Query psy9749
Match_columns 148
No_of_seqs 131 out of 1101
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 18:35:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13434 F0F1 ATP synthase sub 100.0 1.1E-39 2.3E-44 243.5 16.8 142 2-146 34-175 (184)
2 PRK13436 F0F1 ATP synthase sub 100.0 1.7E-39 3.8E-44 241.4 16.3 141 2-145 38-178 (179)
3 COG0712 AtpH F0F1-type ATP syn 100.0 3.7E-37 8E-42 228.4 16.1 142 1-145 37-178 (178)
4 PRK13430 F0F1 ATP synthase sub 100.0 5.1E-37 1.1E-41 241.1 17.5 142 2-146 130-271 (271)
5 KOG1662|consensus 100.0 1.2E-36 2.6E-41 224.0 15.8 147 1-147 63-209 (210)
6 TIGR01145 ATP_synt_delta ATP s 100.0 8.8E-35 1.9E-39 214.8 16.3 141 1-144 31-172 (172)
7 PRK13428 F0F1 ATP synthase sub 100.0 7.6E-35 1.6E-39 242.2 17.2 140 2-144 302-443 (445)
8 CHL00119 atpD ATP synthase CF1 100.0 1.2E-34 2.6E-39 216.3 16.1 144 2-147 39-182 (184)
9 PRK13441 F0F1 ATP synthase sub 100.0 6.9E-34 1.5E-38 211.5 16.7 137 8-146 40-178 (180)
10 PRK13429 F0F1 ATP synthase sub 100.0 8.7E-34 1.9E-38 210.9 17.2 143 2-146 37-179 (181)
11 PRK08474 F0F1 ATP synthase sub 100.0 6.9E-34 1.5E-38 210.9 15.5 136 2-146 35-170 (176)
12 PRK05758 F0F1 ATP synthase sub 100.0 3.1E-33 6.8E-38 207.2 17.0 140 2-145 37-176 (177)
13 PF00213 OSCP: ATP synthase de 100.0 4.8E-37 1E-41 226.5 -12.5 140 2-144 32-172 (172)
14 PRK13431 F0F1 ATP synthase sub 99.9 7.9E-21 1.7E-25 140.9 13.0 123 2-134 39-164 (180)
15 TIGR03321 alt_F1F0_F0_B altern 99.8 1.1E-18 2.4E-23 135.5 13.2 98 42-144 148-245 (246)
16 PRK14474 F0F1 ATP synthase sub 99.4 3.5E-12 7.7E-17 99.4 11.1 74 71-146 173-247 (250)
17 PRK06669 fliH flagellar assemb 98.0 5E-06 1.1E-10 65.8 4.0 102 39-147 175-277 (281)
18 PRK03963 V-type ATP synthase s 97.4 0.018 4E-07 43.1 14.7 85 57-145 103-189 (198)
19 PRK02292 V-type ATP synthase s 97.0 0.011 2.3E-07 44.0 9.8 35 111-145 142-178 (188)
20 PRK13430 F0F1 ATP synthase sub 97.0 0.0029 6.3E-08 50.0 7.0 58 2-61 40-97 (271)
21 TIGR03825 FliH_bacil flagellar 97.0 0.0057 1.2E-07 47.8 8.5 82 56-146 161-246 (255)
22 PF02108 FliH: Flagellar assem 96.0 0.094 2E-06 36.0 8.7 64 70-140 64-128 (128)
23 PF01991 vATP-synt_E: ATP synt 95.6 0.017 3.7E-07 42.8 4.1 87 55-145 94-190 (198)
24 PRK13428 F0F1 ATP synthase sub 95.4 0.054 1.2E-06 45.8 6.8 59 2-62 212-270 (445)
25 PRK06328 type III secretion sy 95.3 0.14 3.1E-06 39.3 8.2 68 73-146 131-202 (223)
26 PRK06937 type III secretion sy 95.3 0.25 5.4E-06 37.3 9.3 74 69-146 126-201 (204)
27 PRK05687 fliH flagellar assemb 95.2 0.13 2.9E-06 39.8 7.8 60 84-146 182-242 (246)
28 PRK01558 V-type ATP synthase s 94.6 0.4 8.7E-06 36.1 8.9 64 74-145 119-188 (198)
29 PRK09098 type III secretion sy 94.3 0.5 1.1E-05 36.6 8.9 63 84-146 157-221 (233)
30 COG1390 NtpE Archaeal/vacuolar 93.9 1.3 2.8E-05 33.4 10.3 93 40-145 90-184 (194)
31 PRK01194 V-type ATP synthase s 93.1 1.1 2.5E-05 33.3 8.8 33 113-145 142-176 (185)
32 COG1317 FliH Flagellar biosynt 92.3 1.2 2.6E-05 34.5 8.2 61 84-146 164-226 (234)
33 PRK13386 fliH flagellar assemb 91.5 1.2 2.6E-05 34.5 7.5 57 84-145 169-226 (236)
34 PRK06032 fliH flagellar assemb 91.3 2.9 6.4E-05 31.4 9.2 76 67-146 121-198 (199)
35 PRK01005 V-type ATP synthase s 90.6 6.2 0.00013 30.0 12.0 56 84-145 139-197 (207)
36 PF07560 DUF1539: Domain of Un 70.2 6.3 0.00014 27.7 3.2 26 8-33 71-96 (126)
37 PRK07738 flagellar protein Fla 67.5 16 0.00034 25.4 4.7 41 82-124 41-81 (117)
38 PF14480 DNA_pol3_a_NI: DNA po 66.9 23 0.0005 21.9 5.2 43 69-111 33-75 (76)
39 TIGR02499 HrpE_YscL_not type I 66.1 44 0.00096 23.7 10.8 63 63-132 103-166 (166)
40 KOG1664|consensus 62.7 68 0.0015 24.6 10.0 87 56-144 110-205 (220)
41 PF03646 FlaG: FlaG protein; 59.6 22 0.00047 23.7 4.3 41 82-124 32-72 (107)
42 PF12327 FtsZ_C: FtsZ family, 57.2 53 0.0011 21.6 7.3 52 73-124 38-89 (95)
43 PF08863 YolD: YolD-like prote 56.9 48 0.001 21.0 6.5 43 81-128 20-62 (92)
44 PF12685 SpoIIIAH: SpoIIIAH-li 56.2 26 0.00056 26.2 4.6 84 7-101 104-187 (196)
45 PF13103 TonB_2: TonB C termin 54.0 38 0.00081 21.1 4.5 36 103-140 25-65 (85)
46 PRK15379 pathogenicity island 49.1 1.1E+02 0.0024 24.5 7.1 52 84-136 73-126 (317)
47 COG2026 RelE Cytotoxic transla 47.2 61 0.0013 21.0 4.7 45 84-129 18-63 (90)
48 PRK09853 putative selenate red 45.7 1.2E+02 0.0026 28.8 7.9 78 37-118 160-250 (1019)
49 TIGR01609 PF_unchar_267 Plasmo 45.5 36 0.00079 24.5 3.6 41 7-49 102-142 (146)
50 PF04918 DltD_M: DltD central 44.8 36 0.00078 24.7 3.7 59 6-65 52-110 (163)
51 PF12170 DNA_pol3_tau_5: DNA p 44.7 40 0.00088 24.0 3.9 28 84-113 66-93 (142)
52 PRK05904 coproporphyrinogen II 44.7 1.7E+02 0.0036 23.9 8.0 56 80-137 66-132 (353)
53 PRK08868 flagellar protein Fla 44.3 53 0.0011 23.7 4.3 41 82-124 66-106 (144)
54 COG0635 HemN Coproporphyrinoge 43.8 1.3E+02 0.0028 25.3 7.3 62 80-141 97-170 (416)
55 COG0023 SUI1 Translation initi 43.5 54 0.0012 22.3 4.1 31 71-101 37-67 (104)
56 PF15603 Imm45: Immunity prote 43.3 48 0.001 21.5 3.7 28 82-110 54-81 (82)
57 PF06635 NolV: Nodulation prot 40.8 1.6E+02 0.0036 22.5 7.0 71 70-145 127-199 (207)
58 PRK06824 translation initiatio 40.4 86 0.0019 21.8 4.8 30 71-100 52-81 (118)
59 TIGR02590 cas_Csh2 CRISPR-asso 40.3 1.4E+02 0.003 24.0 6.6 65 82-146 183-273 (286)
60 TIGR03315 Se_ygfK putative sel 39.3 1.6E+02 0.0035 27.9 7.7 78 37-118 158-248 (1012)
61 PRK09019 translation initiatio 37.3 1.2E+02 0.0025 20.8 5.0 30 72-101 43-72 (108)
62 PF09822 ABC_transp_aux: ABC-t 36.5 1.8E+02 0.0039 22.4 6.7 94 35-134 11-122 (271)
63 PF02216 B: B domain; InterPr 36.2 57 0.0012 19.4 2.9 26 7-32 11-36 (54)
64 PF09688 Wx5_PLAF3D7: Protein 35.3 65 0.0014 23.3 3.7 41 7-49 103-143 (147)
65 COG1334 FlaG Uncharacterized f 34.5 82 0.0018 22.0 4.0 37 86-124 48-84 (120)
66 PF12224 Amidoligase_2: Putati 34.3 1.3E+02 0.0028 22.8 5.5 60 74-142 76-136 (252)
67 PF13348 Y_phosphatase3C: Tyro 34.0 20 0.00044 21.7 0.8 40 57-96 28-67 (68)
68 PF14675 FANCI_S1: FANCI solen 33.6 1.7E+02 0.0037 22.5 6.0 89 8-96 115-213 (223)
69 TIGR02670 cas_csx8 CRISPR-asso 33.5 84 0.0018 26.7 4.5 67 6-72 71-146 (441)
70 PF10346 Con-6: Conidiation pr 32.7 79 0.0017 17.2 2.9 23 8-30 9-31 (36)
71 PRK09057 coproporphyrinogen II 31.6 2.3E+02 0.005 23.2 6.9 83 55-137 36-133 (380)
72 TIGR01544 HAD-SF-IE haloacid d 31.1 94 0.002 24.8 4.3 65 14-83 77-147 (277)
73 PRK08898 coproporphyrinogen II 30.5 2.9E+02 0.0063 22.8 7.3 81 55-135 54-149 (394)
74 PF07315 DUF1462: Protein of u 30.5 87 0.0019 20.8 3.4 28 83-111 16-43 (93)
75 cd07749 NT_Pol-beta-like_1 Nuc 30.3 46 0.00099 24.3 2.2 47 85-133 45-105 (156)
76 PF11748 DUF3306: Protein of u 30.2 81 0.0017 21.6 3.4 30 3-33 63-92 (115)
