHHHHHHHHHHHHcCc------------ccccHHHHHHHHHH--------HH
Confidence 89999999999999 999999888777643 33442 24579999999999 99
Q ss_pred hhhccccchhheehhhhhcCCcchHHHHHHHHHHHHHHHhhcCCCChhhHHHhhc
Q psy9748 1278 LTLFGTRDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLN 1332 (1359)
Q Consensus 1278 ~~g~t~~tiS~~vI~fElTg~~~~ilPlMia~~ia~~v~~~~~~~siYd~~i~~k 1332 (1359)
+++++|+|+|.+++++|+||++++++|+|+++++|+++++.++++++||..++..
T Consensus 363 la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~~~iy~~~l~~~ 417 (438)
T PRK05277 363 FAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGGKPIYSALLERT 417 (438)
T ss_pred HHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999876
No 28
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.71 E-value=4.7e-18 Score=212.18 Aligned_cols=127 Identities=19% Similarity=0.239 Sum_probs=111.4
Q ss_pred eEEEeecccccccccccccchhhhhhcceeeeeeec----cCCCCccccccccccCCccCccceeeecccccccchhhhh
Q psy9748 1202 DIFTFLGKQFEGGLQLTFKHILSLSSHGMIVVCFYL----NSPPSVSSLVWPKVSLSNLTAMQTRMVVCTSNDLTLLLTF 1277 (1359)
Q Consensus 1202 ~~~t~~~~~p~g~f~~~~~~ips~~~g~~~g~~~~~----~~p~~~~~~~~~~~~~~~i~pg~ya~vg~a~~~~~~~~a~ 1277 (1359)
|.+|+|.-.|.|.| .|++++|.++|..+.. .+|.. ...|+.|+++||| |+
T Consensus 327 t~~t~g~G~~GG~f------~P~l~iGa~~G~~~g~~~~~~~~~~------------~~~~~~~a~vGma--------a~ 380 (574)
T PRK01862 327 TAATAGSGAVGGVF------TPTLFVGAVVGSLFGLAMHALWPGH------------TSAPFAYAMVGMG--------AF 380 (574)
T ss_pred HHHHHccCCCccch------hhHHHHHHHHHHHHHHHHHHhCCCc------------ccchHHHHHHHHH--------HH
Confidence 99999999999999 9999998888877543 23322 2358899999999 99
Q ss_pred hhhccccchhheehhhhhcCCcchHHHHHHHHHHHHHHHhhcCCCChhhHHHhhcCCCCCCCchhhcccccccccccCCC
Q psy9748 1278 LTLFGTRDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFLDSKEEFASTALASDVMQPKL 1357 (1359)
Q Consensus 1278 ~~g~t~~tiS~~vI~fElTg~~~~ilPlMia~~ia~~v~~~~~~~siYd~~i~~k~~P~l~~~~~~~~~~~v~diM~~~~ 1357 (1359)
++|++|+|++.+++++|+||++++++|+|+++++|+++++.++++|+||..++.++.+ ...+.+++++|+|+|+++.
T Consensus 381 ~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~~iy~~~~~~~~~~---~~~~~L~~~~V~dim~~~~ 457 (574)
T PRK01862 381 LAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTSMYEITLRRHQDE---AERERLRTTQMRELIQPAQ 457 (574)
T ss_pred HHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhcccc---chhhHHhhCcHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999998753 2345788899999998864
No 29
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.70 E-value=1.6e-16 Score=190.33 Aligned_cols=202 Identities=11% Similarity=0.133 Sum_probs=157.9
Q ss_pred cccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCc
Q psy9748 813 ASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGD 892 (1359)
Q Consensus 813 l~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~ 892 (1359)
+.+.+|+|+|+|+.+ ++.++.+++++|+.+.+.+++|+++||+++ +.++++|+|+.+||...+..
T Consensus 188 l~~~~v~diMtpr~~---v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~-~~d~ivGiv~~kDll~~~~~----------- 252 (408)
T TIGR03520 188 FGNTDTKQVMRPRLD---IFALDIETSFSEIIPKIIENGYSRIPVYKE-TIDNITGVLYIKDLLPHLNK----------- 252 (408)
T ss_pred cCCCEeeeeCCchHh---EEEEECCCCHHHHHHHHHhCCCCEEEEEcC-CCCceEEEEEHHHHHhHhcc-----------
Confidence 467889999999865 678899999999999999999999999973 34789999999999854311
Q ss_pred cceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHh
Q psy9748 893 SIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQ 968 (1359)
Q Consensus 893 s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~ 968 (1359)
...+++++|++ |++|++++++.++++ .|+ +.++|+|++|.++||||.+|+++.+.
T Consensus 253 -------------------~~~~l~~~~~~-~~~Vpe~~~l~~ll~-~m~~~~~~~aiVvDE~G~~~GiVT~eDileeiv 311 (408)
T TIGR03520 253 -------------------KNFDWQSLLRE-PYFVPENKKLDDLLR-DFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIV 311 (408)
T ss_pred -------------------CCCCHHHHcCC-CeEeCCCCcHHHHHH-HHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence 12356778875 789999999999999 776 45788999889999999999999998
Q ss_pred hccCCCCCCCCCCccccccccccccEEecCCCCHHHHHHHHHHcCCCcCC-ccchhHHHHHHHHHHHHH---HhhccCCC
Q psy9748 969 NDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVVDMYKKRSISVTN-GQKEIFLMRFLWDRWETL---GNKLGIPD 1044 (1359)
Q Consensus 969 ~~~~~~~~~~~~~~~rv~~im~~~~~tV~~dtpLeel~~lm~~~gI~lp~-~~~~~tl~gli~eLl~~I---g~~~ni~~ 1044 (1359)
++..++.+.......+ .....+.+++++|++++.+.+.......|+ ++++.|++|++.+.++++ |+...+..
T Consensus 312 gei~de~d~~~~~i~~----~~~~~~~v~G~~~l~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~iP~~G~~~~~~~ 387 (408)
T TIGR03520 312 GDISDEFDDEDLIYSK----IDDNNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKKGEKITFEN 387 (408)
T ss_pred CCCCCcCCcCccceEE----eCCCeEEEEeccCHHHHHHHhCCCccccCCcCCCCccHHHHHHHHhCcCCCCCCEEEECC
Confidence 7665554322222222 234579999999999999987442211332 356789999999999998 88888888
Q ss_pred cccceecccc
Q psy9748 1045 CMKDVHKAHR 1054 (1359)
Q Consensus 1045 ~~~~I~k~~R 1054 (1359)
++++|.+..+
T Consensus 388 ~~f~V~~~~~ 397 (408)
T TIGR03520 388 FEFTIEAMDK 397 (408)
T ss_pred EEEEEEEccC
Confidence 8888877544
No 30
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.68 E-value=5.8e-16 Score=177.93 Aligned_cols=200 Identities=13% Similarity=0.236 Sum_probs=157.7
Q ss_pred cccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCc
Q psy9748 813 ASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGD 892 (1359)
Q Consensus 813 l~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~ 892 (1359)
+.+.+|+|+|+|+.+ ++.++++++++++.+.+.++++++|||+++ +.++++|+|+.+||+..+...
T Consensus 64 l~~~~V~diMtpr~~---i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~-~~d~iiGiv~~kDll~~~~~~---------- 129 (292)
T PRK15094 64 IADQRVRDIMIPRSQ---MITLKRNQTLDECLDVIIESAHSRFPVISE-DKDHIEGILMAKDLLPFMRSD---------- 129 (292)
T ss_pred cCCCEEeEEccchHH---EEEEeCCCCHHHHHHHHHhcCCcEEEEecC-CCCcEEEEEEHHHHHhHhhcc----------
Confidence 456789999999754 677899999999999999999999999972 236899999999998654210
Q ss_pred cceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHh
Q psy9748 893 SIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQ 968 (1359)
Q Consensus 893 s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~ 968 (1359)
....+++++|++ +++|++++++.++++ .|+ +.+||+|+.|.++|+||++|+++.+.
T Consensus 130 ------------------~~~~~l~~l~r~-~~~V~e~~~l~~~L~-~m~~~~~~~a~VvDe~G~viGiVTleDIle~iv 189 (292)
T PRK15094 130 ------------------AEAFSMDKVLRQ-AVVVPESKRVDRMLK-EFRSQRYHMAIVIDEFGGVSGLVTIEDILELIV 189 (292)
T ss_pred ------------------CCcCCHHHHcCC-CcCcCCCCcHHHHHH-HHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHh
Confidence 011346788876 558999999999999 776 55799999889999999999999998
Q ss_pred hccCCCCCCCC-CCccccccccccccEEecCCCCHHHHHHHHHHcCCCcCCccchhHHHHHHHHHHHHH---HhhccCCC
Q psy9748 969 NDTQPQPLPGA-PPILRLDKILDMAPITITDQTPMETVVDMYKKRSISVTNGQKEIFLMRFLWDRWETL---GNKLGIPD 1044 (1359)
Q Consensus 969 ~~~~~~~~~~~-~~~~rv~~im~~~~~tV~~dtpLeel~~lm~~~gI~lp~~~~~~tl~gli~eLl~~I---g~~~ni~~ 1044 (1359)
+...++..... ....+ .....+.+++.++++++.+.+ ++.+|+ +++.|++|++.+.++++ |..+.+..
T Consensus 190 Gei~de~d~~~~~~i~~----~~~~~~~v~G~~~l~dl~~~l---~~~l~~-~~~~Tl~G~i~~~l~~iP~~Gd~i~~~~ 261 (292)
T PRK15094 190 GEIEDEYDEEDDIDFRQ----LSRHTWTVRALASIEDFNEAF---GTHFSD-EEVDTIGGLVMQAFGHLPARGETIDIDG 261 (292)
T ss_pred CCCccccccccccccEE----eCCCeEEEEeccCHHHHHHHh---CCCCCC-CCCccHHHHHHHHhCcCCCCCCEEEECC
Confidence 87665544222 11222 234578999999999999876 556765 47889999999999998 88888888
Q ss_pred cccceecccc
Q psy9748 1045 CMKDVHKAHR 1054 (1359)
Q Consensus 1045 ~~~~I~k~~R 1054 (1359)
++++|.+...
T Consensus 262 ~~f~V~~~~~ 271 (292)
T PRK15094 262 YQFKVAMADS 271 (292)
T ss_pred EEEEEEEccC
Confidence 8888887543
No 31
>PRK11573 hypothetical protein; Provisional
Probab=99.64 E-value=2.5e-15 Score=180.25 Aligned_cols=201 Identities=11% Similarity=0.129 Sum_probs=158.2
Q ss_pred cccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCc
Q psy9748 813 ASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGD 892 (1359)
Q Consensus 813 l~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~ 892 (1359)
+.+.+|+|+|+|+.+ ++.++.+.+++|+.+.+.+++|+++||+++ +.+.++|+|+.+|++..+.+.+.
T Consensus 184 l~~~~v~eiMtPr~~---i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~-~~D~IiGiv~~kDll~~~~~~~~-------- 251 (413)
T PRK11573 184 LEKVTVDDIMVPRNE---IVGIDINDDWKSILRQLTHSPHGRIVLYRD-SLDDAISMLRVREAYRLMTEKKE-------- 251 (413)
T ss_pred cCCCChhhcCCccce---EEEEECCCCHHHHHHHHHhCCCceEEEEcC-CCCceEEEEEHHHHHHHhhccCc--------
Confidence 467889999999976 788899999999999999999999999973 45789999999999875421100
Q ss_pred cceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc---ce-eEEEcCCCcEEEEEeHHHHHHHHh
Q psy9748 893 SIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT---KQ-LLFPANAKRTLEGLRGDSIVRFVQ 968 (1359)
Q Consensus 893 s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~-LpVVdegGrLvGIITrkDILr~l~ 968 (1359)
....++.++++ +|..|++++++.++++ .|+ .| ..|+|+.|...|+||.+|+++.+.
T Consensus 252 ------------------~~~~~l~~~~r-~~~~Vpe~~~l~~lL~-~~~~~~~~~AiVvDEyG~~~GiVTleDilEeiv 311 (413)
T PRK11573 252 ------------------FTKENMLRAAD-EIYFVPEGTPLSTQLV-KFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV 311 (413)
T ss_pred ------------------CCHHHHHhhcc-CCeEeCCCCcHHHHHH-HHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHh
Confidence 01123445554 4788999999999999 777 33 578899999999999999999999
Q ss_pred hccCCCCCCCC-CCccccccccccccEEecCCCCHHHHHHHHHHcCCCcCCccchhHHHHHHHHHHHHH---HhhccCCC
Q psy9748 969 NDTQPQPLPGA-PPILRLDKILDMAPITITDQTPMETVVDMYKKRSISVTNGQKEIFLMRFLWDRWETL---GNKLGIPD 1044 (1359)
Q Consensus 969 ~~~~~~~~~~~-~~~~rv~~im~~~~~tV~~dtpLeel~~lm~~~gI~lp~~~~~~tl~gli~eLl~~I---g~~~ni~~ 1044 (1359)
++..++.+... ....+. ....+.+++.++++++.+.+ ++.+|+ ++++|++|++.+.++++ |+.+.+..
T Consensus 312 Gei~de~d~~~~~~i~~~----~~~~~~v~G~~~l~d~~~~l---~~~l~~-~~~~Tl~G~i~~~lg~iP~~Ge~~~~~~ 383 (413)
T PRK11573 312 GDFTTSMSPTLAEEVTPQ----NDGSVIIDGTANVREINKAF---NWHLPE-DDARTVNGVILEALEEIPVAGTRVRIGE 383 (413)
T ss_pred CCCCcccCcccccceEEe----cCCEEEEEeeeEHHHHHHHh---CCCCCC-CCCeeHHHHHHHHhCcCCCCCCEEEECC
Confidence 87766654321 122222 23579999999999999976 566775 47899999999999998 88888888
Q ss_pred cccceeccc
Q psy9748 1045 CMKDVHKAH 1053 (1359)
Q Consensus 1045 ~~~~I~k~~ 1053 (1359)
++++|.+..
T Consensus 384 ~~f~V~~~~ 392 (413)
T PRK11573 384 YDIDILDVQ 392 (413)
T ss_pred EEEEEEEec
Confidence 888877743
No 32
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.59 E-value=2.7e-14 Score=172.56 Aligned_cols=202 Identities=13% Similarity=0.186 Sum_probs=159.7
Q ss_pred cccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCc
Q psy9748 813 ASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGD 892 (1359)
Q Consensus 813 l~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~ 892 (1359)
+.+.+|+++|+|+.+ ++.++.+.+++++.+.+.+++|+++||++ ++.+.++|+|+.+||+....+...
T Consensus 203 l~~~~v~eiMtPR~~---i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~~D~iiGiv~~Kdll~~~~~~~~-------- 270 (429)
T COG1253 203 LDDRTVREIMTPRTD---IVALDLTDTVEELIELILESGHSRIPVYD-GDLDNIIGIVHVKDLLRALLDGQS-------- 270 (429)
T ss_pred cCCcEeeeEeeeccc---EEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CCCCcEEEEEEHHHHHHHHhcCcc--------
Confidence 467889999999976 67788899999999999999999999998 677899999999999988643210
Q ss_pred cceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHh
Q psy9748 893 SIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQ 968 (1359)
Q Consensus 893 s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~ 968 (1359)
.......+. +|+.|++++++.++++ .|| +...|+|+.|.+.|+||.+|+++.+.
T Consensus 271 --------------------~~~~~~~~~-~~~~Vpet~~~~~lL~-~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIv 328 (429)
T COG1253 271 --------------------DLDLRVLVR-PPLFVPETLSLSDLLE-EFREERTHMAIVVDEYGGVEGLVTLEDIIEEIV 328 (429)
T ss_pred --------------------ccchhhccc-CCeEecCCCcHHHHHH-HHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHh
Confidence 011222233 6888999999999999 888 34688999999999999999999999
Q ss_pred hccCCCCCCCCCCccccccccccccEEecCCCCHHHHHHHHHHcCCCcCCccchhHHHHHHHHHHHHH---HhhccCCCc
Q psy9748 969 NDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVVDMYKKRSISVTNGQKEIFLMRFLWDRWETL---GNKLGIPDC 1045 (1359)
Q Consensus 969 ~~~~~~~~~~~~~~~rv~~im~~~~~tV~~dtpLeel~~lm~~~gI~lp~~~~~~tl~gli~eLl~~I---g~~~ni~~~ 1045 (1359)
++..++.+....+. .-+..... +.+++.++++++.+.+. ++.+++.+++|++|++.+.++++ ++....+++
T Consensus 329 Gei~de~d~~~~~~--~~~~~~~~-~~v~G~~~l~e~~~~l~---~~~~~~~~~~Ti~G~v~~~lg~iP~~g~~~~~~~~ 402 (429)
T COG1253 329 GEIPDEHDEDEEED--IIQRDDDG-WLVDGRVPLEELEELLG---IDLDEEEDYDTIAGLVLSLLGRIPKVGESVVIGGL 402 (429)
T ss_pred CCCcCccccccccc--ceEecCCc-EEEeccccHHHHHHHhC---CCCcccCCcccHHHHHHHHhCcCCCCCCEEEEcCC
Confidence 87776665422211 11223334 88999999999998754 44566668999999999999998 788889998
Q ss_pred ccceecccc
Q psy9748 1046 MKDVHKAHR 1054 (1359)
Q Consensus 1046 ~~~I~k~~R 1054 (1359)
+++|.++..
T Consensus 403 ~~~V~~~~~ 411 (429)
T COG1253 403 RFEVLDMDG 411 (429)
T ss_pred eEEEEEccC
Confidence 887777543
No 33
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.56 E-value=7.2e-16 Score=183.68 Aligned_cols=101 Identities=16% Similarity=0.088 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhhcCCcccceeehHHHHHHHHHhHHHHHHhHHhhhhhhhhhhhccCCccccCHHHHHHHHhhccccceec
Q psy9748 673 TLVLKLVLTVFTFGIKVPCGRLYLALFEQNKQGTYLSFYFIYFSVSLVVIMFELTGGVRYIVPLMAAAMASKWHKKLKTL 752 (1359)
Q Consensus 673 ~~v~K~~lt~~T~G~g~pgGif~PSL~iGA~~Gr~~g~~~~~~~~~~~~~~~~c~~~~~~i~pg~yAaaa~~a~l~gvtr 752 (1359)
.++.|++.+++|.|+|.|+|...|++.+||++|..++..++.. ..+.-.+.++|++|.++++.+
T Consensus 84 ~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~~----------------~~~~~~l~~~G~aaglaa~f~ 147 (383)
T cd00400 84 VALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRLS----------------RNDRRILVACGAAAGIAAAFN 147 (383)
T ss_pred HHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCCC----------------HHHHHHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999999999999999866421 123445667777777999999
Q ss_pred hhHHHHHHHHHhcCCcc---hHHHHhHHHHHHHHHHhhcc
Q psy9748 753 FRLSLVVIMFELTGGVR---YIVPLMAAAMASKWVGDALG 789 (1359)
Q Consensus 753 ~pls~vvi~~ElTG~~~---~ilP~miav~is~~v~~~~~ 789 (1359)
+|++.+++.+|.++... .+.|.++++.+|+.+++.+.
T Consensus 148 aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~ 187 (383)
T cd00400 148 APLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLF 187 (383)
T ss_pred ChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999998665 79999999999999998764
No 34
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.54 E-value=2.5e-15 Score=180.79 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=94.3
Q ss_pred eEEEeecccccccccccccchhhhhhcceeeeeeeccCCCCccccccccccCCccCccceeeecccccccchhhhhhhhc
Q psy9748 1202 DIFTFLGKQFEGGLQLTFKHILSLSSHGMIVVCFYLNSPPSVSSLVWPKVSLSNLTAMQTRMVVCTSNDLTLLLTFLTLF 1281 (1359)
Q Consensus 1202 ~~~t~~~~~p~g~f~~~~~~ips~~~g~~~g~~~~~~~p~~~~~~~~~~~~~~~i~pg~ya~vg~a~~~~~~~~a~~~g~ 1281 (1359)
|.+|+|.-.|.|.| .|++++|.++|..+...+..-. + .....|+.||++||+ |+++++
T Consensus 309 t~lt~gsG~~GG~f------~P~l~iGa~~G~~~g~~~~~~~-----~---~~~~~~~~~a~vGma--------A~laa~ 366 (418)
T PRK01610 309 VLASSGSGAPGGVF------TPTLFVGLAIGMLYGRSLGLWL-----P---DGEEITLLLGLTGMA--------TLLAAT 366 (418)
T ss_pred HHHHHhcCCCchhh------HHHHHHHHHHHHHHHHHHHHhC-----C---CcccchHHHHHHHHH--------HHHHHH
Confidence 99999999999999 9999999988887543321000 0 112347899999999 999999
Q ss_pred cccchhheehhhhhcCCcchHHHHHHHHHHHHHHHhhcCCCChhhHHHhhc
Q psy9748 1282 GTRDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLN 1332 (1359)
Q Consensus 1282 t~~tiS~~vI~fElTg~~~~ilPlMia~~ia~~v~~~~~~~siYd~~i~~k 1332 (1359)
+|+|++.+++++|+||++++++|+|+++++|+++++.+.++|+||.++..+
T Consensus 367 ~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~~~~~~siy~~~~~~~ 417 (418)
T PRK01610 367 THAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLRRDSIYRQHTAEH 417 (418)
T ss_pred HccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCCchHHHHhcc
Confidence 999999999999999999999999999999999999999999999998765
No 35
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.50 E-value=1.4e-15 Score=179.45 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=76.5
Q ss_pred eEEEeecccccccccccccchhhhhhcceeeeeeeccCCCCccccccccccCCccCccceeeecccccccchhhhhhhhc
Q psy9748 1202 DIFTFLGKQFEGGLQLTFKHILSLSSHGMIVVCFYLNSPPSVSSLVWPKVSLSNLTAMQTRMVVCTSNDLTLLLTFLTLF 1281 (1359)
Q Consensus 1202 ~~~t~~~~~p~g~f~~~~~~ips~~~g~~~g~~~~~~~p~~~~~~~~~~~~~~~i~pg~ya~vg~a~~~~~~~~a~~~g~ 1281 (1359)
|.+|++...|.|.| +|++++|.++|..+...++... + .....+|+.|+++||+ |+++++
T Consensus 260 t~lt~~~G~~GG~f------~Psl~iGa~~G~~~~~~~~~~~-----~--~~~~~~~~~~al~G~~--------a~~~a~ 318 (355)
T PF00654_consen 260 TALTLGSGAPGGIF------FPSLFIGAALGRLFGALLGSFF-----P--GISSVDPGVYALVGMA--------AFLAAV 318 (355)
T ss_dssp HHHHHHTT-BSBSH------HHHHHHHHHHHHHHHHHHHHH------G--GG-T-SHHHHHHHHTT--------HHHHHH
T ss_pred HHHhcCccCCCCEE------ccHHHHHHHHHHHHHHHHHhhC-----C--CcCCCchHHHHHHHHH--------HHHHHH
Confidence 99999999999999 9999998888877543332110 0 1122379999999999 999999
Q ss_pred cccchhheehhhhhcCCcchHHHHHHHHHHHHHHHhh
Q psy9748 1282 GTRDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDA 1318 (1359)
Q Consensus 1282 t~~tiS~~vI~fElTg~~~~ilPlMia~~ia~~v~~~ 1318 (1359)
+|+|+++++|++|+|||+++++|+|+++++|+.+++.
T Consensus 319 ~~~Plt~~vl~~Eltg~~~~~~p~lia~~~a~~v~~~ 355 (355)
T PF00654_consen 319 TRAPLTAIVLVLELTGDFQLLLPLLIAVAVAYLVARW 355 (355)
T ss_dssp CS-HHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHH-
T ss_pred HHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999874
No 36
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.46 E-value=3.7e-13 Score=153.38 Aligned_cols=199 Identities=14% Similarity=0.167 Sum_probs=157.2
Q ss_pred cccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCc
Q psy9748 813 ASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGD 892 (1359)
Q Consensus 813 l~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~ 892 (1359)
+.+++|+|||+||.+ +..++.+++.+++.+.+.++.|+++|+.+++- +.++|+++.+|+.+++.+...
T Consensus 197 Le~~tV~DIMvpR~~---i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~-DnIiGvlh~r~llr~l~e~~~-------- 264 (423)
T COG4536 197 LENLTVSDIMVPRNE---IIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL-DNIIGVLHVRDLLRLLNEKNE-------- 264 (423)
T ss_pred cccceeeeeeccccc---eeeecCCCCHHHHHHHHhhCCCCceeeecCCh-hHhhhhhhHHHHHHHhhccCc--------
Confidence 467889999999976 67889999999999999999999999998544 459999999999999854321
Q ss_pred cceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc---ce-eEEEcCCCcEEEEEeHHHHHHHHh
Q psy9748 893 SIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT---KQ-LLFPANAKRTLEGLRGDSIVRFVQ 968 (1359)
Q Consensus 893 s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~-LpVVdegGrLvGIITrkDILr~l~ 968 (1359)
....++....+ .|..|++.+|+.+-+. -|+ +| .+|+||+|.+.|+||.+|+++.+.
T Consensus 265 ------------------~~k~d~~~~a~-epyFVPe~Tpl~~QL~-~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIV 324 (423)
T COG4536 265 ------------------FTKEDILRAAD-EPYFVPEGTPLSDQLV-AFQRNKKHIALVVDEYGDIQGLVTLEDILEEIV 324 (423)
T ss_pred ------------------ccHhHHHHHhc-CCeecCCCCcHHHHHH-HHHHhcceEEEEEeccCcEEeeeeHHHHHHHHh
Confidence 11234444444 4788999999999999 777 34 599999999999999999999999
Q ss_pred hccCCCCCCCCCCccccccccccccEEecCCCCHHHHHHHHHHcCCCcCCccchhHHHHHHHHHHHHH---HhhccCCCc
Q psy9748 969 NDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVVDMYKKRSISVTNGQKEIFLMRFLWDRWETL---GNKLGIPDC 1045 (1359)
Q Consensus 969 ~~~~~~~~~~~~~~~rv~~im~~~~~tV~~dtpLeel~~lm~~~gI~lp~~~~~~tl~gli~eLl~~I---g~~~ni~~~ 1045 (1359)
++..++.........+..+ ..+.+++..++.++.+. .+..+|+ ++..|++|++.|-++.| ++.+.+..+
T Consensus 325 Gdftde~d~~~~ev~~q~d----gs~iidGs~~iRdlNr~---l~W~Lp~-e~a~TinGLvle~le~IP~~~~~~~i~~~ 396 (423)
T COG4536 325 GDFTDEHDTLAKEVIPQSD----GSFIIDGSANVRDLNRA---LDWNLPD-EDARTINGLVLEELEEIPEEGQAVRIGGY 396 (423)
T ss_pred ccccccCcccchhhcccCC----CcEEEeCCCcHHHHHHh---cCCCCCC-CcchhHHHHHHHHHHhCCCCCeEEEEcCE
Confidence 8877555444444333333 47889999999998875 4667885 45578999999999998 777777777
Q ss_pred ccceec
Q psy9748 1046 MKDVHK 1051 (1359)
Q Consensus 1046 ~~~I~k 1051 (1359)
+++|.|
T Consensus 397 ~~~Il~ 402 (423)
T COG4536 397 RIDILK 402 (423)
T ss_pred EEEEEe
Confidence 777666
No 37
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.44 E-value=4.8e-14 Score=170.69 Aligned_cols=110 Identities=22% Similarity=0.315 Sum_probs=99.5
Q ss_pred eEEEeecccccccccccccchhhhhhcceeeeeeec----cCCCCccccccccccCCccCccceeeecccccccchhhhh
Q psy9748 1202 DIFTFLGKQFEGGLQLTFKHILSLSSHGMIVVCFYL----NSPPSVSSLVWPKVSLSNLTAMQTRMVVCTSNDLTLLLTF 1277 (1359)
Q Consensus 1202 ~~~t~~~~~p~g~f~~~~~~ips~~~g~~~g~~~~~----~~p~~~~~~~~~~~~~~~i~pg~ya~vg~a~~~~~~~~a~ 1277 (1359)
|.+++|.-.|.|.| .|++++|.++|..+.. ++|+. ...|+.|+++||+ ++
T Consensus 323 t~~s~gSG~~GGif------~Psl~iGa~lG~~~g~~~~~~~~~~------------~~~~~~~al~Gm~--------a~ 376 (443)
T COG0038 323 TLLSYGSGAPGGIF------APSLFIGAALGLAFGALLGLLFPPS------------ILEPGLFALLGMA--------AF 376 (443)
T ss_pred HHHHHhcCCCccee------hHHHHHHHHHHHHHHHHHHhhcCcc------------ccchHHHHHHHHH--------HH
Confidence 88999999999999 9999999888887543 23322 4568999999999 99
Q ss_pred hhhccccchhheehhhhhcCCcchHHHHHHHHHHHHHHHhhcCCCChhhHHHhhcCCCCC
Q psy9748 1278 LTLFGTRDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFL 1337 (1359)
Q Consensus 1278 ~~g~t~~tiS~~vI~fElTg~~~~ilPlMia~~ia~~v~~~~~~~siYd~~i~~k~~P~l 1337 (1359)
+++++|+|++.+++++||||+++.++|+|+++++|+.+++.+.+.++|+..++.++.|..
T Consensus 377 la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (443)
T COG0038 377 LAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGGRPIYTQLLARRGAPIL 436 (443)
T ss_pred HHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcCchhh
Confidence 999999999999999999999999999999999999999999999999999999999833
No 38
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.36 E-value=8.2e-13 Score=157.37 Aligned_cols=92 Identities=11% Similarity=0.057 Sum_probs=82.9
Q ss_pred eEEEeecccccccccccccchhhhhhcceeeeeeeccCCCCccccccccccCCccCccceeeecccccccchhhhhhhhc
Q psy9748 1202 DIFTFLGKQFEGGLQLTFKHILSLSSHGMIVVCFYLNSPPSVSSLVWPKVSLSNLTAMQTRMVVCTSNDLTLLLTFLTLF 1281 (1359)
Q Consensus 1202 ~~~t~~~~~p~g~f~~~~~~ips~~~g~~~g~~~~~~~p~~~~~~~~~~~~~~~i~pg~ya~vg~a~~~~~~~~a~~~g~ 1281 (1359)
|.+|+|...|.|.| .|++++|.++|..+..+++ ..|+.|+++||+ |+++++
T Consensus 287 t~~s~g~G~~GG~f------~P~l~iGa~~G~~~~~~~~---------------~~~~~~~~~Gma--------a~laa~ 337 (378)
T cd03682 287 TVITLGAGFKGGEV------TPLFFIGATLGNALAPILG---------------LPVSLLAALGFV--------AVFAGA 337 (378)
T ss_pred HHHHHhcCCCCcee------chHHHHHHHHHHHHHHHHC---------------CCHHHHHHHHHH--------HHHHHH
Confidence 89999999999999 9999999999988765443 237799999999 999999
Q ss_pred cccchhheehhhhhcCCcchHHHHHHHHHHHHHHHhhcCCCChhh
Q psy9748 1282 GTRDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYD 1326 (1359)
Q Consensus 1282 t~~tiS~~vI~fElTg~~~~ilPlMia~~ia~~v~~~~~~~siYd 1326 (1359)
+|+|++.+++++|+|| .++++|+|+++.+|+.+++ ++|+|+
T Consensus 338 ~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~---~~~iy~ 378 (378)
T cd03682 338 TNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG---HTGIYG 378 (378)
T ss_pred hcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC---CCCCCC
Confidence 9999999999999999 6899999999999999974 688985
No 39
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.33 E-value=5.2e-12 Score=137.88 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=105.2
Q ss_pred cccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCc
Q psy9748 813 ASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGD 892 (1359)
Q Consensus 813 l~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~ 892 (1359)
..+.+|+++|+++ .+++.+++|++|+..++.++++.|-||+| +++++|+++..|+..++.+.
T Consensus 169 iPk~~V~~~~s~~-----~i~v~~d~tl~eaak~f~~~~i~GaPVvd---~dk~vGiit~~dI~~aia~g---------- 230 (294)
T COG2524 169 IPKEKVKNLMSKK-----LITVRPDDTLREAAKLFYEKGIRGAPVVD---DDKIVGIITLSDIAKAIANG---------- 230 (294)
T ss_pred cCcchhhhhccCC-----ceEecCCccHHHHHHHHHHcCccCCceec---CCceEEEEEHHHHHHHHHcC----------
Confidence 3456799999986 46789999999999999999999999997 45999999999999998542
Q ss_pred cceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHh
Q psy9748 893 SIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQ 968 (1359)
Q Consensus 893 s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~ 968 (1359)
.....++++|.+.++++++++.+.+|++ +|. .+++|+|..|+.+|||||.|+++.+.
T Consensus 231 ------------------~~~~kV~~~M~k~vitI~eDe~i~dAir-~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 231 ------------------NLDAKVSDYMRKNVITINEDEDIYDAIR-LMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred ------------------CccccHHHHhccCCceEcCchhHHHHHH-HHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 2246799999999999999999999999 555 78999997789999999999999876
Q ss_pred h
Q psy9748 969 N 969 (1359)
Q Consensus 969 ~ 969 (1359)
.
T Consensus 292 ~ 292 (294)
T COG2524 292 G 292 (294)
T ss_pred c
Confidence 4
No 40
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.32 E-value=2.9e-12 Score=138.01 Aligned_cols=198 Identities=14% Similarity=0.218 Sum_probs=159.3
Q ss_pred ccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCcc
Q psy9748 814 STALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDS 893 (1359)
Q Consensus 814 ~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s 893 (1359)
.++.|+|+|.|+.+ .+.+..+.++++....+.++.|++|||+.+ +.+.+.|++..+||+..+...
T Consensus 65 adl~vrDiMIPRSQ---M~~l~~~~~l~~~l~~iiesaHSRfPVi~e-dkD~v~GIL~AKDLL~~~~~~----------- 129 (293)
T COG4535 65 ADLRVRDIMIPRSQ---MITLKRNQTLDECLDVIIESAHSRFPVISE-DKDHVEGILLAKDLLPFMRSD----------- 129 (293)
T ss_pred HHhhHhhhcccHHH---heeccccCCHHHHHHHHHHhccccCCcccC-CchhhhhhhhHHHHHHHhcCC-----------
Confidence 56789999999976 678899999999999999999999999963 567899999999999876321
Q ss_pred ceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhh
Q psy9748 894 IVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQN 969 (1359)
Q Consensus 894 ~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~ 969 (1359)
....++++++++. +.|++.-.+...++ -|| +...|+|+.|.+.|+||-+|+++.+.+
T Consensus 130 -----------------~~~F~i~~lLRPa-v~VPESKrvd~lLk-eFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 130 -----------------AEPFDIKELLRPA-VVVPESKRVDRLLK-EFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred -----------------cccccHHHhcccc-eecccchhHHHHHH-HHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhc
Confidence 1235777887774 45899999999998 999 346899999999999999999999999
Q ss_pred ccCCCCCCCCCCccccccccccccEEecCCCCHHHHHHHHHHcCCCcCCccchhHHHHHHHHHHHHH---HhhccCCCcc
Q psy9748 970 DTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVVDMYKKRSISVTNGQKEIFLMRFLWDRWETL---GNKLGIPDCM 1046 (1359)
Q Consensus 970 ~~~~~~~~~~~~~~rv~~im~~~~~tV~~dtpLeel~~lm~~~gI~lp~~~~~~tl~gli~eLl~~I---g~~~ni~~~~ 1046 (1359)
+.+++...++... -.......+.|..-|++++..+.+..+ .+ +++.+|++|++..-++.+ |+...+....
T Consensus 191 dIEDE~Deee~~d---I~~ls~~~~~VrALT~IedFNe~F~t~---Fs-DeevDTIGGLVm~afGhLP~RGE~i~i~~~~ 263 (293)
T COG4535 191 DIEDEYDEEEDAD---IRQLSRHTWRVRALTEIEDFNEAFGTH---FS-DEEVDTIGGLVMQAFGHLPARGEKIDIGGYQ 263 (293)
T ss_pred ccccccchhhhhh---hHhhcCCceEEEecccHHHHHHHhcCC---CC-hhhhhhhhHHHHHHhccCCCCCCEEEEcceE
Confidence 8887776654321 122345578999999999998887653 44 367789999999999998 7777777776
Q ss_pred cceecc
Q psy9748 1047 KDVHKA 1052 (1359)
Q Consensus 1047 ~~I~k~ 1052 (1359)
|+|-+|
T Consensus 264 FkV~~A 269 (293)
T COG4535 264 FKVARA 269 (293)
T ss_pred EEEeec
Confidence 776653
No 41
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.31 E-value=3e-12 Score=144.41 Aligned_cols=123 Identities=24% Similarity=0.329 Sum_probs=105.1
Q ss_pred cccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccc
Q psy9748 815 TALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSI 894 (1359)
Q Consensus 815 ~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~ 894 (1359)
-.+|.|+|+|-.+ ...+.+++++++..++..+++|++|||+| +..+++|+|+.+|....
T Consensus 187 I~~Vedi~~P~~~---~~yL~~~d~v~d~~~l~~kt~~sRfPVvn--~~~kvvGvVt~rDv~~~---------------- 245 (432)
T COG4109 187 IITVEDIMTPLED---TSYLRETDTVEDWLDLVEKTGHSRFPVVN--RSMKVVGVVTMRDVLDK---------------- 245 (432)
T ss_pred eeeHHHhcccccc---ceeccccccHHHHHHHHHHcCCCccceec--ccceEEEEEEehhhhcC----------------
Confidence 3579999998654 45678999999999999999999999998 78899999999998643
Q ss_pred eecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhcc
Q psy9748 895 VRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDT 971 (1359)
Q Consensus 895 v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~ 971 (1359)
.+..++..+|++.|++|.+.+++..+.+.|.- ..+||+|++++++|+|||.|+++.+....
