BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9749
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WSS|S Chain S, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|W Chain W, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
Length = 190
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%)
Query: 13 VLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIMAAHRG 72
+L+P +++S+K+++L K+ F ENG++ N VI+ FS + HRG
Sbjct: 55 LLNPYVKRSVKVKSLSDXTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTXXSVHRG 114
Query: 73 DLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMS 132
++P V TA L+E +EL++ LK F KG+ + L K+DPSI GG IV +G+KYVD S
Sbjct: 115 EVPCTVTTASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIXGGXIVRIGEKYVDXS 174
Query: 133 VASKIKKYT 141
+KI+K +
Sbjct: 175 AKTKIQKLS 183
>pdb|2BO5|A Chain A, Bovine Oligomycin Sensitivity Conferral Protein N-Terminal
Domain
pdb|2JMX|A Chain A, Oscp-Nt (1-120) In Complex With N-Terminal (1-25) Alpha
Subunit From F1-Atpase
pdb|4B2Q|W Chain W, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|WW Chain w, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 120
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 13 VLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIMAAHRG 72
+L+P +++S+K+++L + K+ F ENG++ N VI+ FS +M+ HRG
Sbjct: 55 LLNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRG 114
Query: 73 DLPVEV 78
++P V
Sbjct: 115 EVPCTV 120
>pdb|2F1F|A Chain A, Crystal Structure Of The Regulatory Subunit Of
Acetohydroxyacid Synthase Isozyme Iii From E. Coli
pdb|2F1F|B Chain B, Crystal Structure Of The Regulatory Subunit Of
Acetohydroxyacid Synthase Isozyme Iii From E. Coli
Length = 164
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 84 LEEADKSELQSTLKLFAKKGENILLTTKV---DPSIIGGMIVSVGDKYVDMSVASKIKKY 140
L E + L + LF+++G NI T DP++ I +VGD+ V + ++ K
Sbjct: 9 LLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKL 68
Query: 141 TDLLQ 145
D+L+
Sbjct: 69 VDVLR 73
>pdb|3TJL|A Chain A, Crystal Structure Of A Novel Oye From The
Xylose-Fermenting Fungus P. Stipitis
pdb|3UPW|A Chain A, Pichia Stipitis Oye2.6 Complexed With Nicotinamide
Length = 407
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 90 SELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKK 139
S L L+ A KG+ I + V+P + G + VS D+ D SKI K
Sbjct: 264 SYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIWK 313
>pdb|4DF2|A Chain A, P. Stipitis Oye2.6 Complexed With P-Chlorophenol
Length = 407
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 90 SELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKK 139
S L L+ A KG+ I + V+P + G + VS D+ D SKI K
Sbjct: 264 SYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIWK 313
>pdb|4DVZ|A Chain A, Crystal Structure Of The Helicobacter Pylori Caga
Oncoprotein
Length = 569
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 64 SIIMAAHRGDLP--VEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMI 121
S++M +H G P V ++ A DK + +T+ ++G N+ V G++
Sbjct: 46 SVLMGSHNGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATLINVHMKNGSGLV 105
Query: 122 VSVGDKYVD 130
++ G+K ++
Sbjct: 106 IAGGEKGIN 114
>pdb|4G0H|A Chain A, Crystal Structure Of The N-Terminal Domain Of Helicobacter
Pylori Caga Protein
Length = 916
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 64 SIIMAAHRGDLP--VEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMI 121
S++M +H G P V ++ A DK + +T+ ++G N+ V G++
Sbjct: 306 SVLMGSHNGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATLINVHMKNGSGLV 365
Query: 122 VSVGDKYVD 130
++ G+K ++
Sbjct: 366 IAGGEKGIN 374
>pdb|4DVY|P Chain P, Crystal Structure Of The Helicobacter Pylori Caga
Oncoprotein
Length = 876