77 PRK08208 coproporphyrinogen II 29.3 3.3E+02 0.0071 22.8 7.5 63 55-117 72-139 (430)
78 PF02520 DUF148: Domain of unk 28.3 1.8E+02 0.004 19.3 7.4 43 6-48 4-46 (113)
79 cd02201 FtsZ_type1 FtsZ is a G 28.2 3.1E+02 0.0066 21.8 7.0 50 74-123 250-299 (304)
80 PRK08452 flagellar protein Fla 27.9 1.2E+02 0.0026 21.2 3.9 38 85-124 51-88 (124)
81 TIGR01158 SUI1_rel translation 27.4 1.8E+02 0.004 19.4 4.7 30 71-100 35-64 (101)
82 PRK00939 translation initiatio 27.3 1.8E+02 0.0038 19.4 4.5 31 71-101 34-64 (99)
83 PF06918 DUF1280: Protein of u 27.1 1E+02 0.0022 23.7 3.8 107 25-142 17-147 (224)
84 PRK08446 coproporphyrinogen II 26.4 3.5E+02 0.0076 21.9 7.3 78 55-134 32-124 (350)
85 PRK14951 DNA polymerase III su 26.4 1.8E+02 0.0038 26.0 5.6 73 40-114 497-569 (618)
86 TIGR02606 antidote_CC2985 puta 26.0 1.7E+02 0.0036 18.0 6.8 51 35-100 5-55 (69)
87 PF05823 Gp-FAR-1: Nematode fa 25.7 32 0.00068 24.9 0.7 91 7-98 43-135 (154)
88 PRK05660 HemN family oxidoredu 25.7 3.8E+02 0.0082 22.0 7.4 65 73-137 59-136 (378)
89 PF05291 Bystin: Bystin; Inte 25.4 3.6E+02 0.0079 21.9 6.7 90 9-100 174-275 (301)
90 PF07252 DUF1433: Protein of u 24.5 1.3E+02 0.0028 19.7 3.4 38 86-124 3-40 (88)
91 PRK07451 translation initiatio 24.3 1.9E+02 0.0041 20.0 4.3 29 72-100 50-78 (115)
92 PHA01351 putative minor struct 23.2 1.8E+02 0.0038 26.8 4.9 48 24-71 986-1034(1070)
93 PRK09330 cell division protein 23.0 4.2E+02 0.0091 22.2 6.9 50 75-124 264-313 (384)
94 PF14832 Tautomerase_3: Putati 22.8 1.5E+02 0.0033 20.9 3.8 24 77-100 5-29 (136)
95 PRK14958 DNA polymerase III su 22.6 2.9E+02 0.0062 23.9 6.1 41 72-114 413-455 (509)
96 PRK14969 DNA polymerase III su 22.6 1.4E+02 0.0031 25.9 4.2 29 84-114 448-476 (527)
97 PF15513 DUF4651: Domain of un 22.4 2E+02 0.0043 17.6 3.8 42 88-130 3-49 (62)
98 PF04695 Pex14_N: Peroxisomal 22.3 92 0.002 21.8 2.6 35 9-47 9-47 (136)
99 PF10262 Rdx: Rdx family; Int 21.6 1.7E+02 0.0038 18.0 3.5 41 87-130 15-55 (76)
100 PF04591 DUF596: Protein of un 21.4 2.2E+02 0.0049 17.9 3.9 27 118-144 4-30 (70)
101 KOG3311|consensus 21.0 88 0.0019 22.7 2.2 85 56-143 33-117 (152)
102 PF07216 LcrG: LcrG protein; 20.8 1.5E+02 0.0032 19.7 3.1 27 19-45 20-46 (93)
103 PF14584 DUF4446: Protein of u 20.6 64 0.0014 23.3 1.5 17 79-95 134-150 (151)
104 TIGR02573 LcrG_PcrG type III s 20.5 1.7E+02 0.0036 19.3 3.2 27 19-45 17-43 (90)
105 PF02885 Glycos_trans_3N: Glyc 20.4 2.1E+02 0.0045 17.1 4.9 43 8-51 5-48 (66)
106 COG4837 Uncharacterized protei 20.2 1.4E+02 0.003 20.1 2.8 28 82-110 22-49 (106)
No 1
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=1.1e-39 Score=243.47 Aligned_cols=142 Identities=23% Similarity=0.391 Sum_probs=137.7
Q ss_pred ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749 2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 81 (148)
Q Consensus 2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa 81 (148)
++.++|+|+.+|.||.++.++|.+++.++++ +++++.+.||+++|++++|+..+++|+++|.++++++.|+..|+|+||
T Consensus 34 ~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~-~~~~~~~~nfl~lL~e~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA 112 (184)
T PRK13434 34 LLFKDEKIRNFFLSPTVSPEEKEQTLAKNLR-GKISDITLNFLGVLLNKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSY 112 (184)
T ss_pred HHHcCHHHHHHHhCCCCCHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHcCeEEEEEEEc
Confidence 5678999999999999999999999999996 579999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749 82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQT 146 (148)
Q Consensus 82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~ 146 (148)
.|||++|+++|.+.|++++ |+++.++++|||+||||++|++||++||+|++++|++|++.|..
T Consensus 113 ~~Ls~~q~~~l~~~L~k~~--g~~v~l~~~vDpsLIGG~ii~igd~viD~Svk~~L~~l~~~l~~ 175 (184)
T PRK13434 113 PSLEPAQVDKLGSILSEKF--KSEFILEVSEDKNLLGGFVVQFNDLKIEKSIASQLGEIKKAMLE 175 (184)
T ss_pred CCCCHHHHHHHHHHHHHHH--CCEeEEEeeeChHHcCceEEEECCEEEeHhHHHHHHHHHHHHHh
Confidence 9999999999999999999 89999999999999999999999999999999999999999864
No 2
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=1.7e-39 Score=241.44 Aligned_cols=141 Identities=23% Similarity=0.325 Sum_probs=137.3
Q ss_pred ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749 2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 81 (148)
Q Consensus 2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa 81 (148)
++.++|+|+.+|.||.++.++|.+++..+|+ +++++.+.|||++|++++|+.++++|+++|.++++++.|+..|+|+||
T Consensus 38 ~~~~~~~l~~~l~~P~i~~~~K~~~l~~l~~-~~~~~~~~nfl~ll~~~~R~~~l~~I~~~f~~~~~~~~~~~~~~V~sA 116 (179)
T PRK13436 38 ILKNNKDLIKLLTSYFIDKEEKFKIIDKIFS-AKIDIYLVNFLKILAKNNLFIYIKQILKKFVKLSNEKLNITYGEIYTT 116 (179)
T ss_pred HHHcChHHHHHHcCCCCCHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHcCeEEEEEEec
Confidence 5778999999999999999999999999997 479999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhc
Q psy9749 82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQ 145 (148)
Q Consensus 82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~ 145 (148)
.|||++|+++|.+.|++++ |+++.++++|||+||||++|++||++||+|++++|+++++.|.
T Consensus 117 ~~Ls~~~~~~i~~~l~~~~--g~~v~l~~~vDpslIGGi~i~~gd~viD~Sik~~L~~l~~~l~ 178 (179)
T PRK13436 117 EPLSEVQISRFESKLSKKL--NKKVHLVNKIDPKLIAGIKIKVDNKVFENSIKSKLKELKKQVL 178 (179)
T ss_pred CCCCHHHHHHHHHHHHHHH--CCeEEEEeecCHHHcCceEEEECCEEeehhHHHHHHHHHHHHh
Confidence 9999999999999999999 8899999999999999999999999999999999999999885
No 3
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=100.00 E-value=3.7e-37 Score=228.40 Aligned_cols=142 Identities=31% Similarity=0.471 Sum_probs=135.9
Q ss_pred CccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEe
Q psy9749 1 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVIT 80 (148)
Q Consensus 1 ~l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~s 80 (148)
++++.+|+|+++|.||.++.++|.+++..+|++ ..++++.|||.++++++|+..+++|+.+|..+.++++|+..|+|+|
T Consensus 37 ~i~~~~~~l~~ll~sp~~~~~~k~~li~~i~~~-~~~~~~~nfL~ll~en~Rl~~l~~I~~~~~~l~~~~~~~~~a~V~S 115 (178)
T COG0712 37 EILKNSPKLKQLLSSPAVSAEDKKELLISIFKK-IGDPLLQNFLRLLAENKRLNLLPEILEEFLKLAAESRGIVEAEVTS 115 (178)
T ss_pred HHHhcCHhHHHHhcCcCCCHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhcCceEEEEEE
Confidence 467888999999999999999999999999973 4449999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhc
Q psy9749 81 ARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQ 145 (148)
Q Consensus 81 a~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~ 145 (148)
|+||+++|+++|.+.+++++ |+++.+.++|||+||||++|++||.++|+|++++|++++..+.