T Consensus 246 ----------------~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q 309 (432)
T COG4109 246 ----------------KPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQ 309 (432)
T ss_pred ----------------CCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhc
Confidence 23467889999999999999999999994433 77999999999999999999999987655
Q ss_pred CCC
Q psy9748 972 QPQ 974 (1359)
Q Consensus 972 ~~~ 974 (1359)
++.
T Consensus 310 ~qp 312 (432)
T COG4109 310 RQP 312 (432)
T ss_pred cCC
Confidence 443
No 42
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.28 E-value=6.2e-11 Score=131.25 Aligned_cols=128 Identities=19% Similarity=0.252 Sum_probs=106.0
Q ss_pred cccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCc
Q psy9748 813 ASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGD 892 (1359)
Q Consensus 813 l~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~ 892 (1359)
+..++..|||+++ ++.+.++++++++.++|.+|+++.+||+| ++.+++|+|+++||.+...... .
T Consensus 242 ~~~LtcadIMSrd-----Vvtv~~~ts~dhA~~ll~~H~ikaLPV~d--~~~rl~GiVt~~dl~~~a~~~p--------~ 306 (382)
T COG3448 242 MGELTCADIMSRD-----VVTVSTDTSIDHARKLLQEHRIKALPVLD--EHRRLVGIVTQRDLLKHARPSP--------F 306 (382)
T ss_pred hccccHHHhcCcc-----ceecCCcCChHHHHHHHHHcCcccccccc--cccceeeeeeHHHHhhccCcch--------H
Confidence 4567899999998 67889999999999999999999999998 6789999999999986421100 0
Q ss_pred cceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHh
Q psy9748 893 SIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQ 968 (1359)
Q Consensus 893 s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~ 968 (1359)
...+| ..+-.++.+|++...|+.+++|..+.+- +|. +++||+|+.|+++||||..|++..+.
T Consensus 307 qrlr~-------------~~~~~vk~imt~~v~tv~pdtpa~~lvp-~lad~g~H~lpvld~~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 307 QRLRF-------------LRPPTVKGIMTTPVVTVRPDTPAVELVP-RLADEGLHALPVLDAAGKLVGIVSQTDLIAALY 372 (382)
T ss_pred HHhhc-------------cCCCcccccccCcceeecCCCcHHHHHH-HhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence 00111 1234688999999999999999999999 777 67999999999999999999998775
Q ss_pred h
Q psy9748 969 N 969 (1359)
Q Consensus 969 ~ 969 (1359)
.
T Consensus 373 r 373 (382)
T COG3448 373 R 373 (382)
T ss_pred H
Confidence 4
No 43
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.24 E-value=3.2e-11 Score=140.96 Aligned_cols=145 Identities=10% Similarity=0.039 Sum_probs=112.1
Q ss_pred CCCcchhhhhccCCCC---Ccchh-hhc---ccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCC
Q psy9748 790 KQGIYDAHIMLNAYPF---LDSKE-EFA---STALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRE 862 (1359)
Q Consensus 790 ~~sIYd~~I~lng~Pf---Ld~k~-e~l---~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~ 862 (1359)
.+++|...+..+|.-. ...++ ..+ ..++|+|+|++.++ +..+++++|+.++.++|.+++++.+||++ +
T Consensus 169 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~---~~~v~~~~sl~~a~~~~~~~~~~~~vVvd--~ 243 (326)
T PRK10892 169 GDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDE---IPHVSKTASLRDALLEITRKNLGMTVICD--D 243 (326)
T ss_pred HHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCC---CeEECCCCCHHHHHHHHHhcCCCeEEEEc--C
Confidence 3567777777777776 43333 345 77889999997211 45678999999999999888887777776 6
Q ss_pred CCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc
Q psy9748 863 SQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT 942 (1359)
Q Consensus 863 d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr 942 (1359)
+++++|+|+.+|+..++.... .....+++++|++.++++++++++.++++.|.+
T Consensus 244 ~g~lvGivt~~Dl~~~~~~~~--------------------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~ 297 (326)
T PRK10892 244 NMKIEGIFTDGDLRRVFDMGI--------------------------DLRQASIADVMTPGGIRVRPGILAVDALNLMQS 297 (326)
T ss_pred CCcEEEEEecHHHHHHHhcCC--------------------------CcccCCHHHhcCCCCEEECCCCCHHHHHHHHHH
Confidence 789999999999987542110 012246889999999999999999999995554
Q ss_pred ---ceeEEEcCCCcEEEEEeHHHHHHH
Q psy9748 943 ---KQLLFPANAKRTLEGLRGDSIVRF 966 (1359)
Q Consensus 943 ---R~LpVVdegGrLvGIITrkDILr~ 966 (1359)
+++||+|++ +++|+||++|+++.
T Consensus 298 ~~~~~lpVv~~~-~lvGiit~~dil~~ 323 (326)
T PRK10892 298 RHITSVLVADGD-HLLGVLHMHDLLRA 323 (326)
T ss_pred CCCcEEEEeeCC-EEEEEEEhHHhHhc
Confidence 789999865 99999999999874
No 44
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.22 E-value=4.4e-11 Score=139.32 Aligned_cols=144 Identities=10% Similarity=0.006 Sum_probs=113.1
Q ss_pred CCcchhhhhccCCCC---Ccchh-hhcc---cccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCC
Q psy9748 791 QGIYDAHIMLNAYPF---LDSKE-EFAS---TALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRES 863 (1359)
Q Consensus 791 ~sIYd~~I~lng~Pf---Ld~k~-e~l~---~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d 863 (1359)
+++|...+..++.-. ...++ ..+. ..+|+|+|+++.+ ++.+++++++.++.+.|.+++.+.+||+| ++
T Consensus 165 dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~~~~---~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd--~~ 239 (321)
T PRK11543 165 DALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDA---IPQVALTASVMDAMLELSRTGLGLVAVCD--AQ 239 (321)
T ss_pred HHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhccCCC---CcEeCCCCCHHHHHHHHHHcCCCEEEEEc--CC
Confidence 466777777666555 33332 3566 7899999998621 34578999999999999988889999998 67
Q ss_pred CeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc-
Q psy9748 864 QYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT- 942 (1359)
Q Consensus 864 ~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr- 942 (1359)
++++|+|+.+|+...+.... .....++++|++.+.++.+++++.++++.|.+
T Consensus 240 g~~iG~vt~~dl~~~~~~~~---------------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~ 292 (321)
T PRK11543 240 QQVQGVFTDGDLRRWLVGGG---------------------------ALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKR 292 (321)
T ss_pred CcEEEEecHHHHHHHHhCCC---------------------------CcCCcHHHhcCCCCEEECCCCCHHHHHHHHHHc
Confidence 89999999999987652210 11235789999999999999999999994444
Q ss_pred --ceeEEEcCCCcEEEEEeHHHHHHH
Q psy9748 943 --KQLLFPANAKRTLEGLRGDSIVRF 966 (1359)
Q Consensus 943 --R~LpVVdegGrLvGIITrkDILr~ 966 (1359)
+++||+|++|+++|+||++|+++.
T Consensus 293 ~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 293 KITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred CCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 679999987799999999999863
No 45
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.17 E-value=1.1e-10 Score=119.54 Aligned_cols=121 Identities=15% Similarity=0.278 Sum_probs=103.0
Q ss_pred ccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCcc
Q psy9748 814 STALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDS 893 (1359)
Q Consensus 814 ~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s 893 (1359)
...++.++|+++ ++.+.+++++.++.++|++++++.+||++ +++++|-|+.+++..++.+..+
T Consensus 63 ~~ita~~iM~sp-----vv~v~pdDsi~~vv~lM~~~g~SQlPVi~---~~k~VGsItE~~iv~~~le~~e--------- 125 (187)
T COG3620 63 TRITAKTIMHSP-----VVSVSPDDSISDVVNLMRDKGISQLPVIE---EDKVVGSITENDIVRALLEGME--------- 125 (187)
T ss_pred ceEeHhhhccCC-----eeEECchhhHHHHHHHHHHcCCccCceee---CCeeeeeecHHHHHHHHhcccc---------
Confidence 467899999986 67789999999999999999999999997 5899999999999998744211
Q ss_pred ceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc--ceeEEEcCCCcEEEEEeHHHHHHHHhh
Q psy9748 894 IVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT--KQLLFPANAKRTLEGLRGDSIVRFVQN 969 (1359)
Q Consensus 894 ~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr--R~LpVVdegGrLvGIITrkDILr~l~~ 969 (1359)
......++++|..+-.+|+++++++.+.+ +.+ ..++|+++| +++||||+.|+++.+.+
T Consensus 126 ----------------~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~-LL~~~~AVlV~e~G-~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 126 ----------------SIRSLRVREVMGEPFPTVSPDESLNVISQ-LLEEHPAVLVVENG-KVVGIITKADIMKLLAG 185 (187)
T ss_pred ----------------chhhhhHHHHhcCCCCcCCCCCCHHHHHH-HHhhCCeEEEEeCC-ceEEEEeHHHHHHHHhc
Confidence 12347899999999999999999999999 666 567777555 99999999999998765
No 46
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.10 E-value=5.6e-10 Score=136.23 Aligned_cols=120 Identities=18% Similarity=0.116 Sum_probs=101.4
Q ss_pred hhcccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCC
Q psy9748 811 EFASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLR 890 (1359)
Q Consensus 811 e~l~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~ 890 (1359)
+.++..+++++|.++ .+++++++|++|+.++|.+++++++||+| ++++++|+|+.+||...
T Consensus 84 ~~l~~VKv~~iMi~~-----pvtv~~d~tv~eA~~~m~~~~~s~l~VVD--~~gklvGIVT~rDL~~~------------ 144 (479)
T PRK07807 84 EVVAWVKSRDLVFDT-----PVTLSPDDTVGDALALLPKRAHGAVVVVD--EEGRPVGVVTEADCAGV------------ 144 (479)
T ss_pred HHHhhcccccccccC-----CeEECCCCCHHHHHHHHHhcCCceEEEEC--CCCeEEEEEeHHHHhcC------------
Confidence 456788899999886 34678999999999999999999999997 67899999999998421
Q ss_pred CccceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHH
Q psy9748 891 GDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFV 967 (1359)
Q Consensus 891 ~~s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l 967 (1359)
....+++++|++.+++++++++++++++.|.+ +++||+|++|+++|+||++|+++..
T Consensus 145 --------------------~~~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~ 204 (479)
T PRK07807 145 --------------------DRFTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRAT 204 (479)
T ss_pred --------------------ccCCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHh
Confidence 01135889999999999999999999995555 6799999877999999999999976
Q ss_pred hh
Q psy9748 968 QN 969 (1359)
Q Consensus 968 ~~ 969 (1359)
..
T Consensus 205 ~~ 206 (479)
T PRK07807 205 IY 206 (479)
T ss_pred hC
Confidence 54
No 47
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.09 E-value=8.6e-10 Score=108.14 Aligned_cols=107 Identities=13% Similarity=0.115 Sum_probs=88.5
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
.++++++++.++.+.|.+++++.+||++ ++++++|+|+.+|+...+..... ..
T Consensus 4 ~~v~~~~~l~~a~~~~~~~~~~~~~Vvd--~~g~~~G~vt~~dl~~~~~~~~~-------------------------~~ 56 (114)
T cd04619 4 AKIDVNATLQRAAKILGEPGIDLVVVCD--PHGKLAGVLTKTDVVRQMGRCGG-------------------------PG 56 (114)
T ss_pred EEECCCCcHHHHHHHHHhcCCCEEEEEC--CCCCEEEEEehHHHHHHHhhcCC-------------------------Cc
Confidence 4568999999999999999999999997 57889999999999876532100 01
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr 965 (1359)
....+.++|++.+++++++++++++++.|.+ +++||+|++|+++|+||++|+++
T Consensus 57 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 2346788999999999999999999995555 67999998779999999999975
No 48
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.08 E-value=3.9e-10 Score=135.21 Aligned_cols=129 Identities=17% Similarity=0.238 Sum_probs=102.7
Q ss_pred HHHHHHh-ccCCCCCChHHHHHHHhccccccccCchhhhHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHhhhcccCC
Q psy9748 129 AGLVRMF-APYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVHIASCIGNILSYLFPKYG 207 (1359)
Q Consensus 129 ~~l~~~~-~p~a~GsGIpeik~~l~g~~~~~~l~~~tl~~K~i~~~lav~sGls~GkEGP~vhiga~ig~~l~~~~~~~~ 207 (1359)
..++.++ .|...|+|.++++..+++. ..+++..++.|.+.+.+++++|.+.|+|+|++++|+++|..++++++
T Consensus 253 ~~~~~~~~~~~~~G~G~~~i~~~~~~~---~~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~--- 326 (390)
T cd01034 253 LALIGLVSGGLTFGTGYLQARAALEGG---GGLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLG--- 326 (390)
T ss_pred HHHHHHhCCCccccCcHHHHHHHHhCC---CcccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhc---
Confidence 3333334 3567799999999988862 34667889999999999999999999999999999999999999883
Q ss_pred CChhhHHHHHHhhHhhhhhhhcCCCccceeeeeeecccccceeehhhhhhhhhhcccccccc
Q psy9748 208 RNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFFLFFRIFHLEMEGRRRRGRPRLRW 269 (1359)
Q Consensus 208 ~~~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l~~~~~~~~~~~~~~~~~~~Ar~~~r~ 269 (1359)
. .+.+.+..+|+||++|+++++|+++++|.+|+.. +...+.+.|. ++..|..+.+.
T Consensus 327 ~--~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~---~~~~l~p~li-a~~~A~~v~~~ 382 (390)
T cd01034 327 S--VSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTG---DQQMLLPLLA-AALLASGVSRL 382 (390)
T ss_pred C--CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhC---ChhhHHHHHH-HHHHHHHHHHH
Confidence 1 4678999999999999999999999999999963 3344555444 44455554444
No 49
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.05 E-value=6.9e-10 Score=135.33 Aligned_cols=148 Identities=22% Similarity=0.237 Sum_probs=110.9
Q ss_pred ccccccccccccCCCCeEEEeCCCCCHHHHHHHHHh-----cCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccC
Q psy9748 814 STALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKE-----TEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEG 888 (1359)
Q Consensus 814 ~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~-----~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~ 888 (1359)
.+.+|+++|+++ ++.+++++|++|+.+.+++ +....+||+| ++++++|+|+.+||..+
T Consensus 129 ~e~tvg~iMt~~-----~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd--~~~~l~GvV~l~dLl~a---------- 191 (449)
T TIGR00400 129 SDDSAGRIMTIE-----YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTN--ESKHLKGVLSIRDLILA---------- 191 (449)
T ss_pred CcchHHHhCcCc-----eEEECCCCcHHHHHHHHHhcCCCccceeEEEEEC--CCCeEEEEEEHHHHhcC----------
Confidence 467899999976 5678999999999999985 2234566665 57899999999998632
Q ss_pred CCCccceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHH
Q psy9748 889 LRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIV 964 (1359)
Q Consensus 889 ~~~~s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDIL 964 (1359)
.+...++++|++.+++++++++++++++ .|+ ..+||+|++|+++|+||.+|++
T Consensus 192 ----------------------~~~~~v~~im~~~~~~v~~~~~~~eal~-~m~~~~~~~lpVVD~~g~lvGiIt~~Dil 248 (449)
T TIGR00400 192 ----------------------KPEEILSSIMRSSVFSIVGVNDQEEVAR-LIQKYDFLAVPVVDNEGRLVGIVTVDDII 248 (449)
T ss_pred ----------------------CCCCcHHHHhCCCCeeECCCCCHHHHHH-HHHHcCCCEEeEEcCCCeEEEEEEHHHHH
Confidence 0123588999999999999999999999 666 4689999888999999999999
Q ss_pred HHHhhccCCCCCCCCCCccccccccccccEEecCCCCHHHHHHHHHHcCC
Q psy9748 965 RFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVVDMYKKRSI 1014 (1359)
Q Consensus 965 r~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~dtpLeel~~lm~~~gI 1014 (1359)
+.+.++.. ++++.....+..++..+++....+.++.+
T Consensus 249 ~~l~~~~~-------------ed~~~~~gv~~~~~~~l~~~~~~~~~~R~ 285 (449)
T TIGR00400 249 DVIQSEAT-------------EDFYMIAAVKPLDDSYFDTSILVMAKNRI 285 (449)
T ss_pred HHHHhhhH-------------HHHHHhcCCCCCcchhhhchHHHHHHhcc
Confidence 99876432 23344333333345556666666665543
No 50
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.05 E-value=1.5e-09 Score=104.98 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=87.0
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..++++.+++++.+.+.+.+++.+||++ ++++++|+++.+|+..++..... ..
T Consensus 4 ~~i~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~Giv~~~~l~~~~~~~~~-------------------------~~ 56 (113)
T cd04623 4 ITVRPDATVAEAAKLMAEKNIGAVVVVD--DGGRLVGIFSERDIVRKVALRGA-------------------------SA 56 (113)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeEEEEC--CCCCEEEEEehHHHHHHHhhcCC-------------------------Cc
Confidence 3467899999999999999999999997 45799999999999887632110 01
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRF 966 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~ 966 (1359)
...++.++|++.+.++++++++.++++ .|. +++||+++ |+++|+||++|++++
T Consensus 57 ~~~~~~~~~~~~~~~v~~~~~~~~~l~-~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~~ 113 (113)
T cd04623 57 LDTPVSEIMTRNVITVTPDDTVDEAMA-LMTERRFRHLPVVDG-GKLVGIVSIGDVVKA 113 (113)
T ss_pred cccCHHHhcCCCcEEECCCCcHHHHHH-HHHHcCCCEeEEEeC-CEEEEEEEHHHhhcC
Confidence 134678899888999999999999999 555 57899988 699999999999863
No 51
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.05 E-value=1.2e-09 Score=107.90 Aligned_cols=113 Identities=16% Similarity=0.085 Sum_probs=84.6
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
+.+++++++.++.++|.+++++.+||++ ++++++|+++.+||...+....... + .....
T Consensus 4 ~~i~~~~~l~~a~~~~~~~~~~~~pVv~--~~~~~~Giv~~~dl~~~~~~~~~~~-----------------~--~~~~~ 62 (120)
T cd04641 4 ATARPDTPLIDVLDMLVERRVSALPIVD--ENGKVVDVYSRFDVINLAKEGAYNN-----------------L--DLTVG 62 (120)
T ss_pred EEEcCCCCHHHHHHHHHHcCCCeeeEEC--CCCeEEEEEeHHHHHHHHhcCcccc-----------------c--cCCHH
Confidence 4568999999999999999999999997 5789999999999997653211000 0 00000
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRF 966 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~ 966 (1359)
......+.|...+.++++++++.++++ +|. +++||+|++|+++|+||++|++++
T Consensus 63 ~~~~~~~~~~~~~~~v~~~~~l~~~~~-~m~~~~~~~l~Vvd~~~~~~Givt~~di~~~ 120 (120)
T cd04641 63 EALERRSQDFEGVRTCSPDDCLRTIFD-LIVKARVHRLVVVDENKRVEGIISLSDILQF 120 (120)
T ss_pred HHHhhcccCCCCCeEEcCCCcHHHHHH-HHHhcCccEEEEECCCCCEEEEEEHHHhhcC
Confidence 001223445566789999999999999 555 679999987899999999999864
No 52
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.04 E-value=1.3e-09 Score=105.22 Aligned_cols=91 Identities=19% Similarity=0.186 Sum_probs=78.2
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCC
Q psy9748 831 SVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGA 910 (1359)
Q Consensus 831 vviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~ 910 (1359)
++++++++++.++.++|.+++++++||+++ ++++++|+|+.+|+...+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~~~~~~Givt~~Dl~~~~------------------------------- 50 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDS-RKQQFVGMLTITDFILIL------------------------------- 50 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeC-CCCEEEEEEEHHHHhhhe-------------------------------
Confidence 456789999999999999999999999972 247899999999997542
Q ss_pred CcccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCC-CcEEEEEeHHHHHH
Q psy9748 911 PPILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANA-KRTLEGLRGDSIVR 965 (1359)
Q Consensus 911 ~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdeg-GrLvGIITrkDILr 965 (1359)
. ++++++++++.++++.|.+ +++||+|++ |+++|+||++|+++
T Consensus 51 ----~--------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 51 ----R--------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred ----e--------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 0 6789999999999995555 789999976 89999999999986
No 53
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.04 E-value=8.9e-10 Score=110.58 Aligned_cols=108 Identities=17% Similarity=0.229 Sum_probs=88.9
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
+.+++++++.++.+.|.+++++.+||++ ++++++|+|+.+|+...+.+... .
T Consensus 5 ~~v~~~~~v~~a~~~m~~~~~~~~~Vvd--~~~~~~Gii~~~dl~~~~~~~~~--------------------------~ 56 (124)
T cd04608 5 VTVLPTVTCAEAIEILKEKGFDQLPVVD--ESGKILGMVTLGNLLSSLSSGKV--------------------------Q 56 (124)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCCEEEEEEHHHHHHHHHHhcc--------------------------C
Confidence 4568999999999999999999999997 56789999999999876543211 1
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHh---------hc---ceeEEEcCCCcEEEEEeHHHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHT---------FT---KQLLFPANAKRTLEGLRGDSIVRFV 967 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~m---------Fr---R~LpVVdegGrLvGIITrkDILr~l 967 (1359)
...+++++|++.+.+++++++++++.+.+ ++ +++||++++|+++||||++|+++++
T Consensus 57 ~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 57 PSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred CCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 23579999999999999999999999822 22 5678888777999999999999863
No 54
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.04 E-value=1.7e-09 Score=105.67 Aligned_cols=104 Identities=12% Similarity=0.066 Sum_probs=85.3
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
+.+++++++.++.+.|.+++++.+||++ ++++++|+|+..|+.....+. .
T Consensus 4 ~~v~~~~~l~~a~~~~~~~~~~~~~V~d--~~~~~~G~v~~~dl~~~~~~~----------------------------~ 53 (111)
T cd04603 4 VSVNCENPLREAIKMINELGARAVVVVD--EENKVLGQVTLSDLLEIGPND----------------------------Y 53 (111)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCEEEEEc--CCCCEEEEEEHHHHHhhcccc----------------------------c
Confidence 4568999999999999999999999997 568999999999997632100 0
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr 965 (1359)
....+.++|...+.++++++++.++++.|.+ +++||+|++|+++|+||+.|+++
T Consensus 54 ~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 54 ETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred cccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 1134678888888999999999999995555 57999998779999999999986
No 55
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.03 E-value=1.8e-09 Score=131.80 Aligned_cols=140 Identities=19% Similarity=0.227 Sum_probs=108.8
Q ss_pred chhhhhccCCCCCc--chhhhcccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEE
Q psy9748 794 YDAHIMLNAYPFLD--SKEEFASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVL 871 (1359)
Q Consensus 794 Yd~~I~lng~PfLd--~k~e~l~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Is 871 (1359)
+|.|+..+++-..+ ...+.++..+++|+|.++ ++.+.+++++.++.+.|.+++++.+||+| ++++++|+|+
T Consensus 311 ~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~~-----~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd--~~~~~~Givt 383 (454)
T TIGR01137 311 NDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPA-----PVTVHPTETVGDAIEILREYGFDQLPVVT--EAGKVLGSVT 383 (454)
T ss_pred ChHHHHhcCCcccccccHHHHhccCCHHHhCcCC-----CeEECCCCcHHHHHHHHHHcCCCEEEEEc--CCCeEEEEEE
Confidence 45777777653221 124568889999999876 45678999999999999999999999997 5688999999
Q ss_pred hHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc-ceeEEEcC
Q psy9748 872 RRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT-KQLLFPAN 950 (1359)
Q Consensus 872 r~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr-R~LpVVde 950 (1359)
.+|+...+..... ....++.++|++.+.++++++++.++++ +|+ +..+|+++
T Consensus 384 ~~dl~~~~~~~~~--------------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~-~~~~~~~~vV~~ 436 (454)
T TIGR01137 384 LRELLSALFAGKA--------------------------NPDDAVSKVMSKKFIQIGEGEKLSDLSK-FLEKNSSAIVTE 436 (454)
T ss_pred HHHHHHHHhccCC--------------------------CcCCCHHHhcCCCCeEECCcCcHHHHHH-HHHHCCeeEEEE
Confidence 9999886532110 1123578899998899999999999999 666 44555555
Q ss_pred CCcEEEEEeHHHHHHHH
Q psy9748 951 AKRTLEGLRGDSIVRFV 967 (1359)
Q Consensus 951 gGrLvGIITrkDILr~l 967 (1359)
+|+++|+||++|+++++
T Consensus 437 ~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 437 EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CCEEEEEEEHHHHHHhh
Confidence 56999999999999875
No 56
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.00 E-value=4e-09 Score=129.54 Aligned_cols=163 Identities=15% Similarity=0.100 Sum_probs=117.6
Q ss_pred CcchHHHHhHHHHHHHHHHhhccCCCcchhhhhccCCCCCcch---hhhc-ccccccccccccCCCCeEEEeCCCCCHHH
Q psy9748 767 GVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFLDSK---EEFA-STALASDVMQPKHSDPLSVLTQDSMTVQD 842 (1359)
Q Consensus 767 ~~~~ilP~miav~is~~v~~~~~~~sIYd~~I~lng~PfLd~k---~e~l-~~~~V~DVMt~~~~~pLvviv~~~~TV~e 842 (1359)
+..+=+|+.-+.|.+.. +|. +.-.+.+.+|+++++.. +++. .-..|+++|.....+| .++++++|+.|
T Consensus 47 ~i~l~iP~~Satmdtvt-gda-----lAiala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~~~--~tV~pd~tl~e 118 (502)
T PRK07107 47 AITLNIPLVSAIMQSVS-DDN-----MAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSD--SNLTPDNTLAD 118 (502)
T ss_pred ccccCCChHHHHHHHHh-hHH-----HHHHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcCCC--CEeCCCCcHHH
Confidence 33444576665555444 443 34566778888876532 2222 2245888886432223 25689999999
Q ss_pred HHHHHHhcCCCeEEEEEeC-CCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCCcccccccccc
Q psy9748 843 VETLLKETEHNGFPVVVSR-ESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILD 921 (1359)
Q Consensus 843 l~~lL~~~~~sgfPVVds~-~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~~~idL~~iMd 921 (1359)
+.++|.+++++++||+|+. ++++++|+|+.+|+.... . ....+++++|+
T Consensus 119 Al~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~----~--------------------------~~~~~V~dIMt 168 (502)
T PRK07107 119 VLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR----M--------------------------SLDTKVKDFMT 168 (502)
T ss_pred HHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc----c--------------------------CCCCCHHHHhC
Confidence 9999999999999999842 268999999999996321 0 12246889999
Q ss_pred c--CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHH
Q psy9748 922 M--APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFV 967 (1359)
Q Consensus 922 ~--sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l 967 (1359)
+ .++++++++++.++++.|-+ +.+||+|++|+++|+||++|+++..
T Consensus 169 ~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 169 PFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred CCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 7 67899999999999994444 6799999888999999999999854
No 57
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.00 E-value=4e-09 Score=103.09 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=86.8
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCC-CeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCC
Q psy9748 831 SVLTQDSMTVQDVETLLKETEHNGFPVVVSRES-QYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPG 909 (1359)
Q Consensus 831 vviv~~~~TV~el~~lL~~~~~sgfPVVds~~d-~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~ 909 (1359)
+..+++++++.++.+.|.+.+++.+||++ ++ ++++|+++.+||...+.....
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~~G~v~~~dl~~~~~~~~~------------------------- 55 (114)
T cd04630 3 VVTIDGLATVAEALQLMKEHGVSSLVVEK--RRESDAYGIVTMRDILKKVVAEGR------------------------- 55 (114)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCCCcEEEEEehHHHHHHHHhCCC-------------------------
Confidence 34678999999999999999999999997 44 789999999999886532110
Q ss_pred CCcccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 910 APPILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 910 ~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
.....++.++|...+.++++++++.++++ .|. +.+||+|+ |+++|+||++|+++
T Consensus 56 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~-~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 56 DPDRVNVYEIMTKPLISVSPDMDIKYCAR-LMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred CCCccCHHHHhcCCCeeECCCCCHHHHHH-HHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 01234678889888899999999999999 555 56899988 69999999999975
No 58
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.99 E-value=2.5e-09 Score=104.20 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=88.3
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
+.+++++++.++.+.+.+.+++.+||++ ++++++|+|+.+|+...+......+ ....
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~~Giv~~~dl~~~~~~~~~~~---------------------~~~~ 60 (116)
T cd04643 4 AYVQDTNTLRHALLVLTKHGYSAIPVLD--KEGKYVGTISLTDILWKLKGLENLD---------------------LERL 60 (116)
T ss_pred EEECCCCcHHHHHHHHHHCCCceeeeEC--CCCcEEEEEeHHHHHHHhhccCchh---------------------HHHH
Confidence 4578999999999999999999999997 5688999999999987653211000 0000
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc-ceeEEEcCCCcEEEEEeHHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT-KQLLFPANAKRTLEGLRGDSIVRF 966 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr-R~LpVVdegGrLvGIITrkDILr~ 966 (1359)
....+.++|++.+.++++++++.++++.|.+ +.+||+|++|+++|+||++|++++
T Consensus 61 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 61 VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQPFLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred hCCcHHHHhcCCCceecCCCCHHHHHHHHhcCCceeEEeCCCeEEEEEEHHHhhcC
Confidence 1245778899999999999999999994444 678999987899999999999863
No 59
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.99 E-value=3e-09 Score=105.24 Aligned_cols=117 Identities=13% Similarity=0.126 Sum_probs=89.2
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCC-CeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRES-QYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGA 910 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d-~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~ 910 (1359)
..++++.++.++.++|.+.+++.+||++ ++ ++++|+|+++||...+.+...... . +. .....
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~i~V~d--~~~~~~~G~v~~~dl~~~~~~~~~~~~-----~---~~-------~~~~~ 66 (125)
T cd04631 4 VTVPPTTPIMEAAKIMVRNGFRRLPVVD--EGTGKLVGIITATDILKYLGGGEKFNK-----I---KT-------GNGLE 66 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCcccceeEe--CCCCEEEEEEEHHHHHHHhhccchhcc-----c---cc-------cccch
Confidence 4568999999999999999999999997 34 899999999999987643211000 0 00 00011
Q ss_pred CcccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHH
Q psy9748 911 PPILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRF 966 (1359)
Q Consensus 911 ~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~ 966 (1359)
....++.++|++.+.++++++++.++++ +|+ +.+||+|++|+++|+||++|++++
T Consensus 67 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~-~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 67 AINEPVRSIMTRNVITITPDDSIKDAAE-LMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred hhhcCHHHHhcCCceEeCCCCcHHHHHH-HHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 1234678889889999999999999999 666 569999986799999999999863
No 60
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.98 E-value=3.2e-09 Score=102.77 Aligned_cols=105 Identities=18% Similarity=0.313 Sum_probs=87.4
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..++++++++++.+.|.+.+++.+||++ ++++++|+|+++||...+.+... .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~G~v~~~~l~~~~~~~~~--------------------------~ 55 (114)
T cd04613 4 VTIPEDTPLNELLDVIAHSPENNFPVVD--DDGRLVGIVSLDDIREILFDPSL--------------------------Y 55 (114)
T ss_pred eeeCCCCcHHHHHHHHHhCCCcceeEEC--CCCCEEEEEEHHHHHHHHhcccc--------------------------c
Confidence 4578999999999999999999999997 45789999999999876532110 1
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcC-CCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPAN-AKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVde-gGrLvGIITrkDILr 965 (1359)
...++.++|++.+.++++++++.++++ .|+ +++||+++ .|+++|+||++|+++
T Consensus 56 ~~~~v~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 56 DLVVASDIMTKPPVVVYPEDSLEDALK-KFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred ccEEHHHhccCCCcEEcCCCCHHHHHH-HHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 125688999999999999999999999 555 57899987 679999999999975
No 61
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.98 E-value=3.9e-09 Score=103.23 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=86.6
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..+++++++.++.+.|.+.+++.+||++ ++++++|+++.+||...+.+... .
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~~G~v~~~dl~~~~~~~~~--------------------------~ 55 (115)
T cd04593 4 PVLSATTPLREAAEQLIESKHGSALVVD--RDGGVVGIITLPDLLRALEADEA--------------------------G 55 (115)
T ss_pred cEeCCCCCHHHHHHHHHhCCCcEEEEEc--CCCCEEEEEEHHHHHHHHhcccc--------------------------c
Confidence 3567899999999999999999999997 56899999999999876532110 1
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCC--CcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANA--KRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdeg--GrLvGIITrkDILr 965 (1359)
....++++|.+.+.++++++++.++++.|-+ +++||+|++ |+++|+||++|+++
T Consensus 56 ~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 56 EPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 1234778888999999999999999994434 579999876 79999999999986
No 62
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.97 E-value=3.5e-09 Score=102.57 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=86.1
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..+.++++++++.+.+.+.+++.+||++ ++++++|+|+..|+...+....
T Consensus 4 ~~v~~~~~i~e~~~~~~~~~~~~~~V~~--~~~~~~G~v~~~~l~~~~~~~~---------------------------- 53 (111)
T cd04639 4 ETLSPADTLDDAADALLATTQHEFPVVD--GDGHLVGLLTRDDLIRALAEGG---------------------------- 53 (111)
T ss_pred eEcCCCCcHHHHHHHHHHcCCCcceEEC--CCCcEEEEeeHHHHHHHHHhcC----------------------------
Confidence 3467899999999999988899999997 4678999999999987653210
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRF 966 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~ 966 (1359)
...++.++|+..+.+++++++++++++ .|+ +++||+++.|+++|+||++|+.++
T Consensus 54 ~~~~v~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~ 111 (111)
T cd04639 54 PDAPVRGVMRRDFPTVSPSATLDAVLR-LMQQGGAPAVPVVDGSGRLVGLVTLENVGEL 111 (111)
T ss_pred CCCcHHHHhcCCCcEECCCCcHHHHHH-HHHhcCCceeeEEcCCCCEEEEEEHHHhhcC
Confidence 113577888888999999999999999 555 669999886799999999999763
No 63
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.95 E-value=3.9e-09 Score=103.97 Aligned_cols=115 Identities=19% Similarity=0.245 Sum_probs=89.6
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..+.+++++.++.+.|.+.+++++||++ ++++++|+++.+|+...+....... .... ....
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~G~v~~~~l~~~~~~~~~~~------~~~~-----------~~~~ 64 (122)
T cd04803 4 VTLSEDDSLADAEELMREHRIRHLPVVN--EDGKLVGLLTQRDLLRAALSSLSDN------GEES-----------LTKE 64 (122)
T ss_pred EEeCCCCcHHHHHHHHHHcCcccccEEC--CCCCEEEEEEHHHHHHHhccccccc------cccc-----------cccc
Confidence 3468999999999999999999999997 4589999999999987653211100 0000 0012
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRF 966 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~ 966 (1359)
...++.++|+..++++++++++.++++ +|+ +.+||+|++|+++|+||++|++++
T Consensus 65 ~~~~v~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 65 RDVPVAEVMKTDVLTVTPDTPLREAAE-IMVENKIGCLPVVDDKGTLVGIITRSDFLRL 122 (122)
T ss_pred cCcCHHHhhCCCCeEeCCCCcHHHHHH-HHHHcCCCeEEEEcCCCCEEEEEEHHHhhcC
Confidence 345788999999999999999999999 666 568999987799999999999863
No 64
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.95 E-value=6e-09 Score=100.26 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=86.2
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
.+++++.++.++.+.|.+++++.+||++ + ++++|+++.+|+...+..... .
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~-~~~~G~v~~~dl~~~~~~~~~--------------------------~ 54 (110)
T cd04609 4 VSVAPDDTVSQAIERMREYGVSQLPVVD--D-GRVVGSIDESDLLDALIEGKA--------------------------K 54 (110)
T ss_pred EEECCCCcHHHHHHHHHHcCCceeeEee--C-CeeEEEEeHHHHHHHHhcccc--------------------------c
Confidence 3468899999999999999999999997 4 789999999999987532110 0
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc--ceeEEEcCCCcEEEEEeHHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT--KQLLFPANAKRTLEGLRGDSIVRF 966 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr--R~LpVVdegGrLvGIITrkDILr~ 966 (1359)
...++.++|++.++++++++++.++.+ +|+ ..+||++++|+++|+||++|+++|
T Consensus 55 ~~~~~~~~~~~~~~~v~~~~~l~~~~~-~~~~~~~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 55 FSLPVREVMGEPLPTVDPDAPIEELSE-LLDRGNVAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred cCcCHHHHhcCCCceeCCCCcHHHHHH-HHHhCCceeEEecCCeEEEEEeHHHhhcC
Confidence 123577888888899999999999999 777 557888877799999999999874
No 65
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.95 E-value=5.1e-09 Score=101.36 Aligned_cols=99 Identities=27% Similarity=0.382 Sum_probs=84.6
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
.+++++++++++.+.+.+++++.+||++ ++++++|+|+.+||....
T Consensus 5 ~~~~~~~~~~~a~~~~~~~~~~~~~V~d--~~~~~~G~v~~~~l~~~~-------------------------------- 50 (108)
T cd04596 5 GYLTTTDTVKDWHELNKETGHSRFPVVD--EKNKVVGIVTSKDVAGKD-------------------------------- 50 (108)
T ss_pred EEeCCCCCHHHHHHHHHHcCCCceeEEC--CCCeEEEEecHHHHhccc--------------------------------
Confidence 4568999999999999999999999997 578999999999996421
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
...+++++|+..+.++++++++.++++ +|. +.+||++++|+++|+||++|+++
T Consensus 51 ~~~~v~~~~~~~~~~v~~~~~l~~~~~-~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 51 PDTTIEKVMTKNPITVNPKTSVASVAH-MMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred ccccHHHHhcCCCeEECCCCCHHHHHH-HHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 113577889888999999999999999 555 67899998789999999999975
No 66
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.94 E-value=5.4e-09 Score=127.49 Aligned_cols=117 Identities=19% Similarity=0.247 Sum_probs=96.3
Q ss_pred ccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCC-CCeEEEEEEhHHHHHHHHhhhhhccCCCCc
Q psy9748 814 STALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRE-SQYLVGFVLRRDLNLAIANAKRTLEGLRGD 892 (1359)
Q Consensus 814 ~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~-d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~ 892 (1359)
.-...++.|.++ ++.+++++|++|+.++|.+++++++||++++. .++++|+|+.+||....