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 64 SIIMAAHRGDLP--VEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMI 121
S++M +H G P V ++ A DK + +T+ ++G N+ V G++
Sbjct: 306 SVLMGSHNGIEPEKVSLLYAGNGGFGDKHDWNATVGYKDQQGNNVATLINVHMKNGSGLV 365
Query: 122 VSVGDKYVD 130
++ G+K ++
Sbjct: 366 IAGGEKGIN 374
>pdb|1DOZ|A Chain A, Crystal Structure Of Ferrochelatase
pdb|2Q2N|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With Deuteroporphyrin Ix 2,4-Disulfonic Acid
Dihydrochloride
pdb|3M4Z|A Chain A, Crystal Structure Of B. Subtilis Ferrochelatase With
Cobalt Bound At The Active Site
Length = 309
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 57 DGVINNFSIIMAAHRGDLPVEVITARPLEEADK 89
DG+ SI++A H V+ R EEA+K
Sbjct: 102 DGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEK 134
>pdb|2AC4|A Chain A, Crystal Structure Of The His183cys Mutant Variant Of
Bacillus Subtilis Ferrochelatase
pdb|2Q2O|A Chain A, Crystal Structure Of H183c Bacillus Subtilis
Ferrochelatase In Complex With Deuteroporphyrin Ix
2,4-Disulfonic Acid Dihydrochloride
Length = 309
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 57 DGVINNFSIIMAAHRGDLPVEVITARPLEEADK 89
DG+ SI++A H V+ R EEA+K
Sbjct: 102 DGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEK 134
>pdb|2Q3J|A Chain A, Crystal Structure Of The His183ala Variant Of Bacillus
Subtilis Ferrochelatase In Complex With N-Methyl
Mesoporphyrin
Length = 309
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 57 DGVINNFSIIMAAHRGDLPVEVITARPLEEADK 89
DG+ SI++A H V+ R EEA+K
Sbjct: 102 DGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEK 134
>pdb|2H1W|A Chain A, Crystal Structure Of The His183ala Mutant Variant Of
Bacillus Subtilis Ferrochelatase
Length = 310
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 57 DGVINNFSIIMAAHRGDLPVEVITARPLEEADK 89
DG+ SI++A H V+ R EEA+K
Sbjct: 103 DGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEK 135
>pdb|1C1H|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With N-Methyl Mesoporphyrin
pdb|1LD3|A Chain A, Crystal Structure Of B. Subilis Ferrochelatase With Zn(2+)
Bound At The Active Site.
pdb|1N0I|A Chain A, Crystal Structure Of Ferrochelatase With Cadmium Bound At
Active Site
pdb|2HK6|A Chain A, Crystal Structure Of B. Subtilis Ferrochelatase With Iron
Bound At The Active Site
pdb|1AK1|A Chain A, Ferrochelatase From Bacillus Subtilis
Length = 310
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 57 DGVINNFSIIMAAHRGDLPVEVITARPLEEADK 89
DG+ SI++A H V+ R EEA+K
Sbjct: 103 DGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEK 135
>pdb|2AC2|A Chain A, Crystal Structure Of The Tyr13phe Mutant Variant Of
Bacillus Subtilis Ferrochelatase With Zn(2+) Bound At
The Active Site
Length = 309
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 57 DGVINNFSIIMAAHRGDLPVEVITARPLEEADK 89
DG+ SI++A H V+ R EEA+K
Sbjct: 102 DGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEK 134
>pdb|3GOQ|A Chain A, Crystal Structure Of The Tyr13met Variant Of Bacillus
Subtilis Ferrochelatase
Length = 310
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 57 DGVINNFSIIMAAHRGDLPVEVITARPLEEADK 89
DG+ SI++A H V+ R EEA+K
Sbjct: 103 DGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEK 135
>pdb|2H1V|A Chain A, Crystal Structure Of The Lys87ala Mutant Variant Of
Bacillus Subtilis Ferrochelatase
Length = 310
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 57 DGVINNFSIIMAAHRGDLPVEVITARPLEEADK 89
DG+ SI++A H V+ R EEA+K
Sbjct: 103 DGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEK 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,642,046
Number of Sequences: 62578
Number of extensions: 118787
Number of successful extensions: 415
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 21
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)