T Consensus 116 A~~Ls~~q~~~l~~~l~k~~--~~~v~i~~~VD~sliGG~iI~vgd~viD~Svr~~L~~l~~~l~ 178 (178)
T COG0712 116 AFELSDEQLTKLEAKLEKKF--GKKVKLNNKIDPSLIGGLIIKVGDEVIDGSVRGKLKRLAKALK 178 (178)
T ss_pred cCCCCHHHHHHHHHHHHHHh--CCCceEEeeeCHHHhCceEEEECCEEEechHHHHHHHHHHhcC
Confidence 99999999999999999999 8999999999999999999999999999999999999998763
No 4
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=5.1e-37 Score=241.08 Aligned_cols=142 Identities=27% Similarity=0.373 Sum_probs=137.8
Q ss_pred ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749 2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 81 (148)
Q Consensus 2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa 81 (148)
++.++|+|+.+|.||.++.++|.+++..+|+ +.+++.+.||+.++++++|+.++++|++.|.+++++++|+..|+|+||
T Consensus 130 ~l~~~~~l~~~L~~p~i~~e~K~~ll~~l~~-~~~~~~~~nfl~~lv~~~R~~~l~~i~~~f~~l~~~~~~~~~a~VtSA 208 (271)
T PRK13430 130 ILASNPELRLALSDRAAPAEAKRELLARLLY-GKVTPVTERLAEQAVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTA 208 (271)
T ss_pred HHHcCHHHHHHHhCCCCCHHHHHHHHHHHHh-ccCCHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHcCeeEEEEEec
Confidence 5778999999999999999999999999997 579999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749 82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQT 146 (148)
Q Consensus 82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~ 146 (148)
+||+++|+++|.+.|++++ |+++.++++|||+||||++|++||++||+|++++|+++++.|.+
T Consensus 209 ~pLs~~q~~~L~~~L~k~~--g~~V~l~~~VDpsLIGGivI~vGd~viD~Sv~~rL~~L~~~L~~ 271 (271)
T PRK13430 209 VPLSDEQKQRLAAALSRIY--GRPVHLNSEVDPSVLGGMRVQVGDEVIDGSVAGRLERLRRRLAG 271 (271)
T ss_pred CCCCHHHHHHHHHHHHHHH--CCceEEEeeECccccCcEEEEECCEEEehhHHHHHHHHHHHhcC
Confidence 9999999999999999999 89999999999999999999999999999999999999999863
No 5
>KOG1662|consensus
Probab=100.00 E-value=1.2e-36 Score=224.00 Aligned_cols=147 Identities=42% Similarity=0.741 Sum_probs=142.6
Q ss_pred CccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEe
Q psy9749 1 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVIT 80 (148)
Q Consensus 1 ~l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~s 80 (148)
|++..+|+|.+|+.||.++.+.|...++++.++.++.+.+.|||.+|+||||+..+..|..+|..++++|+|.+.|+|+|
T Consensus 63 ~v~k~~pk~~~f~~nP~l~~~~k~~~i~di~~~~~~~~~t~NflnlLaeNgRL~~l~~Ivk~F~~lm~ahrGev~~~VtS 142 (210)
T KOG1662|consen 63 QVLKTDPKFAQFVLNPTLTREKKKTAIDDIVEKLKLAPLTKNFLNLLAENGRLNNLTEIVKAFETLMNAHRGEVKVEVTS 142 (210)
T ss_pred HHHhcChHHHHHhcCCccchHHHHHHHHHHHHHhcccHhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHhCCceEEEEEe
Confidence 56788999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcCC
Q psy9749 81 ARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQTP 147 (148)
Q Consensus 81 a~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~~ 147 (148)
|.||++.+.++|++.|++.+++|+++.++++|||||+||++|++||+.+|+||+++++++.+.+.++
T Consensus 143 a~pLd~~~~k~l~~~l~k~l~~gk~l~v~~~vdPSI~GGliVeiGdK~vDmSI~tr~q~l~~ll~~~ 209 (210)
T KOG1662|consen 143 AEPLDAKQLKQLEKALQKILGGGKKLKVENKVDPSIIGGLIVEIGDKYVDMSIKTRLQKLNKLLEEP 209 (210)
T ss_pred cccCChHHHHHHHHHHHHHhcCCceEEEEeecChhhhcceEEEEcCeeEeeeHHHHHHHHHHHhhcc
Confidence 9999999999999999998878899999999999999999999999999999999999999988765
No 6
>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit. This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.
Probab=100.00 E-value=8.8e-35 Score=214.77 Aligned_cols=141 Identities=32% Similarity=0.561 Sum_probs=135.9
Q ss_pred CccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEe
Q psy9749 1 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVIT 80 (148)
Q Consensus 1 ~l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~s 80 (148)
++++++|+|++||.||.++.++|.+++..+|+ .++++.+.|||++|++++|+.++++|+.+|.++++++.|...++|+|
T Consensus 31 ~~~~~~~~l~~~l~~p~i~~~~K~~~l~~l~~-~~~~~~~~nfl~~l~~~~r~~~l~~I~~~~~~~~~~~~~~~~~~v~s 109 (172)
T TIGR01145 31 EVLKNNKELKKFLSNPLISAEKKKEFIKNVFG-EQLDESSLNLLLLLAENGRLAALPDILDQFLKLSYEAQQTADVEVIS 109 (172)
T ss_pred HHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhcCEEEEEEEE
Confidence 46788999999999999999999999999997 57999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHhcCCC-eEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHh
Q psy9749 81 ARPLEEADKSELQSTLKLFAKKGE-NILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLL 144 (148)
Q Consensus 81 a~~L~~~~~~~l~~~l~~~~~~~~-~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l 144 (148)
|+||+++++++|.+.|++++ |+ ++.+.+++||+++||+++++||++||+|++++|++|+++|
T Consensus 110 a~~L~~~~~~~l~~~l~~~~--~~~~v~~~~~vd~~ligGi~i~~~~~~iD~Si~~~L~~l~~~l 172 (172)
T TIGR01145 110 AKPLTEDQQAKIAEKLEKIT--GAAKVKLNCKVDKDLIGGVIIRIGDRVIDGSVRGQLKRLSRQL 172 (172)
T ss_pred ccCCCHHHHHHHHHHHHHHh--CCCeEEEEEeECHHHhCceEEEECCEEEehhHHHHHHHHHhhC
Confidence 99999999999999999998 66 9999999999999999999999999999999999999875
No 7
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=7.6e-35 Score=242.25 Aligned_cols=140 Identities=20% Similarity=0.341 Sum_probs=136.5
Q ss_pred ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEE
Q psy9749 2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKK--NFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVI 79 (148)
Q Consensus 2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~--~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~ 79 (148)
++.++|+|+.+|.||.+|.++|.+++..+|+ + ++++.+.||+.++++++|+..+++|+..|.+++++++|+..|+|+
T Consensus 302 ~l~~~~el~~~L~~p~i~~~~K~~ll~~l~~-~~~~~~~~~~nfl~~lv~~~R~~~l~~i~~~~~~l~~~~~g~~~a~Vt 380 (445)
T PRK13428 302 ILDAQPRLAILLSDYTVPADGRVALLRKVLG-GASTVNPVTVALLSQTVELLRGQPAEEAVLFLAELAVARRGEVVAQVS 380 (445)
T ss_pred HHhcCHHHHHHHhCCCCCHHHHHHHHHHHHh-ccccCCHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHHHCCeeEEEEE
Confidence 5788999999999999999999999999997 4 799999999999999999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHh
Q psy9749 80 TARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLL 144 (148)
Q Consensus 80 sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l 144 (148)
||.|||++|+++|.+.|+++| |+++.++++|||+||||++|++||.+||+|++++|+++++.|
T Consensus 381 sA~pLs~~q~~~L~~~L~k~~--g~~V~l~~~VDpsLiGGivI~vGd~viD~Sv~~rL~~l~~~l 443 (445)
T PRK13428 381 AAAELSDAQRTRLTEVLSRIY--GRPVSVQLHIDPELLGGLSIAVGDEVIDGTLSSRLAAAEAQL 443 (445)
T ss_pred eecCCCHHHHHHHHHHHHHHH--CCceEEEeeeCchhhCceEEEECCEEeehhHHHHHHHHHhhC
Confidence 999999999999999999999 899999999999999999999999999999999999999886
No 8
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated
Probab=100.00 E-value=1.2e-34 Score=216.28 Aligned_cols=144 Identities=28% Similarity=0.464 Sum_probs=137.7
Q ss_pred ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749 2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 81 (148)
Q Consensus 2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa 81 (148)
++.++|+|+++|.||.++.++|.+++..+|+ +++++.+.|||++|++++|+.++++|+.+|.++++++.|+..+.|+||
T Consensus 39 ~~~~~~~l~~~l~~p~i~~~~K~~ii~~~~~-~~~~~~~~nfl~~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa 117 (184)
T CHL00119 39 FLNESPELKKFLANPLISKNAKKEVIKKTFG-SQINENTLKFLMVLVDRGRIALLDAIIEKYLELVYKLASIKIAEVSTA 117 (184)
T ss_pred HHHcCHHHHHHHhCCCCCHHHHHHHHHHHHH-hccCHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCeEEEEEEec
Confidence 5778999999999999999999999999997 479999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcCC
Q psy9749 82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQTP 147 (148)
Q Consensus 82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~~ 147 (148)
+||+++++++|.+.|+++++ ++++.+.+++||+++||+++++|+++||+|++++|+++++.|..+
T Consensus 118 ~~L~~~~~~~l~~~L~~~~~-~~~v~l~~~vD~~ligGi~i~~g~~~~D~Si~~~L~~l~~~l~~~ 182 (184)
T CHL00119 118 VPLSSAQEEALIEKLKEMTN-AKEIKLVITVDPSLIGGFLIKIGSKVIDTSIKGQLKQLASHLDTV 182 (184)
T ss_pred cCCCHHHHHHHHHHHHHHhC-CCeEEEEeeeChHHhCcEEEEECCEEEeHhHHHHHHHHHHHHHHh
Confidence 99999999999999999882 378999999999999999999999999999999999999998764
No 9
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=6.9e-34 Score=211.46 Aligned_cols=137 Identities=20% Similarity=0.316 Sum_probs=130.3
Q ss_pred HHHHhhhCcCCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCC
Q psy9749 8 KFRDFVLDPTIQKSLKIEALKIVGQ--KKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLE 85 (148)
Q Consensus 8 ~l~~~l~~p~i~~~~K~~~l~~~~~--~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~ 85 (148)
+++.+|.||.+|.++|.++++.+++ ++++++.+.|||++|++++|+.++++|++.|..+++++.|+..|+|+||+||+
T Consensus 40 ~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~~~nfl~vL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~L~ 119 (180)
T PRK13441 40 SAKEFFDNPIVKPEKKVSLIKEIMKEFGQEMDEFFENFLNLVFENKRQKLLPQIRALFEYEKILSEQKVPVNLTTAHELS 119 (180)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHhcCeeEEEEEecccCC
Confidence 4578999999999999999999974 34689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749 86 EADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQT 146 (148)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~ 146 (148)
+++.++|.+.+++++ |+++.+.+++||+||||+++++||+++|+|++++|++|++.|..
T Consensus 120 ~~~~~~i~~~l~k~~--~~~v~l~~~vD~sliGG~~i~ig~~~~D~Sik~~L~~l~~~l~~ 178 (180)
T PRK13441 120 DEELKLLRKFVRKYV--LRDPVFEETIDESLIAGAVVEFEGKRLDVTVQGRLKKIAREVLK 178 (180)
T ss_pred HHHHHHHHHHHHHHH--CCcceEEeeeChHHhCcEEEEECCEEEeHhHHHHHHHHHHHHhh
Confidence 999999999999998 88999999999999999999999999999999999999998854
No 10
>PRK13429 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=8.7e-34 Score=210.90 Aligned_cols=143 Identities=27% Similarity=0.486 Sum_probs=137.6
Q ss_pred ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749 2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 81 (148)
Q Consensus 2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa 81 (148)
+++++|+|+.+|.||.++.++|.+++++++++.++++.+.|||++|++++|+.++++|+..|.++++++.|...++|+||
T Consensus 37 ~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa 116 (181)
T PRK13429 37 LLEDSPELRDALSNPVLSAEEKKAVLEKLLGKLKVSPEVLNFLKLLADRRRLGILPEIAARYLELADEQKGIVRATVTSA 116 (181)
T ss_pred HHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhCCEEEEEEEEe
Confidence 57789999999999999999999999999984349999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749 82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQT 146 (148)
Q Consensus 82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~ 146 (148)
+||++++.++|.+.|++.+ |+.+.+.+++||+++||+++++||++||+|++++|+++++.|..
