RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9748
(1359 letters)
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 208 bits (530), Expect = 9e-57
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 42/189 (22%)
Query: 110 YTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEIKTILSGFI--IRGYLGKWTLII 167
Y+ ++ + L+ + + A GSG+P++K+ILSGF +R L L
Sbjct: 48 RFAGYILYVVSGVALCLLSTFWCAVLSTEAEGSGLPQMKSILSGFYDKMRSALELRVLFA 107
Query: 168 KSVGIMLAVSAGLSLGKEGPMVHIASCIGNILSYL--FPKYGRNEAKKREILSAAAAAGV 225
K++G++ A+ GL +G EGP VHIA I + L F + + A + + L+AA A G+
Sbjct: 108 KALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKELCTDRALRLQTLAAACAVGL 167
Query: 226 SVAFGAPIGGVLFSLEEVSFFLFFRIFHLEMEGRRRRGRPRLRWVDMIHNDIEKEVSYYF 285
+ +FGAP+GGVL+S+E ++ ++
Sbjct: 168 ASSFGAPLGGVLYSIE--------------------------------------TIASFY 189
Query: 286 PLKTLWRSF 294
++ W+
Sbjct: 190 LVQAFWKGV 198
Score = 163 bits (413), Expect = 9e-42
Identities = 61/361 (16%), Positives = 118/361 (32%), Gaps = 81/361 (22%)
Query: 614 WLCVLLVGLVTDKFIGCCNFFECFAFSDYVINHNATSTSNPTTSEAGPGVYTAVWLLMIT 673
+ V +V L + F + ++ AT + L++
Sbjct: 273 YFLVGVVALFA----SALQYP----FRLFALDPRATINDLFKAVPLYQTDHFGWTELILM 324
Query: 674 LVLKLVLTVFTFGIKVPCG-------------RLYLALFEQNKQGTYLSFYF---IYFSV 717
++K +L + G+ +P G RLY G + F I
Sbjct: 325 PIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLY---------GELMRVVFGNAIVPGS 375
Query: 718 SLVVIMFELTGGVRYIVPLMAAAMASKWHKKLKTLFRLSLVVIMFELTGGVRYIVPLMAA 777
Y V AA A LS VI+FE+TG +R++VP++ +
Sbjct: 376 --------------YAVVGAAAFTAG-------VTRALSCAVIIFEVTGQIRHLVPVLIS 414
Query: 778 AMASKWVGDALGKQGIYDAHIMLNAYPFLDSKEEFASTAL-ASDVMQPKHSDPLSVLTQD 836
+ + VG+A + +Y+ +++ P++ S + A ++M P L D
Sbjct: 415 VLLAVIVGNAFNR-SLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIE--GEPHLFPD 471
Query: 837 SMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVR 896
S L K FPV+ + YL+G + R+++ + + +
Sbjct: 472 SEPQHIKGILEKFPNRLVFPVI--DANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTL 529
Query: 897 FVQN---------------------DTQPQPLPGAPPILRLDKILDMAPITITDQTPMET 935
+ + + P L D++PI +T + +
Sbjct: 530 VLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQ 589
Query: 936 V 936
+
Sbjct: 590 L 590
Score = 99.1 bits (247), Expect = 3e-21
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 1283 TRDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPFLDSKEE 1342
TR +S VI+FE+TG +R++VP++ + + + VG+A + +Y+ +++ P++
Sbjct: 389 TRALSCAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNR-SLYETLVLMKHLPYMPILRR 447
Query: 1343 FASTAL-ASDVMQPK 1356
S + A ++M P
Sbjct: 448 DRSPEMTAREIMHPI 462
Score = 50.9 bits (122), Expect = 3e-06
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 414 YTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPE 450
Y+ ++ + L+ + + A GSG+P+
Sbjct: 48 RFAGYILYVVSGVALCLLSTFWCAVLSTEAEGSGLPQ 84
Score = 34.7 bits (80), Expect = 0.23
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 7 LAGSVAGIIDIGSSWMSDLKYGLCPEAFWL 36
A +D+ + +L+ + A
Sbjct: 20 TAALFIFAVDLAVHGLEELRMKISRLAGRF 49
Score = 34.7 bits (80), Expect = 0.23
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 314 LAGSVAGIIDIGSSWMSDLKYGLCPEAFWL 343
A +D+ + +L+ + A
Sbjct: 20 TAALFIFAVDLAVHGLEELRMKISRLAGRF 49
>2j9l_A Chloride channel protein 5; ION channel, ION transport,
voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP:
d.37.1.1 PDB: 2ja3_A*
Length = 185
Score = 122 bits (308), Expect = 6e-32
Identities = 75/132 (56%), Positives = 99/132 (75%), Gaps = 3/132 (2%)
Query: 806 LDSKEEFASTALASDVMQPKHSDP-LSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQ 864
+++KEEFA LA DVM+P+ +DP L+VLTQDSMTV+DVET++ ET ++GFPVVVSRESQ
Sbjct: 1 MEAKEEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQ 60
Query: 865 YLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAP 924
LVGFVLRRDL ++I NA++ +G+ SI+ F + P P PP L+L ILD++P
Sbjct: 61 RLVGFVLRRDLIISIENARKKQDGVVSTSIIYF--TEHSPPLPPYTPPTLKLRNILDLSP 118
Query: 925 ITITDQTPMETV 936
T+TD TPME V
Sbjct: 119 FTVTDLTPMEIV 130
Score = 34.9 bits (80), Expect = 0.081
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 912 PILRLDKILDMAPIT---ITDQTPMETVCGHTFTKQLLF-PANAKRTLEGLRGDSIVRFV 967
+ ++ I+ + + + + G + L+ NA++ +G+ SI+ F
Sbjct: 35 TVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYF- 93
Query: 968 QNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVVDMYKKRSI 1014
+ P P PP L+L ILD++P T+TD TPME VVD+++K +
Sbjct: 94 -TEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGL 139
Score = 34.5 bits (79), Expect = 0.12
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 1337 LDSKEEFASTALASDVMQPKLRE 1359
+++KEEFA LA DVM+P+ +
Sbjct: 1 MEAKEEFAHKTLAMDVMKPRRND 23
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 123 bits (311), Expect = 1e-29
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 8/168 (4%)
Query: 87 GGVLLQWL-TWAEVMGSNKEGFMAYTLEYVFFIAWAL--LFASLAAGLVRMFAPYACGSG 143
G + S +A + + + +L+ L++ FAP GSG
Sbjct: 45 LGAGFKSAVNNMLQWRSQLAQILAPIPPLAWLVTALISGGMVALSFWLMKRFAPDTSGSG 104
Query: 144 IPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVHIASCIGNILSYLF 203
IP+I+ L G + + L IK VG L++ AG+ G EGP + + IG + F
Sbjct: 105 IPQIEGHLEGK--LPLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWF 162
Query: 204 PKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFFLFFRI 251
+ +R +++ A AG++ AF AP+ GV EE+ +
Sbjct: 163 ---KATQENQRILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQT 207
Score = 50.8 bits (122), Expect = 2e-06
Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 16/133 (12%)
Query: 666 AVWLLMITLVLKLVLTVFTFGIKVPCGRLYLALFEQNKQGTYLSFYFIYFSVSLVVIMFE 725
L++ + +LT+ +G G L + +S L
Sbjct: 321 HFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLG----IASIVSVAMARHFHLLFPSQIP 376
Query: 726 LTGGVRYIVPLMAAAMASKWHKKLKTLFR--LSLVVIMFELTGGVRYIVPLMAAAMASKW 783
+ M A +A+ R L+ +++ E+T I+PL+ + +
Sbjct: 377 EPAV--MAIAGMGALVAA--------TVRAPLTAILLTIEMTDNYFVILPLLVTCLVASV 426
Query: 784 VGDALGKQGIYDA 796
V +ALG + IY
Sbjct: 427 VAEALGGKPIYTV 439
Score = 43.9 bits (104), Expect = 3e-04
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 1289 VVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDA 1327
+++ E+T I+PL+ + + V +ALG + IY
Sbjct: 401 ILLTIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYTV 439
Score = 41.2 bits (97), Expect = 0.002
Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 8/126 (6%)
Query: 120 WALLFASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAG 179
W G++ +F G + + L + + ++ +G
Sbjct: 285 WKGFLLGSIIGILSLFPLPLTDGGDNAVLWAFNSQSHFSTLI-LVFCGRFLLTLICYGSG 343
Query: 180 LSLGKEGPMVHIASCIGNILSYLFPKYGRNEAKKREILS----AAAAAGVSVAFGAPIGG 235
G PM+ IAS + ++ F ++ + +++ A A AP+
Sbjct: 344 AIGGIFAPMLGIASIVSVAMARHFHLLFPSQIPEPAVMAIAGMGALVAATV---RAPLTA 400