T Consensus 78 ~Vk~~~~~~~~~-----~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~------------- 139 (450)
T TIGR01302 78 RVKRAENGIISD-----PVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK------------- 139 (450)
T ss_pred hhccccCceecC-----ceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh-------------
Confidence 345578888876 35678999999999999999999999998321 16999999999997431
Q ss_pred cceecccCCCCCCCCCCCCcccccccccc-cCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHH
Q psy9748 893 SIVRFVQNDTQPQPLPGAPPILRLDKILD-MAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFV 967 (1359)
Q Consensus 893 s~v~F~~~~~~p~~~~~~~~~idL~~iMd-~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l 967 (1359)
....+++++|+ ..+++++++++++++++ +|+ +.+||+|++|+++|+||++|+++.+
T Consensus 140 ------------------~~~~~V~dvm~~~~~~~V~~~~sl~eal~-~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 140 ------------------DKGKPVSEVMTREEVITVPEGIDLEEALK-VLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred ------------------cCCCCHHHhhCCCCCEEECCCCcHHHHHH-HHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 01245888998 48899999999999999 555 5699999988999999999999975
No 67
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.94 E-value=5.2e-09 Score=103.39 Aligned_cols=115 Identities=18% Similarity=0.252 Sum_probs=88.7
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..++++.++.++.+.+.+.+++.+||++ ++++++|+|+.+||...+....... ....+. ...
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~Giv~~~~l~~~~~~~~~~~------~~~~~~----------~~~ 66 (124)
T cd04600 5 VTVTPDTSLEEAWALLRRHRIKALPVVD--GDRRLVGIVTQRDLLRHARPDGRRP------LRGRLR----------GRD 66 (124)
T ss_pred EEeCCCCCHHHHHHHHHHcCCceeeEEC--CCCCEEEEEEHHHHHhhhcccccch------hhhhhh----------ccc
Confidence 4568999999999999999999999997 4589999999999987653211000 000000 012
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
...++.++|++.++++++++++.++++ +|+ +.+||+|++|+++|+||++|+++
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVP-LLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHH-HHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 345688999999999999999999999 555 67999998789999999999975
No 68
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.93 E-value=5.2e-09 Score=101.70 Aligned_cols=106 Identities=16% Similarity=0.254 Sum_probs=86.5
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..+++++++.++.+.|.+++++.+||++ ++++++|+|+.+|+...+...... ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~G~v~~~~l~~~~~~~~~~------------------------~~ 57 (114)
T cd04629 4 VTFTPDMSVTEAVEKLLKSKISGGPVVD--DNGNLVGFLSEQDCLKQLLESSYH------------------------CD 57 (114)
T ss_pred eEeCCCCCHHHHHHHHHhcCCCCccEEC--CCCeEEEEeehHHHHHHhhhhhhc------------------------cC
Confidence 3468899999999999988889999997 568999999999998766332100 01
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
...++.++|++.+.++++++++.++++ .|. +++||+|+ |+++|+||++|+++
T Consensus 58 ~~~~v~~~~~~~~~~v~~~~~l~~~~~-~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 58 GVATVRDIMTTEVLTVSPDDSIVDLAQ-LMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CCccHHHHhccCceEECCCCcHHHHHH-HHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 224578889988999999999999999 555 56899988 69999999999986
No 69
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.92 E-value=1e-08 Score=126.23 Aligned_cols=116 Identities=13% Similarity=0.147 Sum_probs=93.8
Q ss_pred cccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCC-CCeEEEEEEhHHHHHHHHhhhhhccCCCCccceec
Q psy9748 819 SDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRE-SQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRF 897 (1359)
Q Consensus 819 ~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~-d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F 897 (1359)
+..|.++ .+++++++|+.|+.++|.+++++++||+++++ +++++|+|+.+|+....
T Consensus 103 ~~gmi~d-----pvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~------------------ 159 (505)
T PLN02274 103 RVGFVSD-----PVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN------------------ 159 (505)
T ss_pred cccccCC-----CeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc------------------
Confidence 3446665 34679999999999999999999999997321 47999999999996431
Q ss_pred ccCCCCCCCCCCCCcccccccccccC--CeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhc
Q psy9748 898 VQNDTQPQPLPGAPPILRLDKILDMA--PITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQND 970 (1359)
Q Consensus 898 ~~~~~~p~~~~~~~~~idL~~iMd~s--PiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~ 970 (1359)
....+++++|++. .++++++++++++++.|-+ +.+||+|++++++|+||++|+++.+...
T Consensus 160 -------------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p 224 (505)
T PLN02274 160 -------------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYP 224 (505)
T ss_pred -------------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCc
Confidence 0124688999877 6799999999999994444 6799999888999999999999988653
No 70
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.92 E-value=5.9e-09 Score=104.93 Aligned_cols=125 Identities=22% Similarity=0.232 Sum_probs=89.1
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..+.+++++.++.+.+.+.+++++||++ ++++++|+|+.+||...+............ ....|... ......
T Consensus 4 ~~v~~~~~l~~~~~~~~~~~~~~~~V~d--~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~ 75 (132)
T cd04636 4 ITVKKDDTLRDVVEILLTGKISGVPVVD--NEGRVVGIVSEGDLIRKIYKGKGLFYVTLL-YSVIFLDE-----SKIKKL 75 (132)
T ss_pred eEeCCCCcHHHHHHHHHHhCCCccceEC--CCCCEEEEEeHHHHHHHHhccCCccccccc-ccccccch-----HHHHHH
Confidence 3468999999999999999999999997 567899999999998876432110000000 00111100 000001
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRF 966 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~ 966 (1359)
...++.++|++.+..+++++++.++++ +|. +.+||+|+ |+++|+||++|+++|
T Consensus 76 ~~~~v~~~~~~~~~~v~~~~~l~~~~~-~~~~~~~~~~~V~~~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 76 LGKKVEEIMTKKVITVDEDTTIEDVAR-IMSKKNIKRLPVVDD-GKLVGIISRGDIIRS 132 (132)
T ss_pred cCCCHHHhccCCceEECCCCcHHHHHH-HHHHCCCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence 123688899999999999999999999 665 56999998 699999999999874
No 71
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.91 E-value=1.1e-08 Score=99.60 Aligned_cols=104 Identities=16% Similarity=0.172 Sum_probs=85.9
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
+.+++++++.++.+.|.+.+++.+||++ ++++++|+++.+|+...+.+.. .
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~~G~v~~~dl~~~~~~~~---------------------------~ 55 (113)
T cd04607 5 LLVSPDASILDALRKIDKNALRIVLVVD--ENGRLLGTVTDGDIRRALLKGL---------------------------S 55 (113)
T ss_pred eEECCCCCHHHHHHHHHhcCcCEEEEEC--CCCCEEEEEEcHHHHHHHhcCC---------------------------C
Confidence 3468999999999999998889999997 5688999999999987653210 1
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
....+.++|++.+.++++++++.++++ +|. +++||+|++|+++|+||++|++.
T Consensus 56 ~~~~v~~~~~~~~~~v~~~~~l~~~~~-~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 56 LDDPVSEVMNRNPITAKVGSSREEILA-LMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred cCCCHHHhhcCCCEEEcCCCCHHHHHH-HHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 123578899988999999999999999 555 67999998779999999999863
No 72
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.91 E-value=1.1e-08 Score=125.86 Aligned_cols=154 Identities=15% Similarity=0.176 Sum_probs=112.1
Q ss_pred ccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccce
Q psy9748 816 ALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIV 895 (1359)
Q Consensus 816 ~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v 895 (1359)
..++|+|.++ +++++++++++++.++|.+++++++||++ ++++++|+|+.+||....
T Consensus 87 k~~~dim~~~-----~v~i~~~~tv~ea~~~m~~~~~~~lpVvd--~~g~lvGiVt~~DL~~~~---------------- 143 (486)
T PRK05567 87 KRSESGVVTD-----PVTVTPDTTLAEALALMARYGISGVPVVD--ENGKLVGIITNRDVRFET---------------- 143 (486)
T ss_pred hhhhhcccCC-----CeEeCCCCCHHHHHHHHHHhCCCEEEEEc--cCCEEEEEEEHHHhhhcc----------------
Confidence 3478889876 35678999999999999999999999998 578999999999996421
Q ss_pred ecccCCCCCCCCCCCCcccccccccc-cCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhcc
Q psy9748 896 RFVQNDTQPQPLPGAPPILRLDKILD-MAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDT 971 (1359)
Q Consensus 896 ~F~~~~~~p~~~~~~~~~idL~~iMd-~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~ 971 (1359)
....+++++|+ +.++++++++++.++++.|.+ +.+||+|++|+++|+||++|+++.+....
T Consensus 144 ---------------~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~ 208 (486)
T PRK05567 144 ---------------DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPN 208 (486)
T ss_pred ---------------cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCC
Confidence 01135788898 678899999999999994444 67999999889999999999999864311
Q ss_pred CCCCCCCCCCccccccccccccEEecCCCCHHHHHHHHHHcCCCcC
Q psy9748 972 QPQPLPGAPPILRLDKILDMAPITITDQTPMETVVDMYKKRSISVT 1017 (1359)
Q Consensus 972 ~~~~~~~~~~~~rv~~im~~~~~tV~~dtpLeel~~lm~~~gI~lp 1017 (1359)
. ..+.....++...+... ++ + .+.++.|.+.++++.
T Consensus 209 a---~~d~~g~l~V~aai~~~-----~~-~-~e~a~~L~~agvdvi 244 (486)
T PRK05567 209 A---CKDEQGRLRVGAAVGVG-----AD-N-EERAEALVEAGVDVL 244 (486)
T ss_pred c---ccccCCCEEEEeecccC-----cc-h-HHHHHHHHHhCCCEE
Confidence 0 00111122334444332 21 1 567777888887654
No 73
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.91 E-value=1.4e-08 Score=98.21 Aligned_cols=102 Identities=23% Similarity=0.332 Sum_probs=85.1
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..++++++++++.+.+.+++++.+||++ ++++++|+++.+|+...+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~~G~v~~~~l~~~~~~~----------------------------- 53 (110)
T cd04605 5 VTISEDASIKEAAKLMIEENINHLPVVD--EDGRLVGIVTSWDISKAVARD----------------------------- 53 (110)
T ss_pred EEECCCCCHHHHHHHHHhCCCceEEEEC--CCCcEEEEEeHHHHHHHHhhC-----------------------------
Confidence 3568999999999999999999999997 568999999999998664210
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr 965 (1359)
..++.++|.+.+.+++++++++++++.|.+ +.+||++++|++.|+||++|+++
T Consensus 54 -~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 54 -KKSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred -ccCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 023778888889999999999999994444 56899998889999999999965
No 74
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.91 E-value=9.6e-09 Score=101.37 Aligned_cols=106 Identities=19% Similarity=0.172 Sum_probs=85.2
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..+++++++.++.+.|.+++.+.+||++ ++++++|+|+..|+..+..... ..
T Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~V~d--~~~~~~Givt~~dl~~~~~~~~--------------------------~~ 55 (118)
T cd04617 4 VVVRENTSVYDAIVTLFLEDVGSLFVVD--EDGDLVGVVSRKDLLKASIGGA--------------------------DL 55 (118)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCCEEEEEEHHHHHHHHHcCC--------------------------Cc
Confidence 4568999999999999999999999997 4678999999999988753210 01
Q ss_pred ccccccccccc--CCeEecCCCCHHHHHHHhhc---ceeEEEcCC---CcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDM--APITITDQTPMETVCGHTFT---KQLLFPANA---KRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~--sPiTV~~~tpLeeVle~mFr---R~LpVVdeg---GrLvGIITrkDILr 965 (1359)
....+.++|.+ .+.++++++++.++++.|.+ +++||+|++ |+++|+||++|+++
T Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 23456778874 67799999999999994444 679999876 69999999999875
No 75
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.90 E-value=1.5e-08 Score=98.01 Aligned_cols=102 Identities=21% Similarity=0.333 Sum_probs=85.3
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..++++++++++.+.|.+.+++.+||++ + ++++|+++.+||.....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~-~~~~G~v~~~~l~~~~~~~~---------------------------- 52 (110)
T cd04588 4 ITLNPNATLREAARLFNTHHIHGAPVVD--D-GKLVGIVTLSDIAHAIARGL---------------------------- 52 (110)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEee--C-CEEEEEEEHHHHHHHHhccc----------------------------
Confidence 4567889999999999999999999997 4 79999999999987643210
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
...++.++|...+.++++++++.++++ .|+ +++||++++|+++|+||++|+++
T Consensus 53 ~~~~v~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 53 ELAKVKDVMTKDVITIDEDEQLYDAIR-LMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred cccCHHHHhcCCceEECCCCCHHHHHH-HHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 114577888888999999999999999 665 57999988779999999999975
No 76
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.90 E-value=1.3e-08 Score=98.80 Aligned_cols=104 Identities=14% Similarity=0.174 Sum_probs=85.3
Q ss_pred EeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCCc
Q psy9748 833 LTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPP 912 (1359)
Q Consensus 833 iv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~~ 912 (1359)
.+.+++++.++.+.+.+.+++.+||++ ++++++|+++.+|+...+..... ..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~vvd--~~~~~~G~v~~~dl~~~~~~~~~--------------------------~~ 56 (113)
T cd04615 5 CVVLNTDIARAVAEMYTSGSRALPVVD--DKKRLVGIITRYDVLSYALESEE--------------------------LK 56 (113)
T ss_pred EeeCCCcHHHHHHHHHHcCCceEeEEc--CCCCEEEEEEHHHHHHhhhhhhh--------------------------hc
Confidence 457899999999999999999999997 56889999999999875422110 11
Q ss_pred ccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 913 ILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 913 ~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
...+.++|...+.++++++++.++++ .|+ ..+||+|++|+++|+||++|+++
T Consensus 57 ~~~i~~~~~~~~~~v~~~~~l~~~~~-~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 57 DAKVREVMNSPVITIDANDSIAKARW-LMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred CCcHHHhccCCceEECCCCcHHHHHH-HHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 23577889888999999999999999 555 46899998889999999999975
No 77
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.90 E-value=1.2e-08 Score=98.06 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=83.7
Q ss_pred EeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCCc
Q psy9748 833 LTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPP 912 (1359)
Q Consensus 833 iv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~~ 912 (1359)
.++++.++.++.+.|.+.+++.+||++ ++++++|+|+.+||......
T Consensus 6 ~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~~G~v~~~dl~~~~~~------------------------------- 52 (109)
T cd04583 6 TITPDRTLAEAIKLMRDKKVDSLLVVD--KDNKLLGIVSLESLEQAYKE------------------------------- 52 (109)
T ss_pred EECCCCCHHHHHHHHHHCCCceEEEEc--CCCcEEEEEEHHHHHHHhhc-------------------------------
Confidence 458899999999999999999999997 46889999999999765310
Q ss_pred ccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 913 ILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 913 ~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
..++.++|...+.++++++++.++++ .|+ +++||++++|+++|+||++|+++
T Consensus 53 ~~~v~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 53 AKSLEDIMLEDVFTVQPDASLRDVLG-LVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred CCcHhHhhcCCceEECCCCcHHHHHH-HHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 12467788888999999999999999 554 67999998779999999999975
No 78
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.90 E-value=1.2e-08 Score=101.87 Aligned_cols=120 Identities=14% Similarity=0.190 Sum_probs=87.4
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..+.+++++.++.++|.+.+++++||++ ++++++|+|+++||...+....... .+.. .+. .....
T Consensus 4 ~~i~~~~~~~~~~~~~~~~~~~~~~Vv~--~~~~~~G~it~~dl~~~~~~~~~~~---------~~~~---~~~-~~~~~ 68 (128)
T cd04632 4 ITVREDDSVGKAINVLREHGISRLPVVD--DNGKLTGIVTRHDIVDFVVRDRDKA---------RTGD---RSG-EKERM 68 (128)
T ss_pred eEeCCCCCHHHHHHHHHHcCCCEEEEEC--CCCcEEEEEEHHHHHHHHhhhhhhc---------chhh---hhh-hhhhh
Confidence 3567999999999999999999999997 5688999999999987653211000 0000 000 00001
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEc--CCCcEEEEEeHHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPA--NAKRTLEGLRGDSIVRF 966 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVd--egGrLvGIITrkDILr~ 966 (1359)
...+++++|++.++++++++++.++++.|.+ +.+||++ +.|+++|+||++|++++
T Consensus 69 ~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~ 128 (128)
T cd04632 69 LDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred ccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence 2346788999989999999999999996665 5677774 35699999999999863
No 79
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.89 E-value=1.4e-08 Score=98.49 Aligned_cols=103 Identities=16% Similarity=0.225 Sum_probs=85.5
Q ss_pred EeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCCc
Q psy9748 833 LTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPP 912 (1359)
Q Consensus 833 iv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~~ 912 (1359)
.++++++++++.+.+.+.+++.+||++ ++++++|+|+.+|+...+.... ..
T Consensus 5 ~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~~G~v~~~~l~~~~~~~~---------------------------~~ 55 (112)
T cd04624 5 TVDPDTSIREAAKLMAEENVGSVVVVD--PDERPIGIVTERDIVRAVAAGI---------------------------DL 55 (112)
T ss_pred EECCCCcHHHHHHHHHHcCCCEEEEEC--CCCCEEEEeeHHHHHHHHhccC---------------------------CC
Confidence 468899999999999999999999997 5689999999999987653211 11
Q ss_pred ccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 913 ILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 913 ~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
...+.++|++.+.++.+++++.++++ .|. ..+||++++|+++|+||++|+++
T Consensus 56 ~~~v~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTRDLVTVDPDEPVAEAAK-LMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccCCCEEECCCCcHHHHHH-HHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 23577889889999999999999999 555 46899988779999999999975
No 80
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.89 E-value=2e-08 Score=122.74 Aligned_cols=154 Identities=13% Similarity=0.088 Sum_probs=112.8
Q ss_pred hcccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCC
Q psy9748 812 FASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRG 891 (1359)
Q Consensus 812 ~l~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~ 891 (1359)
.....++.++|.++ .+++.+++|++++.++|.+++++.+||++ +++++|+|+.+||...
T Consensus 84 ~v~~VKv~eim~~~-----pvtv~p~~tI~eA~~lm~~~~~~~~vVvD---~gklvGIVT~rDL~~~------------- 142 (475)
T TIGR01303 84 TVAFVKSRDLVLDT-----PITLAPHDTVSDAMALIHKRAHGAAVVIL---EDRPVGLVTDSDLLGV------------- 142 (475)
T ss_pred HHhhcchhhccccC-----CeEECCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEEEHHHhhcC-------------
Confidence 45677888999876 24678999999999999999998888886 3689999999998421
Q ss_pred ccceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHh
Q psy9748 892 DSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQ 968 (1359)
Q Consensus 892 ~s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~ 968 (1359)
....+++++|++.++++++++++.++++.|.+ +++||+|++|+++|+||++|+++...
T Consensus 143 -------------------~~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 143 -------------------DRFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI 203 (475)
T ss_pred -------------------CCCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 01135889999999999999999999995555 67999998779999999999999765
Q ss_pred hccCCCCCCCCCCccccccccccccEEecCCCCHHHHHHHHHHcCCCc
Q psy9748 969 NDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVVDMYKKRSISV 1016 (1359)
Q Consensus 969 ~~~~~~~~~~~~~~~rv~~im~~~~~tV~~dtpLeel~~lm~~~gI~l 1016 (1359)
.....+. ....++... +.....+.+.++.+.+.|++.
T Consensus 204 ~~~~~d~----~grl~Vgaa-------v~~~~~~~~ra~~Lv~aGVd~ 240 (475)
T TIGR01303 204 YTPATDA----AGRLRIGAA-------VGINGDVGGKAKALLDAGVDV 240 (475)
T ss_pred CCchhhh----ccCceehhe-------eeeCccHHHHHHHHHHhCCCE
Confidence 4321110 011111111 122234667788888887544
No 81
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.89 E-value=6.3e-09 Score=105.12 Aligned_cols=126 Identities=16% Similarity=0.170 Sum_probs=87.5
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
.++++++++.++.+.|.+++++.+||++ ++++++|+|+++|+...+......... .........++.. . .....
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~Vvd--~~~~~~Gvi~~~dl~~~~~~~~~~~~~--~~~~~~~~~~~~~-~-~~~~~ 78 (135)
T cd04586 5 VTVSPETSVAEAARLMLDNHISGLPVVD--DDGRLVGIVSEGDLLRRAELGTERRRA--RWLDLLAGAEELA-A-AFVRS 78 (135)
T ss_pred EEeCCCCCHHHHHHHHHHcCCCCceEEC--CCCCEEEEeeHHHHHHHhcccCcchhh--hHHHHhcchHHHH-H-HHHHh
Confidence 4568999999999999999999999997 568999999999998754321000000 0000000000000 0 00001
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
...+++++|++.+.++++++++.++++ .|+ +++||+| .|+++|+||++|+++
T Consensus 79 ~~~~v~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 79 HGRKVADVMTRPVVTVGEDTPLAEVAE-LMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred cCCCHHHHhCCCceEeCCCCcHHHHHH-HHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 234688999999999999999999999 666 6799999 569999999999976
No 82
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=98.88 E-value=2.4e-09 Score=128.39 Aligned_cols=139 Identities=21% Similarity=0.200 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHhccCCCCCChHHHHHHHhccccccccCchhhhHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHhh
Q psy9748 122 LLFASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVHIASCIGNILSY 201 (1359)
Q Consensus 122 ~~~~~~a~~l~~~~~p~a~GsGIpeik~~l~g~~~~~~l~~~tl~~K~i~~~lav~sGls~GkEGP~vhiga~ig~~l~~ 201 (1359)
.+++++...++..+.|+..|+|-..+..++++......+ ...++.|.+.+.+++++|.+.|.|+|++.+|+++|..+++
T Consensus 243 ~~l~gl~~g~~~~~~p~~~G~G~~~i~~~~~~~~~~~~l-l~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~ 321 (388)
T cd01033 243 MPLAFLVIGLLSIFFPQILGNGRALAQLAFSTTLTLSLL-LILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGI 321 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHcCCchHHHH-HHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHH
Confidence 344555555556677999999999998888763211122 4568999999999999999999999999999999999999
Q ss_pred hcccCCCChhhHHHHHHhhHhhhhhhhcCCCccceeeeeeecccccceeehhhhhhhhhhcccc
Q psy9748 202 LFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFFLFFRIFHLEMEGRRRRGRP 265 (1359)
Q Consensus 202 ~~~~~~~~~~~~r~ll~agaaAGvaa~FgaPigGvlFalE~l~~~~~~~~~~~~~~~~~~~Ar~ 265 (1359)
.+..+. ++.+.+.+..+|+||++|+++++|+++++|.+|.. .++...++|.|. ++..|..
T Consensus 322 ~~~~~~-p~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Elt--g~~~~~l~Pl~i-a~~~a~~ 381 (388)
T cd01033 322 VWNALL-PPLSIAAFALIGAAAFLAATQKAPLTALILVLEFT--RQNPLFLIPLML-AVAGAVA 381 (388)
T ss_pred HHHHhC-CcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh--CCCHHHHHHHHH-HHHHHHH
Confidence 864321 33456789999999999999999999999999973 345566666665 3343333
No 83
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.87 E-value=1.7e-08 Score=97.73 Aligned_cols=101 Identities=19% Similarity=0.292 Sum_probs=84.6
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..++.++++.++.+.+.+.+++.+||++ + ++++|+|+.+||...+... .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~-~~~~G~v~~~dl~~~~~~~----------------------------~ 53 (110)
T cd04595 5 KTVRPEATIEEARELLLRYGHTALPVVE--G-GRVVGIISRRDVEKALRHG----------------------------L 53 (110)
T ss_pred eEeCCCCcHHHHHHHHHHcCCCeeeEee--C-CEEEEEEEHHHHHHHHhcc----------------------------c
Confidence 4568999999999999998999999998 3 8999999999998765211 0
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
...++.++|++.++++++++++.++++ +|+ +.+||++ +|+++|+||++|+++
T Consensus 54 ~~~~~~~~~~~~~~~v~~~~~l~~~~~-~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMSTDVVTVPPDTPLSEVQE-LMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcCCCEEECCCCcHHHHHH-HHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 124577889999999999999999999 665 6789999 459999999999975
No 84
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.87 E-value=9.8e-09 Score=128.30 Aligned_cols=196 Identities=17% Similarity=0.175 Sum_probs=128.3
Q ss_pred ccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhh-c-cC-----
Q psy9748 816 ALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRT-L-EG----- 888 (1359)
Q Consensus 816 ~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~-~-~~----- 888 (1359)
.+|+|+|+++ +.++++++++.++.++|.+++++.+||++ ++++++|+|+.+|+...+.+.... + ..
T Consensus 68 ~~V~dim~~~-----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~ 140 (546)
T PRK14869 68 PQVRDLEIDK-----PVTVSPDTSLKEAWNLMDENNVKTLPVVD--EEGKLLGLVSLSDLARAYMDILDPEILSKSPTSL 140 (546)
T ss_pred CcHHHhcCCC-----CcEECCCCcHHHHHHHHHHcCCCEEEEEc--CCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCH
Confidence 6799999875 35678999999999999999999999998 578999999999999866542210 0 00
Q ss_pred -----------------C---------------------CCccceecccC-------------------CCCCCCC----
Q psy9748 889 -----------------L---------------------RGDSIVRFVQN-------------------DTQPQPL---- 907 (1359)
Q Consensus 889 -----------------~---------------------~~~s~v~F~~~-------------------~~~p~~~---- 907 (1359)
. .....+.-... ...+...
T Consensus 141 ~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~l 220 (546)
T PRK14869 141 ENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLEL 220 (546)
T ss_pred HHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHH
Confidence 0 00000000000 0000000
Q ss_pred --C-----------------CCCcccccccccc-cCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHH
Q psy9748 908 --P-----------------GAPPILRLDKILD-MAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIV 964 (1359)
Q Consensus 908 --~-----------------~~~~~idL~~iMd-~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDIL 964 (1359)
. .-....+++++|+ +++++++++++++++.+.|.+ +++||+|++|+++|+||++|++
T Consensus 221 a~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~ 300 (546)
T PRK14869 221 AKENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLL 300 (546)
T ss_pred HHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhh
Confidence 0 0012457889999 889999999999999995544 6799999888999999999999
Q ss_pred HHHhh-----ccCCCCC--CC--------CCCccccccccccccEEe---cCCCCHHHHHHHHHHcCCCcCC
Q psy9748 965 RFVQN-----DTQPQPL--PG--------APPILRLDKILDMAPITI---TDQTPMETVVDMYKKRSISVTN 1018 (1359)
Q Consensus 965 r~l~~-----~~~~~~~--~~--------~~~~~rv~~im~~~~~tV---~~dtpLeel~~lm~~~gI~lp~ 1018 (1359)
+.... ++.+... .. .....+..+.+...++.+ +.....+.++++|.++++..+.
T Consensus 301 ~~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~ 372 (546)
T PRK14869 301 SPVRKKVILVDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSP 372 (546)
T ss_pred ccccCceEEEcCccccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCH
Confidence 86543 1111100 00 001123445666666554 2244566789999999988764
No 85
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.87 E-value=1.5e-08 Score=99.05 Aligned_cols=114 Identities=22% Similarity=0.316 Sum_probs=87.5
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..++++.++.++.+.|.+.+++.+||++ + ++++|+++++|+............ .....+ ..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~-~~~~G~i~~~~l~~~~~~~~~~~~----~~~~~~------------~~ 64 (122)
T cd04585 4 ITVTPDTSLMEALKLMKENSIRRLPVVD--R-GKLVGIVTDRDLKLASPSKATTLD----IWELYY------------LL 64 (122)
T ss_pred EEeCCCCcHHHHHHHHHhCCcceeeEec--C-CeEEEEEeHHHHHHhhhccccccc----chhhhh------------hh
Confidence 3468999999999999999999999997 3 899999999999876532110000 000000 01
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
...++.++|++.+.+++++++++++++ +|+ +.+||+++.|+++|+||++|+++
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~-~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTRDPITVSPDASVEEAAE-LMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccCCCeEeCCCCcHHHHHH-HHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 235678899999999999999999999 665 56899988679999999999986
No 86
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.86 E-value=2.4e-08 Score=96.90 Aligned_cols=105 Identities=18% Similarity=0.328 Sum_probs=84.9
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
.+++++++++++.+.|.+.+++.+||++ + ++++|+++++|+...+..... ..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~-~~~~G~i~~~~l~~~~~~~~~-------------------------~~ 55 (113)
T cd04622 4 VTVSPDDTIREAARLMREHDVGALPVCE--N-DRLVGIVTDRDIVVRAVAEGR-------------------------DP 55 (113)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEee--C-CEEEEEEEhHHHHHHHhhccC-------------------------Cc
Confidence 4568999999999999999999999997 3 899999999998743211100 01
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
...++.++|++.+.++.++++++++++ .|+ +.+||+|++|+++|+||++|+++
T Consensus 56 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 56 DTTTVGDVMTRGVVTVTEDDDVDEAAR-LMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred ccCCHHHhccCCccEECCCCCHHHHHH-HHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 123478889999999999999999999 666 56899998779999999999975
No 87
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.86 E-value=1.2e-08 Score=99.69 Aligned_cols=103 Identities=13% Similarity=0.153 Sum_probs=82.0
Q ss_pred EEeCCCCCHHHHHHHHHhcC-CCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETE-HNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGA 910 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~-~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~ 910 (1359)
..+++++++.++.+.|.+.+ .+.+||++ ++++++|+|+.+||.....+..
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~V~d--~~~~~~G~v~~~dl~~~~~~~~--------------------------- 54 (114)
T cd04801 4 PTVPAHLTLREFVREYVLGSNQRRFVVVD--NEGRYVGIISLADLRAIPTSQW--------------------------- 54 (114)
T ss_pred ceeCCCCCHHHHHHHHhccCCceeEEEEc--CCCcEEEEEEHHHHHHHHHhhc---------------------------
Confidence 45689999999999987665 78999997 5688999999999987652110
Q ss_pred CcccccccccccC--CeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 911 PPILRLDKILDMA--PITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 911 ~~~idL~~iMd~s--PiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
...++.++|++. +.++.+++++.++++ +|+ +++||+|++|+++|+||++|+++
T Consensus 55 -~~~~v~~~~~~~~~~~~v~~~~~l~~a~~-~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 55 -AQTTVIQVMTPAAKLVTVLSEESLAEVLK-LLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred -cccchhhhhcccccceEECCCCcHHHHHH-HHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 113466777643 568999999999999 665 67999998779999999999874
No 88
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.86 E-value=1.2e-08 Score=125.36 Aligned_cols=164 Identities=12% Similarity=0.159 Sum_probs=114.8
Q ss_pred HhcCCcchHHHHhHHHHHHHHHHhhccCCCcchhhhhccCCCCCcch-------hhhcccccccccccccCCCCeEEEeC
Q psy9748 763 ELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFLDSK-------EEFASTALASDVMQPKHSDPLSVLTQ 835 (1359)
Q Consensus 763 ElTG~~~~ilP~miav~is~~v~~~~~~~sIYd~~I~lng~PfLd~k-------~e~l~~~~V~DVMt~~~~~pLvviv~ 835 (1359)
.+|..+.+=+|++-+.|-+. + ...+...+-+..|+.+++.. ++...-..+++.|.++ .++++
T Consensus 42 ~l~~~~~l~~Pii~a~M~~v--t----~~~ma~a~a~~GglGvi~~~~~~e~~~~~v~kvk~~e~g~i~d-----pvtv~ 110 (495)
T PTZ00314 42 RLTRNIRLKIPIVSSPMDTV--T----EHKMAIAMALMGGIGVIHNNCSIEEQVEEVRKVKRFENGFIMD-----PYVLS 110 (495)
T ss_pred cccCCcccCCceeecCcccc--c----cHHHHHHHHHCCCeEEecCCCCHHHHHHHHhhccccccccccC-----CeecC
Confidence 56666677778776544211 1 11222233333444444311 1222223367788775 24678
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEEeCC-CCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCCccc
Q psy9748 836 DSMTVQDVETLLKETEHNGFPVVVSRE-SQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPIL 914 (1359)
Q Consensus 836 ~~~TV~el~~lL~~~~~sgfPVVds~~-d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~~~i 914 (1359)
+++|++++.++|.+++++++||+++++ +++++|+|+.+|+.... ....
T Consensus 111 pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-------------------------------~~~~ 159 (495)
T PTZ00314 111 PNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-------------------------------DKST 159 (495)
T ss_pred CCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-------------------------------cCCC
Confidence 999999999999999999999998421 47999999999997321 1124
Q ss_pred cccccccc--CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHh
Q psy9748 915 RLDKILDM--APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQ 968 (1359)
Q Consensus 915 dL~~iMd~--sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~ 968 (1359)
+++++|++ .+++++++++++++++.|.+ +.+||+|++++++|+||++|+++...
T Consensus 160 ~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 160 PVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred CHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 68899987 78899999999999994444 67999998889999999999998753
No 89
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.85 E-value=2.9e-08 Score=96.17 Aligned_cols=103 Identities=20% Similarity=0.286 Sum_probs=84.7
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..++++++++++.+.+.+.+++.+||++ + ++++|+|+.+|+...+.... ..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~i~V~~--~-~~~~G~v~~~~l~~~~~~~~--------------------------~~ 54 (111)
T cd04800 4 VTCSPDTTIREAARLMTEHRVSSLLVVD--D-GRLVGIVTDRDLRNRVVAEG--------------------------LD 54 (111)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeEEEEE--C-CEEEEEEEhHHHHHHHhccC--------------------------CC
Confidence 3468899999999999988899999997 3 89999999999986542110 01
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
...++.++|+..++++++++++.++++ .|+ .++||+++ |+++|+||++|+++
T Consensus 55 ~~~~i~~~~~~~~~~v~~~~~l~~~~~-~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 55 PDTPVSEVMTAPPITIPPDATVFEALL-LMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred ccCCHHHHhCCCCeEECCCCcHHHHHH-HHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 124577889999999999999999999 555 57899988 69999999999975
No 90
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.85 E-value=1.6e-08 Score=98.08 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=86.0
Q ss_pred EeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCCc
Q psy9748 833 LTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPP 912 (1359)
Q Consensus 833 iv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~~ 912 (1359)
++++++++.++.+.+.+.+++.+||++ ++++++|+++.+++...+.+... ..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~~G~v~~~~i~~~~~~~~~--------------------------~~ 57 (114)
T cd04604 6 LVSPDTSLKDALLEMSRKGLGMTAVVD--EDGRLVGIFTDGDLRRALEKGLD--------------------------IL 57 (114)
T ss_pred ccCCCCcHHHHHHHHHhcCccEEEEEc--CCCCEEEEechHHHHHHHhccCc--------------------------cc
Confidence 457899999999999888889999997 56789999999999987642110 11
Q ss_pred ccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 913 ILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 913 ~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
...+.++|++.+.++++++++.++++ .|. ..+||++++|+++|+||++|+++
T Consensus 58 ~~~v~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 58 TLPVADVMTRNPKTIDPDALAAEALE-LMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred cCCHHHhhccCCeEECCCCcHHHHHH-HHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 23578899998999999999999999 555 46899987779999999999976
No 91
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.85 E-value=2.1e-08 Score=100.04 Aligned_cols=119 Identities=18% Similarity=0.205 Sum_probs=84.9
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
+.+++++++.++.+.|.+++++.+||++ ++++++|+|+.+||.....+..... .........+. .
T Consensus 4 ~~v~~~~~~~~a~~~~~~~~~~~i~V~d--~~~~~~Giv~~~dl~~~~~~~~~~~-~~~~~~~~~~~------------~ 68 (126)
T cd04642 4 VSIDSDERVLDAFKLMRKNNISGLPVVD--EKGKLIGNISASDLKGLLLSPDDLL-LYRTITFKELS------------E 68 (126)
T ss_pred EEECCCccHHHHHHHHHHhCCCcccEEC--CCCcEEEEEEHHHhhhhhcCcchhh-cccchhhhhhh------------h
Confidence 4568999999999999999999999997 5689999999999987653211100 00000000000 0
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr 965 (1359)
......+.|...+.++++++++.++++.|.+ +++||+|++|+++|+||+.|+++
T Consensus 69 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 69 KFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred hcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 0112334567778899999999999995554 66999998779999999999975
No 92
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.85 E-value=3.1e-08 Score=98.31 Aligned_cols=114 Identities=14% Similarity=0.109 Sum_probs=84.6
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCC-CeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRES-QYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGA 910 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d-~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~ 910 (1359)
..+++++++.++.+.|.+.+++.+||++ ++ ++++|+|+.+|+...+........ . .....
T Consensus 4 ~~v~~~~~i~~a~~~~~~~~~~~~~V~d--~~~~~~~Giv~~~dl~~~~~~~~~~~~----------------~-~~~~~ 64 (123)
T cd04627 4 IPVPSTASLFQAIEILGSGGIHRVAVTE--EESGEVIGILSQRRLVEFLWENARSFP----------------G-LDPLY 64 (123)
T ss_pred eecCCCCCHHHHHHHHhhCCcceEEEEe--CCCCcEEEEEEHHHHHHHHHHhHHhcc----------------c-hhhhh
Confidence 4568999999999999999999999998 44 789999999999886643211000 0 00000
Q ss_pred CcccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHH
Q psy9748 911 PPILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIV 964 (1359)
Q Consensus 911 ~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDIL 964 (1359)
.......++|...+.++++++++.++++.|.+ +++||+|++|+++|+||+.|+-
T Consensus 65 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 65 PIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred hhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 01123345778888899999999999994444 6799999877999999999974
No 93
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.85 E-value=2.1e-08 Score=97.33 Aligned_cols=103 Identities=10% Similarity=0.077 Sum_probs=84.3
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..++++++++++.+.+.+++++.+||++ ++++++|+++.+|+........ .