T Consensus 117 ~~ls~~~~~~l~~~L~~~~--~~~~~~~~~vd~sligG~~i~~~~~~iD~Si~~~L~~l~~~l~~ 179 (181)
T PRK13429 117 VPLSEAQQEAIRQKLEKMT--GKKVELDTAVDPSLIGGVVVKIGDKVLDASVRTQLRRLKETLKK 179 (181)
T ss_pred ecCCHHHHHHHHHHHHHHH--CCEEEEEeeeChhhhCceEEEECCEEEehhHHHHHHHHHHHHhc
Confidence 9999999999999999998 89999999999999999999999999999999999999998864
No 11
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=100.00 E-value=6.9e-34 Score=210.85 Aligned_cols=136 Identities=26% Similarity=0.318 Sum_probs=129.3
Q ss_pred ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749 2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 81 (148)
Q Consensus 2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa 81 (148)
++ ++|+|+.||.||.++.++|.+++..+++ +.++.+.|||++|++++|+.++++|+..|..++++++|+..|+|+||
T Consensus 35 ~~-~~~~l~~~l~~P~i~~~~K~~vi~~~~~--~~~~~~~nFL~vLi~n~R~~~L~~I~~~f~~~~~~~~~~~~~~V~SA 111 (176)
T PRK08474 35 AF-ADEKFKEIISSPEISKEQKIEFLLSFVD--NANAKFQNFIKLLAENKRLELIPAIAKELERQIALKENEYVGVVYSN 111 (176)
T ss_pred HH-CChhHHHHHhCCCCCHHHHHHHHHHHHh--ccCHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHcCeEEEEEEEC
Confidence 45 4799999999999999999999999997 45899999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749 82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQT 146 (148)
Q Consensus 82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~ 146 (148)
.|||++|+++|.+.|++++ |+++.+++.+|| |||++|++||++||+|++ |++|+..|.+
T Consensus 112 ~~Ls~~q~~~i~~~l~~~~--g~~v~l~~~vD~--IGG~ii~igd~v~D~s~~--l~~~~~~~~~ 170 (176)
T PRK08474 112 EKLSEETLKKLEEKLSKKF--NAKIKLKQKKSD--YDGIKVEVDDLGVEVSFS--KDRLKNQLIE 170 (176)
T ss_pred ccCCHHHHHHHHHHHHHHh--CCeEEEEEEEcC--CCCEEEEECCEEEEeeee--HHHHHHHHHH
Confidence 9999999999999999998 899999999999 999999999999999776 9999988764
No 12
>PRK05758 F0F1 ATP synthase subunit delta; Validated
Probab=100.00 E-value=3.1e-33 Score=207.22 Aligned_cols=140 Identities=31% Similarity=0.500 Sum_probs=135.5
Q ss_pred ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749 2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 81 (148)
Q Consensus 2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa 81 (148)
++.++|+|+.||.||.++.++|.++++++|++ .++.+.|||.+|++++|+.++++|+.+|.+++++..++..++|+||
T Consensus 37 ~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~--~~~~~~nfL~~l~~~~r~~~l~~i~~~~~~~~~~~~~~~~~~v~sa 114 (177)
T PRK05758 37 EVAENEDLAALLSSPLVSAEQKKKLLAAVFKS--LSEYVQNFLKVLAENGRLALLPEILEQFEALRAEHENIVDAEVTSA 114 (177)
T ss_pred HHhcCHHHHHHHhCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHcCEEEEEEEEc
Confidence 57889999999999999999999999999973 4999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhc
Q psy9749 82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQ 145 (148)
Q Consensus 82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~ 145 (148)
+||+++++++|.+.|++.+ |+++.+.+++||+++||+++++|++++|+|++++|+++++.|.
T Consensus 115 ~~l~~~~~~~i~~~l~~~~--~~~v~l~~~vd~~ligG~~i~~~~~~~d~Si~~~L~~l~~~l~ 176 (177)
T PRK05758 115 FPLSEEQLDKLKAALEKRL--GRKVKLNEKVDPSLIGGVIIKVGDRVIDGSVRGKLERLKDALK 176 (177)
T ss_pred cCCCHHHHHHHHHHHHHHH--CCeeEEEeeEChHHhCceEEEECCEEeehhHHHHHHHHHHHhc
Confidence 9999999999999999998 8899999999999999999999999999999999999999885
No 13
>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.
Probab=100.00 E-value=4.8e-37 Score=226.48 Aligned_cols=140 Identities=34% Similarity=0.555 Sum_probs=100.1
Q ss_pred ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749 2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 81 (148)
Q Consensus 2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa 81 (148)
++.++|+|+.+|.||.+|.++|.+++..+|+ +++++.+.|||++|++++|+.++++|+.+|.++++.+.|+..|+|+||
T Consensus 32 ~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~-~~~~~~~~nfL~~l~~~~r~~~l~~i~~~~~~~~~~~~~~~~~~V~sA 110 (172)
T PF00213_consen 32 ILKSNPELRKFLESPFIPKEEKKELLDEIFK-GKLSEETVNFLKLLIDNNRLSLLPEILEEFEELVNEHNGIVEATVTSA 110 (172)
T ss_dssp HHCCSCCCHHHHT-TTTTCCCCCCCCCHHCT-TT-SCCCCHHHHHHCCTT-CCCHHHHHHHHHHHHHHHCCTS-B-SSS-
T ss_pred HHhcCHHHHHHHcCccccHHHHHHHHHHHHc-ccCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHcCeEEEEEEEe
Confidence 4678999999999999999999999999997 379999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCC-eEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHh
Q psy9749 82 RPLEEADKSELQSTLKLFAKKGE-NILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLL 144 (148)
Q Consensus 82 ~~L~~~~~~~l~~~l~~~~~~~~-~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l 144 (148)
+||+++|+++|.+.+++++ |+ ++.++++|||+||||++|++||++||+|++++|++++++|
T Consensus 111 ~~l~~~q~~~l~~~l~~~~--~~~~v~~~~~vD~sLigG~~i~~~~~~iD~Sv~~~L~~l~~~L 172 (172)
T PF00213_consen 111 FPLSEEQKKKLEKKLKKKY--GKKKVELNYKVDPSLIGGFIIEVGDKVIDASVKSRLEQLKKEL 172 (172)
T ss_dssp B----SSSTTTTTTCCCTT--TT-------------------------TTTTTTTTTTTT-TTT
T ss_pred cCCCHHHHHHHHHHHHHHH--CCCeeeEEEEEccccCcEEEEEECCEEEehhHHHHHHHHHhcC
Confidence 9999999999999999999 66 8999999999999999999999999999999999998765
No 14
>PRK13431 F0F1 ATP synthase subunit delta; Provisional
Probab=99.86 E-value=7.9e-21 Score=140.94 Aligned_cols=123 Identities=11% Similarity=0.185 Sum_probs=110.0
Q ss_pred ccccchHHHHhhhCcCCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEE
Q psy9749 2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQ---KKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEV 78 (148)
Q Consensus 2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~---~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v 78 (148)
+|.. ++|+.++.+|.+ ++|.+++.++|. ...+++.+.||+++|++|+|+..+|+|+.. +++++.|+..|+|
T Consensus 39 ~f~~-~el~~il~~P~~--~~Kkk~l~~l~~~a~~~~~~~~~~NFl~LL~en~Rl~~LpeIa~~---L~~~~~~i~~~~V 112 (180)
T PRK13431 39 AIKL-HKLNQVLAHVSL--KVKKEVVFEILEKITSIKACSVLKPVMEVVLKNNRLDMLELITEE---LSFDSKRTLEATL 112 (180)
T ss_pred HHcc-HHHHHHHhCccH--HHHHHHHHHHHhhhccccccHHHHHHHHHHHHcChHHHHHHHHHH---HHHHHcCeEEEEE
Confidence 3455 799999999999 778887777775 136899999999999999999999999994 9999999999999
Q ss_pred EeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHH
Q psy9749 79 ITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVA 134 (148)
Q Consensus 79 ~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~ 134 (148)
+||+||++++.++|.+.|++++ |+++.+...+++ .-|++|.++|.-++.|..
T Consensus 113 ~SA~~Ls~~~~~~I~~~L~kk~--g~kV~L~~~~~~--~~gik~~v~~lg~ei~fs 164 (180)
T PRK13431 113 LVPEKLENNELEAVQQKLQARF--NAPVEIAQDTWS--KKGVSLSVSSLDLEIGFS 164 (180)
T ss_pred EecccCCHHHHHHHHHHHHHHH--CCeEEEEeeccC--CCceEEEEecCceEEEee
Confidence 9999999999999999999999 889999999998 599999999887777665
No 15
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=99.80 E-value=1.1e-18 Score=135.55 Aligned_cols=98 Identities=20% Similarity=0.357 Sum_probs=80.3
Q ss_pred HHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeE
Q psy9749 42 NLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMI 121 (148)
Q Consensus 42 nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~ 121 (148)
.++.-+++ ++..+|+--..+........| ..++|+||+|||++++++|.+.|++.+ |+++.+.+.+||+|||||+
T Consensus 148 ~lid~~i~--~l~~l~~~~~~~l~~~~~~~~-~~~~v~sa~~l~~~~~~~i~~~l~~~~--~~~v~~~~~vdp~ligGi~ 222 (246)
T TIGR03321 148 RMVDVFVQ--RLRTLDPDEKAALAEALADSG-NPVLVRSAFELPEEQREQIRDTIRETL--GPEIRLRFQTEPDLIGGIE 222 (246)
T ss_pred HHHHHHHH--HhhcCCHHHHHHHHHHHhCCC-CceEEEecCCCCHHHHHHHHHHHHHHH--CCCeeEEeeeCchhcCceE
Confidence 45555554 455555554444433333333 569999999999999999999999999 8899999999999999999
Q ss_pred EEECCEEeehhHHHHHHHHHHHh
Q psy9749 122 VSVGDKYVDMSVASKIKKYTDLL 144 (148)
Q Consensus 122 i~vg~~~iD~Sv~~~L~~l~~~l 144 (148)
|++||++||||++++|++|++.+
T Consensus 223 l~~g~~~id~Si~~~L~~l~~~~ 245 (246)
T TIGR03321 223 LTAGGHKLAWSVDDYLESLEEDV 245 (246)
T ss_pred EEECCEEEechHHHHHHHHHhhc
Confidence 99999999999999999999876
No 16
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=99.40 E-value=3.5e-12 Score=99.40 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=69.2
Q ss_pred cCCccEEEEeecCCCHHHHHHHHHHHHH-HhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749 71 RGDLPVEVITARPLEEADKSELQSTLKL-FAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQT 146 (148)
Q Consensus 71 ~~~~~~~v~sa~~L~~~~~~~l~~~l~~-~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~ 146 (148)
.+...+.|+||+||++++++++++.|.. .+ |..+.+.|.+||+||+|+.+++||+.+.||+.++|+.|...+..