Query: 236 VLFSLE 241
+L ++E
Sbjct: 401 ILLTIE 406
Score = 36.2 bits (84), Expect = 0.069
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 392 GVLLQWL-TWAEVMGSNKEGFMAYTLEYVFFIAWAL--LFASLAAGLVRMFAPYACGSGI 448
G + S +A + + + +L+ L++ FAP GSGI
Sbjct: 46 GAGFKSAVNNMLQWRSQLAQILAPIPPLAWLVTALISGGMVALSFWLMKRFAPDTSGSGI 105
Query: 449 PEAL 452
P+
Sbjct: 106 PQIE 109
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 121 bits (305), Expect = 6e-29
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 5/165 (3%)
Query: 90 LLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEIKT 149
+ WL MG+ Y L + + A LVR +AP A GSGIPEI+
Sbjct: 56 GVAWLQNQ-RMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEG 114
Query: 150 ILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVHIASCIGNILSYLFPKYGRN 209
L R L +K G + + G+ LG+EGP V I IG ++ +F +
Sbjct: 115 ALEDQ--RPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRL--KG 170
Query: 210 EAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSFFLFFRIFHL 254
+ + +L+ AAAG++ AF AP+ G+LF +EE+ + + +
Sbjct: 171 DEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISI 215
Score = 51.2 bits (123), Expect = 1e-06
Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 16/133 (12%)
Query: 666 AVWLLMITLVLKLVLTVFTFGIKVPCGRLYLALFEQNKQGTYLSFYFIYFSVSLVVIMFE 725
++ +L+ V +++ T+ F P G L GT L F +V L
Sbjct: 329 SMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLA----LGTVLGTAFGMVAVELFPQYHL 384
Query: 726 LTGGVRYIVPLMAAAMASKWHKKLKTLFR--LSLVVIMFELTGGVRYIVPLMAAAMASKW 783
G + + M A +A+ R L+ ++++ E+T + I+P++ + +
Sbjct: 385 EAGT--FAIAGMGALLAA--------SIRAPLTGIILVLEMTDNYQLILPMIITGLGATL 434
Query: 784 VGDALGKQGIYDA 796
+ G + +Y A
Sbjct: 435 LAQFTGGKPLYSA 447
Score = 44.7 bits (106), Expect = 2e-04
Identities = 7/39 (17%), Positives = 21/39 (53%)
Query: 1289 VVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDA 1327
++++ E+T + I+P++ + + + G + +Y A
Sbjct: 409 IILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSA 447
Score = 43.5 bits (103), Expect = 4e-04
Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 2/124 (1%)
Query: 119 AWALLFASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSA 178
GL+ AP G G I +G G L + + + + +L S+
Sbjct: 292 VLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLV-FIFVARVITTLLCFSS 350
Query: 179 GLSLGKEGPMVHIASCIGNILSYLFPKYGRNEAKKREILSAAA-AAGVSVAFGAPIGGVL 237
G G PM+ + + +G + + + + A A ++ + AP+ G++
Sbjct: 351 GAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGII 410
Query: 238 FSLE 241
LE
Sbjct: 411 LVLE 414
Score = 34.7 bits (80), Expect = 0.24
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 394 LLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEAL 452
+ WL MG+ Y L + + A LVR +AP A GSGIPE
Sbjct: 56 GVAWLQNQ-RMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIE 113
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase
(CBS) domains containing protein, transport protein;
1.60A {Homo sapiens}
Length = 164
Score = 70.4 bits (172), Expect = 5e-14
Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 21/133 (15%)
Query: 804 PFLDSKEEFASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRES 863
P + + + M ++ L +D +++V ++ T+ +P+V S ES
Sbjct: 1 PRILGRNIGSHHVRVEHFMNH----SITTLAKD-TPLEEVVKVVTSTDVTEYPLVESTES 55
Query: 864 QYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMA 923
Q LVG V R L A+ + P IL +
Sbjct: 56 QILVGIVQRAQLVQAL----------------QAEPPSRAPGHQQCLQDILARGCPTEPV 99
Query: 924 PITITDQTPMETV 936
+T+ +T +
Sbjct: 100 TLTLFSETTLHQA 112
Score = 31.9 bits (72), Expect = 0.66
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 826 HSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIAN 881
++P+++ T+ + L K V VG V ++ AI+N
Sbjct: 95 PTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVT---SRGRAVGCVSWVEMKKAISN 147
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.4 bits (174), Expect = 2e-12
Identities = 106/663 (15%), Positives = 192/663 (28%), Gaps = 228/663 (34%)
Query: 246 FLFFRIFHLEMEGRRRRGRPRLRWVDMIHNDIEKEVSYYFPLKTLWRSFPFSIYIRSI-- 303
FL I E R + D ++ND + F + R P+ + +R
Sbjct: 93 FLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQV-----FAKYNVSRLQPY-LKLRQALL 145
Query: 304 ---PTKWMCDKFELAGSVAGIIDIGSSWM-----SDLKYGLCPE--AFWLNKEQCCWSSN 353
P K + + G++ G +W+ K + FWLN
Sbjct: 146 ELRPAKNVL--------IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--------- 188
Query: 354 ETSFEDTGNCSQPKPLQQHQQHFHYDILNNYEDVNKPPGVLLQWLTWAEVMGSNKEGFMA 413
NC+ P+ + + Q Y I N+ S +
Sbjct: 189 ------LKNCNSPETVLEMLQKLLYQIDPNWT--------------------SRSDHSSN 222
Query: 414 YTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEALTHPHSLHSDPLSVLTQDSMTV 473
L S+ A L R+ + + + L L VL + V
Sbjct: 223 IKLR----------IHSIQAELRRLLK----------SKPYENCL----L-VL--LN--V 253
Query: 474 QDVETNYRERERGGQKYPWALFPAGYSGPKFRCLGLDREKAEKEMGNGRTLSLSEDEGII 533
Q+ + W F C + L + + +
Sbjct: 254 QNAKA-------------WNAF-------NLSC---------------KILLTTRFKQVT 278
Query: 534 DITTSGTMNERHLAEQINISHGSGFLDSDEIPGIGQYEDFHTIDWQRDLARDRMRHRYIV 593
D ++ T I++ H S L DE+ + + Q DL R+
Sbjct: 279 DFLSAATTTH------ISLDHHSMTLTPDEVKSL--LLKYLDCRPQ-DLPRE-------- 321
Query: 594 KRKQN----SII-DLIKGAHDAWSGWLCVLLVGLVT--DKFIGCCN-------FFECFAF 639
N SII + I+ W W V L T + + F F
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 640 SDYV-INHNATSTSNPTTSEAGPGVYTAVWLLMITLVLKLVLTVFTFGIKVPCGRLYLAL 698
I PT + + +W +I + +V+ Y +
Sbjct: 382 PPSAHI---------PT------ILLSLIWFDVIKSDVMVVVNKL---------HKYSLV 417
Query: 699 FEQNKQGTYLSFYFIYFSVSL-VVIMFELTGGV--RYIVP-------------------- 735
+Q K+ T S IY + + + + L + Y +P
Sbjct: 418 EKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 736 ----LMAAAMASKWHKKLKTLFRLSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQ 791
L + TLFR+ + F L +R+ A AS + + L +
Sbjct: 477 IGHHLKNIEHPERM-----TLFRMVFLDFRF-LEQKIRHDST---AWNASGSILNTLQQL 527
Query: 792 GIYDAHIMLNAYPF---LDSKEEFASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLK 848
Y +I N + +++ +F +++ K++D L + ++ + E + +
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKI-EENLICSKYTD----LLRIALM-AEDEAIFE 581
Query: 849 ETE 851
E
Sbjct: 582 EAH 584
Score = 54.5 bits (130), Expect = 2e-07
Identities = 96/608 (15%), Positives = 192/608 (31%), Gaps = 166/608 (27%)
Query: 767 GVRYIVPLM---AAAMASKWVGDALGKQGIYDAHIMLNAYPFLDSKEEFASTALASDVMQ 823
G + + M K+V + L Y FL + + ++ Q
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRIN-----------YKFL-------MSPIKTEQRQ 104
Query: 824 PKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAK 883
P + + +D + D + K +N VSR YL LR+ L
Sbjct: 105 PSMMTRMYIEQRDRLY-NDNQVFAK---YN-----VSRLQPYLK---LRQALLELRPAKN 152
Query: 884 RTLEGLRG---DSIVRFVQNDTQPQPLPGAPPILRLDKI--LDMAPITITDQT--PMETV 936
++G+ G + V + Q KI L++ + ++ +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMD-------FKIFWLNLKNCNSPETVLEMLQKL 205