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~~G~v~~~dl~~~~~~~~---------------------------~ 54 (111)
T cd04626 4 PTIDEDASIREALHEMLKYNTNEIIVKD--NEEKLKGVVTFTDILDLDLFES---------------------------F 54 (111)
T ss_pred eEECCCccHHHHHHHHHHhCCCeEEEEc--CCCCEEEEEehHHhHHHHhhcc---------------------------c
Confidence 3468899999999999999999999997 5689999999999986532100 0
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
....+.++|++.+.++.+++++.++++ .|. +.+||+|+ |+++|+||++|+++
T Consensus 55 ~~~~v~~~~~~~~~~v~~~~~l~~~~~-~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 55 LEKKVFNIVSQDVFYVNEEDTIDEALD-IMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred ccCcHHHHhcCCcEEEcCCCcHHHHHH-HHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 123577888888899999999999999 555 56899988 69999999999874
No 94
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.83 E-value=3.3e-08 Score=97.58 Aligned_cols=116 Identities=18% Similarity=0.250 Sum_probs=87.7
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..++++++++++.+.+.+++++++||++ + ++++|+++.+||...+........ .....+ ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~-~~~~G~v~~~~l~~~~~~~~~~~~----~~~~~~------------~~ 64 (122)
T cd04637 4 VTVEMDDRLEEVREIFEKHKFHHLLVVE--D-NELVGVISDRDYLKAISPFLGTAG----ETEKDL------------AT 64 (122)
T ss_pred eEeCCCCCHHHHHHHHHhCCCCEEEEEe--C-CeEEEEEEHHHHHHHHHHHhcccc----chHHHH------------HH
Confidence 4568999999999999999999999998 3 799999999999887643110000 000000 00
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRF 966 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~ 966 (1359)
...++.++|++.++++++++++.++++.|.+ +.+||+|++|+++|++|++|+++|
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 65 LNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred HHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence 1235788899999999999999999994433 568999887799999999999874
No 95
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.83 E-value=4e-08 Score=95.35 Aligned_cols=105 Identities=13% Similarity=0.137 Sum_probs=82.6
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..+++++++.++.+.+.+++.+.+||.+ +++++|+++.+|+...+...... .
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~G~v~~~dl~~~~~~~~~~-------------------------~ 55 (112)
T cd04625 4 YTVAPETLLSEAVATMAEQDLGSLVVME---RGELVGLLTFREVLQAMAQHGAG-------------------------V 55 (112)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeEEEee---CCEEEEEEEHHHHHHHHHhcCCc-------------------------h
Confidence 4568999999999999888877776664 48999999999998765321000 1
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr 965 (1359)
....++++|+..+.+++++++++++++.|.+ +.+||+|+ |+++|+||++|+++
T Consensus 56 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~-~~~~Gvvt~~dl~~ 111 (112)
T cd04625 56 LDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG-GTLLGVISFHDVAK 111 (112)
T ss_pred hcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC-CEEEEEEEHHHhhc
Confidence 1235788998888999999999999994444 56999986 59999999999986
No 96
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.82 E-value=2.5e-08 Score=98.06 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=87.3
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..+++++++.++.+.|.+.+++.+||++ + ++++|+++.+|+...+....... +. .. .....
T Consensus 4 ~~i~~~~~~~~~~~~l~~~~~~~i~V~~--~-~~~~G~v~~~~l~~~~~~~~~~~----------~~----~~--~~~~~ 64 (121)
T cd04633 4 ITVSPDDRVSHARRLMLDHDISRLPVIE--G-GKLVGIVTEKDIADALRSFRPLV----------RD----RH--QERRI 64 (121)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeeEEEE--C-CEEEEEEchHHHHHhhhhhhhcc----------cc----hh--hhhhh
Confidence 3568899999999999999999999997 3 89999999999987654211100 00 00 00011
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRF 966 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~ 966 (1359)
...++.++|++.+.++++++++.++++ +|. +++||+|+ |+++|+||++|++++
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~-~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 65 RNLPVSDIMTRPVITIEPDTSVSDVAS-LMLENNIGGLPVVDD-GKLVGIVTRTDILRY 121 (121)
T ss_pred hccCHHHHccCCceEECCCCcHHHHHH-HHHHcCCCcccEEEC-CEEEEEEEHHHhhcC
Confidence 234677889999999999999999999 665 56899998 699999999999863
No 97
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.82 E-value=2.9e-08 Score=95.29 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=82.0
Q ss_pred EeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCCc
Q psy9748 833 LTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPP 912 (1359)
Q Consensus 833 iv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~~ 912 (1359)
+++++.+++++.+.|.+.+++.+||++ ++++++|+++.+|+.....
T Consensus 5 ~v~~~~~~~~a~~~~~~~~~~~~~v~d--~~g~~~Giv~~~dl~~~~~-------------------------------- 50 (106)
T cd04582 5 TVRPDDPLSDALGLMDDSDLRALTVVD--ADGQPLGFVTRREAARASG-------------------------------- 50 (106)
T ss_pred EecCCCcHHHHHHHHHhcCCCEEEEEC--CCCCEEEEEeHHHHHHhcc--------------------------------
Confidence 567889999999999999999999997 5689999999999975420
Q ss_pred ccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 913 ILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 913 ~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr 965 (1359)
..+.++|++.+.++++++++.++++.|.+ ..+||+|++|+++|+||++|+++
T Consensus 51 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 51 -GCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred -cchhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 12557787778889999999999995555 56899998789999999999975
No 98
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.82 E-value=3.4e-08 Score=95.34 Aligned_cols=103 Identities=20% Similarity=0.339 Sum_probs=85.2
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..++++.++.++.+.|.+.+++.+||++ + ++++|+++++||........ .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~-~~~~G~v~~~dl~~~~~~~~---------------------------~ 53 (111)
T cd04612 4 VTVPVDLTVDEVLALMFGERHRGYPVVD--D-GRLVGIVTLADIRRVPAEGR---------------------------E 53 (111)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCcceEee--C-CeEEEEEEHHHHHHHHhcCc---------------------------c
Confidence 4568899999999999999999999998 3 89999999999986542110 0
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
...++.+.|.+.+.++++++++.++++ +|+ +++||+|+.|+++|+||++|+++
T Consensus 54 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 54 ATVLVGDVMTRDPVTASPDETLRDALK-RMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred cccCHHHhccCCCeEECCCCCHHHHHH-HHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 113567888888999999999999999 666 56999988779999999999976
No 99
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.82 E-value=2e-08 Score=96.81 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=81.8
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..++.++++.++.+.+.+++++++||++ ++++++|+++.+|+.... .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~~G~v~~~~l~~~~-------------------------------~ 51 (110)
T cd04601 5 ITVSPDATVAEALELMAEYGISGLPVVD--DDGKLVGIVTNRDLRFET-------------------------------D 51 (110)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEc--CCCEEEEEEEhhHeeecc-------------------------------c
Confidence 3568889999999999999999999997 568999999999885321 0
Q ss_pred cccccccccccCCeEecC-CCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITD-QTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~-~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
....+.++|+..+..+.+ ++++.++++ +|+ +.+||+|++|+++|+||++|+++
T Consensus 52 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 52 LDKPVSEVMTPENLLTTVEGTSLEEALE-LLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCCHHHhcccCceEEecCCCCHHHHHH-HHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 123577888877777777 999999999 555 56899998779999999999985
No 100
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.81 E-value=3.1e-08 Score=96.71 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=81.2
Q ss_pred EeCCCCCHHHHHHHHHhcC-CCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 833 LTQDSMTVQDVETLLKETE-HNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 833 iv~~~~TV~el~~lL~~~~-~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
.+++++++.++.+.+.+++ ...+||++ +++++|+++.+|+...+..... .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~G~v~~~dl~~~~~~~~~--------------------------~ 55 (115)
T cd04620 5 TVTPDTPVADAIALMSQQGDSSCVLVVE---KGRLLGIFTERDIVRLTAIGKD--------------------------L 55 (115)
T ss_pred EeCCCCcHHHHHHHHHhcCCCceEEEcC---CCcEEEEEeHHHHHHHHhcCCC--------------------------c
Confidence 4678999999999998887 56677665 4789999999999876532100 1
Q ss_pred cccccccccccCCeEecCC--CCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQ--TPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~--tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
....+.++|.+.+++++++ +++.++++ .|. +.+||+|++|+++|+||++|+++
T Consensus 56 ~~~~i~~~~~~~~~~v~~~~~~~l~~a~~-~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 56 SDLPIGEVMTQPVVTLQESEIQDIFTALS-LFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred cccCHHHhcCCCcEEEecccccCHHHHHH-HHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 1245778888888889887 78999999 555 57999998789999999999986
No 101
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.81 E-value=4.7e-08 Score=94.36 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=84.9
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..++++++++++.+.|.+++++.+||++ + ++++|+++.+||........ .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~-~~~~G~v~~~~l~~~~~~~~---------------------------~ 53 (111)
T cd04611 4 LTCPPDTSLAEAASRMRERRISSIVVVD--D-GRPLGIVTERDILRLLASGP---------------------------D 53 (111)
T ss_pred eEECCCCcHHHHHHHHHHcCCCEEEEee--C-CEEEEEEeHHHHHHHHhcCC---------------------------C
Confidence 3468999999999999999999999997 3 89999999999987652110 0
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr 965 (1359)
....+.++|.+.++++++++++.++++.|-+ +.+||+|+.|+++|+||++|+++
T Consensus 54 ~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 1245778888889999999999999994433 46899988779999999999975
No 102
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.81 E-value=3.5e-08 Score=96.58 Aligned_cols=102 Identities=15% Similarity=0.234 Sum_probs=82.4
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeC-CCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSR-ESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGA 910 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~-~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~ 910 (1359)
..+.+++++.++.+.|.+.+++.+||+|+. ++++++|+++.+|+.....
T Consensus 5 ~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~------------------------------ 54 (114)
T cd04602 5 SVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD------------------------------ 54 (114)
T ss_pred eEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc------------------------------
Confidence 356789999999999998888999999732 1689999999999864310
Q ss_pred CcccccccccccCCeEecC--CCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 911 PPILRLDKILDMAPITITD--QTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 911 ~~~idL~~iMd~sPiTV~~--~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
...+++++|++.+.++.. ++++.++++ .|+ +++||+|+.|+++|+||++|+++
T Consensus 55 -~~~~v~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 55 -SETPLSEVMTPREVLVVAPTGITLEEANE-ILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred -cCCCHHHhcCCCceEEECCCCCCHHHHHH-HHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 013477889888888866 999999999 555 67999998779999999999875
No 103
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.81 E-value=4e-08 Score=95.19 Aligned_cols=104 Identities=21% Similarity=0.320 Sum_probs=82.9
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCC-CeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCC
Q psy9748 831 SVLTQDSMTVQDVETLLKETEHNGFPVVVSRES-QYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPG 909 (1359)
Q Consensus 831 vviv~~~~TV~el~~lL~~~~~sgfPVVds~~d-~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~ 909 (1359)
++.++++++++++.+.|.+.+++.+||++ ++ ++++|+++.+||.....+..
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~--~~~~~~~G~v~~~~l~~~~~~~~-------------------------- 54 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVYD--GDLDNIIGVVHVKDLLRALAEGE-------------------------- 54 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEEC--CCCceEEEEEEHHHHHHHHHcCC--------------------------
Confidence 34578999999999999998999999997 44 89999999999988753210
Q ss_pred CCcccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 910 APPILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 910 ~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr 965 (1359)
....+.++++ .+.++++++++.++++.|.+ +++||+|+.|+++|+||++|+++
T Consensus 55 --~~~~~~~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 55 --EDLDLRDLLR-PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred --CcCCHHHHhc-CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 0023455554 57789999999999994443 67999998779999999999975
No 104
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.81 E-value=3.5e-08 Score=94.77 Aligned_cols=99 Identities=25% Similarity=0.358 Sum_probs=82.7
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..++.+.+++++.+.+.+.+++.+||++ + ++++|+++.+||... .
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~-~~~~g~v~~~~l~~~--------------------------------~ 49 (107)
T cd04610 5 ITVSPDNTVKDVIKLIKETGHDGFPVVD--N-GKVVGIVSARDLLGK--------------------------------D 49 (107)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeeeEeE--C-CEEEEEEEHHHhhcc--------------------------------C
Confidence 4568899999999999988888999997 4 899999999998642 0
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr 965 (1359)
....++++|+..+.++++++++.++++.|.+ +.+||++++|+++|+||++|+++
T Consensus 50 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 50 PDETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred ccccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 1135778898889999999999999994433 46899998889999999999986
No 105
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.81 E-value=2.8e-08 Score=96.71 Aligned_cols=97 Identities=39% Similarity=0.625 Sum_probs=81.0
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCC-CCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCC
Q psy9748 831 SVLTQDSMTVQDVETLLKETEHNGFPVVVSRE-SQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPG 909 (1359)
Q Consensus 831 vviv~~~~TV~el~~lL~~~~~sgfPVVds~~-d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~ 909 (1359)
...++++++++++.+.+.+.+++++||+++.. +++++|+|+++|+.....+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------------------- 55 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------------------- 55 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH----------------------------
Confidence 45678999999999999999999999997321 5899999999999765410
Q ss_pred CCcccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHH
Q psy9748 910 APPILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRF 966 (1359)
Q Consensus 910 ~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~ 966 (1359)
+|.+++.++++++++.++++ .|+ +++||+++ |+++|+||++|++++
T Consensus 56 ---------~m~~~~~~v~~~~~l~~~~~-~~~~~~~~~~pVv~~-~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 56 ---------YIDPSPFTVSPRTSLEKVHQ-LFRKLGLRHLLVVDE-GRLVGIITRKDLLKA 105 (105)
T ss_pred ---------hccCCCceECCCCcHHHHHH-HHHHcCCCEEEEEEC-CeEEEEEEhhhhhcC
Confidence 66777889999999999999 665 67899965 499999999999863
No 106
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.81 E-value=5e-08 Score=94.64 Aligned_cols=106 Identities=17% Similarity=0.255 Sum_probs=84.6
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..+.++++++++.+.|.+++.+.+||++ + ++++|+|+.+|+...+..... ..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~-~~~~G~v~~~dl~~~~~~~~~-------------------------~~ 55 (113)
T cd04587 4 ATVSPTTTVQEAAKLMREKRVSCVLVMD--G-NKLVGIFTSKDIALRVVAQGL-------------------------DP 55 (113)
T ss_pred eEeCCCCCHHHHHHHHHHcCCCeEEEEE--C-CEEEEEEEhHHHHHHHHhcCC-------------------------Cc
Confidence 3467889999999999988899999997 4 899999999999754421100 01
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr 965 (1359)
...++.++|++.+.++++++++.++++.+.+ +++||++++|+++|+||++|++.
T Consensus 56 ~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 56 ESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 1145788999999999999999999994444 57899988779999999999874
No 107
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.80 E-value=3.3e-08 Score=100.77 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=89.0
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
.++.++.++.++.+.|.+.+++.+||++ ++++++|+|+..||...+...... .....+ ..|..............
T Consensus 4 ~~v~~~~~~~~a~~~~~~~~~~~l~V~d--~~~~~~Giv~~~dl~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~ 78 (135)
T cd04621 4 ATVHPEHSLLHVVDEMEKNGVGRVIVVD--DNGKPVGVITYRDLAFAEFEDNER--GLPKKS-IKMKRKAGQKRYRYVKE 78 (135)
T ss_pred eEeCCCCcHHHHHHHHHHcCCCcceEEC--CCCCEEEEEeHHHHHHHhhccccc--ccchhh-hhhhhhccccccccccc
Confidence 3468899999999999999999999997 578999999999998866321100 000000 00110000000000111
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr 965 (1359)
...+++++|.+.+.++++++++.++++.|.+ +++||+++ |+++|+||++|+++
T Consensus 79 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 2346889999888999999999999994444 56999988 59999999999986
No 108
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.80 E-value=3.9e-08 Score=94.13 Aligned_cols=98 Identities=17% Similarity=0.218 Sum_probs=81.9
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..++++++++++.+.|.+++++.+||++ +++++|+++.+|+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~~~~Giv~~~~l~~~~-------------------------------- 48 (105)
T cd04599 4 ITIDPLDSVGRAARLMEKHRIGGLPVVE---DGKLVGIITSRDVRRAH-------------------------------- 48 (105)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEEE---CCEEEEEEehHHhhccc--------------------------------
Confidence 3468999999999999999999999996 47899999999997531
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr 965 (1359)
....+.++|++.+.++++++++.++++.|.+ +++||+|+ |+++|+||++|++.
T Consensus 49 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 49 PNRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred ccCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 0124678899999999999999999994444 67999998 69999999999973
No 109
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.80 E-value=2.7e-08 Score=98.03 Aligned_cols=114 Identities=19% Similarity=0.248 Sum_probs=86.6
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..+.+++++.++.+.+.+.+++.+||++ ++++++|+++++||.......... . +.. .....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~~G~v~~~~l~~~~~~~~~~------------~--~~~---~~~~~ 64 (122)
T cd04635 4 VTCTPDDPVSKVWDLMLESGFTGLPVVQ--KAGELIGIITRRDIIRAGSVRTSV------------E--DQQ---RTQTK 64 (122)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCcccEEC--CCCcEEEEEEcHHHHhhccccccc------------c--chh---hhhhh
Confidence 4568999999999999999999999997 578999999999998642100000 0 000 00001
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
....+.++|...+++++++++++++++ .|+ +++||+|+.|+++|+||++|+++
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~-~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMSTPVYSVTPDDSIATAVE-LMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcCCCeeECCCCCHHHHHH-HHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 234577889888999999999999999 555 57899998789999999999986
No 110
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.80 E-value=1.6e-08 Score=121.23 Aligned_cols=121 Identities=17% Similarity=0.236 Sum_probs=102.0
Q ss_pred cccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccc
Q psy9748 815 TALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSI 894 (1359)
Q Consensus 815 ~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~ 894 (1359)
...+.++|+.. .+++++..++.++.+.|.+.+.+..-+++ +++..+|+||++||....-..
T Consensus 148 ~trv~~~~~~~-----~~~v~~~~~i~~aa~km~~~gv~s~v~l~--~~~~~~GIvT~~dl~~~v~~~------------ 208 (610)
T COG2905 148 LTRVGEVKTLP-----AVTVSPQASIQDAARKMKDEGVSSLVVLD--DSGPLLGIVTRKDLRSRVIAD------------ 208 (610)
T ss_pred HHHHHHHhcCC-----CcccCccCcHHHHHHHHHhcCCCeEEEEc--CCCCccceeehHHHHHHHHhc------------
Confidence 45688888876 24679999999999999999999888887 677899999999999876431
Q ss_pred eecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhh
Q psy9748 895 VRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQN 969 (1359)
Q Consensus 895 v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~ 969 (1359)
+.+...+++++|+.+|++|+.++.+-+|+-.|.+ +|+||+++| +++||||.+||++....
T Consensus 209 --------------g~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~g-q~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 209 --------------GRSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDG-QPLGILTLTDILRLFSQ 271 (610)
T ss_pred --------------CCCcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecCC-eeeEEeeHHHHHHhhCC
Confidence 2234578999999999999999999999995555 889999988 99999999999997643
No 111
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.79 E-value=6.1e-08 Score=94.02 Aligned_cols=104 Identities=17% Similarity=0.253 Sum_probs=84.4
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
+.++++.++.++.+.|.+.+++.+||++ + ++++|+++.+|+...+..... ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~-~~~~G~v~~~dl~~~~~~~~~-------------------------~~ 55 (112)
T cd04802 4 ITVDPDTTVYEAANIMTENNIGRLIVVD--N-EKPVGIITERDLVKKVVSRNL-------------------------KP 55 (112)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEEE--C-CEEEEEEEHHHHHHHHhhccC-------------------------Cc
Confidence 4568999999999999999999999997 2 399999999999976532100 01
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
....+.++|++.+.++++++++.++++ .|. +.+||+|++ +++|+||++|+++
T Consensus 56 ~~~~~~~~~~~~~~~v~~~~~l~~~~~-~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMSTPLITIDPNASLNEAAK-LMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCCCcEEECCCCCHHHHHH-HHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 224577889888899999999999999 555 568999987 9999999999975
No 112
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.79 E-value=2.5e-08 Score=96.73 Aligned_cols=97 Identities=25% Similarity=0.279 Sum_probs=80.1
Q ss_pred CCCCCHHHHHHHHHhcC-----CCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCC
Q psy9748 835 QDSMTVQDVETLLKETE-----HNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPG 909 (1359)
Q Consensus 835 ~~~~TV~el~~lL~~~~-----~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~ 909 (1359)
.+++++.++.+.|.+++ +..+||++ ++++++|+|+.+|+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd--~~~~~~G~v~~~~l~~~------------------------------- 49 (109)
T cd04606 3 REDWTVGEALEYLRRNADDPETIYYIYVVD--EEGRLLGVVSLRDLLLA------------------------------- 49 (109)
T ss_pred cccCcHHHHHHHHHhccCcccceeEEEEEC--CCCCEEEEEEHHHHhcC-------------------------------
Confidence 57889999999998877 36789997 56789999999988641
Q ss_pred CCcccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHH
Q psy9748 910 APPILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRF 966 (1359)
Q Consensus 910 ~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~ 966 (1359)
....+++++|++.+.++++++++.++++ .+. +.+||+|++|+++|+||++|+++.
T Consensus 50 -~~~~~v~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 50 -DPDTPVSDIMDTDVISVSADDDQEEVAR-LFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred -CCcchHHHHhCCCCeEEcCCCCHHHHHH-HHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 0123577888888999999999999999 555 568999977799999999999875
No 113
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.79 E-value=5.5e-08 Score=94.32 Aligned_cols=105 Identities=16% Similarity=0.197 Sum_probs=84.2
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
+.++++++++++.+.|.+.+++.+||++ + ++++|+++.+|+...+..... .
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~-~~~~G~v~~~~l~~~~~~~~~--------------------------~ 54 (111)
T cd04589 4 LIVDASTSIRDAARLMREHGADALLVRD--G-DPRLGIVTRTDLLDAVLLDGL--------------------------P 54 (111)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEec--C-CeEEEEEEHHHHHHHHHcCCC--------------------------C
Confidence 3458899999999999998899999997 3 689999999999876532100 1
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRF 966 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~ 966 (1359)
...++.++|++.+..+++++++.++++.|-+ +.+||+|+ |+++|+||++|++++
T Consensus 55 ~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~~ 111 (111)
T cd04589 55 SSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLSF 111 (111)
T ss_pred CCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhcC
Confidence 2245778898889999999999999994444 56899987 599999999999864
No 114
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.75 E-value=5.6e-08 Score=97.16 Aligned_cols=110 Identities=10% Similarity=0.081 Sum_probs=82.0
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHH--hhhhhccCCCCccceecccCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIA--NAKRTLEGLRGDSIVRFVQNDTQPQPLPG 909 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~--~~~~~~~~~~~~s~v~F~~~~~~p~~~~~ 909 (1359)
..+++++++.++.+.|.+++.+.+||++ ++++++|+|+.+|+..... ..... ..
T Consensus 4 ~~v~~~~~i~~a~~~~~~~~~~~~~V~d--~~~~~~Giv~~~dl~~~~~~~~~~~~----------------------~~ 59 (126)
T cd04640 4 IVIPADTSIDEALELMIKHGVRLLLVVD--SDDNFIGVITAVDLLGEEPIKRIQEG----------------------GI 59 (126)
T ss_pred eEECCCCcHHHHHHHHHHcCCcEEEEEc--CCCcEEEEEEHHHHhhChhhHHHHHc----------------------CC
Confidence 3568899999999999988889999997 5678999999999986321 00000 00
Q ss_pred CCcccccccccccCCeEe------cCCCCHHHHHHHhhc---ceeEEEcCC-CcEEEEEeHHHHHH
Q psy9748 910 APPILRLDKILDMAPITI------TDQTPMETVCGHTFT---KQLLFPANA-KRTLEGLRGDSIVR 965 (1359)
Q Consensus 910 ~~~~idL~~iMd~sPiTV------~~~tpLeeVle~mFr---R~LpVVdeg-GrLvGIITrkDILr 965 (1359)
.....+++++|++.+.++ .+++++.++++.|.+ +++||+|++ |+++|+||+.|+++
T Consensus 60 ~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 60 SRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred CchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 012345788998765433 378999999994444 679999975 79999999999975
No 115
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.74 E-value=6.4e-08 Score=92.78 Aligned_cols=89 Identities=15% Similarity=0.215 Sum_probs=76.1
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
+.+++++++.++.+.|.+.+.+.+||+| ++++++|+++.+|+....
T Consensus 4 ~~v~~~~~i~~a~~~~~~~~~~~~~V~d--~~~~~~Giv~~~dl~~~~-------------------------------- 49 (96)
T cd04614 4 PTVWEETPLPVAVRIMELANVKALPVLD--DDGKLSGIITERDLIAKS-------------------------------- 49 (96)
T ss_pred cEeCCCCcHHHHHHHHHHcCCCeEEEEC--CCCCEEEEEEHHHHhcCC--------------------------------
Confidence 4568999999999999999999999997 568999999999986421
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr 965 (1359)
.+.++++++++.++++.|.+ +++||+|++|+++|+||++|+++
T Consensus 50 -----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 50 -----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred -----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 06789999999999994444 67999998779999999999975
No 116
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.73 E-value=1.1e-07 Score=91.79 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=79.8
Q ss_pred EeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCCc
Q psy9748 833 LTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPP 912 (1359)
Q Consensus 833 iv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~~ 912 (1359)
.++++++++++.+.+.+.+++.+||++ + ++++|+++.+|+....
T Consensus 5 ~v~~~~~~~~~~~~~~~~~~~~~~V~d--~-~~~~G~v~~~~l~~~~--------------------------------- 48 (104)
T cd04594 5 KVKDYDKVYEAKRIMIENDLLSLPVVD--Y-NKFLGAVYLKDIENAT--------------------------------- 48 (104)
T ss_pred EECCCCCHHHHHHHHHHcCCcEEEEEE--C-CEEEEEEEHHHHhhhc---------------------------------
Confidence 458999999999999999999999998 4 8999999999987431
Q ss_pred ccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 913 ILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 913 ~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr 965 (1359)
..++.++|.+.+.++++++++.++++.|-+ +.+||+|+ |+++|+||++|+++
T Consensus 49 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~iGvit~~dl~~ 103 (104)
T cd04594 49 YGDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD-GKFKGIVTLDSILD 103 (104)
T ss_pred ccchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC-CEEEEEEEHHHhhc
Confidence 012556788889999999999999994434 56899986 59999999999875
No 117
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.73 E-value=9.7e-08 Score=90.82 Aligned_cols=105 Identities=25% Similarity=0.362 Sum_probs=85.7
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..++++.+++++.+.+.+.+++.+||++ ++++++|+++++|+...+..... .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~G~v~~~~l~~~~~~~~~--------------------------~ 55 (113)
T cd02205 4 VTVSPDDTVAEALRLMLEHGISGLPVVD--DDGRLVGIVTERDLLRALAEGGL--------------------------D 55 (113)
T ss_pred eEecCCCCHHHHHHHHHhcCCceEEEEC--CCCCEEEEEeHHHHHHHHHhccC--------------------------C
Confidence 3467899999999999999999999997 45899999999999876632110 0
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
....+.++|...+.++++++++.++++ .|+ .+++|+|++|+++|+||++|+++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 56 PLVTVGDVMTRDVVTVSPDTSLEEAAE-LMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred ccccHHHHhcCCceecCCCcCHHHHHH-HHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 111266788888999999999999999 665 56899998789999999999976
No 118
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.70 E-value=1.1e-07 Score=93.34 Aligned_cols=113 Identities=22% Similarity=0.209 Sum_probs=86.3
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..+++++++.++.+.+.+.+++.+||++ ++++++|+++.+||............ . ......
T Consensus 4 ~~~~~~~~l~~a~~~~~~~~~~~~~V~d--~~~~~~G~v~~~~l~~~~~~~~~~~~----------~-------~~~~~~ 64 (121)
T cd04584 4 VTITPTTTIAEALELMREHKIRHLPVVD--EEGRLVGIVTDRDLRDASPSPFTTLS----------E-------HELYLL 64 (121)
T ss_pred EEECCCCCHHHHHHHHHHcCCCcccEEC--CCCcEEEEEEHHHHHHHhhhhcccch----------h-------hhhhhh
Confidence 3567899999999999999999999998 46899999999999765422110000 0 000001
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
...+++++|++.+++++++++++++++ +|+ .++||+|+ |+++|+||++|+++
T Consensus 65 ~~~~v~~~~~~~~~~i~~~~~l~~~~~-~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 65 LKMPVKEIMTKDVITVHPLDTVEEAAL-LMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred cCcCHHHHhhCCCeEECCCCcHHHHHH-HHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 234678889999999999999999999 665 56899988 69999999999975
No 119
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.70 E-value=1.2e-07 Score=97.27 Aligned_cols=125 Identities=20% Similarity=0.267 Sum_probs=88.0
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCC----
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPL---- 907 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~---- 907 (1359)
+.+++++++.++.+.|.+.+++++||++ + ++++|+++++|+...+...... ......+...+.. .+...
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~Vvd--~-~~~~G~v~~~dl~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~ 76 (143)
T cd04634 4 ITCNADDTISDAARLLRENKISGAPVLD--G-GKLVGIVSESDILKLLVTHDPS-GNLWLPSPLELIE---LPLREFINW 76 (143)
T ss_pred EEecCCCCHHHHHHHHHHcCCCcceEeE--C-CeEEEEecHHHHHHHHHhccCc-cccccCCcceeee---ccchheeeh
Confidence 4568999999999999999999999998 3 7999999999998876432210 0000000000000 00000
Q ss_pred ------CCCCcccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 908 ------PGAPPILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 908 ------~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
.......++.++|++.+.++++++++.++++ .|+ +++||+++ |+++|+||++|+++
T Consensus 77 ~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~-~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 77 EETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAE-LMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHH-HHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 0001234677889999999999999999999 555 56999988 69999999999874
No 120
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.67 E-value=8.3e-08 Score=108.97 Aligned_cols=111 Identities=17% Similarity=0.162 Sum_probs=90.5
Q ss_pred ccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccce
Q psy9748 816 ALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIV 895 (1359)
Q Consensus 816 ~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v 895 (1359)
.+|+|+|.++. ...++++++++++.+.|.+.+++.+||+| ++++++|+|+.+|+...+....
T Consensus 155 ~~v~~im~~~~----~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd--~~g~~~Givt~~dl~~~~~~~~------------ 216 (268)
T TIGR00393 155 VKVKDLMQTTD----LPLIAPTTSFKDALLEMSEKRLGSAIVCD--ENNQLVGVFTDGDLRRALLGGG------------ 216 (268)
T ss_pred hhHHHHhCCCC----CCcCCCCCcHHHHHHHHhhcCCcEEEEEe--CCCCEEEEEEcHHHHHHHhcCC------------
Confidence 57899998751 23568999999999999999999999997 5689999999999987642100
Q ss_pred ecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEe
Q psy9748 896 RFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLR 959 (1359)
Q Consensus 896 ~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIIT 959 (1359)
....+++++|++.+.++++++++.++++.|.+ +++||+|++|+++|+|+
T Consensus 217 ---------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 217 ---------------SLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ---------------cccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 12245889999999999999999999994444 57999998889999985
No 121
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.64 E-value=2.4e-07 Score=89.28 Aligned_cols=99 Identities=25% Similarity=0.287 Sum_probs=80.7
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
+.++.++++.++.+.+.+.+++.+||++ ++++++|+++++++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~g~v~~~~l~~~~-------------------------------- 49 (106)
T cd04638 4 VYVTLPGTRDDVLELLKEYKVSGVPVVK--KSGELVGIITRKDLLRNP-------------------------------- 49 (106)
T ss_pred EEECCCCCHHHHHHHHHHcCCCeEEEEc--CCCcEEEEEEHHHHHhcc--------------------------------
Confidence 4567888999999999999999999997 458899999999986420
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr 965 (1359)
....+.++|++.+.+++++++++++++.|.+ +.+||+|++ +++|+||++|+++
T Consensus 50 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-~~~G~it~~d~~~ 105 (106)
T cd04638 50 EEEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDG-KLVGIVTVADIVR 105 (106)
T ss_pred ccchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEECC-EEEEEEEHHHhhc
Confidence 0123567788889999999999999994433 578999874 9999999999875
No 122
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.64 E-value=2.2e-08 Score=111.43 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=120.5
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCCcccc
Q psy9748 836 DSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILR 915 (1359)
Q Consensus 836 ~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~~~id 915 (1359)
.+.+-+|+.+.+++.+- .+| |+|+||...|.+.+... ......+++
T Consensus 201 vgfs~~Dld~aL~~~~E----~lD----------IdrddLe~llr~~elqa--------------------~~R~~~~Lt 246 (382)
T COG3448 201 VGFSSEDLDAALQRLGE----TLD----------IDRDDLERLLRETELQA--------------------LRRRMGELT 246 (382)
T ss_pred cCCCHHHHHHHHHhcCc----eec----------CCHHHHHHHHHHHHHHH--------------------HHHHhcccc
Confidence 46678888888877543 122 67899998886543220 111234578
Q ss_pred cccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q psy9748 916 LDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMA 992 (1359)
Q Consensus 916 L~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~ 992 (1359)
..++|+++.+++++++++.++.+.+-+ |.+||+|++.+++||||+.|+++.....-.+.. ...+..+++.+|+..
T Consensus 247 cadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrl--r~~~~~~vk~imt~~ 324 (382)
T COG3448 247 CADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRL--RFLRPPTVKGIMTTP 324 (382)
T ss_pred HHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHh--hccCCCcccccccCc
Confidence 999999999999999999999995544 679999999999999999999985433111100 011335688999999
Q ss_pred cEEecCCCCHHHHHHHHHHcC---CCcCCccchhHHHHHHHHHHHHHHh
Q psy9748 993 PITITDQTPMETVVDMYKKRS---ISVTNGQKEIFLMRFLWDRWETLGN 1038 (1359)
Q Consensus 993 ~~tV~~dtpLeel~~lm~~~g---I~lp~~~~~~tl~gli~eLl~~Ig~ 1038 (1359)
..++.+|+|..+++..+.+.+ +++-+++.++...--+.+++.++..
T Consensus 325 v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 325 VVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred ceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHH
Confidence 999999999999999999988 5555655554444445666666654
No 123
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.61 E-value=3.9e-07 Score=88.75 Aligned_cols=104 Identities=20% Similarity=0.324 Sum_probs=86.7
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCC
Q psy9748 831 SVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGA 910 (1359)
Q Consensus 831 vviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~ 910 (1359)
.+.+.++.++.++...|.++++...||++ .++++|+++.+|+..++.....
T Consensus 9 ~~~v~~~~~~~~a~~~m~~~~~~~~~v~~---~~~l~Giit~~di~~~~~~~~~-------------------------- 59 (117)
T COG0517 9 VITVKPDTSVRDALLLMSENGVSAVPVVD---DGKLVGIITERDILRALAAGGK-------------------------- 59 (117)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEee---CCEEEEEEEHHHHHHHHhccCC--------------------------
Confidence 35678999999999999999999999996 3489999999999998743211
Q ss_pred CcccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCC-cEEEEEeHHHHH
Q psy9748 911 PPILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAK-RTLEGLRGDSIV 964 (1359)
Q Consensus 911 ~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegG-rLvGIITrkDIL 964 (1359)
....+.++|++.++++.++++++++.+.|-+ +.+||+++++ +++|++|++|++
T Consensus 60 -~~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 60 -RLLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred -ccccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 0115788999899999999999999994432 4799999986 999999999973
No 124
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.61 E-value=3.1e-07 Score=90.06 Aligned_cols=107 Identities=18% Similarity=0.218 Sum_probs=82.9
Q ss_pred EeCCCCCHHHHHHHHHhcC-CCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 833 LTQDSMTVQDVETLLKETE-HNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 833 iv~~~~TV~el~~lL~~~~-~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
+++++++++++.+.+.+.+ ++.+||++ + ++++|+|+.+|+..++...... ...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~Vvd--~-~~~~G~v~~~~l~~~~~~~~~~-----------------------~~~ 58 (119)
T cd04598 5 TVSPDTTVNDVLERFERDPDLSALAVVD--D-GRPVGLIMREALMELLSTPYGR-----------------------ALY 58 (119)
T ss_pred ccCCCCcHHHHHHHHHhCCCccEEEEEE--C-CeeEEEEEHHHHHHHHhchhhH-----------------------HHH
Confidence 4578999999999998877 89999998 4 8999999999998765321000 001
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhcc------eeEEEcCCCcEEEEEeHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFTK------QLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFrR------~LpVVdegGrLvGIITrkDILr 965 (1359)
...++.++|++.+.++++++++.++++.|.++ ..+|+++.|+++|+||++|+++
T Consensus 59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 12457889999999999999999999944332 2367777779999999999975
No 125
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.56 E-value=1.3e-07 Score=114.16 Aligned_cols=120 Identities=21% Similarity=0.254 Sum_probs=102.0
Q ss_pred cccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcC-----CCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCC
Q psy9748 815 TALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETE-----HNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGL 889 (1359)
Q Consensus 815 ~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~-----~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~ 889 (1359)
.-+++.+|+++ ++.+++++|++++.+.+++.. ...+.|+| ++++++|+|+.++|+.+
T Consensus 131 e~taG~~Mt~e-----~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD--~~~~L~Gvvsl~~Ll~a----------- 192 (451)
T COG2239 131 EDTAGRIMTTE-----FVTLPEDVTVDEALDRIRERAEDAETIYYLYVVD--EKGKLLGVVSLRDLLTA----------- 192 (451)
T ss_pred hhhhhccceee-----eEEeccCcCHHHHHHHHHHhcccccccceEEEEC--CccceEEEeeHHHHhcC-----------
Confidence 45699999997 688999999999999998543 35677887 67799999999999753
Q ss_pred CCccceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhcc----eeEEEcCCCcEEEEEeHHHHHH
Q psy9748 890 RGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFTK----QLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 890 ~~~s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFrR----~LpVVdegGrLvGIITrkDILr 965 (1359)
.+...++++|++.+++|++++..+++.+ .|++ .+||+|++++++|+||-+|+++
T Consensus 193 ---------------------~~~~~i~~im~~~~~~V~~~~dqeevA~-~~~~ydl~a~PVVd~~~~LiG~itiDDiid 250 (451)
T COG2239 193 ---------------------EPDELLKDLMEDDVVSVLADDDQEEVAR-LFEKYDLLAVPVVDEDNRLIGIITIDDIID 250 (451)
T ss_pred ---------------------CcHhHHHHHhcccceeecccCCHHHHHH-HHHHhCCeecceECCCCceeeeeeHHHHHH
Confidence 2346789999999999999999999999 8883 4899999999999999999999
Q ss_pred HHhhccCCC
Q psy9748 966 FVQNDTQPQ 974 (1359)
Q Consensus 966 ~l~~~~~~~ 974 (1359)
.+.++..++
T Consensus 251 vi~eEa~eD 259 (451)
T COG2239 251 VIEEEATED 259 (451)
T ss_pred HHHHHHHHH
Confidence 998765544
No 126
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.17 E-value=3.8e-06 Score=72.69 Aligned_cols=52 Identities=12% Similarity=0.244 Sum_probs=47.1
Q ss_pred cccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHh
Q psy9748 916 LDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQ 968 (1359)
Q Consensus 916 L~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~ 968 (1359)
++++|+++++++++++++.++++ .|+ +++||+|++|+++|+||++|+++++.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~-~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALE-IMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHH-HHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHH-HHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 36789999999999999999999 666 77999998899999999999999874
No 127
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.08 E-value=1.8e-05 Score=81.08 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=71.8
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
..++++++++++.+.|.+.+++.+||+| ++++++|+|+.+||..++.......... .+ .+ +. .