T Consensus 173 ~~~~~~~i~ta~~l~~~~~~~~~~~l~~~~~--~~~~~~~f~~~p~li~Giel~~~~~~i~ws~~~yl~~l~~~~~~ 247 (250)
T PRK14474 173 TTPEMLRIRTSFELSQDLRAQILESLHQTHL--IPGTDIHFVTSPELICGIELKTEGYKIAWTLAEYLDALESQLTT 247 (250)
T ss_pred cCCCCeEEEeCCCCCHHHHHHHHHHHHHHhc--CCCCceeeecCcccccCeEEecCCceEeccHHHHHHHHHHHHHH
Confidence 4566799999999999999999999999 88 88999999999999999999999999999999999999987754
No 17
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=98.03 E-value=5e-06 Score=65.82 Aligned_cols=102 Identities=15% Similarity=0.175 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCcc-
Q psy9749 39 ASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSII- 117 (148)
Q Consensus 39 ~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~li- 117 (148)
...+++..+.++++...++.|-+.+..+.+ ...++|+. .|-+-+........+...+ +....+.+..||++-
T Consensus 175 iaekvi~~~~~~~~~~i~~li~~al~~l~~----~~~i~I~V-~p~d~~~l~~~~~~l~~~l--~~~~~i~I~~D~~l~~ 247 (281)
T PRK06669 175 IAKKVIKEISENSKEIALALVKELLKEVKD----ATDITIRV-NPEDYEYVKEQKDELISLL--DNEEHLKIYEDDAISK 247 (281)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHcCc----CCcEEEEE-CHHHHHHHHHhHHHHHHhc--CCCCCeEEEECCCCCC
Confidence 345777777888777666666666665543 23355544 3322233333333344445 444567777777664
Q ss_pred ceeEEEECCEEeehhHHHHHHHHHHHhcCC
Q psy9749 118 GGMIVSVGDKYVDMSVASKIKKYTDLLQTP 147 (148)
Q Consensus 118 gGi~i~vg~~~iD~Sv~~~L~~l~~~l~~~ 147 (148)
||.+|+.++-.+|+|+.++|+++++.|.++
T Consensus 248 GgcvIet~~G~IDasi~tqLe~l~~~L~e~ 277 (281)
T PRK06669 248 GGCVIETDFGNIDARIDTQLKQLKEKLLEN 277 (281)
T ss_pred CCeEEEcCCCeeeccHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998764
No 18
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=97.40 E-value=0.018 Score=43.06 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEE--ECCEEeehhHH
Q psy9749 57 DGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVS--VGDKYVDMSVA 134 (148)
Q Consensus 57 ~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~--vg~~~iD~Sv~ 134 (148)
..++..+..-.....+...+.|+ +.|=+.+-.+.....+.+.+ | .+.+...-++..+|||++. -|+.++|.|+.
T Consensus 103 ~~~l~~li~~a~~~l~~~~i~i~-~~~~D~~~~~~~~~~~~~~~--~-~~~i~~~~~~~~~GGvil~s~~g~i~~dnT~e 178 (198)
T PRK03963 103 FETLKALTKEAVEELGEDKVVVR-SNERTLKLIDSRLEEIRDEL--G-DVEIELGEPIETIGGVIVETKDGTIRVDNTFE 178 (198)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEE-EccccHHHHHHHHHHHHHHh--C-CeEEEECCCCCccceEEEEeCCCCEEEeCcHH
Confidence 34444444333333333334444 34434444444445555555 4 3444433345679999998 67788999999
Q ss_pred HHHHHHHHHhc
Q psy9749 135 SKIKKYTDLLQ 145 (148)
Q Consensus 135 ~~L~~l~~~l~ 145 (148)
++|+.++..+.
T Consensus 179 ~~l~~~~~~~~ 189 (198)
T PRK03963 179 ARMERLESELR 189 (198)
T ss_pred HHHHHHHHHhH
Confidence 99999988764
No 19
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=97.00 E-value=0.011 Score=44.02 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=29.9
Q ss_pred eeCCCccceeEEE--ECCEEeehhHHHHHHHHHHHhc
Q psy9749 111 KVDPSIIGGMIVS--VGDKYVDMSVASKIKKYTDLLQ 145 (148)
Q Consensus 111 ~vD~~ligGi~i~--vg~~~iD~Sv~~~L~~l~~~l~ 145 (148)
.-+++.+|||++. -|+-++|.|+.++|+.+...+.
T Consensus 142 ~~~~~~~GGvil~~~~g~I~~dnT~~~rl~~~~~~~~ 178 (188)
T PRK02292 142 AGNIDCLGGVVVESEDGRVRVNNTFDSILEDVWEDNL 178 (188)
T ss_pred CCCCCCCceEEEEecCCceEEeccHHHHHHHHHHHhh
Confidence 3468899999998 5778899999999999988764
No 20
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=97.00 E-value=0.0029 Score=50.03 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=48.4
Q ss_pred ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHH
Q psy9749 2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVIN 61 (148)
Q Consensus 2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~ 61 (148)
++..+|.++..|+||..|.+.|..++..+|+ +++++.+.+++..++.. |++.=+++.+
T Consensus 40 ~l~~~~~lrral~dp~~~~~~k~~L~~~l~~-~kv~~~~~~~~~~~v~~-rWs~~~dl~~ 97 (271)
T PRK13430 40 VLDRERSLRRALTDPARPPEAKVELVKRLFG-GKVSPATLEVVSDAVRQ-RWSRPRDLAD 97 (271)
T ss_pred HHccchHHHHhcCCCCCChHHHHHHHHHHhc-ccCCHHHHHHHHHHHHh-hccCchhHHH
Confidence 5788999999999999999999999999997 68999999999988875 3333333333
No 21
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=96.98 E-value=0.0057 Score=47.84 Aligned_cols=82 Identities=13% Similarity=0.114 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHH---HHHHHHHhcCCCeEEEeeeeCCCcc-ceeEEEECCEEeeh
Q psy9749 56 IDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSEL---QSTLKLFAKKGENILLTTKVDPSII-GGMIVSVGDKYVDM 131 (148)
Q Consensus 56 l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l---~~~l~~~~~~~~~i~l~~~vD~~li-gGi~i~vg~~~iD~ 131 (148)
+..++..+...+. +...++|+. ++++.+.+ ...+...+ +....+....||+|- ||.+|..++=.+|+
T Consensus 161 i~~lv~~al~~l~---~~~~i~I~v----~p~d~~~v~~~~~~l~~~~--~~~~~i~i~~D~~l~~GgcvIEt~~G~iDa 231 (255)
T TIGR03825 161 FQALVRQVLSEVR---EFDEVSIYV----HPHWYERVAAQKDELQSIL--PACEHLAVYPDEKLPDGGCYVETNFGRIDA 231 (255)
T ss_pred HHHHHHHHHHhcc---CCCcEEEEE----CHHHHHHHHHhHHHHHhhc--CCCCceEEEeCCCCCCCCeEEEcCCceEEe
Confidence 4444444444333 233455543 34444444 44455555 445678899999997 99999999999999
Q ss_pred hHHHHHHHHHHHhcC
Q psy9749 132 SVASKIKKYTDLLQT 146 (148)
Q Consensus 132 Sv~~~L~~l~~~l~~ 146 (148)
|+.++|++++..|.+
T Consensus 232 sldtqLe~l~~~l~~ 246 (255)
T TIGR03825 232 SVDTQLEQLKEKLLE 246 (255)
T ss_pred eHHHHHHHHHHHHHH
Confidence 999999999998754
No 22
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=95.98 E-value=0.094 Score=35.96 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=47.5
Q ss_pred hcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCcc-ceeEEEECCEEeehhHHHHHHHH
Q psy9749 70 HRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSII-GGMIVSVGDKYVDMSVASKIKKY 140 (148)
Q Consensus 70 ~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~li-gGi~i~vg~~~iD~Sv~~~L~~l 140 (148)
..+...++|+ +++++.+.+.+.+..... ...+.+..||++- ||++|+.++-.+|+|+.++|+++
T Consensus 64 ~~~~~~v~I~----v~p~d~~~l~~~~~~~~~---~~~~~l~~D~~l~~G~c~iet~~g~iD~~i~~ql~~l 128 (128)
T PF02108_consen 64 PRDEEKVTIR----VHPDDYEALEELLEDELP---ELGWELVADPSLAPGDCRIETEDGIIDASIETQLEAL 128 (128)
T ss_pred hccCCCeEEE----ECHHHHHHHHHHHHHHHh---hcCCEEEecCCCCCCCEEEEECCeeEEeCHHHHHhcC
Confidence 3334445555 368889999988885542 2223888888864 67999999999999999999864
No 23
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=95.64 E-value=0.017 Score=42.79 Aligned_cols=87 Identities=22% Similarity=0.286 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHH---HHHhcCC-CeEEEeeeeCC----CccceeEEEE--
Q psy9749 55 NIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTL---KLFAKKG-ENILLTTKVDP----SIIGGMIVSV-- 124 (148)
Q Consensus 55 ~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l---~~~~~~~-~~i~l~~~vD~----~ligGi~i~v-- 124 (148)
....++..+........+...+.|+. ++++...+.+.+ .+.++.+ ....+....|+ +++|||+|..
T Consensus 94 ~Y~~~L~~li~~~~~~~~~~~~~v~~----~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~il~~~d 169 (198)
T PF01991_consen 94 DYKKFLKKLIEEAAEKLGEGEVIVYV----NKKDLELVKEILKRIKKELKSKAGKDSVEVSVDSDYLIDIIGGFILESED 169 (198)
T ss_dssp THHHHHHHHHHHHHHCCTTSCEEEEE----CCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T---BSSSSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEec----ccchHHHHHHHHHHHHHHHHHHhCCCcceeecCccccCCccceEEEEECC
Confidence 46677777776666655555566653 333444444432 2223110 11124556665 8999999996
Q ss_pred CCEEeehhHHHHHHHHHHHhc
Q psy9749 125 GDKYVDMSVASKIKKYTDLLQ 145 (148)
Q Consensus 125 g~~~iD~Sv~~~L~~l~~~l~ 145 (148)
|+..+|+|+.++|+.+...+.