Query: 937 CGH---TFTKQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLD------- 986
+T + +N K + ++ + R +++ L L L
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKPYENCL------LVLLNVQNAKA 258
Query: 987 --------KILDMAPIT-----ITDQTPMETVVDMY-KKRSISVTNGQKEIFLMRFLWDR 1032
KIL +T +TD T + S+++T + + L+++L R
Sbjct: 259 WNAFNLSCKIL----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 1033 WETLGNKLGIPDCMKDVHKAHRVNTLAKNKIKPIVVRLSNTSVRDKWTTASRSKQLYKEK 1092
+ L P + N P + + S+RD T K + +K
Sbjct: 315 PQDL------P------REVLTTN--------PRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 1093 IYINEHLTKANQDLLFKAKKLKEANGYK--FVWVRDCKIMIRK-----NESSRIYVIRNV 1145
+ + +++ ++L + + ++ + V+ I + + V+ V
Sbjct: 355 L---TTIIESSLNVL-EPAEYRKM--FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 1146 RDLETYMTLV---PPQLSRSLQEVSVFLDFA------GYTHVDVLVSH---TDNHTSNDA 1193
L Y +LV P + + S+ S++L+ H +V H S+D
Sbjct: 409 NKLHKY-SLVEKQPKESTISIP--SIYLELKVKLENEYALH-RSIVDHYNIPKTFDSDDL 464
Query: 1194 RVNFGGQQD--IFTFLG---KQFE-GGLQLTFKHI-LSLS--SHGMIVVCFYLNSPPSVS 1244
D ++ +G K E F+ + L + N+ S+
Sbjct: 465 IPP---YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 1245 SLVWPKVSLSNLTAMQTRMVVCTSND------LTLLLTFL-----TLFGTRDVSLVVI-- 1291
+ L L + + ND + +L FL L ++ L+ I
Sbjct: 522 NT------LQQLKFYKPYI---CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Query: 1292 MFELTGGV 1299
M E +
Sbjct: 573 MAE-DEAI 579
Score = 51.8 bits (123), Expect = 2e-06
Identities = 85/670 (12%), Positives = 176/670 (26%), Gaps = 219/670 (32%)
Query: 69 QQHFYYDILNNYE-------DVNKPGGVLLQWLTWAEV-----MGSNKEGFMAYTLEYVF 116
Q+ Y DIL+ +E D + L+ E+ G
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG--------TL 65
Query: 117 FIAWALLFASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAV 176
+ W LL S +V+ F ++ +L Y K+ +M +
Sbjct: 66 RLFWTLL--SKQEEMVQKF-----------VEEVLR----INY--KF--------LMSPI 98
Query: 177 SAGLSLGKEGPMVHIASCIGNILS--YLFPKYGRNEAKKREILSAAA-----AAGVSVAF 229
+ + +F KY + + L A A V +
Sbjct: 99 KT-EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-D 156
Query: 230 GAPIGG---------VLFSLEEVSFFLFFRIFHLEMEGRRRRGRPRLRWVDMIHNDIEK- 279
G + G V S + F+IF L + L + + I+
Sbjct: 157 G--VLGSGKTWVALDVCLSYKVQCKM-DFKIFWLNL-KNCNSPETVLEMLQKLLYQIDPN 212
Query: 280 -----EVSYYFPLKT-----------LWRSFPFSIYI-RSIPTKWMCDKFELAGSV---- 318
+ S L+ + + + + ++ + F L+ +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 319 --AGIIDIGSSW------MSDLKYGLCPE------AFWLN------KEQCC--------- 349
+ D S+ + L P+ +L+ +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 350 -----------W--------SSNETSFEDTGNCSQPKPLQQHQQHFHYD---ILNNYEDV 387
W T E + N +P ++ +D +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK-----MFDRLSVFP--PSA 385
Query: 388 NKPPGVLLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSG 447
+ P +L L W +V+ S+ + L SL
Sbjct: 386 HIPTILLS--LIWFDVIKSDVMVVVN-----------KLHKYSLVEK------------Q 420
Query: 448 IPEALTHPHSLHSDPLSVLTQDSMTVQDVETNYRERERGGQKY-PWALFPA---GYSGPK 503
E+ S++ + L + + + + + L P Y
Sbjct: 421 PKESTISIPSIYLE----LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF--- 473
Query: 504 FRCLG--LDREKAEKEMGNGRTLSLSEDEGIIDITTSGTMNERHLAEQINISHGSGFLDS 561
+ +G L + + M R + L + R L ++I +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFL---------------DFRFLEQKIRHDSTAWNASG 518
Query: 562 DEIPGIGQ---YEDFHTIDWQRDLARDRMRHRYIVKRKQNSIIDLIK--GAHDAWSGWLC 616
+ + Q Y+ + + D R + N+I+D + + S +
Sbjct: 519 SILNTLQQLKFYKPYICDN-------DPKYERLV-----NAILDFLPKIEENLICSKYTD 566
Query: 617 VLLVGLVTDK 626
+L + L+ +
Sbjct: 567 LLRIALMAED 576
Score = 42.9 bits (100), Expect = 0.001
Identities = 83/547 (15%), Positives = 142/547 (25%), Gaps = 180/547 (32%)
Query: 11 VAGIIDIGSSWM-----SDLKYGLCPE--AFWLNKEQCCWSSNETSFEDTGNC-SQGERL 62
+ G++ G +W+ K + FWLN NC S L
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN---------------LKNCNSPETVL 199
Query: 63 KPLQQHQQHFYYDILNNYEDVNKPGGVLLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWAL 122
+ LQ+ Y I N+ + + + + + + Y L
Sbjct: 200 EMLQK----LLYQIDPNWTSRSDHSSNIKLRIHSIQ---AELRRLLKSK-PYEN----CL 247
Query: 123 LFASLA----AGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSA 178
L L A F +C K +L+ T + + +SA
Sbjct: 248 LV--LLNVQNAKAWNAFN-LSC-------KILLT-----------T---RFKQVTDFLSA 283
Query: 179 GLSLGKEGPMVHIASCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLF 238
+ + H + + +L
Sbjct: 284 ATT--THISLDH-------------HSMTLTPDEVKSLL--LKYLDCRP----------Q 316
Query: 239 SL-EEVSFFLFFRI--FHLEMEGRRRRGRPRLRW-------VDMIHNDIEKEVSYYFP-- 286
L EV L + R W D + IE ++ P
Sbjct: 317 DLPREVL-----TTNPRRLSIIAESIRDGL-ATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 287 LKTLWRS---FPFSIYIRSIPTK-----WMCDKFELAGSVAGIIDIGSSWMSDL-KYGLC 337
+ ++ FP S + IPT W V ++ L KY L
Sbjct: 371 YRKMFDRLSVFPPSAH---IPTILLSLIWFDVIKSDVMVV----------VNKLHKYSL- 416
Query: 338 PEAFWLNKEQCCWSSNETS------FEDTGNCSQPKPLQQHQQHF-HYDILNNYEDVNKP 390
+ K T E L H+ HY+I ++ +
Sbjct: 417 -----VEK----QPKESTISIPSIYLELKVKLENEYAL--HRSIVDHYNIPKTFDSDDLI 465
Query: 391 PGVLLQW--------LTWAEVMGSNKEGFMAYTLEYVFF--------IAWALLFASLAAG 434
P L Q+ L E F L++ F AW S+
Sbjct: 466 PPYLDQYFYSHIGHHLKNIE-HPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-GSILNT 523
Query: 435 L--VRMFAPYACGS-GIPEAL---------THPHSLHSDPLSVLTQDSMTVQDVETNYRE 482
L ++ + PY C + E L +L + L + ++ + E + E
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM-AEDEAIFEE 582
Query: 483 RERGGQK 489
+ Q+
Sbjct: 583 AHKQVQR 589
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain,
CBS domains, ION CH regulatory subunit, transport
protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Length = 250
Score = 66.7 bits (161), Expect = 5e-12
Identities = 29/232 (12%), Positives = 66/232 (28%), Gaps = 22/232 (9%)
Query: 804 PFLDSKEEFASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRES 863
P L D+M ++ + T D+ +L++T+ FP V + ++
Sbjct: 1 PELSWSSANKYNIQVGDIM----VRDVTSIAST-STYGDLLHVLRQTKLKFFPFVDTPDT 55
Query: 864 QYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQ--NDTQPQPLPGAPPILRLDKILD 921
L+G + R ++ + + + N G +
Sbjct: 56 NTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEGRNGETGASFTGEAESSFAYIDQE 115
Query: 922 MAPITITDQTPMETVCGHTFTKQLLFPANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPP 981
A + V PA G+ Q ++ + +
Sbjct: 116 DAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEMLTLEE 175
Query: 982 ILRLDK------------ILDMAPITITDQTPMETVVDMYKK---RSISVTN 1018
I R ++ +D +P + + T ++ ++ VT+
Sbjct: 176 IYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS 227
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 1e-07
Identities = 92/655 (14%), Positives = 186/655 (28%), Gaps = 251/655 (38%)
Query: 678 LVLT--VFTFGIKVPCGRLYLALFEQNKQGTYLSFYFIYFSVSL---------------V 720