T Consensus 4 ~~v~~~~~l~ea~~~m~~~~~~~~~VvD--~~g~l~Givt~~Dl~~~~~~~~~~~~~~-~~-~~-~~------------~ 66 (133)
T cd04592 4 IKVSPTTTLKEALNLMLDEKQSCVLVVD--SDDFLEGILTLGDIQRFLFTNKTTRVQP-ED-ET-KQ------------T 66 (133)
T ss_pred eEECCCCCHHHHHHHHHHcCCCEEEEEC--CCCeEEEEEEHHHHHHHHhhcccccccc-ch-hh-cc------------c
Confidence 4578999999999999999999999997 5689999999999998774321110000 00 00 00 0
Q ss_pred cccccccc---------cccCCeEecCCCCHHHHHHHhhc---ceeEEEcCC
Q psy9748 912 PILRLDKI---------LDMAPITITDQTPMETVCGHTFT---KQLLFPANA 951 (1359)
Q Consensus 912 ~~idL~~i---------Md~sPiTV~~~tpLeeVle~mFr---R~LpVVdeg 951 (1359)
....+.++ |..+++++++++++.+|++.|.+ +++||+|++
T Consensus 67 ~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 67 NTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred ccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 11122334 35668899999999999994444 679999865
No 128
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.06 E-value=9.7e-06 Score=89.70 Aligned_cols=94 Identities=11% Similarity=0.198 Sum_probs=83.4
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCcccccc
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDK 987 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~ 987 (1359)
+...+.++|.+.++++.+++++.++.. .|- |-.||+|++ +++|++|..|+.+.+.+- ....++++
T Consensus 170 Pk~~V~~~~s~~~i~v~~d~tl~eaak-~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g---------~~~~kV~~ 238 (294)
T COG2524 170 PKEKVKNLMSKKLITVRPDDTLREAAK-LFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANG---------NLDAKVSD 238 (294)
T ss_pred CcchhhhhccCCceEecCCccHHHHHH-HHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcC---------CccccHHH
Confidence 456799999999999999999999999 666 678999999 999999999999998653 12357899
Q ss_pred ccccccEEecCCCCHHHHHHHHHHcCCCc
Q psy9748 988 ILDMAPITITDQTPMETVVDMYKKRSISV 1016 (1359)
Q Consensus 988 im~~~~~tV~~dtpLeel~~lm~~~gI~l 1016 (1359)
+|...++++..|+.+.|+.+.|..+++..
T Consensus 239 ~M~k~vitI~eDe~i~dAir~M~~~nVGR 267 (294)
T COG2524 239 YMRKNVITINEDEDIYDAIRLMNKNNVGR 267 (294)
T ss_pred HhccCCceEcCchhHHHHHHHHHhcCcce
Confidence 99999999999999999999999998754
No 129
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=97.95 E-value=1.4e-05 Score=69.18 Aligned_cols=56 Identities=25% Similarity=0.437 Sum_probs=49.9
Q ss_pred ccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHH
Q psy9748 818 ASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIA 880 (1359)
Q Consensus 818 V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~ 880 (1359)
|+|+|+++ +..+++++++.++.+.|.+++++.+||+| ++++++|+|+++||+.++.
T Consensus 1 v~~~m~~~-----~~~v~~~~~l~~~~~~~~~~~~~~~~V~d--~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPP-----PITVSPDDSLEEALEIMRKNGISRLPVVD--EDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSS-----SEEEETTSBHHHHHHHHHHHTSSEEEEES--TTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCC-----CEEEcCcCcHHHHHHHHHHcCCcEEEEEe--cCCEEEEEEEHHHHHhhhh
Confidence 57899985 35678999999999999999999999997 6799999999999998863
No 130
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.88 E-value=1.7e-05 Score=95.83 Aligned_cols=235 Identities=16% Similarity=0.169 Sum_probs=146.2
Q ss_pred cccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccc
Q psy9748 914 LRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILD 990 (1359)
Q Consensus 914 idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~ 990 (1359)
..+.+.++.+|++|++++|+.+|.++|.. ..++|+++.+.+.||||++|+...+..+- ...-.++..+|+
T Consensus 149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g-------~~~~~~V~evmT 221 (610)
T COG2905 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADG-------RSKTQKVSEVMT 221 (610)
T ss_pred HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcC-------CCcccchhhhhc
Confidence 46788999999999999999999997766 55778888789999999999998765432 222356788999
Q ss_pred cccEEecCCCCHHHHHHHHHHcCCCcCCccchhHHHHHH--HHHHHHHHhhccCCCcccceeccccccccccC--Cccce
Q psy9748 991 MAPITITDQTPMETVVDMYKKRSISVTNGQKEIFLMRFL--WDRWETLGNKLGIPDCMKDVHKAHRVNTLAKN--KIKPI 1066 (1359)
Q Consensus 991 ~~~~tV~~dtpLeel~~lm~~~gI~lp~~~~~~tl~gli--~eLl~~Ig~~~ni~~~~~~I~k~~Ri~~~~~~--~~~~i 1066 (1359)
.+++.|+.++.+-++.-+|.+++|......+.....|++ .+++....+ +......++.+++-|..+.+. ....+
T Consensus 222 ~p~~svd~~~~~feAml~m~r~~I~hl~V~e~gq~~Gilt~~dIl~l~s~--~~~vl~~~i~~a~sI~el~~~~e~~~~~ 299 (610)
T COG2905 222 SPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDILRLFSQ--NSIVLVKRIARASSIEELANTAELLDDS 299 (610)
T ss_pred cCceeecCcchHHHHHHHHHHhCCceeeeecCCeeeEEeeHHHHHHhhCC--CceeehHHhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999997765432222222222 222222221 111111222222222211110 01112
Q ss_pred EEeeecccccccccccccccccchhhcccchHhHHHHHHHHHHHHHhhh-hcCc---cceeecccc----hhhhcccccc
Q psy9748 1067 VVRLSNTSVRDKWTTASRSKQLYKEKIYINEHLTKANQDLLFKAKKLKE-ANGY---KFVWVRDCK----IMIRKNESSR 1138 (1359)
Q Consensus 1067 iv~~~~~~~~~~~~~~~~~~~~~~~~iyiNe~Lt~~~~~L~~~a~~~~k-~~~~---k~~w~~~~~----i~~rk~~~~~ 1138 (1359)
++.+.++. .+..++|+=+|..+.+|..++.+.+. ++|- .|+|+-.|+ ...-+++.|.
T Consensus 300 ~s~L~~~g---------------v~~~~i~~lit~i~d~lv~r~leL~~~~~g~~pv~fcfvvmGS~GR~EQ~l~TDQDn 364 (610)
T COG2905 300 LSTLVSRG---------------VRTEFISELITEINDQLVQRALELVEPEFGAEPVPFCFVVMGSEGRGEQLLKTDQDN 364 (610)
T ss_pred HHHHHhCC---------------CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCceEEEEEccCCCccccccccCCc
Confidence 22222222 24458899999999999999887664 3443 699987665 3455677777
Q ss_pred eeeeccccccccccccCcchhhhhhhhhHhhhhhheee
Q psy9748 1139 IYVIRNVRDLETYMTLVPPQLSRSLQEVSVFLDFAGYT 1176 (1359)
Q Consensus 1139 ~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1176 (1359)
++...+.-+=.++ ...|.+=...++=.|+-++|-
T Consensus 365 aLv~~d~~~d~~~----~~yf~~f~E~v~~~L~k~Gyp 398 (610)
T COG2905 365 ALVYDDTYDDAKH----QAYFLAFGEEVCEGLDKAGYP 398 (610)
T ss_pred eeEecCCCCchhh----HHHHHHHHHHHHHHHHHcCCC
Confidence 7655543331112 223444444556666666665
No 131
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.87 E-value=5.5e-05 Score=74.74 Aligned_cols=93 Identities=11% Similarity=0.041 Sum_probs=65.3
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecC
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITD 998 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~ 998 (1359)
+..++++++++.++.+ ++. +.+||+|++|+++|++|++|++++..+...+.............+.+..++.++.+
T Consensus 2 ~~~~i~~~~~l~~a~~-~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (120)
T cd04641 2 NIATARPDTPLIDVLD-MLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSP 80 (120)
T ss_pred CcEEEcCCCCHHHHHH-HHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcC
Confidence 3568999999999999 555 57899988889999999999998653322111110000001122344556789999
Q ss_pred CCCHHHHHHHHHHcCCCc
Q psy9748 999 QTPMETVVDMYKKRSISV 1016 (1359)
Q Consensus 999 dtpLeel~~lm~~~gI~l 1016 (1359)
+++++++.+.|.+.+++.
T Consensus 81 ~~~l~~~~~~m~~~~~~~ 98 (120)
T cd04641 81 DDCLRTIFDLIVKARVHR 98 (120)
T ss_pred CCcHHHHHHHHHhcCccE
Confidence 999999999999987543
No 132
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.83 E-value=5.5e-05 Score=88.84 Aligned_cols=98 Identities=7% Similarity=0.092 Sum_probs=78.0
Q ss_pred ccccccccccc--CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccc
Q psy9748 912 PILRLDKILDM--APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLD 986 (1359)
Q Consensus 912 ~~idL~~iMd~--sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~ 986 (1359)
..+.++++|++ +++++++++++.++.+.|.+ +.++|+|++|+++|+||.+|+.+...... .....+++
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~-------~~~~~~v~ 272 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI-------DLRQASIA 272 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC-------CcccCCHH
Confidence 45679999997 88999999999999994433 44677787789999999999987543210 11123577
Q ss_pred cccccccEEecCCCCHHHHHHHHHHcCCCc
Q psy9748 987 KILDMAPITITDQTPMETVVDMYKKRSISV 1016 (1359)
Q Consensus 987 ~im~~~~~tV~~dtpLeel~~lm~~~gI~l 1016 (1359)
++|...+.++.+++++.++++.|.++++..
T Consensus 273 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~ 302 (326)
T PRK10892 273 DVMTPGGIRVRPGILAVDALNLMQSRHITS 302 (326)
T ss_pred HhcCCCCEEECCCCCHHHHHHHHHHCCCcE
Confidence 899999999999999999999999988654
No 133
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.77 E-value=0.00016 Score=74.22 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=66.6
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCC----CCCccccccc-------
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPG----APPILRLDKI------- 988 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~----~~~~~rv~~i------- 988 (1359)
.++++++++++.++++.|.+ ..+||+|++|+++|+||.+|++++.......+.... ......+.++
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 81 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY 81 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence 46789999999999995543 578999988899999999999998754322110000 0000112223
Q ss_pred --cccccEEecCCCCHHHHHHHHHHcCCC
Q psy9748 989 --LDMAPITITDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 989 --m~~~~~tV~~dtpLeel~~lm~~~gI~ 1015 (1359)
|...+.++.+++++.++++.|.+++++
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~ 110 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVK 110 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCC
Confidence 345688999999999999999999876
No 134
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.77 E-value=0.00017 Score=87.09 Aligned_cols=120 Identities=17% Similarity=0.180 Sum_probs=91.5
Q ss_pred ccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccce
Q psy9748 816 ALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIV 895 (1359)
Q Consensus 816 ~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v 895 (1359)
.++.++|.+... ..+...++.+..++.+.|...+.+...|+| ++++++|+|+.+++......
T Consensus 274 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~-------------- 335 (400)
T PRK10070 274 FSAKDIARRTPN--GLIRKTPGFGPRSALKLLQDEDREYGYVIE--RGNKFVGAVSIDSLKTALTQ-------------- 335 (400)
T ss_pred cchhhhhhcCcc--cccccCCCCCHHHHHHHHHhcCCceEEEEc--CCCcEEEEEeHHHHHhhhhc--------------
Confidence 346677754211 011234667889999999999999999998 67899999999999765421
Q ss_pred ecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc--ceeEEEcCCCcEEEEEeHHHHHHHHhhc
Q psy9748 896 RFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT--KQLLFPANAKRTLEGLRGDSIVRFVQND 970 (1359)
Q Consensus 896 ~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr--R~LpVVdegGrLvGIITrkDILr~l~~~ 970 (1359)
...+.+.+++...++++++++.+++..+.. ..+||+|++|+++|+||+.++++.+.+.
T Consensus 336 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 336 -----------------QQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCAVPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred -----------------CCchhhhhccCCceeCCCCCHHHHHHHHHhCCCcEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 013555667777899999999999995555 4599999888999999999999998653
No 135
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.74 E-value=4.1e-05 Score=79.41 Aligned_cols=98 Identities=10% Similarity=0.221 Sum_probs=83.6
Q ss_pred ccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccc
Q psy9748 913 ILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKI 988 (1359)
Q Consensus 913 ~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~i 988 (1359)
.+..+.+|+.+.+.++++++++++++ +++ .++||++++ +++|-||..|+.+..-+.. +.....+++++
T Consensus 64 ~ita~~iM~spvv~v~pdDsi~~vv~-lM~~~g~SQlPVi~~~-k~VGsItE~~iv~~~le~~------e~i~~~~vr~v 135 (187)
T COG3620 64 RITAKTIMHSPVVSVSPDDSISDVVN-LMRDKGISQLPVIEED-KVVGSITENDIVRALLEGM------ESIRSLRVREV 135 (187)
T ss_pred eEeHhhhccCCeeEECchhhHHHHHH-HHHHcCCccCceeeCC-eeeeeecHHHHHHHHhccc------cchhhhhHHHH
Confidence 46788999999999999999999999 666 689999996 9999999999999875543 12235688999
Q ss_pred cccccEEecCCCCHHHHHHHHHHcCCCcCC
Q psy9748 989 LDMAPITITDQTPMETVVDMYKKRSISVTN 1018 (1359)
Q Consensus 989 m~~~~~tV~~dtpLeel~~lm~~~gI~lp~ 1018 (1359)
|..+..+|+++++++.+.+++.++..-+..
T Consensus 136 M~e~fP~Vs~~~~l~vI~~LL~~~~AVlV~ 165 (187)
T COG3620 136 MGEPFPTVSPDESLNVISQLLEEHPAVLVV 165 (187)
T ss_pred hcCCCCcCCCCCCHHHHHHHHhhCCeEEEE
Confidence 999999999999999999999988755543
No 136
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.72 E-value=0.00011 Score=71.09 Aligned_cols=69 Identities=7% Similarity=0.096 Sum_probs=57.7
Q ss_pred CeEecCCCCHHHHHHHhhc---ceeEEEcC-CCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCC
Q psy9748 924 PITITDQTPMETVCGHTFT---KQLLFPAN-AKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQ 999 (1359)
Q Consensus 924 PiTV~~~tpLeeVle~mFr---R~LpVVde-gGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~d 999 (1359)
.+++++++++.++.+.|.+ +.+||+|+ +|+++|+||.+|+.+... +.++.++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------~~~v~~~ 58 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------LVSIHPE 58 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------eEEeCCC
Confidence 5689999999999994433 57899986 479999999999987442 6789999
Q ss_pred CCHHHHHHHHHHcCCCc
Q psy9748 1000 TPMETVVDMYKKRSISV 1016 (1359)
Q Consensus 1000 tpLeel~~lm~~~gI~l 1016 (1359)
+++.++++.|.+++++.
T Consensus 59 ~~l~~a~~~m~~~~~~~ 75 (98)
T cd04618 59 RSLFDAALLLLKNKIHR 75 (98)
T ss_pred CcHHHHHHHHHHCCCCE
Confidence 99999999999987544
No 137
>PRK03655 putative ion channel protein; Provisional
Probab=97.70 E-value=4.2e-06 Score=101.31 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=74.6
Q ss_pred eEEEeecccccccccccccchhhhhhcceeeeeeeccCCCCccccccccccCCccCccceeeecccccccchhhhhhhhc
Q psy9748 1202 DIFTFLGKQFEGGLQLTFKHILSLSSHGMIVVCFYLNSPPSVSSLVWPKVSLSNLTAMQTRMVVCTSNDLTLLLTFLTLF 1281 (1359)
Q Consensus 1202 ~~~t~~~~~p~g~f~~~~~~ips~~~g~~~g~~~~~~~p~~~~~~~~~~~~~~~i~pg~ya~vg~a~~~~~~~~a~~~g~ 1281 (1359)
|.+|++.-.|.|.| .|++++|..+|..+...+|+ ++|....++||+ |+++++
T Consensus 312 t~ls~~sG~~GGiF------~PsL~iGA~~G~~~~~l~p~--------------~~~~~~v~~~m~--------a~la~v 363 (414)
T PRK03655 312 LVVAAASGFRGGRI------FPAVFVGVALGLMLHAHVPA--------------VPAAITVSCAIL--------GIVLVV 363 (414)
T ss_pred HHHHHccCCCCcee------hHHHHHHHHHHHHHHHhccC--------------CChHHHHHHHHH--------HHHHHH
Confidence 99999999999999 99999999999987666662 236677889999 999999
Q ss_pred cc----cchhheehhhhhcCCcchHHHHHHHHHHHHHHHh
Q psy9748 1282 GT----RDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGD 1317 (1359)
Q Consensus 1282 t~----~tiS~~vI~fElTg~~~~ilPlMia~~ia~~v~~ 1317 (1359)
|| .|++++||+.||| ++|+|++++++-|+.-
T Consensus 364 tr~p~~sp~ta~viv~em~-----~~~l~~~~~~~~~~~~ 398 (414)
T PRK03655 364 TRDGWLSLFMAAVVVPDTT-----LLPLLCIVMLPAWLLL 398 (414)
T ss_pred hccchhhHHHHHHHHhcch-----HHHHHHHHHHHHHHHH
Confidence 99 5999999999999 9999999999999854
No 138
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.67 E-value=0.00013 Score=85.37 Aligned_cols=95 Identities=6% Similarity=0.060 Sum_probs=78.0
Q ss_pred ccccccccccC--CeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCcccccc
Q psy9748 913 ILRLDKILDMA--PITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDK 987 (1359)
Q Consensus 913 ~idL~~iMd~s--PiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~ 987 (1359)
..+++++|++. ++++++++++.++.+.|-+ ..+||+|++|+++|+||.+|+.+.+.... . ....+.+
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~--~------~~~~v~~ 267 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGG--A------LTTPVNE 267 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCC--C------cCCcHHH
Confidence 46799999998 8999999999999994433 56899998889999999999988664311 1 1234678
Q ss_pred ccccccEEecCCCCHHHHHHHHHHcCCC
Q psy9748 988 ILDMAPITITDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 988 im~~~~~tV~~dtpLeel~~lm~~~gI~ 1015 (1359)
+|...+.++.++.+++++.+.|.++++.
T Consensus 268 im~~~~~~v~~~~~l~~a~~~m~~~~~~ 295 (321)
T PRK11543 268 AMTRGGTTLQAQSRAIDAKEILMKRKIT 295 (321)
T ss_pred hcCCCCEEECCCCCHHHHHHHHHHcCCC
Confidence 8999999999999999999999998764
No 139
>KOG1764|consensus
Probab=97.59 E-value=0.00038 Score=83.61 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=87.8
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCC
Q psy9748 831 SVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGA 910 (1359)
Q Consensus 831 vviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~ 910 (1359)
+..+.++.++.++.+.|.+.+++++|||+ ++++.+|.+++.|.............. -.+ -
T Consensus 239 i~~i~~~~~v~~al~~m~~~~is~lpvV~--~~g~~v~~~s~~Dv~~l~~~~~~~~~~----~~~-l------------- 298 (381)
T KOG1764|consen 239 IASISEDTPVIEALKIMSERRISALPVVD--ENGKKVGNYSRFDVIHLAREGTYNNLD----LSC-L------------- 298 (381)
T ss_pred heeecCCCcHHHHHHHHHhcCcCcceEEc--CCCceecceehhhhhhhhhcCccCccc----hhH-H-------------
Confidence 45568889999999999999999999998 566779999999999887543221000 000 0
Q ss_pred CcccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhc
Q psy9748 911 PPILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQND 970 (1359)
Q Consensus 911 ~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~ 970 (1359)
......+..-....+++.++.++.++++.+.. +++.|+|++|+++|+||..|++.++...
T Consensus 299 ~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 299 SEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred HHHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 00011111111226899999999999995555 6899999988999999999999998654
No 140
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.58 E-value=0.00057 Score=81.73 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=83.8
Q ss_pred eCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCCcc
Q psy9748 834 TQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPI 913 (1359)
Q Consensus 834 v~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~~~ 913 (1359)
..++.+..++.+.+...+.+...|++ +++++.|+|+.+++.......
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~------------------------------- 301 (363)
T TIGR01186 255 KTADKGPRSALQLMRDERVDSLYVVD--RQNKLVGVVDVESIKQARKKA------------------------------- 301 (363)
T ss_pred ecCCCCHHHHHHHHHhcCCceEEEEc--CCCCEEEEEeHHHHHHHhhcC-------------------------------
Confidence 35666889999999998888888887 678999999999987654211
Q ss_pred cccccccccCCeEecCCCCHHHHHHHhhc--ceeEEEcCCCcEEEEEeHHHHHHHHhhc
Q psy9748 914 LRLDKILDMAPITITDQTPMETVCGHTFT--KQLLFPANAKRTLEGLRGDSIVRFVQND 970 (1359)
Q Consensus 914 idL~~iMd~sPiTV~~~tpLeeVle~mFr--R~LpVVdegGrLvGIITrkDILr~l~~~ 970 (1359)
-.+.+.+.+...++++++++.+++..+.+ .-+||+|++|+++|+||+.++++.+.+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 302 QGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIKVPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred CchhhhhccCCceECCCCcHHHHHHHHHhCCCCEEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 13556667777789999999999995555 3399999888999999999999988653
No 141
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.57 E-value=0.00013 Score=89.48 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=78.2
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccc
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKI 988 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~i 988 (1359)
..++++++|++++.++++++++.++++.|-+ +.+||+|++++++|+||.+|+++.+.+... + ...++.++
T Consensus 333 ~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-~------~~~~v~~i 405 (454)
T TIGR01137 333 KNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKA-N------PDDAVSKV 405 (454)
T ss_pred ccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCC-C------cCCCHHHh
Confidence 3467899999999999999999999994433 468999988899999999999987653211 1 11246678
Q ss_pred cccccEEecCCCCHHHHHHHHHHcCCCc
Q psy9748 989 LDMAPITITDQTPMETVVDMYKKRSISV 1016 (1359)
Q Consensus 989 m~~~~~tV~~dtpLeel~~lm~~~gI~l 1016 (1359)
|...+..++++++++++.+.|.+.+..+
T Consensus 406 m~~~~~~v~~~~~l~~a~~~~~~~~~~v 433 (454)
T TIGR01137 406 MSKKFIQIGEGEKLSDLSKFLEKNSSAI 433 (454)
T ss_pred cCCCCeEECCcCcHHHHHHHHHHCCeeE
Confidence 8888889999999999999998876544
No 142
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.56 E-value=0.00036 Score=67.46 Aligned_cols=84 Identities=12% Similarity=0.258 Sum_probs=67.1
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecC
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITD 998 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~ 998 (1359)
.+.++++++++.++.+ .++ +.+||+|++|+++|+||++|+.+.+.+.... ....+.+.+...+.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~-------~~~~v~~~~~~~~~~v~~ 73 (114)
T cd04613 2 DVVTIPEDTPLNELLD-VIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLY-------DLVVASDIMTKPPVVVYP 73 (114)
T ss_pred CceeeCCCCcHHHHHH-HHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccccc-------ccEEHHHhccCCCcEEcC
Confidence 4567999999999999 555 5689999878999999999999876332110 124567788888999999
Q ss_pred CCCHHHHHHHHHHcCC
Q psy9748 999 QTPMETVVDMYKKRSI 1014 (1359)
Q Consensus 999 dtpLeel~~lm~~~gI 1014 (1359)
++++.++.+.|.+.+.
T Consensus 74 ~~~~~~~~~~~~~~~~ 89 (114)
T cd04613 74 EDSLEDALKKFEDSDY 89 (114)
T ss_pred CCCHHHHHHHHhhCCc
Confidence 9999999999988764
No 143
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.54 E-value=0.00039 Score=68.58 Aligned_cols=93 Identities=17% Similarity=0.247 Sum_probs=69.1
Q ss_pred cCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCC---CCCCCCccccccccccccE
Q psy9748 922 MAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQP---LPGAPPILRLDKILDMAPI 994 (1359)
Q Consensus 922 ~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~---~~~~~~~~rv~~im~~~~~ 994 (1359)
+.++++++++++.++.+ .++ +.+||+|++|+++|+||++|+++++........ .........+.+.|...+.
T Consensus 2 ~~~~~v~~~~~~~~~~~-~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 2 RDVVTVTPDTSLEEAWA-LLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CCcEEeCCCCCHHHHHH-HHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 45788999999999999 555 468999887899999999999987643221100 0000122346677888899
Q ss_pred EecCCCCHHHHHHHHHHcCCC
Q psy9748 995 TITDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 995 tV~~dtpLeel~~lm~~~gI~ 1015 (1359)
.+.+++++.++++.|.+.+.+
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~ 101 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHH 101 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCC
Confidence 999999999999999987643
No 144
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.52 E-value=0.00051 Score=67.28 Aligned_cols=85 Identities=11% Similarity=0.128 Sum_probs=67.5
Q ss_pred CeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCC
Q psy9748 924 PITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQ 999 (1359)
Q Consensus 924 PiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~d 999 (1359)
+.++++++++.++.+ .+. +.++|+|++|+++|+||++|+.+........ ....++.+.+...+.++.++
T Consensus 3 ~~~v~~~~~l~~a~~-~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~------~~~~~v~~~~~~~~~~v~~~ 75 (114)
T cd04619 3 LAKIDVNATLQRAAK-ILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGP------GCTAPVENVMTRAVVSCRPG 75 (114)
T ss_pred eEEECCCCcHHHHHH-HHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCC------cccCCHHHHhcCCCeeECCC
Confidence 457899999999999 555 5689999888999999999999866432111 11234667888889999999
Q ss_pred CCHHHHHHHHHHcCCC
Q psy9748 1000 TPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 1000 tpLeel~~lm~~~gI~ 1015 (1359)
++++++.+.|.+.+..
T Consensus 76 ~~l~~a~~~m~~~~~~ 91 (114)
T cd04619 76 DLLHDVWQVMKQRGLK 91 (114)
T ss_pred CCHHHHHHHHHHcCCC
Confidence 9999999999998763
No 145
>KOG2550|consensus
Probab=97.51 E-value=0.00016 Score=84.40 Aligned_cols=103 Identities=16% Similarity=0.247 Sum_probs=87.1
Q ss_pred EeCCCCCHHHHHHHHHhcCCCeEEEEEeC-CCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 833 LTQDSMTVQDVETLLKETEHNGFPVVVSR-ESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 833 iv~~~~TV~el~~lL~~~~~sgfPVVds~-~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
+..|+.|+.++.+.-..+.++++||.++. -..+|+|+|+.+|+...- .
T Consensus 120 v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~-------------------------------~ 168 (503)
T KOG2550|consen 120 VISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLE-------------------------------D 168 (503)
T ss_pred ccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhh-------------------------------c
Confidence 45789999999999999999999999642 347899999999987651 1
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHH
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFV 967 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l 967 (1359)
+...++++|.+.+++.+...+++++-+ +.+ ..+||+|+.|.++-+|+|.|+.+..
T Consensus 169 ~~~~~~~vmt~~~~~~~~gi~l~~~ne-iL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 169 NSLLVSDVMTKNPVTGAQGITLKEANE-ILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred ccchhhhhcccccccccccccHHHHHH-HHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 235688999999999999999999999 666 4589999888999999999998753
No 146
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.51 E-value=0.00027 Score=80.43 Aligned_cols=95 Identities=7% Similarity=0.146 Sum_probs=77.3
Q ss_pred ccccccccccC-CeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccc
Q psy9748 913 ILRLDKILDMA-PITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKI 988 (1359)
Q Consensus 913 ~idL~~iMd~s-PiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~i 988 (1359)
...++++|++. +.++++++++.++.+.|-+ +.++|+|++|+++|+||.+|+.+...... .....+.++
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~--------~~~~~v~~i 225 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGG--------SLKSEVRDF 225 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCC--------cccCcHHHh
Confidence 36789999998 8899999999999994433 57899998789999999999988653211 112346788
Q ss_pred cccccEEecCCCCHHHHHHHHHHcCCC
Q psy9748 989 LDMAPITITDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 989 m~~~~~tV~~dtpLeel~~lm~~~gI~ 1015 (1359)
|......+.+++++.++.+.|.+.++.
T Consensus 226 m~~~~~~v~~~~~l~~a~~~m~~~~~~ 252 (268)
T TIGR00393 226 MTLGPKTFKLDALLLEALEFLERRKIT 252 (268)
T ss_pred CCCCCeEECCCCcHHHHHHHHHHcCCc
Confidence 888889999999999999999999854
No 147
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.50 E-value=0.00059 Score=67.29 Aligned_cols=86 Identities=8% Similarity=0.113 Sum_probs=65.9
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCcccccccccc--ccEEec
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDM--APITIT 997 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~--~~~tV~ 997 (1359)
++.++++++++.++.+.|-+ +.+||+|+.|+++|+||.+|+.+...+.. + .....+.+.|.. ...+++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~v~ 74 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA--D-----LQKVPVGVIMTRMPNITTTT 74 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC--C-----ccCCCHHHHhCCCCCcEEEC
Confidence 35789999999999994433 57899998779999999999998764321 1 112334566664 577999
Q ss_pred CCCCHHHHHHHHHHcCCC
Q psy9748 998 DQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 998 ~dtpLeel~~lm~~~gI~ 1015 (1359)
+++++.++.+.|.+++++
T Consensus 75 ~~~~l~~~~~~~~~~~~~ 92 (118)
T cd04617 75 PEESVLEAAKKLIEHQVD 92 (118)
T ss_pred CCCcHHHHHHHHHHcCCC
Confidence 999999999999998865
No 148
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.48 E-value=0.00066 Score=66.32 Aligned_cols=86 Identities=10% Similarity=0.179 Sum_probs=66.9
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCC-CcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEec
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANA-KRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITIT 997 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdeg-GrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~ 997 (1359)
...++++++++.++++ .++ +.+||+|++ |+++|++|.+|+++.+.....+ .....+.+.|.....++.
T Consensus 2 ~~~~v~~~~~~~~~~~-~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~~~~~~~~~v~ 74 (114)
T cd04630 2 NVVTIDGLATVAEALQ-LMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRD------PDRVNVYEIMTKPLISVS 74 (114)
T ss_pred CcEEECCCCcHHHHHH-HHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCC------CCccCHHHHhcCCCeeEC
Confidence 4568999999999999 555 468999876 7999999999999876442111 112346677777889999
Q ss_pred CCCCHHHHHHHHHHcCCC
Q psy9748 998 DQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 998 ~dtpLeel~~lm~~~gI~ 1015 (1359)
+++++.++.+.|.+.+..
T Consensus 75 ~~~~l~~~~~~~~~~~~~ 92 (114)
T cd04630 75 PDMDIKYCARLMERTNIR 92 (114)
T ss_pred CCCCHHHHHHHHHHcCCC
Confidence 999999999999987644
No 149
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.48 E-value=0.00066 Score=66.31 Aligned_cols=85 Identities=13% Similarity=0.232 Sum_probs=66.7
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecC
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITD 998 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~ 998 (1359)
.+.++++++++.++.+ .++ +.++|+|++|+++|+++.+|+.+...+.... ....+.+.|......+.+
T Consensus 2 ~~~~v~~~~~~~~~~~-~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~ 73 (115)
T cd04593 2 PPPVLSATTPLREAAE-QLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAG-------EPSAVDEVATPPLLTVHP 73 (115)
T ss_pred CCcEeCCCCCHHHHHH-HHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccccc-------ccccHHHhccCCceEECC
Confidence 4678999999999999 554 5689999878999999999999876432110 112255677788899999
Q ss_pred CCCHHHHHHHHHHcCCC
Q psy9748 999 QTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 999 dtpLeel~~lm~~~gI~ 1015 (1359)
++++.++++.|.+++..
T Consensus 74 ~~~l~~~l~~~~~~~~~ 90 (115)
T cd04593 74 DEPLAHALDRMASRGLR 90 (115)
T ss_pred CCCHHHHHHHHHHcCCc
Confidence 99999999999998854
No 150
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.47 E-value=0.0004 Score=69.77 Aligned_cols=83 Identities=11% Similarity=0.127 Sum_probs=67.0
Q ss_pred cCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEec
Q psy9748 922 MAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITIT 997 (1359)
Q Consensus 922 ~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~ 997 (1359)
++++++++++++.++.+ .++ +++||+|++|+++|+||.+|+++.+.+...+ +..++.++|.....+++
T Consensus 2 ~~~~~v~~~~~v~~a~~-~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~-------~~~~v~~im~~~~~~v~ 73 (124)
T cd04608 2 KAPVTVLPTVTCAEAIE-ILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQ-------PSDPVSKALYKQFKRVN 73 (124)
T ss_pred CCCEEECCCCCHHHHHH-HHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccC-------CCCcHHHHhhccceecC
Confidence 35778999999999999 555 5799999878999999999999876543211 12368899999999999
Q ss_pred CCCCHHHHHHHHHHc
Q psy9748 998 DQTPMETVVDMYKKR 1012 (1359)
Q Consensus 998 ~dtpLeel~~lm~~~ 1012 (1359)
++++++++.+.+...
T Consensus 74 ~~~~~~~v~~~~~~~ 88 (124)
T cd04608 74 KNDTLGKLSRILETD 88 (124)
T ss_pred CCCCHHHHHhhcccC
Confidence 999999999976543
No 151
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.46 E-value=0.00076 Score=65.32 Aligned_cols=85 Identities=14% Similarity=0.216 Sum_probs=66.5
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCC
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQ 999 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~d 999 (1359)
++.++++++++.++.+.|-+ +.+||+|++|+++|+||.+|+++.+.+... ....+.+.|......+.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~--------~~~~v~~~~~~~~~~v~~~ 73 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGID--------LDTPVSEIMTRDLVTVDPD 73 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCC--------CccCHHHhccCCCEEECCC
Confidence 46789999999999994433 578999987899999999999987644211 1123557777888999999
Q ss_pred CCHHHHHHHHHHcCCC
Q psy9748 1000 TPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 1000 tpLeel~~lm~~~gI~ 1015 (1359)
+++.++.+.|.+++..
T Consensus 74 ~~~~~~~~~~~~~~~~ 89 (112)
T cd04624 74 EPVAEAAKLMRKNNIR 89 (112)
T ss_pred CcHHHHHHHHHHcCcc
Confidence 9999999999887643
No 152
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.45 E-value=0.00072 Score=65.25 Aligned_cols=81 Identities=16% Similarity=0.248 Sum_probs=65.2
Q ss_pred cCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEec
Q psy9748 922 MAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITIT 997 (1359)
Q Consensus 922 ~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~ 997 (1359)
++++++++++++.++++ .|. ..++|+|++|+++|+||.+|+++...... ..+.+.+......+.
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~-----------~~~~~~~~~~~~~v~ 69 (110)
T cd04605 2 RPVVTISEDASIKEAAK-LMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK-----------KSVEDIMTRNVITAT 69 (110)
T ss_pred CCCEEECCCCCHHHHHH-HHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc-----------cCHHHhcCCCCeEEC
Confidence 35678999999999999 555 46899998889999999999987654321 125566777788999
Q ss_pred CCCCHHHHHHHHHHcCC
Q psy9748 998 DQTPMETVVDMYKKRSI 1014 (1359)
Q Consensus 998 ~dtpLeel~~lm~~~gI 1014 (1359)
++++++++.+.|.+.+.
