RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9748
(1359 letters)
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
[TaxId: 562]}
Length = 444
Score = 112 bits (280), Expect = 1e-26
Identities = 75/296 (25%), Positives = 110/296 (37%), Gaps = 9/296 (3%)
Query: 90 LLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEIKT 149
+ WL MG+ Y L + + A LVR +AP A GSGIPEI+
Sbjct: 40 GVAWLQNQ-RMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEG 98
Query: 150 ILSGFIIRGYLGKWTLIIKSVGIMLAVSAGLSLGKEGPMVHIASCIGNILSYLFPKYGRN 209
L R L +K G + + G+ LG+EGP V I IG ++ +F +
Sbjct: 99 ALED--QRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRL--KG 154
Query: 210 EAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVS-FFLFFRIFHLEMEGRRRRGRPRLR 268
+ + +L+ AAAG++ AF AP+ G+LF +EE+ F + I + R
Sbjct: 155 DEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYR 214
Query: 269 WVDMIHNDIEKEVSYYFPLKTLWRSFPFSIY---IRSIPTKWMCDKFELAGSVAGIIDIG 325
+ I+ PL TLW I I KW+ +L V G
Sbjct: 215 IFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITK 274
Query: 326 SSWMSDLKYGLCPEAFWLNKEQCCWSSNETSFEDTGNCSQPKPLQQHQQHFHYDIL 381
M GLC ++ N GN S + +L
Sbjct: 275 WVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLL 330
Score = 68.7 bits (167), Expect = 2e-12
Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 16/133 (12%)
Query: 668 WLLMITLVLKLVLTVFTFGIKVPCGRLYLALFEQNKQGTYLSFYFIYFSVSLVVIMFELT 727
+L+ V +++ T+ F P G L GT L F +V L
Sbjct: 315 GMLVFIFVARVITTLLCFSSGAPGGIFAPMLA----LGTVLGTAFGMVAVELFPQYHLEA 370
Query: 728 GGVRYIVPLMAAAMASKWHKKLKTLFR--LSLVVIMFELTGGVRYIVPLMAAAMASKWVG 785
G + + M A +A+ R L+ ++++ E+T + I+P++ + + +
Sbjct: 371 GT--FAIAGMGALLAA--------SIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA 420
Query: 786 DALGKQGIYDAHI 798
G + +Y A +
Sbjct: 421 QFTGGKPLYSAIL 433
Score = 59.8 bits (144), Expect = 1e-09
Identities = 7/44 (15%), Positives = 24/44 (54%)
Query: 1286 VSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGKQGIYDAHI 1329
++ ++++ E+T + I+P++ + + + G + +Y A +
Sbjct: 390 LTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAIL 433
Score = 39.4 bits (91), Expect = 0.003
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 394 LLQWLTWAEVMGSNKEGFMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEALT 453
+ WL MG+ Y L + + A LVR +AP A GSGIPE
Sbjct: 40 GVAWLQNQ-RMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEG 98
Score = 37.5 bits (86), Expect = 0.010
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 2/136 (1%)
Query: 107 FMAYTLEYVFFIAWALLFASLAAGLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLI 166
+ GL+ AP G G I +G G L + +
Sbjct: 264 LHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLV-FIFV 322
Query: 167 IKSVGIMLAVSAGLSLGKEGPMVHIASCIGNILSYLFPKYGRNEAKKREILSAAAAAGV- 225
+ + +L S+G G PM+ + + +G + + + + A +
Sbjct: 323 ARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALL 382
Query: 226 SVAFGAPIGGVLFSLE 241
+ + AP+ G++ LE
Sbjct: 383 AASIRAPLTGIILVLE 398
>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 76.1 bits (186), Expect = 2e-16
Identities = 70/123 (56%), Positives = 91/123 (73%), Gaps = 3/123 (2%)
Query: 815 TALASDVMQPKHSDP-LSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRR 873
LA DVM+P+ +DP L+VLTQDSMTV+DVET++ ET ++GFPVVVSRESQ LVGFVLRR
Sbjct: 2 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRR 61
Query: 874 DLNLAIANAKRTLEGLRGDSIVRFVQNDTQPQPLPGAPPILRLDKILDMAPITITDQTPM 933
DL ++I NA++ +G+ SI+ F + P P PP L+L ILD++P T+TD TPM
Sbjct: 62 DLIISIENARKKQDGVVSTSIIYF--TEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPM 119
Query: 934 ETV 936
E V
Sbjct: 120 EIV 122
Score = 29.1 bits (64), Expect = 2.7
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 820 DVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGFVLRRDLNLAI 879
+ P +V D ++ V + ++ V + L+G + ++D+ I
Sbjct: 101 KLRNILDLSPFTV--TDLTPMEIVVDIFRKLGLRQCLVT---HNGRLLGIITKKDVLKHI 155
Query: 880 ANAKR 884
A
Sbjct: 156 AQMAN 160
>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate
dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId:
53953]}
Length = 368
Score = 29.0 bits (64), Expect = 4.3
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
Query: 1284 RDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGD-----ALGKQGI 1324
+DV + +T V+ +P+++AAM V + A+ ++G
Sbjct: 30 KDVDV---STRITPNVKLNIPILSAAM--DTVTEWEMAVAMAREGG 70
Score = 29.0 bits (64), Expect = 4.6
Identities = 17/114 (14%), Positives = 43/114 (37%), Gaps = 12/114 (10%)
Query: 758 VVIMFELTGGVRYIVPLMAAAMASKWVGD-----ALGKQG-IYDAHIMLNAYPFLDSKEE 811
V + +T V+ +P+++AAM V + A+ ++G + H + ++ +
Sbjct: 32 VDVSTRITPNVKLNIPILSAAM--DTVTEWEMAVAMAREGGLGVIHRNMGIEEQVEQVKR 89
Query: 812 FASTALASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQY 865
+ ++ ++ + L ++ L K G V+V +
Sbjct: 90 VKRAEKYKNAVRDENGELLVAAAVSPFDIKRAIELDK----AGVDVIVVDTAHA 139
>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 123
Score = 27.5 bits (60), Expect = 6.0
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 818 ASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVV 858
A D+M ++ V + T+ ++E + P+
Sbjct: 3 ARDIM---NAGVTCV--GEHETLTAAAQYMREHDIGALPIC 38
>d1gxya_ d.166.1.3 (A:) Eukaryotic mono-ADP-ribosyltransferase ART2.2
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 223
Score = 27.9 bits (62), Expect = 6.6
Identities = 22/148 (14%), Positives = 41/148 (27%), Gaps = 45/148 (30%)
Query: 988 ILDMAPITITDQTP-----METVVDMYKKRSISVTNGQKEIF---LMRFLWD----RWET 1035
+LD AP DQ ME + Q++ ++ W+ RW
Sbjct: 3 MLDTAPNAFDDQYEGCVNKMEEKAPLLL---------QEDFNMNAKLKVAWEEAKKRWNN 53
Query: 1036 LGNKLGIPDCMKDVHKAHRVNTLAKNKIKPIVVRLSNTSVRDKWTTASRSKQLYKEKI-- 1093
+ P D H + S+ + A R + +
Sbjct: 54 IKPSRSYPKGFNDFHG--------------TALVAYTGSIAVDFNRAVREFKENPGQFHY 99
Query: 1094 -YINEHLTKANQDLLFKAKKLKEANGYK 1120
+ +LT+A + L + +
Sbjct: 100 KAFHYYLTRA-------LQLLSNGDCHS 120
>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH)
{Lyme disease spirochete (Borrelia burgdorferi) [TaxId:
139]}
Length = 388
Score = 28.2 bits (62), Expect = 7.4
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 10/45 (22%)
Query: 1284 RDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGD-----ALGKQG 1323
+VSL +LT + +P +++AM + V + A+ K+G
Sbjct: 25 SEVSLKT---QLTKNISLNIPFLSSAMDT--VTESQMAIAIAKEG 64
>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072
{Pyrobaculum aerophilum [TaxId: 13773]}
Length = 131
Score = 27.2 bits (59), Expect = 8.0
Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 818 ASDVMQPKHSDPLSVLTQDSMTVQDVETLLKETEHNGFPVVVSRESQYLVGF 869
S+++ P+S+ ++ T+++V T L + + + V
Sbjct: 3 TSELL---KRPPVSL--PETATIREVATELAKNRVGLAVLTARDNPKRPVAV 49
>d1wwia1 a.22.1.4 (A:1-148) Hypothetical protein TTHA1479 {Thermus
thermophilus [TaxId: 274]}
Length = 148
Score = 27.0 bits (60), Expect = 8.5
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 1088 LYKEKIY-INEHLTKANQDLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYVIRNVR 1146
+ K + +++ L DLL A++ + NG ++ D I E+ ++ R
Sbjct: 20 VDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPIAKGLQET-----LQEFR 74
Query: 1147 DLETYMTLVP 1156
++T + L P
Sbjct: 75 RMDTALELKP 84
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate
dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId:
1314]}
Length = 365
Score = 28.1 bits (62), Expect = 9.2
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 1283 TRDVSLVVIMFELTGGVRYIVPLMAAAMASKWVGD-----ALGKQG 1323
+ V + +L + +P++ AAM V A+ + G
Sbjct: 25 HVLPNEVDLKTKLADNLTLNIPIITAAM--DTVTGSKMAIAIARAG 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.423
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,147,193
Number of extensions: 248635
Number of successful extensions: 528
Number of sequences better than 10.0: 1
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 20
Length of query: 1359
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1263
Effective length of database: 1,089,516
Effective search space: 1376058708
Effective search space used: 1376058708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.0 bits)