L L+ + VP ++A Q ++ F+ L
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIA--SQLQEQ---------FNKILPEPTEGFAADDEPTTP 57
Query: 721 VIMFELTGG-VRYIVPLMAAAMASKWHKKLKTLFRLSLVVIMFE---LTGG-VRYIVPLM 775
EL G + Y+ L+ + ++ + L FE L G +
Sbjct: 58 A---ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT------EFENCYLEGNDIH------ 102
Query: 776 AAAMASKWVGDALGKQGIYDAHIMLNAYPFLDSKEEFASTALASDVMQPKHSDPL--SVL 833
A+A+K + + + ++ Y + +A K + L +V
Sbjct: 103 --ALAAKLLQEN--DTTLVKTKELIKNY--------ITARIMAKRPFDKKSNSALFRAVG 150
Query: 834 TQDS--MTV---Q-DVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLE 887
++ + + Q + + +E R+ Y VL DL I + TL
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEEL----------RD-LYQTYHVLVGDL---IKFSAETLS 196
Query: 888 GL------------RGDSIVRFVQN-DTQPQP--LPGAP---PILRLD---------KIL 920
L +G +I+ +++N P L P P++ + K+L
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 921 DMAPITITDQTPMETVCGHTFTKQLL-------------FPANAKRTLE-----GLRGDS 962
P + T + L+ F + ++ + G+R
Sbjct: 257 GFTPGELRSYLKGATGHS----QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC-- 310
Query: 963 IVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVVDMYKK---RSISVTNG 1019
LP P IL D +PM ++ ++ ++ ++ TN
Sbjct: 311 -----YEAYPNTSLP--PSILE-----DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 1020 Q----KEIFLMRFLWDRWETLGNKLGIPDCM-------------KDVHKAHRVNTLAKNK 1062
K++ + +L N G + + KA + L +++
Sbjct: 359 HLPAGKQVEI---------SLVN--G-AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 1063 I-----KPIVVRLSNTSVRDKWTTASR---------SKQLYKEKIYINEHLTKANQDLLF 1108
I K +R S L IN+ L ++ F
Sbjct: 407 IPFSERKLKFS--------------NRFLPVASPFHSHLLVPASDLINKDL--VKNNVSF 450
Query: 1109 KAKKLKEANGYKFVWVRDCKIMIRKNESSRIYVIRNVRDLETYMTLVPPQLSRSLQEVSV 1168
AK ++ +Y + DL + ++ + + V
Sbjct: 451 NAKDIQIP----------------------VYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 1169 F---LDFAGYTHVDVLVSHTDNHTSNDARVNFG--GQQDIFTFLGKQFEG-GLQL 1217
TH+ ++FG G + + +G G+++
Sbjct: 489 KWETTTQFKATHI----------------LDFGPGGASGLGVLTHRNKDGTGVRV 527
Score = 50.0 bits (119), Expect = 6e-06
Identities = 83/516 (16%), Positives = 139/516 (26%), Gaps = 205/516 (39%)
Query: 675 VLKLVLTVFTFGIKVPCGRLYL---------ALFEQNKQGTYLSFYFI---YFSVSLVVI 722
VL L LT F YL A Q T + + Y + + ++
Sbjct: 83 VLNLCLTEFE--------NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT-ARIMA 133
Query: 723 MFELTGGVRYIVPLMAAAMASKWHKKLKTLFRLSLVVIMFELTGGVRYIVPLMAAAMASK 782
L A +L +F GG
Sbjct: 134 KRPFDKKSN--SALFRAVGEGN--AQLVAIF------------GG--------------- 162
Query: 783 WVGDALGKQG-----------IYDAHIMLNAY-PFLDSKEEFASTALASDVMQPKHSDPL 830
QG +Y Y + +F++ L+ + ++ +
Sbjct: 163 --------QGNTDDYFEELRDLYQ------TYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 831 SVLTQDSMTVQDVETLLKETEHNG-----------FPVV-VSRESQYLV-----GF---V 870
TQ ++ L+ + P++ V + + Y+V GF
Sbjct: 209 --FTQ----GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 871 LRRDLN------------LAIA----------NAKRTLE-----GLRGDSIVRFVQNDTQ 903
LR L +AIA + ++ + G+R
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC-------YEAYP 315
Query: 904 PQPLPGAPPILRLDKILDMAPITITDQTPMETVCGHTFTKQLLFPANAKRTLEGLRGDSI 963
LP P IL D +PM ++ T +Q+ +T L
Sbjct: 316 NTSLP--PSILE-----DSLENNEGVPSPMLSISNLTQ-EQVQ--DYVNKTNSHLPAGKQ 365
Query: 964 VRF-VQNDTQ-------PQPLPGAPPILRLDKILDMAPITITDQT--PMETVVDMYKKRS 1013
V + N + PQ L G LR K AP + DQ+ P + +R
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK----APSGL-DQSRIP-------FSER- 412
Query: 1014 ISVTNGQKEIFLMRFL----------------------WDRWETL-GNKLGIPDCMKDVH 1050
K F RFL + + IP + D
Sbjct: 413 -------KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--VYDTF 463
Query: 1051 KAHRVNTLAKNKIKPIVVRLSNTSVRDKWTTASRSK 1086
+ L+ + + IV + V+ W T ++ K
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVK--WETTTQFK 497
Score = 47.7 bits (113), Expect = 3e-05
Identities = 46/360 (12%), Positives = 111/360 (30%), Gaps = 110/360 (30%)
Query: 1064 KPIVVRLSNTSVR-------DKWTTASRSKQLYKEKI------YINEHLTKANQDLL--- 1107
+P+ LS+ S+ + AS+ ++ + + + + + +L+
Sbjct: 7 RPLT--LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 1108 --FKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYVIRNVRDLETYMTLVPPQLSRSLQE 1165
+ + ++ + +F V + + + E+ Y+ N D+ + + +L +
Sbjct: 65 LGYVSSLVEPSKVGQFDQV--LNLCLTEFENC--YLEGN--DIHALAAKLLQENDTTLVK 118
Query: 1166 VSVFLDFAGYTHVDVLVSH--TDNHTS--------NDARV--NFGGQQDIFTFLGKQFEG 1213
+ Y ++ S +A++ FGGQ + + E
Sbjct: 119 TKELI--KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE---E- 172
Query: 1214 GLQLTFK---------------HILSLS----------SHGMIVVCF-----------YL 1237
L+ ++ + L + G+ ++ + YL
Sbjct: 173 -LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 1238 NSPPSVSSLVWPKVSLSNLTAMQTRMVVCTSNDLTLLLTFLTLFGTRDVSLVVIMFELTG 1297
S P +S P L + + +V T L G TG
Sbjct: 232 LSIP-IS---CP---LIGVIQLAHYVVTAKLLGFTPGELRSYLKGA------------TG 272
Query: 1298 GVRYIVPLMAAAMASKWVGDALGKQGIYDAHIMLNAYPF---LDSKEEFASTALASDVMQ 1354
+ +V +A A W + + + F + E + +T+L +++
Sbjct: 273 HSQGLVTAVAIAETDSW-------ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Score = 46.6 bits (110), Expect = 8e-05
Identities = 72/456 (15%), Positives = 120/456 (26%), Gaps = 171/456 (37%)
Query: 125 ASLAA---GLV-RMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAVSAGL 180
A L G V + P G + L+ F YL
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLE------------------- 97
Query: 181 SLGKEGPMVHIASCIGNILSYLFPKYGRNEAKKREILSA--AAAAGVSVAFGAPIGGVLF 238
G + +H + + L + K +E++ A F LF
Sbjct: 98 --GND---IH------ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 239 ---SLEEVSFFLFFRIFHLEMEGRRRRGRPRLRWVDMIHNDIEKEVSYYFP-LKTLWRSF 294
F G G+ + + YF L+ L++++
Sbjct: 147 RAVGEGNAQLVAIF--------G----GQ----------GNTDD----YFEELRDLYQTY 180
Query: 295 PFSI--YIRSI--------PTKWMCDKFELAGSVAGIIDIGSSWMSDLKYGLCPEAFWLN 344
+ I+ T +K G ++I W+ + P+ +L
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-----LNILE-WLENP--SNTPDKDYL- 231
Query: 345 KEQCCWSSNETSFEDTGNCSQPKPLQQHQQHFHYDILNNYEDVNKPPGVLLQWLTWAEVM 404
S S PL Q HY + PG L +L A
Sbjct: 232 ------LSIPISC----------PLIGVIQLAHYVVTAKLLGFT--PGELRSYLKGATGH 273
Query: 405 GSNKEGFMAYTLEYVFFIA----WALLFASLAAGLVRMFAPYACGSGIPEA-LTHPHSLH 459
+G + IA W F S+ + +F G +P++
Sbjct: 274 S---QGLVT-----AVAIAETDSWESFFVSVRKAITVLFF---IGV---RCYEAYPNT-- 317
Query: 460 SDPLSVLTQDSMTVQDVETNYRERERGGQKYPWALFPAGYSGPKFRCLGLDREKAEKEMG 519
S P S+L +DS + P P L +E+ +
Sbjct: 318 SLPPSIL-EDS-------------LENNEGVP---------SPMLSISNLTQEQVQD--- 351
Query: 520 NGRTLSLSEDEGIIDITTSGTMNERHL--AEQINIS 553
++ T N HL +Q+ IS
Sbjct: 352 ------------YVNKT-----N-SHLPAGKQVEIS 369
Score = 39.3 bits (91), Expect = 0.011
Identities = 83/580 (14%), Positives = 160/580 (27%), Gaps = 196/580 (33%)
Query: 25 LKYG------LCPEAFWLNKEQ--------------CCWSSNETS--------F------ 50