T Consensus 170 g~i~vd~T~e~~l~~~~~~~~ 190 (198)
T PF01991_consen 170 GKIRVDNTFESRLERLKEEIR 190 (198)
T ss_dssp SSCEEEEEHHHHHHHCHHHHH
T ss_pred CCEEEECCHHHHHHHHHHHhH
Confidence 579999999999999887664
No 24
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=95.43 E-value=0.054 Score=45.76 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=48.4
Q ss_pred ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHH
Q psy9749 2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINN 62 (148)
Q Consensus 2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~ 62 (148)
++..++.|+..|+||.-|.+.|..++..+|+ +++++.+..++.-++.. |++.=.++...
T Consensus 212 ~l~~~~~lrr~l~d~~~~~~~k~~l~~~l~~-~~~~~~~~~~~~~~~~~-rws~~~dl~~~ 270 (445)
T PRK13428 212 LLDREPVLTKHLTEPAEDAAPKIRLVERLFS-GKVGAPTLEVLRTAVSQ-RWSANSDLIDA 270 (445)
T ss_pred HHcccHHHHHHcCCCCCChhhHHHHHHHHhC-cCCCHHHHHHHHHHHhC-ccCccccHHHH
Confidence 5788999999999999999999999999997 68999999999888764 44333333333
No 25
>PRK06328 type III secretion system protein; Validated
Probab=95.30 E-value=0.14 Score=39.33 Aligned_cols=68 Identities=10% Similarity=0.155 Sum_probs=51.0
Q ss_pred CccEEEEeecCCCHHHHHHHHHHH---HHHhcCCCeEEEeeeeCCCcc-ceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749 73 DLPVEVITARPLEEADKSELQSTL---KLFAKKGENILLTTKVDPSII-GGMIVSVGDKYVDMSVASKIKKYTDLLQT 146 (148)
Q Consensus 73 ~~~~~v~sa~~L~~~~~~~l~~~l---~~~~~~~~~i~l~~~vD~~li-gGi~i~vg~~~iD~Sv~~~L~~l~~~l~~ 146 (148)
...++|+ +++++.+.+.+.. ...+ +....+....||+|- ||.+|+.+.=.+|+|+.++|+.+++.+.+
T Consensus 131 ~~~v~I~----VnP~D~~~v~~~~~~l~~~~--~~~~~~~I~~D~~L~~GgCiIET~~G~VDasle~ql~~l~~al~~ 202 (223)
T PRK06328 131 HKRIIIH----VNPKDLAIVEKSRPELKKIV--EYADSLIISPKADVTPGGCIIETEAGIINAQLDVQLAALEKAFST 202 (223)
T ss_pred CCceEEE----ECHHHHHHHHHHHHHHHHhc--cCCCceEEEeCCCCCCCCeEEEeCCceEEecHHHHHHHHHHHHHH
Confidence 3345554 4566777776654 4444 334578899999885 66999999999999999999999988754
No 26
>PRK06937 type III secretion system protein; Reviewed
Probab=95.25 E-value=0.25 Score=37.28 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=53.5
Q ss_pred HhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcC-CCeEEEeeeeCCCcc-ceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749 69 AHRGDLPVEVITARPLEEADKSELQSTLKLFAKK-GENILLTTKVDPSII-GGMIVSVGDKYVDMSVASKIKKYTDLLQT 146 (148)
Q Consensus 69 ~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~-~~~i~l~~~vD~~li-gGi~i~vg~~~iD~Sv~~~L~~l~~~l~~ 146 (148)
...+...+.|+ +++++.+.+.+.+...+.. +..-.+....||+|- ||.+|+.+.=.+|+|+.++|+.+++.|.+
T Consensus 126 ~l~~~~~v~I~----V~P~D~~~v~~~~~~~~~~~~~~~~l~i~~D~~L~~Ggc~iET~~G~vDasl~tql~~l~~al~~ 201 (204)
T PRK06937 126 LVSNQKQVVVR----VNPDQAAAVREQIAKVLKDFPEVGYLEVVADARLDQGGCILETEVGIIDASLDGQLEALEQAFHS 201 (204)
T ss_pred hcccCCeEEEE----ECHHHHHHHHHHHHHHHHhCCCCccEEEEeCCCCCCCCeEEecCCceEEccHHHHHHHHHHHHHH
Confidence 33344455555 4567777777765543310 223458889999975 77999999999999999999999998865
No 27
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=95.16 E-value=0.13 Score=39.81 Aligned_cols=60 Identities=22% Similarity=0.214 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCcc-ceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749 84 LEEADKSELQSTLKLFAKKGENILLTTKVDPSII-GGMIVSVGDKYVDMSVASKIKKYTDLLQT 146 (148)
Q Consensus 84 L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~li-gGi~i~vg~~~iD~Sv~~~L~~l~~~l~~ 146 (148)
+.+++.+.+++.+...+. .-.+....||+|- ||.+|..++-.+|+|+.++++++.+.|..
T Consensus 182 v~P~D~~~v~~~~~~~~~---~~~~~l~~D~~l~~Ggc~iet~~g~vDa~l~~r~~~l~~~l~~ 242 (246)
T PRK05687 182 VNPDDLELVEQLLGAELS---LHGWRLLADPSLHRGGCRISAEEGDVDASLETRWQEVCRLLAP 242 (246)
T ss_pred ECHHHHHHHHHHHhhHHH---hCCeEEEeCCCcCCCCeEEEeCCCceeccHHHHHHHHHHHHhc
Confidence 578889999888775441 1247889999986 78999999999999999999999998764
No 28
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=94.64 E-value=0.4 Score=36.13 Aligned_cols=64 Identities=30% Similarity=0.285 Sum_probs=43.7
Q ss_pred ccEEEEeecCCCHHHHHHHHH----HHHHHhcCCCeEEEeeeeCCCccceeEEE--ECCEEeehhHHHHHHHHHHHhc
Q psy9749 74 LPVEVITARPLEEADKSELQS----TLKLFAKKGENILLTTKVDPSIIGGMIVS--VGDKYVDMSVASKIKKYTDLLQ 145 (148)
Q Consensus 74 ~~~~v~sa~~L~~~~~~~l~~----~l~~~~~~~~~i~l~~~vD~~ligGi~i~--vg~~~iD~Sv~~~L~~l~~~l~ 145 (148)
..+.|++ ++++...+.+ .+.+.+ +..+.+ ..+...+|||+|. =|+..+|.|..+..+-|+..|.
T Consensus 119 ~~~~I~~----~~~D~~~l~~~~~~~~~~~l--~~gi~i--~~~~~~~gG~iv~~~dg~i~id~T~ea~~~~l~~~L~ 188 (198)
T PRK01558 119 DKLEIIL----NESDLSELESILRAALGNKL--KKGIEL--KPFKGISKGFKIQQKDGSLYYDFSAEAIADILFSYLN 188 (198)
T ss_pred CCeeEEE----CHHHHHHhHHHHHHHHHHHh--cCCeEE--cccCCcccceEEEEcCCCeEEeCcHHHHHHHHHHHhc
Confidence 4455553 3444544444 444555 344444 4456699999999 6999999999999999988764
No 29
>PRK09098 type III secretion system protein HrpB; Validated
Probab=94.25 E-value=0.5 Score=36.62 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHHhc-CCCeEEEeeeeCCCcc-ceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749 84 LEEADKSELQSTLKLFAK-KGENILLTTKVDPSII-GGMIVSVGDKYVDMSVASKIKKYTDLLQT 146 (148)
Q Consensus 84 L~~~~~~~l~~~l~~~~~-~~~~i~l~~~vD~~li-gGi~i~vg~~~iD~Sv~~~L~~l~~~l~~ 146 (148)
+++++.+.+.+.+..... .|....+...-||+|- ||.+|+.++=.+|+|+.++|+.+++.+.+
T Consensus 157 V~P~D~~~v~~~~~~~~~~~g~~~~l~Iv~Dp~L~~GgCviET~~G~IDasl~~ql~~L~~al~~ 221 (233)
T PRK09098 157 VHPADLDAARAAFGAAAAAGGRNVPVEVVGDPRLAPGACVCEWDFGVFDASLDTQLRALRRALAR 221 (233)
T ss_pred ECHHHHHHHHHHHHHHHHhcCCCcceEEEeCCCCCCCCeEEEeCCCeEecCHHHHHHHHHHHHHH
Confidence 356667777766554321 2566788999999997 66999999999999999999999987754
No 30
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=93.91 E-value=1.3 Score=33.44 Aligned_cols=93 Identities=18% Similarity=0.175 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccce
Q psy9749 40 SINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGG 119 (148)
Q Consensus 40 ~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligG 119 (148)
+..-|.-+....+... +..+..-.........+.|+++.. ....+.+.+.. ..+........+.+||
T Consensus 90 ~~e~L~~i~~~~~~~~----l~~ll~~~~~~~~~~~~iV~~~e~----d~~~v~~~~~~-----~~~~~~~~~~~d~~GG 156 (194)
T COG1390 90 VEEKLRNIASDPEYES----LQELLIEALEKLLGGELVVYLNEK----DKALVEQILRE-----LKIGVELGEGIDIIGG 156 (194)
T ss_pred HHHHHHcCcCCcchHH----HHHHHHHHHHhcCCCCeEEEeCcc----cHHHHHHHHhh-----cccchhccccCCCcce
Confidence 3333444444444433 333333333344444455555443 23333333332 1222333333567899
Q ss_pred eEEEE--CCEEeehhHHHHHHHHHHHhc
Q psy9749 120 MIVSV--GDKYVDMSVASKIKKYTDLLQ 145 (148)
Q Consensus 120 i~i~v--g~~~iD~Sv~~~L~~l~~~l~ 145 (148)
+++.. |...+|.|+.+.|+.+...+.
T Consensus 157 vvv~~~dG~i~~dnt~~sil~~~~e~~~ 184 (194)
T COG1390 157 VVVESRDGKIRLDNTFESILERVLEELL 184 (194)
T ss_pred EEEEeCCCceeecCcHHHHHHHHHHHHH
Confidence 99999 668999999999999887653
No 31
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=93.10 E-value=1.1 Score=33.32 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=28.7
Q ss_pred CCCccceeEEE--ECCEEeehhHHHHHHHHHHHhc
Q psy9749 113 DPSIIGGMIVS--VGDKYVDMSVASKIKKYTDLLQ 145 (148)
Q Consensus 113 D~~ligGi~i~--vg~~~iD~Sv~~~L~~l~~~l~ 145 (148)
+++.+|||++. -|+..+|+|+..-++++...+.