T Consensus 70 ~~~~l~~~~~~~~~~~~ 86 (110)
T cd04605 70 PDEPIDVAARKMERHNI 86 (110)
T ss_pred CCCcHHHHHHHHHHhCC
Confidence 99999999999988764
No 153
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.45 E-value=0.0006 Score=66.15 Aligned_cols=88 Identities=8% Similarity=0.108 Sum_probs=67.4
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCC
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQ 999 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~d 999 (1359)
.+.++++++++.++.+.|.+ +.+||+|++++++|+||.+|+++.+.+....+ .....+.+.|...+..+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~-----~~~~~v~~~~~~~~~~v~~~ 76 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHC-----DGVATVRDIMTTEVLTVSPD 76 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhcc-----CCCccHHHHhccCceEECCC
Confidence 46789999999999994443 46899998889999999999998764422111 11234567777788899999
Q ss_pred CCHHHHHHHHHHcCCC
Q psy9748 1000 TPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 1000 tpLeel~~lm~~~gI~ 1015 (1359)
+++.++.+.|.+.+.+
T Consensus 77 ~~l~~~~~~~~~~~~~ 92 (114)
T cd04629 77 DSIVDLAQLMLKAKPK 92 (114)
T ss_pred CcHHHHHHHHHHhCCC
Confidence 9999999999988654
No 154
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.44 E-value=0.00079 Score=65.54 Aligned_cols=85 Identities=14% Similarity=0.196 Sum_probs=66.8
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCC
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQ 999 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~d 999 (1359)
.++++++++++.++.+.|-+ +.++|+|++|+++|++|.+|+++.+.+.. ++ ..++.+.+......+.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~--~~------~~~v~~~~~~~~~~v~~~ 74 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGL--SL------DDPVSEVMNRNPITAKVG 74 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCC--Cc------CCCHHHhhcCCCEEEcCC
Confidence 46789999999999994433 57899988889999999999987664321 11 123567777788899999
Q ss_pred CCHHHHHHHHHHcCCC
Q psy9748 1000 TPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 1000 tpLeel~~lm~~~gI~ 1015 (1359)
+++.++.+.|.+.+.+
T Consensus 75 ~~l~~~~~~~~~~~~~ 90 (113)
T cd04607 75 SSREEILALMRERSIR 90 (113)
T ss_pred CCHHHHHHHHHHCCCC
Confidence 9999999999998655
No 155
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.43 E-value=0.001 Score=64.21 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=66.7
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCC
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQ 999 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~d 999 (1359)
.+.+++++++++++.+.|.+ .++||+|++++++|++|.+|+++.+.....+. ...++.+.|......+.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~ 75 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASA------LDTPVSEIMTRNVITVTPD 75 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCc------cccCHHHhcCCCcEEECCC
Confidence 35678999999999994433 57899988779999999999998775432111 1234567777788899999
Q ss_pred CCHHHHHHHHHHcCC
Q psy9748 1000 TPMETVVDMYKKRSI 1014 (1359)
Q Consensus 1000 tpLeel~~lm~~~gI 1014 (1359)
.+++++.+.|.+.+.
T Consensus 76 ~~~~~~l~~~~~~~~ 90 (113)
T cd04623 76 DTVDEAMALMTERRF 90 (113)
T ss_pred CcHHHHHHHHHHcCC
Confidence 999999999988765
No 156
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.42 E-value=0.00076 Score=64.98 Aligned_cols=84 Identities=12% Similarity=0.204 Sum_probs=65.6
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCC
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQ 999 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~d 999 (1359)
.++++++++++.++.+.|.+ +.+||+|+ |+++|+++++|+.+.......+. .++.+.+......+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~ 72 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREAT--------VLVGDVMTRDPVTASPD 72 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcccc--------cCHHHhccCCCeEECCC
Confidence 56789999999999994433 56899988 79999999999988653221100 34556777788999999
Q ss_pred CCHHHHHHHHHHcCCC
Q psy9748 1000 TPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 1000 tpLeel~~lm~~~gI~ 1015 (1359)
+++.++++.|.+.+..
T Consensus 73 ~~~~~~~~~~~~~~~~ 88 (111)
T cd04612 73 ETLRDALKRMAERDIG 88 (111)
T ss_pred CCHHHHHHHHHhCCCC
Confidence 9999999999987754
No 157
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.42 E-value=0.0006 Score=67.61 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=65.5
Q ss_pred CeEecCCCCHHHHHHHhhc----ceeEEEcCC-CcEEEEEeHHHHHHHHhhccCCCCCCCC--CCccccccccccccEEe
Q psy9748 924 PITITDQTPMETVCGHTFT----KQLLFPANA-KRTLEGLRGDSIVRFVQNDTQPQPLPGA--PPILRLDKILDMAPITI 996 (1359)
Q Consensus 924 PiTV~~~tpLeeVle~mFr----R~LpVVdeg-GrLvGIITrkDILr~l~~~~~~~~~~~~--~~~~rv~~im~~~~~tV 996 (1359)
+.++++++++.++.+ .|+ +.+||+|++ |+++|+||.+|+++.+............ .......+.+......+
T Consensus 3 ~~~v~~~~~i~~a~~-~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (123)
T cd04627 3 FIPVPSTASLFQAIE-ILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI 81 (123)
T ss_pred ceecCCCCCHHHHHH-HHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence 567899999999999 555 468999986 7999999999999876432211110000 00112234566778899
Q ss_pred cCCCCHHHHHHHHHHcCCC
Q psy9748 997 TDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 997 ~~dtpLeel~~lm~~~gI~ 1015 (1359)
.+++++.++++.|.+++.+
T Consensus 82 ~~~~~l~~a~~~m~~~~~~ 100 (123)
T cd04627 82 NGDQPLIDALHLMHNEGIS 100 (123)
T ss_pred CCCCCHHHHHHHHHHcCCc
Confidence 9999999999999998765
No 158
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.39 E-value=0.00049 Score=66.98 Aligned_cols=88 Identities=8% Similarity=0.077 Sum_probs=66.5
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecC
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITD 998 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~ 998 (1359)
.++++++++++.++.+ .++ +.+||+|++|+++|+||.+|+++.+.+....+... .....+.+.|......+.+
T Consensus 2 ~~~~v~~~~~~~~~~~-~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~v~~ 78 (116)
T cd04643 2 EVAYVQDTNTLRHALL-VLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLER--LVDLKVIDVMNTDVPVIID 78 (116)
T ss_pred CcEEECCCCcHHHHHH-HHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHH--HhCCcHHHHhcCCCceecC
Confidence 3578999999999999 666 56899998789999999999998775322111000 0123466778878889999
Q ss_pred CCCHHHHHHHHHHcC
Q psy9748 999 QTPMETVVDMYKKRS 1013 (1359)
Q Consensus 999 dtpLeel~~lm~~~g 1013 (1359)
++++.++.+.|.+.+
T Consensus 79 ~~~l~~a~~~~~~~~ 93 (116)
T cd04643 79 DADIEEILHLLIDQP 93 (116)
T ss_pred CCCHHHHHHHHhcCC
Confidence 999999999998765
No 159
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.37 E-value=0.00096 Score=64.71 Aligned_cols=85 Identities=12% Similarity=0.209 Sum_probs=65.7
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCC
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQ 999 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~d 999 (1359)
.|.++++++++.++.+.|-+ +.++|+|++|+++|++|.+|+.+...+.. . .....+.++|.....++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~--~-----~~~~~i~~~~~~~~~~v~~~ 74 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESE--E-----LKDAKVREVMNSPVITIDAN 74 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhh--h-----hcCCcHHHhccCCceEECCC
Confidence 37789999999999995544 56899998889999999999987543211 0 11124566777788999999
Q ss_pred CCHHHHHHHHHHcCC
Q psy9748 1000 TPMETVVDMYKKRSI 1014 (1359)
Q Consensus 1000 tpLeel~~lm~~~gI 1014 (1359)
++++++.+.|.+.+.
T Consensus 75 ~~l~~~~~~~~~~~~ 89 (113)
T cd04615 75 DSIAKARWLMSNNNI 89 (113)
T ss_pred CcHHHHHHHHHHcCC
Confidence 999999999988764
No 160
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.36 E-value=0.0011 Score=63.91 Aligned_cols=83 Identities=10% Similarity=0.170 Sum_probs=65.0
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCC
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQ 999 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~d 999 (1359)
.+++++++++++++.+.|.+ +.++|+++ ++++|++|++|+++....... ...+.+.+......+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~---------~~~v~~~~~~~~~~v~~~ 71 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE---------LAKVKDVMTKDVITIDED 71 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc---------ccCHHHHhcCCceEECCC
Confidence 46789999999999994443 57899988 799999999999986543211 133556777788899999
Q ss_pred CCHHHHHHHHHHcCCC
Q psy9748 1000 TPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 1000 tpLeel~~lm~~~gI~ 1015 (1359)
.++.++.+.|.+.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~ 87 (110)
T cd04588 72 EQLYDAIRLMNKHNVG 87 (110)
T ss_pred CCHHHHHHHHHhcCCC
Confidence 9999999999887753
No 161
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.36 E-value=0.00093 Score=65.26 Aligned_cols=83 Identities=5% Similarity=0.160 Sum_probs=64.5
Q ss_pred CeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCCC
Q psy9748 924 PITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQT 1000 (1359)
Q Consensus 924 PiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~dt 1000 (1359)
+.++++++++.++.+.|-+ +.++|+|++|+++|+||.+|+.+...+ +. ....+.+.|.....++.+++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~----~~-----~~~~v~~~~~~~~~~v~~~~ 73 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN----DY-----ETLKVCEVYIVPVPIVYCDS 73 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc----cc-----cccChhheeecCCcEECCCC
Confidence 6789999999999994432 578999988899999999999873211 10 01235566777788999999
Q ss_pred CHHHHHHHHHHcCCC
Q psy9748 1001 PMETVVDMYKKRSIS 1015 (1359)
Q Consensus 1001 pLeel~~lm~~~gI~ 1015 (1359)
++.++++.|.+++.+
T Consensus 74 ~l~~al~~m~~~~~~ 88 (111)
T cd04603 74 KVTDLLRIFRETEPP 88 (111)
T ss_pred cHHHHHHHHHHcCCC
Confidence 999999999999865
No 162
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.36 E-value=0.001 Score=67.93 Aligned_cols=91 Identities=9% Similarity=0.061 Sum_probs=68.2
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCC-------------C---CCCCCc
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQP-------------L---PGAPPI 982 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~-------------~---~~~~~~ 982 (1359)
.+.++++++++.++++ .|+ +.+||+|++|+++|+||.+|+++.......... . ......
T Consensus 2 ~~~~v~~~~~~~~a~~-~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04621 2 DIATVHPEHSLLHVVD-EMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP 80 (135)
T ss_pred CceEeCCCCcHHHHHH-HHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence 3568999999999999 666 468999988899999999999987743221110 0 000012
Q ss_pred cccccccccccEEecCCCCHHHHHHHHHHcCC
Q psy9748 983 LRLDKILDMAPITITDQTPMETVVDMYKKRSI 1014 (1359)
Q Consensus 983 ~rv~~im~~~~~tV~~dtpLeel~~lm~~~gI 1014 (1359)
..+.++|...+..+.+++++.++.+.|.+.+.
T Consensus 81 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~ 112 (135)
T cd04621 81 LVAEDIMTEEIITVSPNDDVVDAAKLMLEANI 112 (135)
T ss_pred ccHHHhcCCCCeEECCCCCHHHHHHHHHHcCC
Confidence 34677888888899999999999999988765
No 163
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.34 E-value=0.001 Score=64.91 Aligned_cols=91 Identities=15% Similarity=0.239 Sum_probs=67.5
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCC---CCccccccccccccEE
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGA---PPILRLDKILDMAPIT 995 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~---~~~~rv~~im~~~~~t 995 (1359)
.+.+++++.++.++++ +++ +.+||+|+ |+++|+++++|+++.............. .....+.++|......
T Consensus 2 ~~~~v~~~~~~~~~~~-~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04585 2 NPITVTPDTSLMEALK-LMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPIT 79 (122)
T ss_pred CCEEeCCCCcHHHHHH-HHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeE
Confidence 4678999999999999 555 57899998 6999999999999876432211111000 1123466778888899
Q ss_pred ecCCCCHHHHHHHHHHcCCC
Q psy9748 996 ITDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 996 V~~dtpLeel~~lm~~~gI~ 1015 (1359)
++++++++++.+.|.+.+.+
T Consensus 80 v~~~~~l~~~~~~~~~~~~~ 99 (122)
T cd04585 80 VSPDASVEEAAELMLERKIS 99 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCC
Confidence 99999999999999887643
No 164
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.34 E-value=0.00094 Score=64.57 Aligned_cols=83 Identities=7% Similarity=0.136 Sum_probs=66.0
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecC
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITD 998 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~ 998 (1359)
.+.+++++++++++.+ .|+ +.+||+|++|+++|+|+.+|+.+.+.+... ...+.+.+......+.+
T Consensus 2 ~~~~v~~~~~i~e~~~-~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~---------~~~v~~~~~~~~~~i~~ 71 (111)
T cd04639 2 HFETLSPADTLDDAAD-ALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGP---------DAPVRGVMRRDFPTVSP 71 (111)
T ss_pred CceEcCCCCcHHHHHH-HHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCC---------CCcHHHHhcCCCcEECC
Confidence 3567899999999999 555 568999987799999999999987653221 12356777778889999
Q ss_pred CCCHHHHHHHHHHcCCC
Q psy9748 999 QTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 999 dtpLeel~~lm~~~gI~ 1015 (1359)
+++++++.+.|.+++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~ 88 (111)
T cd04639 72 SATLDAVLRLMQQGGAP 88 (111)
T ss_pred CCcHHHHHHHHHhcCCc
Confidence 99999999999987643
No 165
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.33 E-value=0.0009 Score=65.60 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=67.6
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCC--CCCCccccccccccccEEe
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLP--GAPPILRLDKILDMAPITI 996 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~--~~~~~~rv~~im~~~~~tV 996 (1359)
.+.++++++++.++.+ .+. ++++|+|++|+++|+|+.+|+.+.......++... .......+.+.|......+
T Consensus 2 ~~~~~~~~~~l~~a~~-~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i 80 (121)
T cd04584 2 DVVTITPTTTIAEALE-LMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITV 80 (121)
T ss_pred CCEEECCCCCHHHHHH-HHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEE
Confidence 3568899999999999 555 57899998789999999999987654322211110 0112234667777888999
Q ss_pred cCCCCHHHHHHHHHHcCC
Q psy9748 997 TDQTPMETVVDMYKKRSI 1014 (1359)
Q Consensus 997 ~~dtpLeel~~lm~~~gI 1014 (1359)
.++++++++.+.|.+.+.
T Consensus 81 ~~~~~l~~~~~~~~~~~~ 98 (121)
T cd04584 81 HPLDTVEEAALLMREHRI 98 (121)
T ss_pred CCCCcHHHHHHHHHHcCC
Confidence 999999999999988764
No 166
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.33 E-value=0.00066 Score=83.76 Aligned_cols=91 Identities=7% Similarity=0.138 Sum_probs=75.6
Q ss_pred ccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCcccccccc
Q psy9748 913 ILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKIL 989 (1359)
Q Consensus 913 ~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im 989 (1359)
.++++++|.++|+++++++++.++.+.|-+ +.+||+|++++++|+||.+|+... + ....+.++|
T Consensus 88 ~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~-------~------~~~~V~diM 154 (479)
T PRK07807 88 WVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV-------D------RFTQVRDVM 154 (479)
T ss_pred hcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC-------c------cCCCHHHhc
Confidence 356778999999999999999999994433 568999988899999999998421 1 012477889
Q ss_pred ccccEEecCCCCHHHHHHHHHHcCCCc
Q psy9748 990 DMAPITITDQTPMETVVDMYKKRSISV 1016 (1359)
Q Consensus 990 ~~~~~tV~~dtpLeel~~lm~~~gI~l 1016 (1359)
+..+.+++++++++++.+.|.+++++.
T Consensus 155 t~~~itV~~d~sL~eAl~lM~~~~i~~ 181 (479)
T PRK07807 155 STDLVTLPAGTDPREAFDLLEAARVKL 181 (479)
T ss_pred cCCceEECCCCcHHHHHHHHHhcCCCE
Confidence 999999999999999999999998664
No 167
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.33 E-value=0.0011 Score=63.58 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=62.6
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCC
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQ 999 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~d 999 (1359)
.+++++++.+++++++.|-+ +.++|+|++|+++|++|++|+++... ..+.+.+......+.++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~--------------~~~~~~~~~~~~~~~~~ 67 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG--------------GCCGDHAEPFKVTVSVD 67 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc--------------cchhhhcccCCEEECCC
Confidence 46789999999999984433 56889987779999999999986421 01345566667789999
Q ss_pred CCHHHHHHHHHHcCCC
Q psy9748 1000 TPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 1000 tpLeel~~lm~~~gI~ 1015 (1359)
+++.++.+.|.+.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~ 83 (106)
T cd04582 68 DDLRIVLSRMFAHDMS 83 (106)
T ss_pred CCHHHHHHHHHHCCCC
Confidence 9999999999998865
No 168
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.33 E-value=0.00087 Score=66.22 Aligned_cols=92 Identities=11% Similarity=0.204 Sum_probs=67.9
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCC-CcEEEEEeHHHHHHHHhhccCCCCC----CCCCCcccccccccccc
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANA-KRTLEGLRGDSIVRFVQNDTQPQPL----PGAPPILRLDKILDMAP 993 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdeg-GrLvGIITrkDILr~l~~~~~~~~~----~~~~~~~rv~~im~~~~ 993 (1359)
.+.++++++++.++++ +|. +.+||+|++ |+++|+|+++|+++++.+....... ........+.+.+....
T Consensus 2 ~~~~v~~~~~~~~~~~-~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIMEAAK-IMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHHHHHH-HHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 4567899999999999 665 468999886 7999999999999877542211100 00011234667777789
Q ss_pred EEecCCCCHHHHHHHHHHcCCC
Q psy9748 994 ITITDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 994 ~tV~~dtpLeel~~lm~~~gI~ 1015 (1359)
..+++++++.++.+.|.+.+.+
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~ 102 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVG 102 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCc
Confidence 9999999999999999988753
No 169
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.30 E-value=0.00089 Score=66.76 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=66.9
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCC------CCCCCccccccccccc
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPL------PGAPPILRLDKILDMA 992 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~------~~~~~~~rv~~im~~~ 992 (1359)
...++++++++.++++ ++. +.++|+|++|+++|+||++|+.+.+......... ........+.+.|...
T Consensus 2 ~~~~i~~~~~~~~~~~-~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd04632 2 DVITVREDDSVGKAIN-VLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSP 80 (128)
T ss_pred CceEeCCCCCHHHHHH-HHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCC
Confidence 3567899999999999 555 4689999888999999999998765321100000 0001123466788888
Q ss_pred cEEecCCCCHHHHHHHHHHcCCC
Q psy9748 993 PITITDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 993 ~~tV~~dtpLeel~~lm~~~gI~ 1015 (1359)
...+.+++++.++++.|.+.+..
T Consensus 81 ~~~v~~~~~l~~~l~~~~~~~~~ 103 (128)
T cd04632 81 VITASPNDSVRDAVDRMLENDDS 103 (128)
T ss_pred CceECCCCcHHHHHHHHHhCCCC
Confidence 89999999999999999887643
No 170
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.29 E-value=0.0013 Score=66.24 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=67.6
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCC-C------------CCCcccc
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLP-G------------APPILRL 985 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~-~------------~~~~~rv 985 (1359)
.++++++++++.++.+ .++ +.+||+|++|+++|+|+.+|+++.+.......... . ......+
T Consensus 2 ~~~~v~~~~~l~~~~~-~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 2 DVITVKKDDTLRDVVE-ILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred CCeEeCCCCcHHHHHH-HHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence 4678999999999999 554 57899998889999999999998775322111000 0 0001145
Q ss_pred ccccccccEEecCCCCHHHHHHHHHHcCCC
Q psy9748 986 DKILDMAPITITDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 986 ~~im~~~~~tV~~dtpLeel~~lm~~~gI~ 1015 (1359)
.+++...+..+.+++++.++.+.|.+.+.+
T Consensus 81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~ 110 (132)
T cd04636 81 EEIMTKKVITVDEDTTIEDVARIMSKKNIK 110 (132)
T ss_pred HHhccCCceEECCCCcHHHHHHHHHHCCCC
Confidence 677778889999999999999999887653
No 171
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.29 E-value=0.0014 Score=63.57 Aligned_cols=84 Identities=8% Similarity=0.168 Sum_probs=65.9
Q ss_pred CeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCCC
Q psy9748 924 PITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQT 1000 (1359)
Q Consensus 924 PiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~dt 1000 (1359)
+.++++++++.++.+.|.+ +.+||+|++|+++|+++.+|+.++...... ....+.+.|......+.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~--------~~~~v~~~~~~~~~~v~~~~ 74 (111)
T cd04626 3 FPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF--------LEKKVFNIVSQDVFYVNEED 74 (111)
T ss_pred ceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc--------ccCcHHHHhcCCcEEEcCCC
Confidence 5678999999999994544 468999987899999999999876532110 11245567778888999999
Q ss_pred CHHHHHHHHHHcCCC
Q psy9748 1001 PMETVVDMYKKRSIS 1015 (1359)
Q Consensus 1001 pLeel~~lm~~~gI~ 1015 (1359)
++.++.+.|.+++.+
T Consensus 75 ~l~~~~~~~~~~~~~ 89 (111)
T cd04626 75 TIDEALDIMREKQIG 89 (111)
T ss_pred cHHHHHHHHHHcCCC
Confidence 999999999998765
No 172
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.28 E-value=0.0016 Score=63.06 Aligned_cols=85 Identities=14% Similarity=0.177 Sum_probs=65.8
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCC
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQ 999 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~d 999 (1359)
.+++++++++++++.+.|-+ +.++|+|+ |+++|++|.+|+++...+... .....+.+.|......++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~-------~~~~~i~~~~~~~~~~v~~~ 73 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGL-------PSSTPVGEIATFPLITVDPD 73 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCC-------CCCCCHHHHhCCCcEEECCC
Confidence 46789999999999994433 46888888 699999999999986643211 11233556777788899999
Q ss_pred CCHHHHHHHHHHcCCC
Q psy9748 1000 TPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 1000 tpLeel~~lm~~~gI~ 1015 (1359)
+++.++++.|.+.+.+
T Consensus 74 ~~l~~~~~~~~~~~~~ 89 (111)
T cd04589 74 DFLFNALLLMTRHRIH 89 (111)
T ss_pred CcHHHHHHHHHHhCcc
Confidence 9999999999998766
No 173
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.28 E-value=0.0015 Score=63.06 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=65.4
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecC
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITD 998 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~ 998 (1359)
.+.+++++.++.++.+ ++. +.+||+|+ ++++|+|+.+|+.+.+...... ....+.+.+......+++
T Consensus 2 ~~~~v~~~~~~~~~~~-~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~-------~~~~i~~~~~~~~~~v~~ 72 (111)
T cd04800 2 PPVTCSPDTTIREAAR-LMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLD-------PDTPVSEVMTAPPITIPP 72 (111)
T ss_pred CCEEECCCCcHHHHHH-HHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCC-------ccCCHHHHhCCCCeEECC
Confidence 4678999999999999 555 56899988 6999999999999765432110 113456777788899999
Q ss_pred CCCHHHHHHHHHHcCC
Q psy9748 999 QTPMETVVDMYKKRSI 1014 (1359)
Q Consensus 999 dtpLeel~~lm~~~gI 1014 (1359)
+++++++++.|.+.+.
T Consensus 73 ~~~l~~~~~~~~~~~~ 88 (111)
T cd04800 73 DATVFEALLLMLERGI 88 (111)
T ss_pred CCcHHHHHHHHHHcCC
Confidence 9999999999998865
No 174
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.27 E-value=0.00091 Score=67.55 Aligned_cols=94 Identities=12% Similarity=0.198 Sum_probs=69.4
Q ss_pred cCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCC---------CCC------CCCCcc
Q psy9748 922 MAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQ---------PLP------GAPPIL 983 (1359)
Q Consensus 922 ~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~---------~~~------~~~~~~ 983 (1359)
..+.++++++++.++.+.|.+ +++||+|++++++|+|+++|+.+.......+. ... ......
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 346789999999999994444 57899998889999999999998654321100 000 001223
Q ss_pred ccccccccccEEecCCCCHHHHHHHHHHcCCC
Q psy9748 984 RLDKILDMAPITITDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 984 rv~~im~~~~~tV~~dtpLeel~~lm~~~gI~ 1015 (1359)
++.+++......+.+++++.++.+.|.+.+.+
T Consensus 82 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 113 (135)
T cd04586 82 KVADVMTRPVVTVGEDTPLAEVAELMEEHRIK 113 (135)
T ss_pred CHHHHhCCCceEeCCCCcHHHHHHHHHHcCCC
Confidence 56778888889999999999999999998864
No 175
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.27 E-value=0.0014 Score=64.39 Aligned_cols=91 Identities=10% Similarity=0.181 Sum_probs=68.2
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCC--CCCCCccccccccccccEEe
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPL--PGAPPILRLDKILDMAPITI 996 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~--~~~~~~~rv~~im~~~~~tV 996 (1359)
.++++.+++++.++.+ .++ +.+||+|++|+++|++|.+|+++........... .......++.+++......+
T Consensus 2 ~~~~v~~~~~~~~~~~-~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v 80 (122)
T cd04803 2 PVVTLSEDDSLADAEE-LMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTV 80 (122)
T ss_pred CCEEeCCCCcHHHHHH-HHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEe
Confidence 3678999999999999 555 5689999877999999999999876432111100 00112345677888888999
Q ss_pred cCCCCHHHHHHHHHHcCC
Q psy9748 997 TDQTPMETVVDMYKKRSI 1014 (1359)
Q Consensus 997 ~~dtpLeel~~lm~~~gI 1014 (1359)
.+++++.++.+.|.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (122)
T cd04803 81 TPDTPLREAAEIMVENKI 98 (122)
T ss_pred CCCCcHHHHHHHHHHcCC
Confidence 999999999999988774
No 176
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.26 E-value=0.0016 Score=62.44 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=63.1
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCC
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQ 999 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~d 999 (1359)
.+.+++++.++.++.+.|-+ ++++|+|++|+++|+||.+|+++..... ..+.+.|......++++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~------------~~v~~~~~~~~~~v~~~ 70 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKEA------------KSLEDIMLEDVFTVQPD 70 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhcC------------CcHhHhhcCCceEECCC
Confidence 46789999999999994433 5689999888999999999998754211 12455667778889999
Q ss_pred CCHHHHHHHHHHcCC
Q psy9748 1000 TPMETVVDMYKKRSI 1014 (1359)
Q Consensus 1000 tpLeel~~lm~~~gI 1014 (1359)
++++++.+.|.+.+.
T Consensus 71 ~~~~~~~~~~~~~~~ 85 (109)
T cd04583 71 ASLRDVLGLVLKRGP 85 (109)
T ss_pred CcHHHHHHHHHHcCC
Confidence 999999999988654
No 177
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.21 E-value=0.0021 Score=60.90 Aligned_cols=84 Identities=10% Similarity=0.185 Sum_probs=64.9
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecC
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITD 998 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~ 998 (1359)
.+.++++++++.++.+ .++ +.++|+|++++++|+++++|+++........+.. .+.+.+......+.+
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 73 (113)
T cd02205 2 DVVTVSPDDTVAEALR-LMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLV-------TVGDVMTRDVVTVSP 73 (113)
T ss_pred CceEecCCCCHHHHHH-HHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCccc-------cHHHHhcCCceecCC
Confidence 3567899999999999 555 4689999878999999999999887543322211 134556667888899
Q ss_pred CCCHHHHHHHHHHcCC
Q psy9748 999 QTPMETVVDMYKKRSI 1014 (1359)
Q Consensus 999 dtpLeel~~lm~~~gI 1014 (1359)
++++.++.+.|.+.+.
T Consensus 74 ~~~~~~~~~~~~~~~~ 89 (113)
T cd02205 74 DTSLEEAAELMLEHGI 89 (113)
T ss_pred CcCHHHHHHHHHHcCC
Confidence 9999999999988754
No 178
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.21 E-value=0.0014 Score=65.42 Aligned_cols=93 Identities=8% Similarity=0.058 Sum_probs=64.7
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCC------CCcccccccccccc
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGA------PPILRLDKILDMAP 993 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~------~~~~rv~~im~~~~ 993 (1359)
.++++++++++.++++.|-+ +.+||+|++|+++|+||.+|+++...+.......... .......+.+....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRPL 81 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccCCC
Confidence 36789999999999994433 4689999888999999999999876432111000000 00011223456678
Q ss_pred EEecCCCCHHHHHHHHHHcCCC
Q psy9748 994 ITITDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 994 ~tV~~dtpLeel~~lm~~~gI~ 1015 (1359)
..+.+++++.++.+.|.+.+++
T Consensus 82 ~~v~~~~~l~~a~~~~~~~~~~ 103 (126)
T cd04642 82 ITCTPSSTLKEVITKLVANKVH 103 (126)
T ss_pred eEECCCCcHHHHHHHHHHhCCc
Confidence 8899999999999999987654
No 179
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.18 E-value=0.0025 Score=61.64 Aligned_cols=84 Identities=13% Similarity=0.237 Sum_probs=64.8
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecC
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITD 998 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~ 998 (1359)
++.+++++++++++.+ ++. +.++|+++ |+++|+||.+|+++...... .+. ....+.+++...+..+.+
T Consensus 2 ~~~~v~~~~~~~~~~~-~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~-~~~-----~~~~v~~i~~~~~~~v~~ 73 (113)
T cd04587 2 KPATVSPTTTVQEAAK-LMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQG-LDP-----ESTLVERVMTPNPVCATS 73 (113)
T ss_pred CCeEeCCCCCHHHHHH-HHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcC-CCc-----CcCCHHHhcCCCCeEEcC
Confidence 3567899999999999 554 46899988 79999999999986554321 110 012466778888889999
Q ss_pred CCCHHHHHHHHHHcCC
Q psy9748 999 QTPMETVVDMYKKRSI 1014 (1359)
Q Consensus 999 dtpLeel~~lm~~~gI 1014 (1359)
++++.++++.|.+.+.
T Consensus 74 ~~~l~~~~~~~~~~~~ 89 (113)
T cd04587 74 DTPVLEALHLMVQGKF 89 (113)
T ss_pred CCCHHHHHHHHHHcCC
Confidence 9999999999998875
No 180
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.18 E-value=0.0033 Score=78.10 Aligned_cols=89 Identities=10% Similarity=0.169 Sum_probs=73.0
Q ss_pred ccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccc
Q psy9748 915 RLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILD 990 (1359)
Q Consensus 915 dL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~ 990 (1359)
.+++.|.+++++++++++++++.+ +++ ..+||+|++++++|+||.+|+.... + ....+.+.|.
T Consensus 88 ~~~dim~~~~v~i~~~~tv~ea~~-~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~------~------~~~~V~dim~ 154 (486)
T PRK05567 88 RSESGVVTDPVTVTPDTTLAEALA-LMARYGISGVPVVDENGKLVGIITNRDVRFET------D------LSQPVSEVMT 154 (486)
T ss_pred hhhhcccCCCeEeCCCCCHHHHHH-HHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc------c------CCCcHHHHcC
Confidence 467888899999999999999999 555 5799999888999999999996421 1 1124667787
Q ss_pred -cccEEecCCCCHHHHHHHHHHcCCCc
Q psy9748 991 -MAPITITDQTPMETVVDMYKKRSISV 1016 (1359)
Q Consensus 991 -~~~~tV~~dtpLeel~~lm~~~gI~l 1016 (1359)
..+.++.+++++.++.+.|.++++..
T Consensus 155 ~~~~v~v~~~~sl~eal~~m~~~~~~~ 181 (486)
T PRK05567 155 KERLVTVPEGTTLEEALELLHEHRIEK 181 (486)
T ss_pred CCCCEEECCCCCHHHHHHHHHHcCCCE
Confidence 67899999999999999999988643
No 181
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.17 E-value=0.0014 Score=62.77 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=57.6
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecC
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITD 998 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~ 998 (1359)
+++++++++++.++++ .+. +.+||+|++|+++|++|.+|+.+... ..++++
T Consensus 2 ~~~~v~~~~~i~~a~~-~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~------------------------~~~v~~ 56 (96)
T cd04614 2 NVPTVWEETPLPVAVR-IMELANVKALPVLDDDGKLSGIITERDLIAKSE------------------------VVTATK 56 (96)
T ss_pred CccEeCCCCcHHHHHH-HHHHcCCCeEEEECCCCCEEEEEEHHHHhcCCC------------------------cEEecC
Confidence 4678999999999999 445 57899998789999999999987320 678899
Q ss_pred CCCHHHHHHHHHHcCCC
Q psy9748 999 QTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 999 dtpLeel~~lm~~~gI~ 1015 (1359)
++++.++.+.|.+++++
T Consensus 57 ~~~l~~a~~~m~~~~~~ 73 (96)
T cd04614 57 RTTVSECAQKMKRNRIE 73 (96)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999998765
No 182
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.17 E-value=0.0037 Score=76.95 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=72.8
Q ss_pred cccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCC---CcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccc
Q psy9748 914 LRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANA---KRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLD 986 (1359)
Q Consensus 914 idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdeg---GrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~ 986 (1359)
.++++.|.+.+++++++++++++.+ +++ +.+||+|++ ++++|+||.+|++... + ....+.
T Consensus 80 k~~~~~~~~~~vtl~~~~tv~eal~-~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~------~------~~~~V~ 146 (450)
T TIGR01302 80 KRAENGIISDPVTISPETTVADVLE-LMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK------D------KGKPVS 146 (450)
T ss_pred ccccCceecCceEeCCCCCHHHHHH-HHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh------c------CCCCHH
Confidence 4566778889999999999999999 555 579999987 7999999999997521 1 113466
Q ss_pred cccc-cccEEecCCCCHHHHHHHHHHcCCC
Q psy9748 987 KILD-MAPITITDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 987 ~im~-~~~~tV~~dtpLeel~~lm~~~gI~ 1015 (1359)
++|+ ..+.+++++++++++.+.|.+++++
T Consensus 147 dvm~~~~~~~V~~~~sl~eal~~m~~~~~~ 176 (450)
T TIGR01302 147 EVMTREEVITVPEGIDLEEALKVLHEHRIE 176 (450)
T ss_pred HhhCCCCCEEECCCCcHHHHHHHHHHcCCC
Confidence 7787 4889999999999999999999865
No 183
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.16 E-value=0.0023 Score=62.33 Aligned_cols=83 Identities=6% Similarity=0.115 Sum_probs=61.7
Q ss_pred CeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCcccccccccc--ccEEec
Q psy9748 924 PITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDM--APITIT 997 (1359)
Q Consensus 924 PiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~--~~~tV~ 997 (1359)
..++++++++.++.+.|.+ +.+||+|+.|+++|+||.+|+++...+... ...+.+.|.. ....+.
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~---------~~~v~~~~~~~~~~~~v~ 73 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWA---------QTTVIQVMTPAAKLVTVL 73 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhcc---------ccchhhhhcccccceEEC
Confidence 4578999999999993323 357899987799999999999987642211 1123344543 256889
Q ss_pred CCCCHHHHHHHHHHcCCC
Q psy9748 998 DQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 998 ~dtpLeel~~lm~~~gI~ 1015 (1359)
++++++++++.|.+++..
T Consensus 74 ~~~~l~~a~~~~~~~~~~ 91 (114)
T cd04801 74 SEESLAEVLKLLEEQGLD 91 (114)
T ss_pred CCCcHHHHHHHHHHCCCC
Confidence 999999999999998865
No 184
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.16 E-value=0.0029 Score=61.48 Aligned_cols=89 Identities=12% Similarity=0.197 Sum_probs=70.5
Q ss_pred ccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEE
Q psy9748 919 ILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPIT 995 (1359)
Q Consensus 919 iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~t 995 (1359)
.|.+.++++.+++++.++...|.+ ..+||+++. +++|+||..|++++......... .+.++|...+.+
T Consensus 4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~-~l~Giit~~di~~~~~~~~~~~~--------~v~~v~~~~~~~ 74 (117)
T COG0517 4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDG-KLVGIITERDILRALAAGGKRLL--------PVKEVMTKPVVT 74 (117)
T ss_pred cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC-EEEEEEEHHHHHHHHhccCCccc--------cHHHhccCCcEE
Confidence 344788999999999999995555 567888776 89999999999998865432221 466777778899
Q ss_pred ecCCCCHHHHHHHHHH-cCCCc
Q psy9748 996 ITDQTPMETVVDMYKK-RSISV 1016 (1359)
Q Consensus 996 V~~dtpLeel~~lm~~-~gI~l 1016 (1359)
+.++.+++++.+.|.+ ++++.