L +G L P A + Q + +E + F
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 51 -EDTGNCSQGERLKPLQQHQQHFYYDILNNYEDVNKPGGVLLQWLTWAEVMGSNKEGFMA 109
+ Q +++ L F L D++ A + + +
Sbjct: 71 LVEPSKVGQFDQV--LNLCLTEFENCYLEG-NDIH----------ALAAKLLQENDTTLV 117
Query: 110 YTLEYV--FFIAWAL------------LFASLAAGLVRMFAPYACGSGIPEI-------- 147
T E + + A + LF ++ G ++ A + G G +
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-GQGNTDDYFEELRDL 176
Query: 148 ----KTILSGFI--IRGYLGKWTLIIKSVGIMLAVSAGLSLGK--EGP--------MVHI 191
++ I L LI ++ + GL++ + E P ++ I
Sbjct: 177 YQTYHVLVGDLIKFSAETL--SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 192 A-SC--IG--NILSYL-FPK-YGRNEAKKREILSAA--------AAAGVSVA-----FGA 231
SC IG + Y+ K G + R L A A ++ F
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 232 PIGGVLFSLEEVSFFLFFRIFH------------LEMEGRRRRGRPR--LRWVDMIHNDI 277
+ + V FF+ R + LE G P L ++ +
Sbjct: 295 SVRKAI----TVLFFIGVR-CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 278 EKEVSY---YFPLKTLWRSFPFSIYIRSIPTKWMCDKFELAGSVAGIIDIGSSWMSDLKY 334
+ V+ + P I + + ++G L Y
Sbjct: 350 QDYVNKTNSHLP-----AGKQVEISLVNGA-----KNLVVSGPPQ-----------SL-Y 387
Query: 335 GLCPEAFWLNKEQCCWSSNETS--FEDTGNCSQPKPLQQHQ-----QHFHYDILNNYEDV 387
GL L K + +++ F S+ K ++ FH +L D
Sbjct: 388 GLN---LTLRKAKAPSGLDQSRIPF------SERKLKFSNRFLPVASPFHSHLLVPASD- 437
Query: 388 NKPPGVLLQWLTWAEVMGSNKEGFMAYTLEYVFFIA----WALLFASLAAGLVRMFAPYA 443
++ + L V + K+ + V+ +L S++ +V
Sbjct: 438 -----LINKDLVKNNVSFNAKD--IQIP---VYDTFDGSDLRVLSGSISERIVDCII--- 484
Query: 444 CGSGIP---EALTHPHSLHS---DPLSVLTQDSMTVQDVE 477
+P E T + H P +T ++ +
Sbjct: 485 ---RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Score = 37.3 bits (86), Expect = 0.044
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 47/88 (53%)
Query: 166 IIKSVGIM--LAVSAGLSLGKEGPMVHIASCIGNILSYLFPKYGRNEAKKREILSA-AAA 222
+KS G++ A AG SLG E Y +A A+
Sbjct: 1746 DLKSKGLIPADATFAGHSLG-E---------------Y----------------AALASL 1773
Query: 223 AGVSVAFGAPIGGVLFSLEEVSFFLFFR 250
A V S+E + +F+R
Sbjct: 1774 ADV------------MSIESLVEVVFYR 1789
Score = 36.2 bits (83), Expect = 0.097
Identities = 52/267 (19%), Positives = 80/267 (29%), Gaps = 69/267 (25%)
Query: 715 FSVSLVV--------IMFELTGG--VRYIVPLMAAAMASKWHKKLKTLFR---LSLVVIM 761
FS+ +V I F G +R M K + +F+
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 762 FE-------LTGGVRYIVP-LMAAAMASKWVGDALGKQGIYDAHIMLNAYPFLDSKEEFA 813
F T ++ P L A + L +G+ A +A FA
Sbjct: 1719 FRSEKGLLSAT---QFTQPALTLMEKA---AFEDLKSKGLIPA----DAT--------FA 1760
Query: 814 --S----TALAS--DVMQPKHSDPLSVLTQDSMTVQD-VETLLKETEHNGFPVVVSRESQ 864
S ALAS DVM + V+ MT+Q V E + + ++ +
Sbjct: 1761 GHSLGEYAALASLADVMSI--ESLVEVVFYRGMTMQVAVPR--DELGRSNYGMIAINPGR 1816
Query: 865 YLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQND----TQ------PQPLPGAPPIL 914
F + KRT + IV N Q + L +L
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLV---EIV----NYNVENQQYVAAGDLRALDTVTNVL 1869
Query: 915 RLDKILDMAPITITDQTPMETVCGHTF 941
K+ + I + +E V GH F
Sbjct: 1870 NFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 35.8 bits (82), Expect = 0.12
Identities = 68/385 (17%), Positives = 109/385 (28%), Gaps = 152/385 (39%)
Query: 15 IDIGSSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQGERLKPLQQHQQHFYY 74
++I W+ + P+ +L S S PL Q +Y
Sbjct: 213 LNILE-WLENP--SNTPDKDYL-------LSIPISC-------------PLIGVIQLAHY 249
Query: 75 DILNNYEDVNKPGGVL--LQWLTW-------AEV--MGSNKEGF---MAYTLEYVFFIAW 120
+ PG + L+ T A + E F + + +FFI
Sbjct: 250 VVTAKLLGFT-PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 121 A--LLF--ASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLAV 176
+ SL ++ G+P ML++
Sbjct: 309 RCYEAYPNTSLPPSILE--DSLENNEGVP------------SP-------------MLSI 341
Query: 177 SAGLSLGK-------------EGPMVHIASCIGNILSYLFPKYGRNEAKKREILSAAAAA 223
S L+ + G V I+ L N AK ++S +
Sbjct: 342 S-NLTQEQVQDYVNKTNSHLPAGKQVEIS---------LV-----NGAKNL-VVSGPPQS 385
Query: 224 --GVSVAF---GAPIGG----VLFSLEEVSF---FLFFRI---FHLEMEGRRRRGRPRLR 268
G+++ AP G + FS ++ F FL + FH L
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL--PVASPFH----------SHLLV 433
Query: 269 -WVDMIHNDI-EKEVSYYFPLKTL------------WRSFPFSIY------IRSIPTKWM 308
D+I+ D+ + VS F K + R SI I +P KW
Sbjct: 434 PASDLINKDLVKNNVS--FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 309 -CDKFELAGSVAGIIDIGSSWMSDL 332
+F I+D G S L
Sbjct: 492 TTTQF----KATHILDFGPGGASGL 512
Score = 31.6 bits (71), Expect = 2.7
Identities = 34/184 (18%), Positives = 56/184 (30%), Gaps = 78/184 (42%)
Query: 121 ALLFASLAA-------GLV---RMFA-----PY---ACGSGIPEIKTILSGFIIRGYLGK 162
AL AA GL+ FA Y A + + I++++ RG +
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 163 WTLIIKSVGI----MLAVSAG---LSLGKE-------------GPMVHIA---------- 192
+ +G M+A++ G S +E G +V I
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 193 --------SCIGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVS 244
+ N+L+++ K ++I S SLEEV
Sbjct: 1855 AAGDLRALDTVTNVLNFI---------KLQKI--DIIELQKS-----------LSLEEVE 1892
Query: 245 FFLF 248
LF
Sbjct: 1893 GHLF 1896
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine,
conformational change, unknown function; HET: SAM; 1.60A
{Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A*
Length = 122
Score = 46.4 bits (111), Expect = 4e-06
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 817 LASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLN 876
L D++ P++ ++++ + +L + N P+V E LVG + D+
Sbjct: 2 LVKDILS---KPPITA--HSNISIMEAAKILIKHNINHLPIV--DEHGKLVGIITSWDIA 54
Query: 877 LAIANAKRTLEGL 889
A+A K+T+E +
Sbjct: 55 KALAQNKKTIEEI 67
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for
structural genomics, secsg; 2.59A {Methanocaldococcus
jannaschii dsm 2661ORGANISM_TAXID}
Length = 138
Score = 43.0 bits (102), Expect = 9e-05
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 817 LASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLN 876
DVM + ++ + V + + + + + PV+ + ++G V D+
Sbjct: 9 KVKDVMT---KNVITA--KRHEGVVEAFEKMLKYKISSLPVI--DDENKVIGIVTTTDIG 61
Query: 877 LAIANAKRTLE 887
+ K TLE
Sbjct: 62 YNLIRDKYTLE 72
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox
regulator, plant CBS domain, thiored chloroplast,
membrane protein; 1.91A {Arabidopsis thaliana}
Length = 180
Score = 43.6 bits (103), Expect = 1e-04
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
Query: 818 ASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDL-N 876
D M P+ + V + S +V D LL E + G PV+ ++ LVG V DL
Sbjct: 6 VGDFMTPR-QNLHVV--KPSTSVDDALELLVEKKVTGLPVI--DDNWTLVGVVSDYDLLA 60
Query: 877 LAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETV 936
L + + + + + + Q L + ++ +P+ + D T +E
Sbjct: 61 LDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDA 120
Query: 937 C 937
Sbjct: 121 A 121
Score = 40.5 bits (95), Expect = 0.001