T Consensus 142 ~~~~~GGvil~s~dG~I~ld~~l~~~~~~~~~~iR 176 (185)
T PRK01194 142 DIDPYGGILAYSRDGKRELDLRLSSIFENILEDLK 176 (185)
T ss_pred CccccccEEEEeCCCcEEehhhHHHHHHHhHHHHH
Confidence 57799999999 7999999999999988876653
No 32
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.28 E-value=1.2 Score=34.49 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHHhc-CCCeEEEeeeeCCCc-cceeEEEECCEEeehhHHHHHHHHHHHhcC
Q psy9749 84 LEEADKSELQSTLKLFAK-KGENILLTTKVDPSI-IGGMIVSVGDKYVDMSVASKIKKYTDLLQT 146 (148)
Q Consensus 84 L~~~~~~~l~~~l~~~~~-~~~~i~l~~~vD~~l-igGi~i~vg~~~iD~Sv~~~L~~l~~~l~~ 146 (148)
+.+++.+.+++.+....+ .+.. +...-||++ -||-+|..+.=.+|+|+.+||.++++.+.+
T Consensus 164 VnP~d~e~i~~~~~~~~~~~~~~--l~l~~D~~l~~GgC~IeTe~G~iDasld~ql~~L~~~~~~ 226 (234)
T COG1317 164 VNPDDLEIIRQQLDEELSLLGWR--LELVADPALSPGGCIIETEFGIIDASLDTQLAALKRALLE 226 (234)
T ss_pred ECHHHHHHHHHHHHHHHhhcchh--eeeccCCCCCCCCeEEEecCccccccHHHHHHHHHHHHHh
Confidence 467788888887754321 0223 778888887 489999999999999999999999998764
No 33
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=91.52 E-value=1.2 Score=34.48 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCc-cceeEEEECCEEeehhHHHHHHHHHHHhc
Q psy9749 84 LEEADKSELQSTLKLFAKKGENILLTTKVDPSI-IGGMIVSVGDKYVDMSVASKIKKYTDLLQ 145 (148)
Q Consensus 84 L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~l-igGi~i~vg~~~iD~Sv~~~L~~l~~~l~ 145 (148)
+++++.+.|.+.+.... -.+....||+| -||.+|..++-.+|+|+.+||+++-..+.
T Consensus 169 vnP~D~~~l~~~~~e~~-----~~~~l~~D~~l~~GgC~Iet~~g~iDa~ietRl~~~~~~l~ 226 (236)
T PRK13386 169 LNPEEFGRLKDLAPEKV-----QAWGLVADPSLSAGECRIVTDTSEADAGCEHRLDACMDAVK 226 (236)
T ss_pred ECHHHHHHHHHhhhccc-----cCeEEEeCCCcCCCCEEEEeCCceEeeCHHHHHHHHHHHHH
Confidence 57888888887765432 24677888887 49999999999999999999998777654
No 34
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=91.28 E-value=2.9 Score=31.39 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=53.4
Q ss_pred HHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhc-CCCeEEEeeeeCCCc-cceeEEEECCEEeehhHHHHHHHHHHHh
Q psy9749 67 MAAHRGDLPVEVITARPLEEADKSELQSTLKLFAK-KGENILLTTKVDPSI-IGGMIVSVGDKYVDMSVASKIKKYTDLL 144 (148)
Q Consensus 67 ~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~-~~~~i~l~~~vD~~l-igGi~i~vg~~~iD~Sv~~~L~~l~~~l 144 (148)
.....+.-.+.|+. +++..+.+++.+..... .|....+....||+| -||.+|+.++=.+|.+..+...++...+
T Consensus 121 l~~l~~~~~v~I~v----~P~d~~~l~~~l~~~~~~~~~~~~~~l~~D~~L~~G~c~vet~~G~vd~d~~~~~~~I~~al 196 (199)
T PRK06032 121 LRHLVATPHLVVRV----NDALVEAARERLERLARESGFEGRLVVLADPDMAPGDCRLEWADGGVVRDRAAIEARIEEAV 196 (199)
T ss_pred HHHhcCCCcEEEEE----CHHHHHHHHHHHHHHHHhcCcCccEEEeeCCCCCCCCeEEEeCCCeEecCHHHHHHHHHHHh
Confidence 33334433455553 34455556555544221 155678999999998 5899999999999999999999998887
Q ss_pred cC
Q psy9749 145 QT 146 (148)
Q Consensus 145 ~~ 146 (148)
.+
T Consensus 197 ~~ 198 (199)
T PRK06032 197 GR 198 (199)
T ss_pred hc
Confidence 64
No 35
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=90.60 E-value=6.2 Score=30.04 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=36.0
Q ss_pred CCHHHHHH-HHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE--CCEEeehhHHHHHHHHHHHhc
Q psy9749 84 LEEADKSE-LQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV--GDKYVDMSVASKIKKYTDLLQ 145 (148)
Q Consensus 84 L~~~~~~~-l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v--g~~~iD~Sv~~~L~~l~~~l~ 145 (148)
.+++..+. +...+.+.+. ...+.+... .|||+|+. |+..+|.|..+.++.+...+.
T Consensus 139 ~~~~~~~~~~~~~~~~~l~-~~gv~~~~~-----~gG~~v~~~dg~~~vd~t~d~i~~~~~~~l~ 197 (207)
T PRK01005 139 VSARAVNELLGKEVTKKLK-EKGVSVGSF-----VGGAQLKVEEKNWVLDLSSQTLLDLLTRYLQ 197 (207)
T ss_pred CCHHHHHHHHHHHHHHHHH-HcCeEEecc-----CCceEEEecCCeeEEeCcHHHHHHHHHHHhh
Confidence 35554444 3444344331 233444432 59999999 667799999999998887654
No 36
>PF07560 DUF1539: Domain of Unknown Function (DUF1539); InterPro: IPR011436 This domain is found in a small number of Chlamydia proteins of unknown function. It occurs together with IPR013044 from INTERPRO.
Probab=70.20 E-value=6.3 Score=27.73 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=22.7
Q ss_pred HHHHhhhCcCCCHHHHHHHHHHHhcC
Q psy9749 8 KFRDFVLDPTIQKSLKIEALKIVGQK 33 (148)
Q Consensus 8 ~l~~~l~~p~i~~~~K~~~l~~~~~~ 33 (148)
.+-.+|.||.+|.++|.+++..+...
T Consensus 71 ~l~~aL~dp~Is~erK~~~l~yIaSy 96 (126)
T PF07560_consen 71 QLIKALQDPTISKERKREALNYIASY 96 (126)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 46678999999999999999998764
No 37
>PRK07738 flagellar protein FlaG; Provisional
Probab=67.53 E-value=16 Score=25.40 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=34.2
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE
Q psy9749 82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV 124 (148)
Q Consensus 82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v 124 (148)
.++++++.++..+.+.+.+. ..+..+.|.+|++. |-++|+|
T Consensus 41 k~~s~eel~~aveklN~~l~-~~~~~L~F~vdeet-~~~vVkV 81 (117)
T PRK07738 41 YEVSKEDLEEVVDGMNELLE-PSQTSLKFELHEKL-NEYYVQV 81 (117)
T ss_pred ccCCHHHHHHHHHHHHHHHH-hcCCceEEEEecCC-CcEEEEE
Confidence 47888999999999988874 45678999999986 9999987
No 38
>PF14480 DNA_pol3_a_NI: DNA polymerase III polC-type N-terminus I
Probab=66.88 E-value=23 Score=21.85 Aligned_cols=43 Identities=9% Similarity=0.000 Sum_probs=33.0
Q ss_pred HhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeee
Q psy9749 69 AHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTK 111 (148)
Q Consensus 69 ~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~ 111 (148)
...+.-...+.+...|+.+....+.+.|++.|.+..++.+...
T Consensus 33 k~~~~w~f~l~~~~~l~~~~~~~~~~~l~~~F~~ia~v~~~i~ 75 (76)
T PF14480_consen 33 KKSRKWRFHLSSPHILPFEVYQKFEEKLKKQFSHIAKVELIIE 75 (76)
T ss_pred ccCCEEEEEEEeCCcCCHHHHHHHHHHHHHHhCCcCeEEEEEE
Confidence 3455567888999999999999999999999843345555543
No 39
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=66.14 E-value=44 Score=23.66 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCcc-ceeEEEECCEEeehh
Q psy9749 63 FSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSII-GGMIVSVGDKYVDMS 132 (148)
Q Consensus 63 ~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~li-gGi~i~vg~~~iD~S 132 (148)
..+......+...++|+. ++++...+.+.+..... ... +++.-||++. ||++|..++=.+|+|
T Consensus 103 v~~al~~~~~~~~v~I~v----~P~d~~~l~~~l~~~~~-~~~--~~i~~D~~l~~G~c~vet~~G~vdas 166 (166)
T TIGR02499 103 LRQLLRAVANQGRLTLRV----HPEQLDEVREALAERLA-LEP--WELEPDASLAPGACVLETESGVVDLS 166 (166)
T ss_pred HHHHHHhCCCCCceEEEE----CHHHHHHHHHHHHHHhc-cCC--eEEeeCCCCCCCCEEEEeCCceeeCC
Confidence 334444444444555553 56678888888887652 212 8889999864 779999999999987
No 40
>KOG1664|consensus
Probab=62.74 E-value=68 Score=24.59 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhcCCccEEEEeec---CCCHHHHHHHHHHHHHHhcCCCeEEEe----eeeCCCccceeEEEEC--C
Q psy9749 56 IDGVINNFSIIMAAHRGDLPVEVITAR---PLEEADKSELQSTLKLFAKKGENILLT----TKVDPSIIGGMIVSVG--D 126 (148)
Q Consensus 56 l~~i~~~~~~l~~~~~~~~~~~v~sa~---~L~~~~~~~l~~~l~~~~~~~~~i~l~----~~vD~~ligGi~i~vg--~ 126 (148)
...++..+.-.+-.....-.+.|++-. +|-+.............. |..+++. .-..|+..||+.+-.+ -
T Consensus 110 Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka--~~~~e~~id~~~fL~~~~~GGVvl~s~dgk 187 (220)
T KOG1664|consen 110 YKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIEEYKEKA--GVGVEVQIDKKDFLPPDVAGGVVLYSRDGK 187 (220)
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHh--cCCceeeechhccCCccccCCeEEEcCCCc
Confidence 444444444444455555556666532 222334444444444444 3332221 1234678999999884 4
Q ss_pred EEeehhHHHHHHHHHHHh
Q psy9749 127 KYVDMSVASKIKKYTDLL 144 (148)
Q Consensus 127 ~~iD~Sv~~~L~~l~~~l 144 (148)
..+|.|+.+||+-+.++.