T Consensus 75 ~~~~~~~~~~~~~m~~~~~~~~ 96 (117)
T COG0517 75 VDPDTPLEEALELMVERHKIRR 96 (117)
T ss_pred ECCCCCHHHHHHHHHHHcCcCe
Confidence 9999999999999998 45433
No 185
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.15 E-value=0.0013 Score=64.71 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=67.0
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhcc-CCCCC-CCCCCccccccccccccEEec
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDT-QPQPL-PGAPPILRLDKILDMAPITIT 997 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~-~~~~~-~~~~~~~rv~~im~~~~~tV~ 997 (1359)
.+++++++++++++.+.|.+ +.+||+|+.|+++|++|++|+++...... .++.. ........+.+++...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence 46789999999999994433 56899998789999999999987532110 00000 000122346677878889999
Q ss_pred CCCCHHHHHHHHHHcCCC
Q psy9748 998 DQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 998 ~dtpLeel~~lm~~~gI~ 1015 (1359)
++++++++.+.|.+.+.+
T Consensus 82 ~~~~l~~~~~~~~~~~~~ 99 (122)
T cd04635 82 PDDSIATAVELMLEHDIG 99 (122)
T ss_pred CCCCHHHHHHHHHHcCCC
Confidence 999999999999998754
No 186
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.13 E-value=0.0014 Score=64.69 Aligned_cols=91 Identities=19% Similarity=0.253 Sum_probs=67.0
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCC--C-CCCccccccccccccEE
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLP--G-APPILRLDKILDMAPIT 995 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~--~-~~~~~rv~~im~~~~~t 995 (1359)
.++++++++++.++.+ .++ +.+||+|+ |+++|++|++|+.+.+......+... + ......+.+++...+..
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04637 2 RVVTVEMDDRLEEVRE-IFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPIT 79 (122)
T ss_pred CceEeCCCCCHHHHHH-HHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCee
Confidence 3568999999999999 666 56899998 69999999999998765321111000 0 00112466778888999
Q ss_pred ecCCCCHHHHHHHHHHcCCC
Q psy9748 996 ITDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 996 V~~dtpLeel~~lm~~~gI~ 1015 (1359)
+.++++++++.+.|.+++..
T Consensus 80 v~~~~~l~~~~~~~~~~~~~ 99 (122)
T cd04637 80 VSPDTPVDEASKLLLENSIS 99 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCC
Confidence 99999999999999887753
No 187
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.06 E-value=0.0039 Score=60.31 Aligned_cols=84 Identities=15% Similarity=0.242 Sum_probs=65.2
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecC
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITD 998 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~ 998 (1359)
.+.++++++++.++.+ .++ +.+||+|++ +++|++|.+|+++.+.....+. ....+.+.+......+.+
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~-~~~G~v~~~dl~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~ 73 (112)
T cd04802 2 NVITVDPDTTVYEAAN-IMTENNIGRLIVVDNE-KPVGIITERDLVKKVVSRNLKP------REVPVGEVMSTPLITIDP 73 (112)
T ss_pred CcEEECCCCCHHHHHH-HHHHCCCCEEEEEECC-EEEEEEEHHHHHHHHhhccCCc------ccCCHHHhcCCCcEEECC
Confidence 4667899999999999 555 568999876 9999999999998664321111 122456677777888999
Q ss_pred CCCHHHHHHHHHHcCC
Q psy9748 999 QTPMETVVDMYKKRSI 1014 (1359)
Q Consensus 999 dtpLeel~~lm~~~gI 1014 (1359)
+++++++.+.|.+.+.
T Consensus 74 ~~~l~~~~~~~~~~~~ 89 (112)
T cd04802 74 NASLNEAAKLMAKHGI 89 (112)
T ss_pred CCCHHHHHHHHHHcCC
Confidence 9999999999998875
No 188
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.05 E-value=0.0023 Score=62.83 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=66.9
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCC---CCCCccccccccccccEEe
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLP---GAPPILRLDKILDMAPITI 996 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~---~~~~~~rv~~im~~~~~tV 996 (1359)
+++++++++++.++.+.|-+ +.++|+|+ |+++|++|++|+++.+......+... .......+.+.|......+
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI 80 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEE
Confidence 35678999999999994433 56899998 69999999999998765322111000 0011234667777889999
Q ss_pred cCCCCHHHHHHHHHHcCCC
Q psy9748 997 TDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 997 ~~dtpLeel~~lm~~~gI~ 1015 (1359)
.+++++.++.+.|.+.+..
T Consensus 81 ~~~~~l~~~~~~~~~~~~~ 99 (121)
T cd04633 81 EPDTSVSDVASLMLENNIG 99 (121)
T ss_pred CCCCcHHHHHHHHHHcCCC
Confidence 9999999999999988753
No 189
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.05 E-value=0.0026 Score=60.97 Aligned_cols=79 Identities=9% Similarity=0.225 Sum_probs=61.5
Q ss_pred CeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCC
Q psy9748 924 PITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQ 999 (1359)
Q Consensus 924 PiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~d 999 (1359)
++++++++++.++.+ .|+ +.+||+|+ |+++|++|.+|+.+...+...+. ...+.+.+......++++
T Consensus 3 ~~~v~~~~~~~~~~~-~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~ 73 (110)
T cd04609 3 VVSVAPDDTVSQAIE-RMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAKF-------SLPVREVMGEPLPTVDPD 73 (110)
T ss_pred cEEECCCCcHHHHHH-HHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcccccc-------CcCHHHHhcCCCceeCCC
Confidence 568899999999999 555 57899998 69999999999999764322110 123456677778889999
Q ss_pred CCHHHHHHHHHH
Q psy9748 1000 TPMETVVDMYKK 1011 (1359)
Q Consensus 1000 tpLeel~~lm~~ 1011 (1359)
+++.++.++|.+
T Consensus 74 ~~l~~~~~~~~~ 85 (110)
T cd04609 74 APIEELSELLDR 85 (110)
T ss_pred CcHHHHHHHHHh
Confidence 999999998877
No 190
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.03 E-value=0.0038 Score=60.09 Aligned_cols=82 Identities=11% Similarity=0.231 Sum_probs=64.5
Q ss_pred CeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCC
Q psy9748 924 PITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQ 999 (1359)
Q Consensus 924 PiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~d 999 (1359)
..+++++++++++.+ .++ +.++|+|+ ++++|++|++|+.+...+... ....+.+.|......+.++
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~ 72 (111)
T cd04611 3 ILTCPPDTSLAEAAS-RMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD--------LQTPVGEVMSSPLLTVPAD 72 (111)
T ss_pred ceEECCCCcHHHHHH-HHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC--------CCcCHHHhcCCCceEECCC
Confidence 457899999999999 555 46889888 699999999999987743221 1234566777788899999
Q ss_pred CCHHHHHHHHHHcCCC
Q psy9748 1000 TPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 1000 tpLeel~~lm~~~gI~ 1015 (1359)
+++.++++.|.+.+.+
T Consensus 73 ~~l~~~l~~~~~~~~~ 88 (111)
T cd04611 73 TSLYDARQLMREHGIR 88 (111)
T ss_pred CCHHHHHHHHHHcCCe
Confidence 9999999999887653
No 191
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.03 E-value=0.0026 Score=78.52 Aligned_cols=89 Identities=10% Similarity=0.184 Sum_probs=72.8
Q ss_pred ccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccc
Q psy9748 913 ILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKI 988 (1359)
Q Consensus 913 ~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~i 988 (1359)
.++..++|.++|+++++++++.++.+ +++ +.++|+|++ +++|+||.+|+... + ...++.++
T Consensus 87 ~VKv~eim~~~pvtv~p~~tI~eA~~-lm~~~~~~~~vVvD~g-klvGIVT~rDL~~~-------~------~~~~V~dI 151 (475)
T TIGR01303 87 FVKSRDLVLDTPITLAPHDTVSDAMA-LIHKRAHGAAVVILED-RPVGLVTDSDLLGV-------D------RFTQVRDI 151 (475)
T ss_pred hcchhhccccCCeEECCCCCHHHHHH-HHHhcCCeEEEEEECC-EEEEEEEHHHhhcC-------C------CCCCHHHH
Confidence 35667889999999999999999999 555 457777764 99999999998321 1 11357789
Q ss_pred cccccEEecCCCCHHHHHHHHHHcCCCc
Q psy9748 989 LDMAPITITDQTPMETVVDMYKKRSISV 1016 (1359)
Q Consensus 989 m~~~~~tV~~dtpLeel~~lm~~~gI~l 1016 (1359)
|+..+.+++++++++++.+.|.+++++.
T Consensus 152 Mt~~litv~~~~sL~eAl~lM~~~~i~~ 179 (475)
T TIGR01303 152 MSTDLVTAPADTEPRKAFDLLEHAPRDV 179 (475)
T ss_pred ccCCceEeCCCCcHHHHHHHHHHcCCCE
Confidence 9999999999999999999999998763
No 192
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.02 E-value=0.0031 Score=61.02 Aligned_cols=83 Identities=10% Similarity=0.132 Sum_probs=65.0
Q ss_pred CeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCC
Q psy9748 924 PITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQ 999 (1359)
Q Consensus 924 PiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~d 999 (1359)
..++++++++.++.+ .+. +.++|+|++|+++|+|+.+|+.+.+...... ....+.+.|......+.++
T Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~~-------~~~~v~~~~~~~~~~v~~~ 75 (114)
T cd04604 4 LPLVSPDTSLKDALL-EMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLDI-------LTLPVADVMTRNPKTIDPD 75 (114)
T ss_pred ccccCCCCcHHHHHH-HHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCcc-------ccCCHHHhhccCCeEECCC
Confidence 446889999999999 555 4689999888999999999999877543211 1124667777788899999
Q ss_pred CCHHHHHHHHHHcCC
Q psy9748 1000 TPMETVVDMYKKRSI 1014 (1359)
Q Consensus 1000 tpLeel~~lm~~~gI 1014 (1359)
++++++++.|.+.+.
T Consensus 76 ~~~~~~~~~~~~~~~ 90 (114)
T cd04604 76 ALAAEALELMEENKI 90 (114)
T ss_pred CcHHHHHHHHHHcCC
Confidence 999999999988753
No 193
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.02 E-value=0.0037 Score=60.37 Aligned_cols=82 Identities=11% Similarity=0.181 Sum_probs=65.2
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecC
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITD 998 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~ 998 (1359)
++.+++++.++.++.+ .++ +.+||+|+ |+++|+|+++|+.+...... ....+.+.|...+..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~---------~~~~~~~~~~~~~~~v~~ 71 (110)
T cd04595 3 PVKTVRPEATIEEARE-LLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGL---------GHAPVKDYMSTDVVTVPP 71 (110)
T ss_pred CceEeCCCCcHHHHHH-HHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhccc---------ccCcHHHHhcCCCEEECC
Confidence 4678999999999999 555 46899998 79999999999987652211 122455677778899999
Q ss_pred CCCHHHHHHHHHHcCCC
Q psy9748 999 QTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 999 dtpLeel~~lm~~~gI~ 1015 (1359)
+++++++.+.|.+.+.+
T Consensus 72 ~~~l~~~~~~~~~~~~~ 88 (110)
T cd04595 72 DTPLSEVQELMVEHDIG 88 (110)
T ss_pred CCcHHHHHHHHHHcCCC
Confidence 99999999999988754
No 194
>PF03258 Baculo_FP: Baculovirus FP protein; InterPro: IPR004941 The function of the FP protein is not known. The protein is missing in baculovirus (Few Polyhedra) mutants [].
Probab=97.01 E-value=0.00023 Score=75.87 Aligned_cols=85 Identities=26% Similarity=0.570 Sum_probs=75.1
Q ss_pred eEEeeeccccccccccccccccc----------chhhcccchHhHHHHHHHHHHHHHhhhhcCccceeecccchhhhccc
Q psy9748 1066 IVVRLSNTSVRDKWTTASRSKQL----------YKEKIYINEHLTKANQDLLFKAKKLKEANGYKFVWVRDCKIMIRKNE 1135 (1359)
Q Consensus 1066 iiv~~~~~~~~~~~~~~~~~~~~----------~~~~iyiNe~Lt~~~~~L~~~a~~~~k~~~~k~~w~~~~~i~~rk~~ 1135 (1359)
|+|++....-..+|-++++-.++ ...|||++- +...+.|..++|. +.-..|||+|.--+++|+|+++
T Consensus 92 IlvkL~da~ta~EWq~kSRe~Rlkn~dL~i~~d~~vKIFvAA--p~e~K~LLkkvRd-alLp~fKYIwi~K~GVMvRr~~ 168 (214)
T PF03258_consen 92 ILVKLIDAATANEWQRKSREKRLKNYDLDIDFDGPVKIFVAA--PTEHKQLLKKVRD-ALLPNFKYIWICKRGVMVRRND 168 (214)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhhcccCcCCCCceEEEEeC--CHHHHHHHHHHHH-ccCCcCeEEEEecceeEEecCC
Confidence 89999999888889888875544 258999998 7778889999887 7778999999999999999999
Q ss_pred ccceeeeccccccccccc
Q psy9748 1136 SSRIYVIRNVRDLETYMT 1153 (1359)
Q Consensus 1136 ~~~~~~i~~~~~l~~~~~ 1153 (1359)
.++++.|++++|++++..
T Consensus 169 rS~I~IVKnE~DI~~L~~ 186 (214)
T PF03258_consen 169 RSQIHIVKNENDINYLKS 186 (214)
T ss_pred CCceEEEecHhHHHHHHh
Confidence 999999999999999887
No 195
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.00 E-value=0.003 Score=61.06 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=63.6
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecC
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITD 998 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~ 998 (1359)
+..+++++++++++.+ .++ +.+||+|++|+++|+||++|++... ....+.+.+......+++
T Consensus 3 ~~~~~~~~~~~~~a~~-~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------------~~~~v~~~~~~~~~~v~~ 68 (108)
T cd04596 3 DTGYLTTTDTVKDWHE-LNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD-------------PDTTIEKVMTKNPITVNP 68 (108)
T ss_pred ccEEeCCCCCHHHHHH-HHHHcCCCceeEECCCCeEEEEecHHHHhccc-------------ccccHHHHhcCCCeEECC
Confidence 4568999999999999 555 4689999888999999999997521 012456677778889999
Q ss_pred CCCHHHHHHHHHHcCCC
Q psy9748 999 QTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 999 dtpLeel~~lm~~~gI~ 1015 (1359)
+++++++.+.|.+.+..
T Consensus 69 ~~~l~~~~~~~~~~~~~ 85 (108)
T cd04596 69 KTSVASVAHMMIWEGIE 85 (108)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 99999999999887644
No 196
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.99 E-value=0.0041 Score=63.86 Aligned_cols=91 Identities=11% Similarity=0.162 Sum_probs=65.7
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccC-CCCCC------------C--------
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQ-PQPLP------------G-------- 978 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~-~~~~~------------~-------- 978 (1359)
.++++++++++.++.+.|.+ ..+||+|+ |+++|++|++|+++.+..... ++... +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 46789999999999995554 46899988 699999999999987753221 11000 0
Q ss_pred ----CCCccccccccccccEEecCCCCHHHHHHHHHHcCC
Q psy9748 979 ----APPILRLDKILDMAPITITDQTPMETVVDMYKKRSI 1014 (1359)
Q Consensus 979 ----~~~~~rv~~im~~~~~tV~~dtpLeel~~lm~~~gI 1014 (1359)
......+.+.|......+.+++++.++.+.|.+.+.
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~ 120 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKI 120 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCC
Confidence 001223556677788899999999999999888764
No 197
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.98 E-value=0.004 Score=60.15 Aligned_cols=83 Identities=11% Similarity=0.298 Sum_probs=63.3
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCC-CcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEec
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANA-KRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITIT 997 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdeg-GrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~ 997 (1359)
..+++++++++.++.+ .|. +.++|++++ |+++|++|.+|+++...+...+ ....+.+. ....+.
T Consensus 2 ~~~~i~~~~~i~~a~~-~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~---------~~~~~~~~-~~~~v~ 70 (111)
T cd04590 2 DIVALDADDTLEEILE-LIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEED---------LDLRDLLR-PPLFVP 70 (111)
T ss_pred ceEEEcCCCCHHHHHH-HHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCc---------CCHHHHhc-CCeecC
Confidence 3568999999999999 555 468999887 8999999999999877432110 12333443 567889
Q ss_pred CCCCHHHHHHHHHHcCCCc
Q psy9748 998 DQTPMETVVDMYKKRSISV 1016 (1359)
Q Consensus 998 ~dtpLeel~~lm~~~gI~l 1016 (1359)
+++++.++++.|.+++.+.
T Consensus 71 ~~~~l~~~~~~~~~~~~~~ 89 (111)
T cd04590 71 ESTPLDDLLEEMRKERSHM 89 (111)
T ss_pred CCCcHHHHHHHHHhcCCcE
Confidence 9999999999999987654
No 198
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.96 E-value=0.0048 Score=59.70 Aligned_cols=85 Identities=12% Similarity=0.157 Sum_probs=63.7
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecC
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITD 998 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~ 998 (1359)
...++++++++.++.+ .+. +.++|.++ |+++|++|.+|+.+.+.+...+. ....+.+.|...+..+.+
T Consensus 2 ~~~~v~~~~~~~~~~~-~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~------~~~~v~~~~~~~~~~v~~ 73 (112)
T cd04625 2 TIYTVAPETLLSEAVA-TMAEQDLGSLVVMER-GELVGLLTFREVLQAMAQHGAGV------LDTTVRAIMNPEPIVASP 73 (112)
T ss_pred CcEEECCCCcHHHHHH-HHHHcCCCeEEEeeC-CEEEEEEEHHHHHHHHHhcCCch------hcCCHHHHhCCCCeEECC
Confidence 3567899999999999 555 34555555 69999999999998775321111 113466778778889999
Q ss_pred CCCHHHHHHHHHHcCCC
Q psy9748 999 QTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 999 dtpLeel~~lm~~~gI~ 1015 (1359)
+++++++++.|.+++.+
T Consensus 74 ~~~l~~a~~~m~~~~~~ 90 (112)
T cd04625 74 DDSIDEVRRLMVERHLR 90 (112)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 99999999999987654
No 199
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=96.94 E-value=0.0016 Score=80.24 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=74.1
Q ss_pred ccccccccccCCeEecCCCCHHHHHHHhhc---------ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCcc
Q psy9748 913 ILRLDKILDMAPITITDQTPMETVCGHTFT---------KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPIL 983 (1359)
Q Consensus 913 ~idL~~iMd~sPiTV~~~tpLeeVle~mFr---------R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~ 983 (1359)
...++++|++..+++++++++.++.+ .++ ..++|+|++++++|+|+.+|++.. + +..
T Consensus 130 e~tvg~iMt~~~~~v~~~~tv~eal~-~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a------~-------~~~ 195 (449)
T TIGR00400 130 DDSAGRIMTIEYVELKEDYTVGKALD-YIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA------K-------PEE 195 (449)
T ss_pred cchHHHhCcCceEEECCCCcHHHHHH-HHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC------C-------CCC
Confidence 35689999999999999999999999 554 257888888899999999999752 0 112
Q ss_pred ccccccccccEEecCCCCHHHHHHHHHHcCCC
Q psy9748 984 RLDKILDMAPITITDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 984 rv~~im~~~~~tV~~dtpLeel~~lm~~~gI~ 1015 (1359)
+++++|+..+.+++++++++++.+.|.++++.
T Consensus 196 ~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~ 227 (449)
T TIGR00400 196 ILSSIMRSSVFSIVGVNDQEEVARLIQKYDFL 227 (449)
T ss_pred cHHHHhCCCCeeECCCCCHHHHHHHHHHcCCC
Confidence 47788888899999999999999999998843
No 200
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.94 E-value=0.0048 Score=59.68 Aligned_cols=83 Identities=12% Similarity=0.247 Sum_probs=63.2
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH-HHhhccCCCCCCCCCCccccccccccccEEec
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR-FVQNDTQPQPLPGAPPILRLDKILDMAPITIT 997 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr-~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~ 997 (1359)
.++++++++++.++.+ .+. +.++|+|+ |++.|+++++|++. ...+.. +. ....+.+.|.....++.
T Consensus 2 ~~~~v~~~~~~~~~~~-~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~--~~-----~~~~~~~~~~~~~~~v~ 72 (113)
T cd04622 2 DVVTVSPDDTIREAAR-LMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGR--DP-----DTTTVGDVMTRGVVTVT 72 (113)
T ss_pred CCEEECCCCcHHHHHH-HHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccC--Cc-----ccCCHHHhccCCccEEC
Confidence 4678999999999999 555 56899988 79999999999973 332211 10 11235677777888999
Q ss_pred CCCCHHHHHHHHHHcCC
Q psy9748 998 DQTPMETVVDMYKKRSI 1014 (1359)
Q Consensus 998 ~dtpLeel~~lm~~~gI 1014 (1359)
++++++++.+.|.+.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~ 89 (113)
T cd04622 73 EDDDVDEAARLMREHQV 89 (113)
T ss_pred CCCCHHHHHHHHHHcCC
Confidence 99999999999988765
No 201
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.86 E-value=0.003 Score=76.78 Aligned_cols=92 Identities=4% Similarity=0.142 Sum_probs=72.5
Q ss_pred cccccccccc--CCeEecCCCCHHHHHHHhhc---ceeEEEcCC-CcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccc
Q psy9748 913 ILRLDKILDM--APITITDQTPMETVCGHTFT---KQLLFPANA-KRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLD 986 (1359)
Q Consensus 913 ~idL~~iMd~--sPiTV~~~tpLeeVle~mFr---R~LpVVdeg-GrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~ 986 (1359)
...++++|.+ .+++++.+++++++.+.+.+ .++||.+++ ++++|+|+.||++.+..+ + ...++
T Consensus 190 ~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~----~-------~~~l~ 258 (408)
T TIGR03520 190 NTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK----K-------NFDWQ 258 (408)
T ss_pred CCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc----C-------CCCHH
Confidence 4678999998 67899999999999994444 679998754 589999999999976532 1 11345
Q ss_pred cccccccEEecCCCCHHHHHHHHHHcCCCc
Q psy9748 987 KILDMAPITITDQTPMETVVDMYKKRSISV 1016 (1359)
Q Consensus 987 ~im~~~~~tV~~dtpLeel~~lm~~~gI~l 1016 (1359)
++++ .++.|++++++.++.+.|.+++...
T Consensus 259 ~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~ 287 (408)
T TIGR03520 259 SLLR-EPYFVPENKKLDDLLRDFQEKKNHL 287 (408)
T ss_pred HHcC-CCeEeCCCCcHHHHHHHHHhcCceE
Confidence 5555 4789999999999999999987444
No 202
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.82 E-value=0.0059 Score=58.27 Aligned_cols=78 Identities=12% Similarity=0.148 Sum_probs=63.0
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecC
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITD 998 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~ 998 (1359)
.+.++++++++.++.+ .++ +.+||+|+ ++++|++|.+|+.+... ...+.+.|...+..+++
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~V~d~-~~~~Giv~~~~l~~~~~-------------~~~~~~~~~~~~~~v~~ 66 (105)
T cd04599 2 DPITIDPLDSVGRAAR-LMEKHRIGGLPVVED-GKLVGIITSRDVRRAHP-------------NRLVADAMTREVVTISP 66 (105)
T ss_pred CCEEECCCCcHHHHHH-HHHHcCCCEEEEEEC-CEEEEEEehHHhhcccc-------------cCCHHHHccCCCEEECC
Confidence 4677999999999999 555 46888885 59999999999986320 11356677788999999
Q ss_pred CCCHHHHHHHHHHcCCC
Q psy9748 999 QTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 999 dtpLeel~~lm~~~gI~ 1015 (1359)
++++.++++.|.+.+.+
T Consensus 67 ~~~l~~~~~~~~~~~~~ 83 (105)
T cd04599 67 EASLLEAKRLMEEKKIE 83 (105)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 99999999999998865
No 203
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.80 E-value=0.0031 Score=78.46 Aligned_cols=83 Identities=7% Similarity=0.065 Sum_probs=65.6
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcC---CCcEEEEEeHHHHHHHHhhccCCCCCCCCCCcccccccccc--ccE
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPAN---AKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDM--API 994 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVde---gGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~--~~~ 994 (1359)
.|+++++++++.++++.|-+ +.+||+|+ +|+++|+||.+|+.+. .+ .....++++|+. ...
T Consensus 106 ~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~-----~~------~~~~~V~dIMt~~~~~i 174 (502)
T PRK07107 106 SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS-----RM------SLDTKVKDFMTPFEKLV 174 (502)
T ss_pred CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc-----cc------CCCCCHHHHhCCCCCeE
Confidence 45689999999999994433 56899987 4799999999998531 01 112457788886 678
Q ss_pred EecCCCCHHHHHHHHHHcCCCc
Q psy9748 995 TITDQTPMETVVDMYKKRSISV 1016 (1359)
Q Consensus 995 tV~~dtpLeel~~lm~~~gI~l 1016 (1359)
+++++++++++.+.|.++++..
T Consensus 175 tv~~d~~l~eAl~lM~e~~i~~ 196 (502)
T PRK07107 175 TANEGTTLKEANDIIWDHKLNT 196 (502)
T ss_pred EECCCCcHHHHHHHHHHcCCCE
Confidence 8999999999999999998654
No 204
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.75 E-value=0.0079 Score=58.58 Aligned_cols=84 Identities=18% Similarity=0.328 Sum_probs=61.8
Q ss_pred CCeEecCCCCHHHHHHHhhc--c---eeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEec
Q psy9748 923 APITITDQTPMETVCGHTFT--K---QLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITIT 997 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr--R---~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~ 997 (1359)
.+.++++++++.++.+ .+. + .++|+|+ |+++|++|.+|+++...+... .....+.+.|.....++.
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~-------~~~~~i~~~~~~~~~~v~ 72 (115)
T cd04620 2 HPLTVTPDTPVADAIA-LMSQQGDSSCVLVVEK-GRLLGIFTERDIVRLTAIGKD-------LSDLPIGEVMTQPVVTLQ 72 (115)
T ss_pred CCeEeCCCCcHHHHHH-HHHhcCCCceEEEcCC-CcEEEEEeHHHHHHHHhcCCC-------ccccCHHHhcCCCcEEEe
Confidence 4668899999999999 554 2 3566675 599999999999986643211 011345567777778888
Q ss_pred CC--CCHHHHHHHHHHcCCC
Q psy9748 998 DQ--TPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 998 ~d--tpLeel~~lm~~~gI~ 1015 (1359)
++ +++.++.+.|.+++..
T Consensus 73 ~~~~~~l~~a~~~~~~~~~~ 92 (115)
T cd04620 73 ESEIQDIFTALSLFRQHQIR 92 (115)
T ss_pred cccccCHHHHHHHHHHhCCc
Confidence 77 7899999999998744
No 205
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.71 E-value=0.0037 Score=72.81 Aligned_cols=113 Identities=10% Similarity=0.195 Sum_probs=80.9
Q ss_pred cccccccccc--CCeEecCCCCHHHHHHHhhc----ceeEEEcCC-CcEEEEEeHHHHHHHHhhccCCCCCCCCCCcccc
Q psy9748 913 ILRLDKILDM--APITITDQTPMETVCGHTFT----KQLLFPANA-KRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRL 985 (1359)
Q Consensus 913 ~idL~~iMd~--sPiTV~~~tpLeeVle~mFr----R~LpVVdeg-GrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv 985 (1359)
...++++|.+ ..++++++++++++.+ +++ .++||++++ ++++|+|+.+|++....... . ...+
T Consensus 66 ~~~V~diMtpr~~i~~l~~~~sl~e~~~-~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~--~-------~~~l 135 (292)
T PRK15094 66 DQRVRDIMIPRSQMITLKRNQTLDECLD-VIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA--E-------AFSM 135 (292)
T ss_pred CCEEeEEccchHHEEEEeCCCCHHHHHH-HHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC--C-------cCCH
Confidence 4688999998 5789999999999999 555 578999864 68999999999997653211 0 1124
Q ss_pred ccccccccEEecCCCCHHHHHHHHHHcCCCc---CCccch----hHHHHHHHHHHHHH
Q psy9748 986 DKILDMAPITITDQTPMETVVDMYKKRSISV---TNGQKE----IFLMRFLWDRWETL 1036 (1359)
Q Consensus 986 ~~im~~~~~tV~~dtpLeel~~lm~~~gI~l---p~~~~~----~tl~gli~eLl~~I 1036 (1359)
.++|+. +..+++++++.++.+.|.+.+... .+++.. .|+..++-++++.+
T Consensus 136 ~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei 192 (292)
T PRK15094 136 DKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEI 192 (292)
T ss_pred HHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCC
Confidence 566654 458999999999999999988554 232222 34555555555443
No 206
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.70 E-value=0.0071 Score=58.85 Aligned_cols=73 Identities=16% Similarity=0.292 Sum_probs=59.0
Q ss_pred eEecCCCCHHHHHHHhhc---ceeEEEcC---CCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecC
Q psy9748 925 ITITDQTPMETVCGHTFT---KQLLFPAN---AKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITD 998 (1359)
Q Consensus 925 iTV~~~tpLeeVle~mFr---R~LpVVde---gGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~ 998 (1359)
..++++++++++.+.+.+ +.+||+|+ .|+++|+|+++|+.+.... .|...+..+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~------------------~m~~~~~~v~~ 66 (105)
T cd04591 5 VLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN------------------YIDPSPFTVSP 66 (105)
T ss_pred EEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH------------------hccCCCceECC
Confidence 468899999999994433 45899988 5799999999999887643 45556778999
Q ss_pred CCCHHHHHHHHHHcCCC
Q psy9748 999 QTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 999 dtpLeel~~lm~~~gI~ 1015 (1359)
++++.++.+.|.+++.+
T Consensus 67 ~~~l~~~~~~~~~~~~~ 83 (105)
T cd04591 67 RTSLEKVHQLFRKLGLR 83 (105)
T ss_pred CCcHHHHHHHHHHcCCC
Confidence 99999999999888754
No 207
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.67 E-value=0.0053 Score=60.08 Aligned_cols=85 Identities=15% Similarity=0.256 Sum_probs=64.3
Q ss_pred CeEecCCCCHHHHHHHhhc-----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecC
Q psy9748 924 PITITDQTPMETVCGHTFT-----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITD 998 (1359)
Q Consensus 924 PiTV~~~tpLeeVle~mFr-----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~ 998 (1359)
+.++++++++.++.+ .++ +.++|+|+ |+++|+|+.+|+++.+......+ ......+.+.|...+..+.+
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~----~~~~~~v~~~~~~~~~~v~~ 76 (119)
T cd04598 3 APTVSPDTTVNDVLE-RFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRA----LYGKKPVSEVMDPDPLIVEA 76 (119)
T ss_pred cCccCCCCcHHHHHH-HHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHH----HHcCCcHHHhcCCCcEEecC
Confidence 457899999999999 554 35789999 89999999999987654311100 00122466788888999999
Q ss_pred CCCHHHHHHHHHHcCC
Q psy9748 999 QTPMETVVDMYKKRSI 1014 (1359)
Q Consensus 999 dtpLeel~~lm~~~gI 1014 (1359)
++++.++.+.|.+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~ 92 (119)
T cd04598 77 DTPLEEVSRLATGRDS 92 (119)
T ss_pred CCCHHHHHHHHHcCCc
Confidence 9999999999988753
No 208
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.65 E-value=0.0055 Score=76.20 Aligned_cols=88 Identities=9% Similarity=0.149 Sum_probs=71.2
Q ss_pred ccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCC---CcEEEEEeHHHHHHHHhhccCCCCCCCCCCcccccc
Q psy9748 915 RLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANA---KRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDK 987 (1359)
Q Consensus 915 dL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdeg---GrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~ 987 (1359)
..++.|.++|+++++++++.++.+ +++ +.+||+|++ ++++|+||.+|+... . + ...++.+
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~-lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~-~-----~------~~~~V~d 163 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLE-IKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV-K-----D------KSTPVSE 163 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHH-HHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc-c-----c------CCCCHHH
Confidence 355677888999999999999999 556 568999873 799999999998621 1 1 1235778
Q ss_pred cccc--ccEEecCCCCHHHHHHHHHHcCCC
Q psy9748 988 ILDM--APITITDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 988 im~~--~~~tV~~dtpLeel~~lm~~~gI~ 1015 (1359)
+|+. ...+++++++++++.+.|.++++.
T Consensus 164 iMt~~~~lvtv~~~~sl~eAl~lm~e~~i~ 193 (495)
T PTZ00314 164 VMTPREKLVVGNTPISLEEANEVLRESRKG 193 (495)
T ss_pred hhCCcCCceEeCCCCCHHHHHHHHHHcCCC
Confidence 8876 788999999999999999999866
No 209
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=96.64 E-value=0.00081 Score=84.62 Aligned_cols=134 Identities=16% Similarity=0.149 Sum_probs=83.0
Q ss_pred cccccccccc-ccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCc
Q psy9748 814 STALASDVMQ-PKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGD 892 (1359)
Q Consensus 814 ~~~~V~DVMt-~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~ 892 (1359)
...+|+++|+ ++ +++++++++++++.+.|.+++++.+||+| ++++++|+|+++||.....+...
T Consensus 244 ~~~~V~~iM~~~~-----~~~~~~~~~~~~~~~~m~~~~~~~~PVvd--~~g~lvGiit~~dl~~~~~~~~i-------- 308 (546)
T PRK14869 244 QSIPVSYIMTTED-----LVTFSKDDYLEDVKEVMLKSRYRSYPVVD--EDGKVVGVISRYHLLSPVRKKVI-------- 308 (546)
T ss_pred cCCCHHHhccCCC-----cEEECCCCcHHHHHHHHHhcCCCceEEEc--CCCCEEEEEEHHHhhccccCceE--------
Confidence 4677999999 54 45679999999999999999999999998 67899999999999875421000
Q ss_pred cceecccCCCCCCCCCC-----CCcccccccccccCCeEe---cCCCCHHHHHHHhhc-c---eeEEEcCCCcEEEEEeH
Q psy9748 893 SIVRFVQNDTQPQPLPG-----APPILRLDKILDMAPITI---TDQTPMETVCGHTFT-K---QLLFPANAKRTLEGLRG 960 (1359)
Q Consensus 893 s~v~F~~~~~~p~~~~~-----~~~~idL~~iMd~sPiTV---~~~tpLeeVle~mFr-R---~LpVVdegGrLvGIITr 960 (1359)
.+.............. --+...+.+++...|+.+ +..++.+.+.+ +|+ . ..+++... .+.||+|.
T Consensus 309 -LVD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~-~~~~~~i~~~~~ia~~-ll~gIlsD 385 (546)
T PRK14869 309 -LVDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVAR-MYRENGIEPSPEIAGL-LLAAILSD 385 (546)
T ss_pred -EEcCccccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHH-HHHHcCCCCCHHHHHH-HHHHHHHH
Confidence 0000000000000000 001123456677777655 33566677777 666 2 23444333 56777777
Q ss_pred HHHHH
Q psy9748 961 DSIVR 965 (1359)
Q Consensus 961 kDILr 965 (1359)
.+.++
T Consensus 386 T~~f~ 390 (546)
T PRK14869 386 TLLFK 390 (546)
T ss_pred hcCcc
Confidence 77665
No 210
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.62 E-value=0.0072 Score=58.50 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=59.2
Q ss_pred EecCCCCHHHHHHHhhc-c-------eeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEec
Q psy9748 926 TITDQTPMETVCGHTFT-K-------QLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITIT 997 (1359)
Q Consensus 926 TV~~~tpLeeVle~mFr-R-------~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~ 997 (1359)
+++++++++++++.|.+ . .+||+|++|+++|+||.+|+++. . ....+.+.+......+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~------~-------~~~~v~~~~~~~~~~i~ 67 (109)
T cd04606 1 AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA------D-------PDTPVSDIMDTDVISVS 67 (109)
T ss_pred CccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC------C-------CcchHHHHhCCCCeEEc
Confidence 36788999999984433 3 36889887899999999999751 0 01235567777788999
Q ss_pred CCCCHHHHHHHHHHcCCC
Q psy9748 998 DQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 998 ~dtpLeel~~lm~~~gI~ 1015 (1359)
+++++.++++.|.+.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~ 85 (109)
T cd04606 68 ADDDQEEVARLFEKYDLL 85 (109)
T ss_pred CCCCHHHHHHHHHHcCCc
Confidence 999999999999887653
No 211
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.59 E-value=0.0079 Score=57.75 Aligned_cols=80 Identities=10% Similarity=0.142 Sum_probs=61.1
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecC
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITD 998 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~ 998 (1359)
.+.++++++++.++.+ .+. +.++|+|++|+++|++|++|+++.. + ....+.+.|...+..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~------~------~~~~v~~~~~~~~~~~~~ 69 (110)
T cd04601 3 DPITVSPDATVAEALE-LMAEYGISGLPVVDDDGKLVGIVTNRDLRFET------D------LDKPVSEVMTPENLLTTV 69 (110)
T ss_pred CCeEeCCCCcHHHHHH-HHHHcCCceEEEEcCCCEEEEEEEhhHeeecc------c------CCCCHHHhcccCceEEec
Confidence 4678999999999999 554 4689999878999999999986421 0 112355677666666666
Q ss_pred -CCCHHHHHHHHHHcCCC
Q psy9748 999 -QTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 999 -dtpLeel~~lm~~~gI~ 1015 (1359)
+++++++.+.|.+.+.+
T Consensus 70 ~~~~l~~~~~~~~~~~~~ 87 (110)
T cd04601 70 EGTSLEEALELLHEHKIE 87 (110)
T ss_pred CCCCHHHHHHHHHHhCCC
Confidence 99999999999988753
No 212
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=96.58 E-value=0.0082 Score=69.63 Aligned_cols=93 Identities=13% Similarity=0.220 Sum_probs=78.3
Q ss_pred ccccccccc--cCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCcccccc
Q psy9748 913 ILRLDKILD--MAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDK 987 (1359)
Q Consensus 913 ~idL~~iMd--~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~ 987 (1359)
-+.+.++|+ ..+-.+.+++++++-.+...+ .+.||+|+..+++|++|.+|+... .+....++
T Consensus 187 I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~-------------~~~t~ieK 253 (432)
T COG4109 187 IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK-------------KPSTTIEK 253 (432)
T ss_pred eeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC-------------CCCccHHH
Confidence 467889998 467789999999999994344 458999999899999999999752 23456889
Q ss_pred ccccccEEecCCCCHHHHHHHHHHcCCCcCC
Q psy9748 988 ILDMAPITITDQTPMETVVDMYKKRSISVTN 1018 (1359)
Q Consensus 988 im~~~~~tV~~dtpLeel~~lm~~~gI~lp~ 1018 (1359)
+|+..|+++.+.+++..++++|.-.++.+-+
T Consensus 254 VMtknp~tv~~~tsVAsvaq~MiwE~iem~P 284 (432)
T COG4109 254 VMTKNPITVRAKTSVASVAQMMIWEGIEMLP 284 (432)
T ss_pred HhccCCeeecccchHHHHHHHHHhccceeee
Confidence 9999999999999999999999999977644
No 213
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.56 E-value=0.0045 Score=61.83 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=61.2
Q ss_pred CCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHh--hccCCCCCCCCCCccccccccccccEEe
Q psy9748 923 APITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQ--NDTQPQPLPGAPPILRLDKILDMAPITI 996 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~--~~~~~~~~~~~~~~~rv~~im~~~~~tV 996 (1359)
++++++++++++++++ .++ +.++|+|++|+++|+||.+|+.+... ...+.. ......++.++|......+
T Consensus 2 ~~~~v~~~~~i~~a~~-~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~~v~~im~~~~~~~ 77 (126)
T cd04640 2 KPIVIPADTSIDEALE-LMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGG---ISRSELTVADVMTPKEDLK 77 (126)
T ss_pred CCeEECCCCcHHHHHH-HHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcC---CCchheEHHHhcCchhhhc
Confidence 3678999999999999 555 57899998779999999999986221 000000 0011234566776544332
Q ss_pred ------cCCCCHHHHHHHHHHcCCC
Q psy9748 997 ------TDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 997 ------~~dtpLeel~~lm~~~gI~ 1015 (1359)
.+++++.++++.|.+++.+
T Consensus 78 ~~~~~~~~~~~l~~~l~~m~~~~~~ 102 (126)
T cd04640 78 ALDLEELENASVGDVVETLKASGRQ 102 (126)
T ss_pred cccHHHhccCcHHHHHHHHHHCCCc
Confidence 3688999999999998865
No 214
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.56 E-value=0.012 Score=56.43 Aligned_cols=78 Identities=9% Similarity=0.138 Sum_probs=61.8
Q ss_pred cCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEec
Q psy9748 922 MAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITIT 997 (1359)
Q Consensus 922 ~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~ 997 (1359)
+.+++++.++++.++.+ .++ ..++|+|+ ++++|+++.+|+++. . ....+.+.+...+..+.