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 818 ASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNL 877
D+M PL V +DS ++D LL ET+ PVV L+G + R ++
Sbjct: 100 VGDLM---TPSPLVV--RDSTNLEDAARLLLETKFRRLPVV--DADGKLIGILTRGNVVR 152
Query: 878 AIANAKRTLEGLRGDSIVR 896
A KR + + G S
Sbjct: 153 AALQIKRNADSISGRSQND 171
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central
glycolytic G regulator, transcription; 1.95A {Bacillus
subtilis} PDB: 3fwr_A* 3fws_A*
Length = 159
Score = 40.8 bits (96), Expect = 6e-04
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 817 LASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLN 876
D S P+ + ++++V D + + VV LVG + R+DL
Sbjct: 18 QVKDFQ----SIPVVI--HENVSVYDAICTMFLEDVGTLFVV--DRDAVLVGVLSRKDLL 69
Query: 877 LAIANAK 883
A +
Sbjct: 70 RASIGQQ 76
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein
structure initiative; 1.40A {Methanothermobacter
thermautotrophicusdelta H} SCOP: d.37.1.1
Length = 125
Score = 39.4 bits (93), Expect = 0.001
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 817 LASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLN 876
DVM +D ++ + +++DV E VV + VG V D+
Sbjct: 2 RVEDVM---VTDVDTI--DITASLEDVLRNYVENAKGSSVVV---KEGVRVGIVTTWDVL 53
Query: 877 LAIANAK 883
AIA
Sbjct: 54 EAIAEGD 60
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown
function; HET: ADP AMP; 2.10A {Methanocaldococcus
jannaschii} PDB: 3lfz_A*
Length = 280
Score = 41.3 bits (97), Expect = 0.001
Identities = 30/277 (10%), Positives = 78/277 (28%), Gaps = 51/277 (18%)
Query: 819 SDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLA 878
+ + + T++ + E ++ PVV + ++ +VG + D+
Sbjct: 7 KIAQ----NKKIVTVYPT-TTIRKALMTMNENKYRRLPVVNAGNNK-VVGIITSMDIVDF 60
Query: 879 IANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETVCG 938
+ ++ + + A + +I++ IT+ + ++
Sbjct: 61 MG------------GGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAI- 107
Query: 939 HTFTKQLLFPANAKRTLEGLRGDSIVRFV-QNDTQPQPLPGAPPILRLDKILDMAPITIT 997
+ N + ++ + + D L +D + I T
Sbjct: 108 -----ETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITRDVIVAT 162
Query: 998 DQTPMETVVDMYKKRSIS---VTNGQK------EIFLMRFLWDRWETLGNKLG------- 1041
++ V + V + + ++ L W + G
Sbjct: 163 PGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITN 222
Query: 1042 --IPDCM-KDVHKAHR-------VNTLAKNKIKPIVV 1068
+ + M +DV A + N I + V
Sbjct: 223 VRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPV 259
Score = 34.0 bits (78), Expect = 0.27
Identities = 8/68 (11%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 813 ASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLR 872
+ ++M + + ++ + ++ + PVV E+ + G +
Sbjct: 220 ITNVRMEEIM----KRDVITAKEG-DKLKKIAEIMVTNDIGALPVV--DENLRIKGIITE 272
Query: 873 RDLNLAIA 880
+D+ A
Sbjct: 273 KDVLKYFA 280
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
fold, structural genomics, joint center for structural
genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
d.37.1.1
Length = 157
Score = 40.0 bits (94), Expect = 0.001
Identities = 14/120 (11%), Positives = 30/120 (25%), Gaps = 21/120 (17%)
Query: 818 ASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNL 877
++ P V ++ ++++ + E V LVG + L
Sbjct: 18 VCKLIS---LKPTVV--EEDTPIEEIVDRILEDPVTRTVYVA--RDNKLVGMIPVMHLLK 70
Query: 878 AIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDM-APITITDQTPMETV 936
+ + +I M P+ + TP+E
Sbjct: 71 VSGFHFFGFIPKEELIRSSMKRLIAKN-----------ASEI--MLDPVYVHMDTPLEEA 117
Score = 39.2 bits (92), Expect = 0.002
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 788 LGKQGIYDAHIMLNAYPFLDSKEEFASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLL 847
L K + + + S + AS++M DP+ V D +++ L+
Sbjct: 68 LLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIM----LDPVYV-HMD-TPLEEALKLM 121
Query: 848 KETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKR 884
+ PVV E +VG + ++ LA+ +
Sbjct: 122 IDNNIQEMPVV--DEKGEIVGDLNSLEILLALWKGRE 156
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function,
center for structural genomics of infectious diseases;
1.80A {Bacillus anthracis}
Length = 150
Score = 39.7 bits (93), Expect = 0.001
Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 27/128 (21%)
Query: 809 KEEFASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVG 868
K+EF D+M S+ ++ + ++ +L ++ ++ PV+ L G
Sbjct: 9 KDEFQQI-FVKDLMIS--SEKVAHVQIG-NGLEHALLVLVKSGYSAIPVLD--PMYKLHG 62
Query: 869 FVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITIT 928
+ + I +R + V +++ +
Sbjct: 63 LISTAMILDGILGLERIEFERLEEMKVE---------------------QVMKQDIPVLK 101
Query: 929 DQTPMETV 936
+
Sbjct: 102 LEDSFAKA 109
Score = 34.7 bits (80), Expect = 0.074
Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 9/95 (9%)
Query: 793 IYDAHIMLNAYPFLDSKEEFASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEH 852
I A I+ + E VM+ D + + + + + H
Sbjct: 64 ISTAMILDGILGLERIEFERLEEMKVEQVMKQ---DIPVL--KLEDSFAKALEMTID--H 116
Query: 853 NGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLE 887
V E Y G + RR + + R
Sbjct: 117 PFICAVN--EDGYFEGILTRRAILKLLNKKVRQHN 149
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 40.0 bits (94), Expect = 0.001
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 817 LASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDL 875
D+M P ++ + T+ D + L++ + P+V ++ L+G V +RDL
Sbjct: 6 KVEDMMT---RHPHTL--LRTHTLNDAKHLMEALDIRHVPIV--DANKKLLGIVSQRDL 57
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national
project on protein structural functional analyses; 2.50A
{Geobacillus kaustophilus}
Length = 157
Score = 39.3 bits (92), Expect = 0.002
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Query: 819 SDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLA 878
+ P V Q + +L +T ++ PV+ S L G + + A
Sbjct: 14 KPFLIPA-DKVAHV--QPGNYLDHALLVLTKTGYSAIPVL--DTSYKLHGLISMTMMMDA 68
Query: 879 IANAKRTLEGLRGDSIVR 896
I +R V
Sbjct: 69 ILGLERIEFERLETMKVE 86
Score = 32.8 bits (75), Expect = 0.31
Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 9/95 (9%)
Query: 793 IYDAHIMLNAYPFLDSKEEFASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEH 852
I +M + E T +VM + + + ++ L+ H
Sbjct: 60 ISMTMMMDAILGLERIEFERLETMKVEEVMN---RNIPRL--RLDDSLMKAVGLI--VNH 112
Query: 853 NGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLE 887
V + Y G RR++ +
Sbjct: 113 PFVCVE--NDDGYFAGIFTRREVLKQLNKQLHRPN 145
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Length = 156
Score = 39.3 bits (92), Expect = 0.002
Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 27/118 (22%)
Query: 819 SDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLA 878
+ P + + D+ LL + + PVV + + VG + RD+
Sbjct: 18 ETFLTPA-KNLAVL--IDTHNADHATLLLSQMTYTRVPVVT--DEKQFVGTIGLRDIMAY 72
Query: 879 IANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETV 936