T Consensus 2 ~~~~~v~~~~~~~~~~~-~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~-----~--------~~~~~~~~~~~~~~~v~ 66 (107)
T cd04610 2 RDVITVSPDNTVKDVIK-LIKETGHDGFPVVDN-GKVVGIVSARDLLGK-----D--------PDETVEEIMSKDLVVAV 66 (107)
T ss_pred CCcEEECCCCcHHHHHH-HHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc-----C--------ccccHHHhCCCCCeEEC
Confidence 34678999999999999 555 35788887 699999999999752 0 01236677777889999
Q ss_pred CCCCHHHHHHHHHHcCC
Q psy9748 998 DQTPMETVVDMYKKRSI 1014 (1359)
Q Consensus 998 ~dtpLeel~~lm~~~gI 1014 (1359)
++++++++.+.|.+.+.
T Consensus 67 ~~~~l~~~~~~~~~~~~ 83 (107)
T cd04610 67 PEMDIMDAARVMFRTGI 83 (107)
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 99999999999988764
No 215
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.55 E-value=0.0096 Score=57.31 Aligned_cols=75 Identities=9% Similarity=-0.026 Sum_probs=59.9
Q ss_pred eEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCCC
Q psy9748 925 ITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQT 1000 (1359)
Q Consensus 925 iTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~dt 1000 (1359)
+++++++++.++.+ .++ ..+||+|+ |+++|+++.+|+.+... ..+.+.|.....++.++.
T Consensus 4 ~~v~~~~~~~~~~~-~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~--------------~~~~~~~~~~~~~v~~~~ 67 (104)
T cd04594 4 IKVKDYDKVYEAKR-IMIENDLLSLPVVDY-NKFLGAVYLKDIENATY--------------GDVVDYIVRGIPYVRLTS 67 (104)
T ss_pred eEECCCCCHHHHHH-HHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhcc--------------cchhhhhhcCCcEEcCCC
Confidence 56899999999999 555 46899988 79999999999986311 113345667788999999
Q ss_pred CHHHHHHHHHHcCCC
Q psy9748 1001 PMETVVDMYKKRSIS 1015 (1359)
Q Consensus 1001 pLeel~~lm~~~gI~ 1015 (1359)
+++++.+.|.+++.+
T Consensus 68 ~l~~a~~~~~~~~~~ 82 (104)
T cd04594 68 TAEEAWEVMMKNKTR 82 (104)
T ss_pred CHHHHHHHHHHcCcc
Confidence 999999999988754
No 216
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.53 E-value=0.0075 Score=75.14 Aligned_cols=86 Identities=7% Similarity=0.040 Sum_probs=69.1
Q ss_pred ccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcC---CCcEEEEEeHHHHHHHHhhccCCCCCCCCCCcccccccc
Q psy9748 917 DKILDMAPITITDQTPMETVCGHTFT----KQLLFPAN---AKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKIL 989 (1359)
Q Consensus 917 ~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVde---gGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im 989 (1359)
+..|.++|+++++++++.++.+ ++. +.+||+|+ +|+++|+||.+|+.... + ...++.++|
T Consensus 103 ~~gmi~dpvtV~pd~tV~dA~~-lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~------~------~~~~V~eIM 169 (505)
T PLN02274 103 RVGFVSDPVVKSPSSTISSLDE-LKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN------D------RETKLSEVM 169 (505)
T ss_pred cccccCCCeeeCCCCcHHHHHH-HHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc------c------cCCcHHHHh
Confidence 3347788999999999999999 555 56899987 37999999999996421 0 123577888
Q ss_pred ccc--cEEecCCCCHHHHHHHHHHcCCC
Q psy9748 990 DMA--PITITDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 990 ~~~--~~tV~~dtpLeel~~lm~~~gI~ 1015 (1359)
+.. ..+++++++++++.+.|.++++.
T Consensus 170 t~~~~lvtv~~~~sL~eAl~~m~~~~~~ 197 (505)
T PLN02274 170 TSDDDLVTAPAGIDLEEAEAVLKDSKKG 197 (505)
T ss_pred ccCCCcEEECCCCCHHHHHHHHHHcCCC
Confidence 866 77999999999999999998865
No 217
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.50 E-value=0.0039 Score=61.81 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=47.9
Q ss_pred ccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHH
Q psy9748 816 ALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNL 877 (1359)
Q Consensus 816 ~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~ 877 (1359)
.+++|+|.++ +..+++++++.++.+.|.++++..+||++ ++++++|+|+.+||..
T Consensus 58 ~~v~dim~~~-----~~~v~~~~~l~~a~~~~~~~~~~~lpVvd--~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRK-----PVTARPNDPLREALNLMHEHNIRTLPVVD--DDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCC-----CCEECCcCcHHHHHHHHHHcCCCEEEEEC--CCCeEEEEEEHHHhhc
Confidence 6699999875 34568999999999999999999999997 5679999999999863
No 218
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.48 E-value=0.0035 Score=62.12 Aligned_cols=51 Identities=10% Similarity=0.178 Sum_probs=45.2
Q ss_pred cccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHH
Q psy9748 914 LRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVR 965 (1359)
Q Consensus 914 idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr 965 (1359)
..++++|.+.+.++++++++.++++ .|+ +.+||+|++|+++|+||.+|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~-~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALN-LMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHH-HHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 5688999999999999999999999 555 57999998889999999999864
No 219
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.40 E-value=0.014 Score=57.08 Aligned_cols=81 Identities=7% Similarity=0.127 Sum_probs=61.6
Q ss_pred CCeEecCCCCHHHHHHHhhc---ceeEEEcC---CCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEe
Q psy9748 923 APITITDQTPMETVCGHTFT---KQLLFPAN---AKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITI 996 (1359)
Q Consensus 923 sPiTV~~~tpLeeVle~mFr---R~LpVVde---gGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV 996 (1359)
.+.++++++++.++.+.|-+ +.++|+|+ +|+++|+|+.+|++... . . ...++++|......+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~-~----~-------~~~v~~~~~~~~~~~ 70 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT-D----S-------ETPLSEVMTPREVLV 70 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh-c----c-------CCCHHHhcCCCceEE
Confidence 46788999999999994433 46899986 57999999999987421 0 0 123567777777777
Q ss_pred cC--CCCHHHHHHHHHHcCCC
Q psy9748 997 TD--QTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 997 ~~--dtpLeel~~lm~~~gI~ 1015 (1359)
.. ++++.++.+.|.+.+.+
T Consensus 71 ~~~~~~~l~~~l~~~~~~~~~ 91 (114)
T cd04602 71 VAPTGITLEEANEILRESKKG 91 (114)
T ss_pred ECCCCCCHHHHHHHHHhcCCC
Confidence 66 99999999999998765
No 220
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.16 E-value=0.028 Score=53.94 Aligned_cols=78 Identities=9% Similarity=0.099 Sum_probs=60.2
Q ss_pred CeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccccccccccEEecCCC
Q psy9748 924 PITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQT 1000 (1359)
Q Consensus 924 PiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~im~~~~~tV~~dt 1000 (1359)
..++++++++.++.+.+-+ ..++|++++++++|+++++|+++.. .+ ..+.+.+...+..+.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~----~~---------~~~~~~~~~~~~~v~~~~ 69 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP----EE---------EQLALLMTRDPPTVSPDD 69 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc----cc---------chHHHHhcCCCceECCCC
Confidence 4578889999999984433 4689998878999999999997521 00 124556777788899999
Q ss_pred CHHHHHHHHHHcCC
Q psy9748 1001 PMETVVDMYKKRSI 1014 (1359)
Q Consensus 1001 pLeel~~lm~~~gI 1014 (1359)
+++++.+.|.+.+.
T Consensus 70 ~l~~~~~~~~~~~~ 83 (106)
T cd04638 70 DVKEAAKLMVENNI 83 (106)
T ss_pred CHHHHHHHHHHcCC
Confidence 99999999988875
No 221
>KOG1764|consensus
Probab=96.10 E-value=0.031 Score=67.42 Aligned_cols=165 Identities=13% Similarity=0.096 Sum_probs=111.4
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCccceecccCCCCCCCCCCCC
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAP 911 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s~v~F~~~~~~p~~~~~~~ 911 (1359)
+.+.+..++-+....+.+++++..||.| .+.+.++.+++.+-++..+....... . |. .... .
T Consensus 165 ~~i~p~~s~l~~~~~l~~~~~~rvpv~d-~~~~~v~~ilt~~rIl~~l~~~~~~~---~------~~------~~l~--~ 226 (381)
T KOG1764|consen 165 VSISPESSLLDAVLLLIKSRIHRVPVID-PETGEVLYILTQRRILKFLWLNGRLL---P------LP------SLLS--K 226 (381)
T ss_pred eeecCcHHHHHHHHHHHhCCccceeeec-ccccceeeehhHHHHHHHHHHhhccc---c------cH------HHhh--C
Confidence 4567888888999999999999999998 45679999999999999886543210 0 00 0000 0
Q ss_pred cccccccccccCCeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCC-CCCccccc
Q psy9748 912 PILRLDKILDMAPITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPG-APPILRLD 986 (1359)
Q Consensus 912 ~~idL~~iMd~sPiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~-~~~~~rv~ 986 (1359)
..-++.--.......+.+++|+.++++ +|. .-+||+|+.|+.+|++++.|+.....+..-...... .......+
T Consensus 227 s~~dl~ig~~~~i~~i~~~~~v~~al~-~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~ 305 (381)
T KOG1764|consen 227 SLSDLGIGTWSNIASISEDTPVIEALK-IMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHR 305 (381)
T ss_pred CHHHhCcchhhhheeecCCCcHHHHHH-HHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHhhhc
Confidence 001111111124668999999999999 666 348999988888999999999877665443332222 11122222
Q ss_pred cccccccEEecCCCCHHHHHHHHHHcCCC
Q psy9748 987 KILDMAPITITDQTPMETVVDMYKKRSIS 1015 (1359)
Q Consensus 987 ~im~~~~~tV~~dtpLeel~~lm~~~gI~ 1015 (1359)
..-....+++.+..++.+++..+..+.+.
T Consensus 306 ~~~~~~vvtc~~~ssL~~vi~~lv~~~vH 334 (381)
T KOG1764|consen 306 PIRFEGVVTCRPTSTLAEVIDKLVAHRVH 334 (381)
T ss_pred ccccCccEEEeecchHHHHHHHHHhcCce
Confidence 33333478899999999999998887643
No 222
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.84 E-value=0.019 Score=70.41 Aligned_cols=96 Identities=10% Similarity=0.179 Sum_probs=79.6
Q ss_pred ccccccccccCCeEecCCCCHHHHHHHhhc---------ceeEEEcCCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCcc
Q psy9748 913 ILRLDKILDMAPITITDQTPMETVCGHTFT---------KQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPIL 983 (1359)
Q Consensus 913 ~idL~~iMd~sPiTV~~~tpLeeVle~mFr---------R~LpVVdegGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~ 983 (1359)
+-....+|+...++++++.++.++++ ..| .++.|+|+.++++|+|+.++++.. .+..
T Consensus 131 e~taG~~Mt~e~v~l~~~~Tv~~al~-~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a-------------~~~~ 196 (451)
T COG2239 131 EDTAGRIMTTEFVTLPEDVTVDEALD-RIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA-------------EPDE 196 (451)
T ss_pred hhhhhccceeeeEEeccCcCHHHHHH-HHHHhcccccccceEEEECCccceEEEeeHHHHhcC-------------CcHh
Confidence 34678899999999999999999999 555 358999999899999999999852 2345
Q ss_pred ccccccccccEEecCCCCHHHHHHHHHHcC---CCcCCccch
Q psy9748 984 RLDKILDMAPITITDQTPMETVVDMYKKRS---ISVTNGQKE 1022 (1359)
Q Consensus 984 rv~~im~~~~~tV~~dtpLeel~~lm~~~g---I~lp~~~~~ 1022 (1359)
.+.++|...+..|.++++.+++++.+.+++ +++.+++.+
T Consensus 197 ~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~ 238 (451)
T COG2239 197 LLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNR 238 (451)
T ss_pred HHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCc
Confidence 688899999999999999999999999999 344444433
No 223
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=95.53 E-value=0.03 Score=44.73 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=36.7
Q ss_pred CeEecCCCCHHHHHHHhhc----ceeEEEcCCCcEEEEEeHHHHHHHH
Q psy9748 924 PITITDQTPMETVCGHTFT----KQLLFPANAKRTLEGLRGDSIVRFV 967 (1359)
Q Consensus 924 PiTV~~~tpLeeVle~mFr----R~LpVVdegGrLvGIITrkDILr~l 967 (1359)
+.++++++++.++.+ .|+ ++++|++++++++|+++.+|+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALE-LLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHH-HHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 467899999999999 666 5689998877999999999998764
No 224
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=94.84 E-value=0.077 Score=42.33 Aligned_cols=45 Identities=36% Similarity=0.468 Sum_probs=39.4
Q ss_pred EeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHH
Q psy9748 833 LTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAI 879 (1359)
Q Consensus 833 iv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL 879 (1359)
.+++++++.++.+.+.+.+++.+||++ ++++++|+++.+++...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 4 TVSPDTTLEEALELLREHGIRRLPVVD--EEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred EecCCCcHHHHHHHHHHhCCCcccEEC--CCCeEEEEEEHHHHHHhh
Confidence 457899999999999999999999997 457899999999997654
No 225
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.72 E-value=0.085 Score=63.81 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=70.4
Q ss_pred cccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCc
Q psy9748 813 ASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGD 892 (1359)
Q Consensus 813 l~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~ 892 (1359)
..-++++++|.+.. .....+-+ ..+.+++.+...|+++ |+++..+...+....
T Consensus 271 ~~~l~a~~~m~~~~-----~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---------- 323 (382)
T TIGR03415 271 LNVLTARSLMRPLT-----DLEHVDGG-----WCVSDRRDTWLFTIDK-------QVRRRDAKLPVQAWA---------- 323 (382)
T ss_pred ccceeHHHHhcccc-----cccccCcc-----hhhhhcccceeEeecc-------ceecccchHhHhhcc----------
Confidence 34567899996532 12222211 2223367777778862 888887765443210
Q ss_pred cceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc--ceeEEEcCCCcEEEEEeHHHHHHHHhh
Q psy9748 893 SIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT--KQLLFPANAKRTLEGLRGDSIVRFVQN 969 (1359)
Q Consensus 893 s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr--R~LpVVdegGrLvGIITrkDILr~l~~ 969 (1359)
...++.+ +.....++++++++.+++..+-+ .-++|+|+ |+++|+|++.++++.+.+
T Consensus 324 -------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 324 -------------------AEQEVES-LEAAPTVINPDTLMRDVLAARHRTGGAILLVEN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred -------------------cccchhh-hcccCcccCCCCcHHHHHHHHhcCCCCeEEeeC-CeEEEEEeHHHHHHHHhc
Confidence 0113445 55567789999999999994433 34788887 699999999999998753
No 226
>PRK11573 hypothetical protein; Provisional
Probab=93.81 E-value=0.21 Score=61.21 Aligned_cols=115 Identities=10% Similarity=0.135 Sum_probs=78.5
Q ss_pred cccccccccc--CCeEecCCCCHHHHHHHhhc----ceeEEEcCC-CcEEEEEeHHHHHHHHhhccCCCCCCCCCCcccc
Q psy9748 913 ILRLDKILDM--APITITDQTPMETVCGHTFT----KQLLFPANA-KRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRL 985 (1359)
Q Consensus 913 ~idL~~iMd~--sPiTV~~~tpLeeVle~mFr----R~LpVVdeg-GrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv 985 (1359)
...++++|.+ ..++++.+++++++.+ .++ .++||.+++ +.++|+|..||++....+. ++ .....+
T Consensus 186 ~~~v~eiMtPr~~i~~l~~~~~~~e~~~-~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~--~~-----~~~~~l 257 (413)
T PRK11573 186 KVTVDDIMVPRNEIVGIDINDDWKSILR-QLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK--KE-----FTKENM 257 (413)
T ss_pred CCChhhcCCccceEEEEECCCCHHHHHH-HHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc--Cc-----CCHHHH
Confidence 4678899987 4568999999999999 665 569998643 6899999999999764321 11 011122
Q ss_pred ccccccccEEecCCCCHHHHHHHHHHcCCCcC---Cccch----hHHHHHHHHHHHHH
Q psy9748 986 DKILDMAPITITDQTPMETVVDMYKKRSISVT---NGQKE----IFLMRFLWDRWETL 1036 (1359)
Q Consensus 986 ~~im~~~~~tV~~dtpLeel~~lm~~~gI~lp---~~~~~----~tl~gli~eLl~~I 1036 (1359)
.+.+ .+++.|++.+++.++.+.|.+++..+- +++.. .|+-.++-++++.+
T Consensus 258 ~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei 314 (413)
T PRK11573 258 LRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF 314 (413)
T ss_pred Hhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCC
Confidence 2333 357889999999999999999985543 33222 34444555555544
No 227
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=92.15 E-value=0.58 Score=57.65 Aligned_cols=94 Identities=4% Similarity=0.135 Sum_probs=70.6
Q ss_pred ccccccccccC--CeEecCCCCHHHHHHHhhc---ceeEEEc-CCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccc
Q psy9748 913 ILRLDKILDMA--PITITDQTPMETVCGHTFT---KQLLFPA-NAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLD 986 (1359)
Q Consensus 913 ~idL~~iMd~s--PiTV~~~tpLeeVle~mFr---R~LpVVd-egGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~ 986 (1359)
...++++|.+. .+.++.+.+.+++.+.+.+ .++||.+ +-+.++|+|+.||++++...... +... .
T Consensus 205 ~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~~~~--------~ 275 (429)
T COG1253 205 DRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-DLDL--------R 275 (429)
T ss_pred CcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-ccch--------h
Confidence 46788999884 4588999999999994434 5799998 44689999999999998765432 1111 0
Q ss_pred cccccccEEecCCCCHHHHHHHHHHcCCCc
Q psy9748 987 KILDMAPITITDQTPMETVVDMYKKRSISV 1016 (1359)
Q Consensus 987 ~im~~~~~tV~~dtpLeel~~lm~~~gI~l 1016 (1359)
.... +++.|++.+++.++.+.|.+....+
T Consensus 276 ~~~~-~~~~Vpet~~~~~lL~~~r~~~~hm 304 (429)
T COG1253 276 VLVR-PPLFVPETLSLSDLLEEFREERTHM 304 (429)
T ss_pred hccc-CCeEecCCCcHHHHHHHHHHhCCeE
Confidence 1111 6788999999999999999877444
No 228
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.10 E-value=0.34 Score=56.58 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=71.1
Q ss_pred ccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCCcc
Q psy9748 814 STALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDS 893 (1359)
Q Consensus 814 ~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~~s 893 (1359)
.-.++++||.+.. +. ..-.+...-....+.+.+......-+++ .+++.+|+|...++..+
T Consensus 272 ~VltA~~IM~~~~--~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~--~~~~~~g~v~~~~~~~~--------------- 331 (386)
T COG4175 272 RVLTAKDIMRRPD--LL-IRKTPGDGPRVALKLLRDEGREYGYAVD--RGNKFVGVVSIDSLVKA--------------- 331 (386)
T ss_pred heeeHHHhhcccc--cc-cccccccccchhhhhhhhccchhhHHHh--ccCceeeEEeccchhcc---------------
Confidence 3456889998621 11 1111222333455555555544444444 45568888877655432
Q ss_pred ceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc--ceeEEEcCCCcEEEEEeHHHHHHHHhh
Q psy9748 894 IVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT--KQLLFPANAKRTLEGLRGDSIVRFVQN 969 (1359)
Q Consensus 894 ~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr--R~LpVVdegGrLvGIITrkDILr~l~~ 969 (1359)
.+++.+.++..++++.+.+..+-+ ..++|+|+.++++|+|++.++++.+..
T Consensus 332 -------------------------~~~~~~~~v~~d~~~~~~~~~~~~~~~p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 -------------------------ALIDDVLTVDADTPLSEILARIRQAPCPVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred -------------------------cccccccccCccchHHHHHHHHhcCCCceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 233445678899999998883333 458999999999999999999998754
No 229
>KOG2550|consensus
Probab=89.87 E-value=0.33 Score=57.81 Aligned_cols=59 Identities=29% Similarity=0.412 Sum_probs=51.9
Q ss_pred ccccccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHH
Q psy9748 814 STALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAI 879 (1359)
Q Consensus 814 ~~~~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL 879 (1359)
+...++|+|++++ ++.+.+.+++++.++|++++-..+|||+ +++.++-+|+|.||.+..
T Consensus 169 ~~~~~~~vmt~~~-----~~~~~gi~l~~~neiL~~~kkGkl~iv~--~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 169 NSLLVSDVMTKNP-----VTGAQGITLKEANEILKKIKKGKLPVVD--DKGELVAMLSRTDLMKNR 227 (503)
T ss_pred ccchhhhhccccc-----ccccccccHHHHHHHHHhhhcCCcceec--cCCceeeeeehhhhhhhc
Confidence 3566899999972 5678899999999999999999999998 688999999999998763
No 230
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=88.53 E-value=0.81 Score=55.17 Aligned_cols=57 Identities=25% Similarity=0.237 Sum_probs=48.6
Q ss_pred cccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHh
Q psy9748 817 LASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIAN 881 (1359)
Q Consensus 817 ~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~ 881 (1359)
.+.+.|.+. ...+++++++.++...+.++++. +||+| ++++++|+|++.++..++..
T Consensus 303 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~v~~--~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 303 GLQDVLIDD-----IYTVDAGTLLRETVRKVLKAGIK-VPVVD--EDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred chhhhhccC-----CceECCCCcHHHHHHHHHhCCCC-EEEEC--CCCcEEEEEEHHHHHHHHHh
Confidence 466777654 34578999999999999999999 99997 67899999999999999854
No 231
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=88.27 E-value=0.41 Score=57.80 Aligned_cols=127 Identities=18% Similarity=0.237 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCC---CcCCccc--hhHHHHHHHHHHHHHHhhccCCCcccceecccccccc---ccCCccceEEeeecc
Q psy9748 1002 METVVDMYKKRSI---SVTNGQK--EIFLMRFLWDRWETLGNKLGIPDCMKDVHKAHRVNTL---AKNKIKPIVVRLSNT 1073 (1359)
Q Consensus 1002 Leel~~lm~~~gI---~lp~~~~--~~tl~gli~eLl~~Ig~~~ni~~~~~~I~k~~Ri~~~---~~~~~~~iiv~~~~~ 1073 (1359)
++++-....+.+| .+|++.+ ......++-+++......+.- ....+|..|||.+.. ...+||.|||+|..-
T Consensus 181 l~DlEnrsRRnNiRIiGiPEg~e~~~k~~~~~l~~ii~e~~p~L~~-e~~i~IerahR~~~~~~~~~~~PR~iIvKfl~f 259 (370)
T PF02994_consen 181 LDDLENRSRRNNIRIIGIPEGEEEEGKGPENFLEEIIPENFPNLPK-ETDIEIERAHRSPRPKPPKGQRPRPIIVKFLRF 259 (370)
T ss_dssp HHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHHH-CHHHH-HT---EEEEEEESSSS-TTSSS--EEEEEESSH
T ss_pred HHHHHhhccCCceeEEecCCCccccccCHHHHHHHHHHHhCcCccc-ccchhhhhhhcccCCCCCccCCcCeEEEEecCc
Confidence 4555555555553 5566543 234556666776654332211 122468889998753 245689999999999
Q ss_pred ccccccccccccc---ccchhhcccchHhHH---HHHHHHHHHHHhhhhcCccceeecccch
Q psy9748 1074 SVRDKWTTASRSK---QLYKEKIYINEHLTK---ANQDLLFKAKKLKEANGYKFVWVRDCKI 1129 (1359)
Q Consensus 1074 ~~~~~~~~~~~~~---~~~~~~iyiNe~Lt~---~~~~L~~~a~~~~k~~~~k~~w~~~~~i 1129 (1359)
..|++++.+++.+ .+...+||+-+-|+. ..|.-|..+++..+++|.||-|.=...-
T Consensus 260 ~~KE~IL~aAR~~~~~~~~g~~I~if~DlS~~~l~kRr~~~~i~~~Lr~~~i~~~~~YPakL 321 (370)
T PF02994_consen 260 QDKEKILKAAREKGQLTYKGKRIRIFPDLSPETLQKRRKFNPIKKKLREKGIKYRLLYPAKL 321 (370)
T ss_dssp HHHHHHHHHHHHHS-EEETTEEEEEECTSTHHHHHHHHHHHHHHHHHHHTTS--EEETTTEE
T ss_pred ccHHHHHHHHHhcCceeeCCCceEEeCCCCHHHHHHHHHHHHHHHHHHHcCCCccccCcchh
Confidence 9999999887754 345678898887766 5788999999999999999999655543
No 232
>KOG2118|consensus
Probab=87.91 E-value=0.51 Score=59.05 Aligned_cols=126 Identities=12% Similarity=0.133 Sum_probs=84.7
Q ss_pred cccccccccccccCCCCeEEEeCCCCCHH-HHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHhhhhhccCCCC
Q psy9748 813 ASTALASDVMQPKHSDPLSVLTQDSMTVQ-DVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRG 891 (1359)
Q Consensus 813 l~~~~V~DVMt~~~~~pLvviv~~~~TV~-el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~~~~~~~~~~~ 891 (1359)
+....++|+|+|-.+ +...+.+..+. +....+.+++|+++||.+.+ ....+|.+....+...+..
T Consensus 201 l~ek~~~evmtpi~~---~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~-~~~~i~~~L~~~~~~~~~~---------- 266 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIED---VFALDANTKLDRETVGEIVKHGYSRIPVYEQE-PKNKIGGLLVMNLLRLLQV---------- 266 (498)
T ss_pred HHHHHHHHhccchhh---heeeccccccchHHHhhHhhcCcceeeeccCc-ccchhhHHHHhhhhhhhcc----------
Confidence 345678999999754 34445555554 55666779999999999743 3444444333332222210
Q ss_pred ccceecccCCCCCCCCCCCCcccccccccccCCeEecCCCCHHHHHHHhhc---ceeEEEcCCCcEEEEEeHHHHHHHHh
Q psy9748 892 DSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFT---KQLLFPANAKRTLEGLRGDSIVRFVQ 968 (1359)
Q Consensus 892 ~s~v~F~~~~~~p~~~~~~~~~idL~~iMd~sPiTV~~~tpLeeVle~mFr---R~LpVVdegGrLvGIITrkDILr~l~ 968 (1359)
+ ......++.+.+...-.-+++++++-+..+ .|+ .|+.|+.++..-.+++|..|+ +...
T Consensus 267 ---------~-------~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~-~~~~~~~H~~~v~~~~~~~~~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 267 ---------E-------VPLEPLPVSESALLRLPLVPENMPLLDLLN-EFQKGKSHMAVVRNGHVDIFVLTLEDL-EEVV 328 (498)
T ss_pred ---------c-------cccccccchhhhccccccCCCcccHHHHHH-HHhhhhceeEEEecCCcceeeEeccch-hhhc
Confidence 0 012345677777777778999999999999 888 678887777789999999999 6665
Q ss_pred hc
Q psy9748 969 ND 970 (1359)
Q Consensus 969 ~~ 970 (1359)
.+
T Consensus 329 ~e 330 (498)
T KOG2118|consen 329 KE 330 (498)
T ss_pred ce
Confidence 33
No 233
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=82.68 E-value=1.6 Score=52.08 Aligned_cols=117 Identities=14% Similarity=0.208 Sum_probs=81.0
Q ss_pred cccccccccc--CCeEecCCCCHHHHHHHhhc---ceeEEEc-CCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCccccc
Q psy9748 913 ILRLDKILDM--APITITDQTPMETVCGHTFT---KQLLFPA-NAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLD 986 (1359)
Q Consensus 913 ~idL~~iMd~--sPiTV~~~tpLeeVle~mFr---R~LpVVd-egGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~ 986 (1359)
.++++|+|.+ ....++.+.|.+++++.+.. .++||-. +-+.++|++..+|+++.+.+..+.... ...+
T Consensus 199 ~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~----d~~~-- 272 (423)
T COG4536 199 NLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKE----DILR-- 272 (423)
T ss_pred cceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHh----HHHH--
Confidence 4778899876 35689999999999996666 4578864 335799999999999999765431110 0111
Q ss_pred cccccccEEecCCCCHHHHHHHHHHcCCCc---CCccch----hHHHHHHHHHHHHHH
Q psy9748 987 KILDMAPITITDQTPMETVVDMYKKRSISV---TNGQKE----IFLMRFLWDRWETLG 1037 (1359)
Q Consensus 987 ~im~~~~~tV~~dtpLeel~~lm~~~gI~l---p~~~~~----~tl~gli~eLl~~Ig 1037 (1359)
....||-|+..||+.+-...|.++.-++ .+++.. .|+-.++-|+++.+.
T Consensus 273 --~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 273 --AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred --HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcccc
Confidence 1245899999999999988888776332 223222 466666666666665
No 234
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=80.76 E-value=2.9 Score=51.16 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=46.7
Q ss_pred cccccccccCCCCeEEEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHHh
Q psy9748 817 LASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIAN 881 (1359)
Q Consensus 817 ~V~DVMt~~~~~pLvviv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~~ 881 (1359)
.+.+.|.+. ...++++++++++...+.++.+. +|||| ++++++|+|++.+++.++..
T Consensus 338 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~v~~--~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 338 GLDAALIDA-----PLAVDAQTPLSELLSHVGQAPCA-VPVVD--EDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred chhhhhccC-----CceeCCCCCHHHHHHHHHhCCCc-EEEEC--CCCcEEEEEEHHHHHHHHHh
Confidence 455666544 34578999999999999987766 99997 68999999999999999854
No 235
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=77.58 E-value=2.1 Score=40.33 Aligned_cols=58 Identities=10% Similarity=0.269 Sum_probs=42.7
Q ss_pred cccEEecCCCCHHHHHHHHHHcCCCcCCccchhHHHHHHHHHHHHH---HhhccCC--Ccccceecc
Q psy9748 991 MAPITITDQTPMETVVDMYKKRSISVTNGQKEIFLMRFLWDRWETL---GNKLGIP--DCMKDVHKA 1052 (1359)
Q Consensus 991 ~~~~tV~~dtpLeel~~lm~~~gI~lp~~~~~~tl~gli~eLl~~I---g~~~ni~--~~~~~I~k~ 1052 (1359)
...+.++++++++++.+.+ ++.+|+ +++.|++|++.+.++++ |++..+. .+.++|.+.
T Consensus 5 ~~~~~v~G~~~l~~l~~~~---~~~l~~-~~~~Tl~G~i~~~l~~iP~~Ge~~~i~~~~~~~~V~~~ 67 (81)
T PF03471_consen 5 DGTYIVSGSTPLDDLNELL---GLDLPE-EDYDTLGGLILEQLGRIPEVGERVEIELENYEFEVLEM 67 (81)
T ss_dssp TSEEEEETTSBHHHHHHHH---TS-TTT-TTTSBHHHHHHHHHTSS--TTSEEEEEETTEEEEEEEE
T ss_pred CCEEEEEecCCHHHHHHHH---CcCCCc-cchhhHHHHHHHHcCCCCCCCeEEEEEcCCEEEEEEEe
Confidence 3568899999999998865 567887 57789999999999988 5533344 555555553
No 236
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=55.37 E-value=14 Score=41.79 Aligned_cols=90 Identities=11% Similarity=0.299 Sum_probs=59.8
Q ss_pred cccccccccC--CeEecCCCCHHHHHHHhhc---ceeEEEc-CCCcEEEEEeHHHHHHHHhhccCCCCCCCCCCcccccc
Q psy9748 914 LRLDKILDMA--PITITDQTPMETVCGHTFT---KQLLFPA-NAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDK 987 (1359)
Q Consensus 914 idL~~iMd~s--PiTV~~~tpLeeVle~mFr---R~LpVVd-egGrLvGIITrkDILr~l~~~~~~~~~~~~~~~~rv~~ 987 (1359)
+.++++|-+. -++++.+.++.+.+..+.+ .+.||+. +...+.||+.-||+++++...++.- .+.+
T Consensus 67 l~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F---------~i~~ 137 (293)
T COG4535 67 LRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPF---------DIKE 137 (293)
T ss_pred hhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccc---------cHHH
Confidence 5678888763 5789999999999996666 5678874 3458999999999999986654321 1112
Q ss_pred ccccccEEecCCCCHHHHHHHHHHcC
Q psy9748 988 ILDMAPITITDQTPMETVVDMYKKRS 1013 (1359)
Q Consensus 988 im~~~~~tV~~dtpLeel~~lm~~~g 1013 (1359)
+.+ +..-|+..-.+.-+++-+....
T Consensus 138 lLR-Pav~VPESKrvd~lLkeFR~~R 162 (293)
T COG4535 138 LLR-PAVVVPESKRVDRLLKEFRSQR 162 (293)
T ss_pred hcc-cceecccchhHHHHHHHHHhhc
Confidence 221 2234555556666666555443
No 237
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=44.25 E-value=40 Score=41.22 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=37.3
Q ss_pred EeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHH
Q psy9748 833 LTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIA 880 (1359)
Q Consensus 833 iv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~ 880 (1359)
.++++++++|+.....++++. +||++ +++++|+|++.+++.+|.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~-~~v~~---~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 337 VINPDTLMRDVLAARHRTGGA-ILLVE---NGRIVGVIGDDNIYHALL 380 (382)
T ss_pred ccCCCCcHHHHHHHHhcCCCC-eEEee---CCeEEEEEeHHHHHHHHh
Confidence 468999999999988887654 78876 499999999999998874
No 238
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=32.89 E-value=49 Score=38.41 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=21.6
Q ss_pred ceeEEEcCCCcEEEEEeHHHHHHH
Q psy9748 943 KQLLFPANAKRTLEGLRGDSIVRF 966 (1359)
Q Consensus 943 R~LpVVdegGrLvGIITrkDILr~ 966 (1359)
..+||+|++|+++|.||+.|++.+
T Consensus 285 ~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 285 SVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred ceeEEECCCCcEeeEEEHHHHhhh
Confidence 458999999999999999999864
No 239
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=30.93 E-value=38 Score=25.56 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.2
Q ss_pred hHHHHHHhhHhhhhhhhcCCCcc
Q psy9748 212 KKREILSAAAAAGVSVAFGAPIG 234 (1359)
Q Consensus 212 ~~r~ll~agaaAGvaa~FgaPig 234 (1359)
.||++|-.++++|.+++++.+.+
T Consensus 3 sRR~fLk~~~a~~a~~~~~~~~~ 25 (26)
T PF10518_consen 3 SRRQFLKGGAAAAAAAALGGCAG 25 (26)
T ss_pred cHHHHHHHHHHHHHHHHhccccC
Confidence 58999999999999999988764
No 240
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=26.67 E-value=98 Score=37.09 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=37.2
Q ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEEeCCCCeEEEEEEhHHHHHHHH
Q psy9748 832 VLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIA 880 (1359)
Q Consensus 832 viv~~~~TV~el~~lL~~~~~sgfPVVds~~d~~LVG~Isr~DLl~aL~ 880 (1359)
..+..++++.++...+.+.+. -+||+| ++++++|+|++.++..+|.
T Consensus 338 ~~v~~d~~~~~~~~~~~~~~~-p~aVvd--e~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 338 LTVDADTPLSEILARIRQAPC-PVAVVD--EDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccCccchHHHHHHHHhcCCC-ceeEEc--CCCcEEEEecHHHHHHHHh
Confidence 456778888888877776543 478887 8899999999999999985
Done!