+ E + IV + D ++ + V
Sbjct: 73 QMEHDLSQEIMADTDIVHMTKTD----------------------VAVVSPDFTITEV 108
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 37.5 bits (88), Expect = 0.005
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 814 STALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRR 873
+ A D+M + V + T+ ++E + P+ + L G + R
Sbjct: 6 TMTTARDIMN---AGVTCV--GEHETLTAAAQYMREHDIGALPIC--GDDDRLHGMLTDR 58
Query: 874 DLNLAIANAKRTLEGLR 890
D+ + A
Sbjct: 59 DIVIKGLAAGLDPNTAT 75
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 38.5 bits (90), Expect = 0.006
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 7/73 (9%)
Query: 818 ASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNL 877
+M + +V + TV D ++ E G V ++ VG + R +
Sbjct: 11 VEKIMNS---NFKTV--NWNTTVFDAVKIMNENHLYGLVVK--DDNGNDVGLLSERSIIK 63
Query: 878 AIANAKRTLEGLR 890
+ + +
Sbjct: 64 RFIPRNKKPDEVP 76
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS)
domain, structural genomics, protein structure
initiative, PSI; 2.10A {Bacillus subtilis} SCOP:
d.37.1.1
Length = 159
Score = 37.4 bits (87), Expect = 0.011
Identities = 14/119 (11%), Positives = 29/119 (24%), Gaps = 26/119 (21%)
Query: 818 ASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNL 877
M V Q ++ +L +T + PV+ S L G + +
Sbjct: 16 VGQFMIEA-DKVAHV--QVGNNLEHALLVLTKTGYTAIPVL--DPSYRLHGLIGTNMIMN 70
Query: 878 AIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPMETV 936
+I +R V +++ + P+
Sbjct: 71 SIFGLERIEFEKLDQITVE---------------------EVMLTDIPRLHINDPIMKG 108
Score = 37.0 bits (86), Expect = 0.013
Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 9/95 (9%)
Query: 793 IYDAHIMLNAYPFLDSKEEFASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEH 852
I IM + + + E +VM D + + + ++ +
Sbjct: 63 IGTNMIMNSIFGLERIEFEKLDQITVEEVMLT---DIPRL--HINDPIMKGFGMVIN--N 115
Query: 853 NGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLE 887
V + Q G RR + + R+L
Sbjct: 116 GFVCVE--NDEQVFEGIFTRRVVLKELNKHIRSLN 148
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid, TIM
barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus
anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 38.6 bits (91), Expect = 0.013
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 22/78 (28%)
Query: 827 SDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTL 886
SDP + V D E L+ + +G PVV + + + LVG + RD+
Sbjct: 121 SDPFFL--TPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDM----------- 167
Query: 887 EGLRGDSIVRFVQNDTQP 904
RF+Q+ +
Sbjct: 168 ---------RFIQDYSIK 176
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 36.4 bits (85), Expect = 0.014
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 814 STALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRR 873
+ + M+ + +SV + D+ ++ E VV + VG + R
Sbjct: 2 EEEIVKEYMK---TQVISV--TKDAKLNDIAKVMTEKNIGSVIVV---DGNKPVGIITER 53
Query: 874 DLNLAIANAK 883
D+ AI K
Sbjct: 54 DIVKAIGKGK 63
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima}
SCOP: d.37.1.1
Length = 213
Score = 37.0 bits (86), Expect = 0.022
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 817 LASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDL 875
+ D V ++S TV++ +++ + N V + G V + DL
Sbjct: 14 KVKKWVTQ---DFPMV--EESATVRECLHRMRQYQTNECIVK--DREGHFRGVVNKEDL 65
>3ddj_A CBS domain-containing protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP:
d.37.1.1 d.37.1.1
Length = 296
Score = 37.1 bits (86), Expect = 0.032
Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 7/95 (7%)
Query: 793 IYDAHIMLNAYPFLDSKEEFASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEH 852
+ ST D M P +P++V ++ ++
Sbjct: 70 LLSTVESYCKDSCSQGDLYHISTTPIIDYMTP---NPVTV--YNTSDEFTAINIMVTRNF 124
Query: 853 NGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTLE 887
PVV + VG V R+ L +
Sbjct: 125 GSLPVV--DINDKPVGIVTEREFLLLYKDLDEIFP 157
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
SCOP: c.1.5.1 d.37.1.1
Length = 491
Score = 37.1 bits (87), Expect = 0.043
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 22/78 (28%)
Query: 827 SDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTL 886
DP LT + V + E L++ +G P+V + ++ LVG + RD+
Sbjct: 98 IDPFF-LTPE-HKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDM----------- 144
Query: 887 EGLRGDSIVRFVQNDTQP 904
RF+ + P
Sbjct: 145 ---------RFISDYNAP 153
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 36.8 bits (86), Expect = 0.055
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 827 SDPLSVLTQDSMTVQDVETLLKETEHNGFPVV-VSRESQYLVGFVLRRDL 875
+ + D T DV + + T HN V L+G V +RD
Sbjct: 105 VSDSN-VKPD-QTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDY 152
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix,
structural genomics, unknown function, NPPSFA; 2.25A
{Pyrococcus horikoshii} SCOP: d.37.1.1
Length = 138
Score = 33.7 bits (78), Expect = 0.12
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 819 SDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLA 878
M L V + S +VQ+ L+ E + V+ + +VGF + D+
Sbjct: 10 KVYMT---KKLLGV--KPSTSVQEASRLMMEFDVGSLVVI--NDDGNVVGFFTKSDIIRR 62
Query: 879 IANAKRTLE 887
+ +
Sbjct: 63 VIVPGLPYD 71
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 34.4 bits (79), Expect = 0.22
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 818 ASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNL 877
+M +P+++ T L K+ + FPVV + LVG + + + +
Sbjct: 3 VKTIMTQ---NPVTI--TLPATRNYALELFKKYKVRSFPVV--NKEGKLVGIISVKRILV 55
Query: 878 AIANAK 883
+
Sbjct: 56 NPDEEQ 61
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 34.6 bits (80), Expect = 0.23
Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 8/128 (6%)
Query: 800 LNAYPFLDSKEEFASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVV 859
+ A F + E + + + + P V+ + TV + L+K+ + PVV
Sbjct: 365 MEARNFKEPVNEHGHWWWSLAIAELELPAPP-VILKSDATVGEAIALMKKHRVDQLPVV- 422
Query: 860 SRESQYLVGFVLRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKI 919
++ ++G V + L I + R N + L + + +L ++
Sbjct: 423 DQDDGSVLGVVGQETLITQIVSMNRQQ-----SDPAIKALNKRVIR-LNESEILGKLARV 476
Query: 920 LDMAPITI 927
L++ P +
Sbjct: 477 LEVDPSVL 484
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding;
1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB:
2nye_A
Length = 144
Score = 32.5 bits (75), Expect = 0.31
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 819 SDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDL-NL 877
D+ + S Q + V DV +L + + P++ E+ YL+ D+ L
Sbjct: 11 GDLNIITQDNMKSC--QMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGL 66
Query: 878 AIANAKRTLEGLRGDSIVR 896
L G++++R
Sbjct: 67 IKGGIYNDLSLSVGEALMR 85
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound
nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP
NAI; 2.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 32.7 bits (75), Expect = 0.44
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 815 TALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHN-GFPVVVSRESQYLVGFVLRR 873
D++ K D ++V +++ + L H G VVV+ ++G R
Sbjct: 23 ATFVKDLLDRKGRDVVTV--GPDVSIGEAAGTL--HAHKIGA-VVVTDADGVVLGIFTER 77
Query: 874 DLNLAIANAKRTLEGLR 890
DL A+A
Sbjct: 78 DLVKAVAGQGAASLQQS 94
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 33.2 bits (77), Expect = 0.59
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 24/78 (30%)
Query: 827 SDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTL 886
+ P++V + T+ DV L GFPVV E+ LVG + RD+
Sbjct: 97 THPVTV--RPEQTIADVMELTHYHGFAGFPVVT--ENNELVGIITGRDV----------- 141
Query: 887 EGLRGDSIVRFVQNDTQP 904
RFV + T+
Sbjct: 142 ---------RFVTDLTKS 150
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.18A {Thermotoga maritima} SCOP:
c.1.5.1
Length = 494
Score = 33.2 bits (77), Expect = 0.65
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 24/78 (30%)
Query: 827 SDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAIANAKRTL 886
DP++V MTV++ L+ E + G PVV E LVG + RD+
Sbjct: 103 YDPITV--TPDMTVKEAIDLMAEYKIGGLPVV--DEEGRLVGLLTNRDV----------- 147
Query: 887 EGLRGDSIVRFVQNDTQP 904
RF +N ++
Sbjct: 148 ---------RFEKNLSKK 156
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E*
2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Length = 330
Score = 32.6 bits (74), Expect = 0.83
Identities = 21/212 (9%), Positives = 56/212 (26%), Gaps = 23/212 (10%)
Query: 811 EFASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFV 870
F + D++ P S + T S+ V+ L P+ S++ + VG +
Sbjct: 30 TFMKSHRCYDLI-PTSSKLVVFDT--SLQVKKAFFALVTNGVRAAPLWDSKKQSF-VGML 85
Query: 871 LRRDLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQ 930
D + ++ + ++ + P + I+
Sbjct: 86 TITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKP-----------LVCISPN 134
Query: 931 TPMETVCGHTFTKQ----LLFPANAKRTLEGL--RGDSIVRFVQNDTQPQPLP-GAPPIL 983
+ + + L + + T+ + +
Sbjct: 135 ASLFDAV-SSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLE 193
Query: 984 RLDKILDMAPITITDQTPMETVVDMYKKRSIS 1015
L + TP+ + ++ + +S
Sbjct: 194 ELQIGTYANIAMVRTTTPVYVALGIFVQHRVS 225
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 32.5 bits (75), Expect = 0.94
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 827 SDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDL 875
D +++ TV L+++ +G PVV E + +VG + ++D+
Sbjct: 101 EDVITI--APDETVDFALFLMEKHGIDGLPVV---EDEKVVGIITKKDI 144
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 32.1 bits (74), Expect = 1.3
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 827 SDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVS-RESQYLVGFVLRRDL 875
+DP+ VL+ TV DV +G P+ + LVG V RD+
Sbjct: 116 TDPV-VLSPS-HTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDI 163
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding
protein, ligand-BIND protein; 2.10A {Pyrobaculum
aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Length = 141
Score = 29.9 bits (68), Expect = 2.4
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 813 ASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLR 872
A S+++ P+S+ T+++V T L + + + V V
Sbjct: 2 AMAIRTSELL---KRPPVSLPETA--TIREVATELAKNRVGLAVLTARDNPKRPVAVVSE 56
Query: 873 RDLNLAIA 880
RD+ A+A
Sbjct: 57 RDILRAVA 64
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix
domain, phosphoribosyltranseferases, domain
recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE;
2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB:
1p4a_A*
Length = 291
Score = 30.7 bits (70), Expect = 2.7
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 727 TGGVRYIVPLMAAAMASKWHKKLKTLFRLSLVVIMFELTGGVRYIVPLMAAAMASKWVGD 786
GGV+YI P M A A ++ + L + L GG Y+ ++ VG
Sbjct: 66 AGGVKYI-PKMKQAEAEEFVQTLGQSLANPERI----LPGGYVYLTDILGKPSVLSKVGK 120
Query: 787 AL 788
Sbjct: 121 LF 122
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta-
transcription regulator, metal binding protein; HET: GOL;
2.00A {Thermococcus thioreducens}
Length = 77
Score = 27.6 bits (62), Expect = 5.9
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 1122 VWVRDCKIMIRKNESSRIYV 1141
+ V + I K + R+ V
Sbjct: 55 ISVGGVRFAIGKGLAGRVMV 74
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 5.9
Identities = 13/99 (13%), Positives = 28/99 (28%), Gaps = 25/99 (25%)
Query: 117 FIAWALLFASLA---AGLVRMFAPYAC----------GSGIPEIKTILSGFIIRGYLGKW 163
+ L+ A +G+ + Y GSG+ + + F R
Sbjct: 1012 ITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEP- 1070
Query: 164 TLIIKS---VGIMLAVSAG----LSLGKEGPMVHIAS-C 194
+++ + + L + GP+ C
Sbjct: 1071 ---VQNDILQESFINTMSAWVNMLLISSSGPIKTPVGAC 1106
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol
protease, structural genomics; HET: MSE PG4; 1.25A
{Staphylococcus aureus subsp}
Length = 215
Score = 29.0 bits (64), Expect = 9.3
Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 8/121 (6%)
Query: 823 QPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRES-QYLVGFVLRRDLNLAIAN 881
QP + V+ + + + G P +S + ++ L L +
Sbjct: 99 QPIDQAIHLDGAPAYFSNLPVKAMTQSIINQGLPGALSNSAGTFVCNHTLYHLGYLQDKH 158
Query: 882 AKRTLEGLRGDSIVRFVQNDTQPQPLPGAP--PILRLDKILDMAPITITDQTPMETVCGH 939
G + Q P P P+ ++ L A I++ + G
Sbjct: 159 YPHLRFGF-----IHVPYIPEQVIGKPDTPSMPLEKIVAGLTAAIEAISNDEDLHLALGT 213
Query: 940 T 940
T
Sbjct: 214 T 214
>1oao_C CODH, carbon monoxide dehydrogenase/acetyl-COA synthase alpha;
oxidoreductase-transferase complex, electron transfer,
oxidoreductase; 1.90A {Moorella thermoacetica} SCOP:
e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A
3s2x_A
Length = 729
Score = 29.5 bits (66), Expect = 9.8
Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 17/132 (12%)
Query: 398 LTWAEVMGSNKEGFMAYTLEYV--FFIAWALL---FASLAAGLVRMFAPYACGSGIPEAL 452
+ + V +E Y + F + + A G + P +PE
Sbjct: 227 MMFGGVTPGAREEQRDYQRRRIRAFVLYLGEHDMVKTAAAFGAIFTGFPVITDQPLPEDK 286
Query: 453 THPHSLHSDP-LSVLTQDSMTVQDVETNYRERERGGQKYPWALFPAGYSGPKFRCLGLDR 511
P S + Q +M + ++ + + P PA + G R +
Sbjct: 287 QIPDWFFSVEDYDKIVQIAMETRGIKLTKIKLD-----LPINFGPA-FEGESIR-----K 335
Query: 512 EKAEKEMGNGRT 523
EMG RT
Sbjct: 336 GDMYVEMGGNRT 347
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.423
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 21,151,617
Number of extensions: 1318403
Number of successful extensions: 2654
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2600
Number of HSP's successfully gapped: 92
Length of query: 1359
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1254
Effective length of database: 3,770,088
Effective search space: 4727690352
Effective search space used: 4727690352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (27.8 bits)