T Consensus 188 I~v~NTLesRLeli~~q~ 205 (220)
T KOG1664|consen 188 IKVSNTLESRLELIAEQK 205 (220)
T ss_pred eEecCcHHHHHHHHHHHh
Confidence 578999999999877653
No 41
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=59.61 E-value=22 Score=23.73 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=28.9
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE
Q psy9749 82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV 124 (148)
Q Consensus 82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v 124 (148)
.+.+.++.++..+.|.+.+. ..+..+.|.+|++ .|.++|+|
T Consensus 32 ~~~~~e~l~~~v~~ln~~~~-~~~~~l~F~vde~-~~~~vVkV 72 (107)
T PF03646_consen 32 KEPSKEELEEAVEKLNEFLQ-ALNTSLRFSVDEE-SGRVVVKV 72 (107)
T ss_dssp ----HHHHHHHHHHHHHHHT-TSS--EEEEEEEE-TTEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHH-hcCCceEEEEecC-CCcEEEEE
Confidence 56788899999999988874 4577899999987 48888877
No 42
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=57.20 E-value=53 Score=21.56 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=40.3
Q ss_pred CccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE
Q psy9749 73 DLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV 124 (148)
Q Consensus 73 ~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v 124 (148)
...+.++....++=.+.+.+.+.+.+.+++.-.+.+=..+||++=+-++|.+
T Consensus 38 ~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~id~~l~d~i~Vti 89 (95)
T PF12327_consen 38 GVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGASIDEELEDEIRVTI 89 (95)
T ss_dssp EEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEEE-TTGTTEEEEEE
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEEECCCCCCeEEEEE
Confidence 3457778888899999999999999998656689999999999877777754
No 43
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=56.94 E-value=48 Score=21.02 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=31.3
Q ss_pred ecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEE
Q psy9749 81 ARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKY 128 (148)
Q Consensus 81 a~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~ 128 (148)
--.||+++.+.+...|...+..+..+.+++-- +|....+-|.+
T Consensus 20 kp~Lde~~leei~~~l~~a~~~~~~v~ity~~-----~g~~~~~~G~I 62 (92)
T PF08863_consen 20 KPELDEQQLEEINEKLSEAYQENQPVTITYYE-----DGYYQSVTGTI 62 (92)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCEEEEEEEE-----CCeeEEEEEEE
Confidence 34589999999999999877557788888776 44444444433
No 44
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=56.22 E-value=26 Score=26.17 Aligned_cols=84 Identities=10% Similarity=0.080 Sum_probs=48.4
Q ss_pred hHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCCH
Q psy9749 7 VKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 86 (148)
Q Consensus 7 ~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~ 86 (148)
..|+.++.||..+.+.|.+..+.+.. ..-.......++-|+..+-+ +++ ++.-..+.+.+.|.+.. |++
T Consensus 104 e~L~~ii~~~~~s~~~k~~A~~~~~~-l~~~~~kE~~iE~llkakGf---~da------vv~~~~~~v~VvV~~~~-L~~ 172 (196)
T PF12685_consen 104 ETLKEIINNENASEEEKKEAQDKLLE-LTEKMEKEMEIENLLKAKGF---EDA------VVFIEDDSVDVVVKADK-LSD 172 (196)
T ss_dssp HHHHHHHT-TTS-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTS----SEE------EEE-SSSEEEEEEE-S----H
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCC---Cce------EEEeeCCEEEEEEeCCC-CCH
Confidence 56889999999999999999998875 11123334444444443311 111 11122344445555555 999
Q ss_pred HHHHHHHHHHHHHhc
Q psy9749 87 ADKSELQSTLKLFAK 101 (148)
Q Consensus 87 ~~~~~l~~~l~~~~~ 101 (148)
.+..+|.+.+.+.++
T Consensus 173 ~~~~~I~diV~~~~~ 187 (196)
T PF12685_consen 173 AEAAQIIDIVMRETG 187 (196)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999883
No 45
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=54.01 E-value=38 Score=21.13 Aligned_cols=36 Identities=25% Similarity=0.517 Sum_probs=25.0
Q ss_pred CCeEEEeeeeCCCcccee-EEEE----CCEEeehhHHHHHHHH
Q psy9749 103 GENILLTTKVDPSIIGGM-IVSV----GDKYVDMSVASKIKKY 140 (148)
Q Consensus 103 ~~~i~l~~~vD~~ligGi-~i~v----g~~~iD~Sv~~~L~~l 140 (148)
+..+.+.+.+|++ |.+ .+++ |+..+|.++..-|++.
T Consensus 25 ~~~~~V~i~i~~d--G~v~~~~i~~sSG~~~~D~av~~ai~~~ 65 (85)
T PF13103_consen 25 GLSVTVRITIDPD--GRVISVRIVKSSGNPAFDAAVRRAIRRA 65 (85)
T ss_dssp T--EEEEEEE-TT--SBEEEEEEEE--S-HHHHHHHHHHHHHH
T ss_pred CcEEEEEEEECCC--CCEEEEEEecCCCCHHHHHHHHHHHHHc
Confidence 5689999999998 776 3333 8999999998888754
No 46
>PRK15379 pathogenicity island 1 effector protein SopD; Provisional
Probab=49.12 E-value=1.1e+02 Score=24.53 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=41.2
Q ss_pred CCHHHHHHH--HHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHH
Q psy9749 84 LEEADKSEL--QSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASK 136 (148)
Q Consensus 84 L~~~~~~~l--~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~ 136 (148)
.+.++..+| -+.|+....+.....++..+|++. --+-..+||++||-|=-.+
T Consensus 73 vn~~~m~KiyAF~qLk~LA~P~qQdlFTIalD~nQ-tq~lF~IG~~VI~qsni~~ 126 (317)
T PRK15379 73 VNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQ-TQFLLMVGDTVISQSNIKD 126 (317)
T ss_pred cChhhhHHHHHHHHHHHhcCcccCccEEEEEccch-heEEEEECCEEEeeccHHH
Confidence 456667777 567887776677889999999998 8899999999999774433
No 47
>COG2026 RelE Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]
Probab=47.24 E-value=61 Score=21.03 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHHhcCC-CeEEEeeeeCCCccceeEEEECCEEe
Q psy9749 84 LEEADKSELQSTLKLFAKKG-ENILLTTKVDPSIIGGMIVSVGDKYV 129 (148)
Q Consensus 84 L~~~~~~~l~~~l~~~~~~~-~~i~l~~~vD~~ligGi~i~vg~~~i 129 (148)
|++...+.+.+.+.+... . ..+......=...-|.+++++||+.+
T Consensus 18 L~~~~~~~~~~~l~~~~~-~~~p~~~~k~~~~~~~~~~R~RiG~YRl 63 (90)
T COG2026 18 LDKKIRKKIKDKLKELLE-NPPPIRHGKKLRKGLSGKYRLRIGDYRL 63 (90)
T ss_pred CCHHHHHHHHHHHHHhhc-cCCchhhceecccCCCCeEEEEecCEEE
Confidence 778888888888887652 2 12233344455566889999999765
No 48
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=45.66 E-value=1.2e+02 Score=28.78 Aligned_cols=78 Identities=9% Similarity=0.091 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCC-------------ccEEEEeecCCCHHHHHHHHHHHHHHhcCC
Q psy9749 37 SAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGD-------------LPVEVITARPLEEADKSELQSTLKLFAKKG 103 (148)
Q Consensus 37 ~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~-------------~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~ 103 (148)
++-+..|+.=|-+-..-..+.+..++.....+..... ..+++.|=.-=+++++++|..-|-+ .
T Consensus 160 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~st~hgcp~~eie~i~~~~~~----~ 235 (1019)
T PRK09853 160 SPKMQQFIDGMMDASDTPIFAECRETLNKLLDDFAFLAREGLERIPPSICPSVTLSTMHGCPPHEIEAIARYLLE----E 235 (1019)
T ss_pred chhHHHHHHHhhhcccChHHHHHHHHHHHHHHHHhhcchhhhhcCChhhcCceeehhccCCCHHHHHHHHHHHHh----c
Confidence 5667777777777666666666655555555444433 1467777777789999999998865 4
Q ss_pred CeEEEeeeeCCCccc
Q psy9749 104 ENILLTTKVDPSIIG 118 (148)
Q Consensus 104 ~~i~l~~~vD~~lig 118 (148)
+.+.--.+-||.|+|
T Consensus 236 k~~~~~~k~nptllg 250 (1019)
T PRK09853 236 KGLNTFVKLNPTLLG 250 (1019)
T ss_pred cCCceEEeeCccccc
Confidence 467788899999998
No 49
>TIGR01609 PF_unchar_267 Plasmodium falciparum uncharacterized protein TIGR01609. This model represents a family of at least four proteins in Plasmodium falciparum. An interesting feature is five perfectly conserved Trp residues.
Probab=45.48 E-value=36 Score=24.52 Aligned_cols=41 Identities=17% Similarity=-0.016 Sum_probs=34.2
Q ss_pred hHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy9749 7 VKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAE 49 (148)
Q Consensus 7 ~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~ 49 (148)
..+...|.+|..|...|..++...+. -....+.-||..+-+
T Consensus 102 ~~IN~~Lnd~~~sl~dKE~ii~~~l~--w~~~Df~~FL~~Vke 142 (146)
T TIGR01609 102 GHINSDLNDPSLTLVDKEYIVNIWIT--WTREDFEFFLEYLKE 142 (146)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 45678899999999999999999996 467778888887654
No 50
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=44.83 E-value=36 Score=24.65 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=38.8
Q ss_pred chHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q psy9749 6 DVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSI 65 (148)
Q Consensus 6 ~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~ 65 (148)
...+-.||.+|.++.+.|..+.++++.. .-+....+.++-++..+.++.+....-.+..
T Consensus 52 ~~q~~~fl~n~~is~~~k~~~AkRlL~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 110 (163)
T PF04918_consen 52 PLQAYNFLFNPKISDETKRYAAKRLLEL-PSDVTLKNLLKKIAKGKKLSSFDRWYLRLRY 110 (163)
T ss_dssp HHHHHHHHHH---SSHHHHHHHHHHHHH--TT-TTHHHHHHHHTT----HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcHHHHHHHHHHHhh-cccHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999999983 3456778888888888877766665444443
No 51
>PF12170 DNA_pol3_tau_5: DNA polymerase III tau subunit V interacting with alpha; InterPro: IPR021029 This domain family is found in bacteria, and is approximately 140 amino acids in length. The family is found in association with PF00004 from PFAM. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. The extreme C-terminal region of this domain 5 is the part which interacts with the alpha subunit of the DNA polymerase III holoenzyme [, ]. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 2AYA_A.
Probab=44.74 E-value=40 Score=24.02 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEeeeeC
Q psy9749 84 LEEADKSELQSTLKLFAKKGENILLTTKVD 113 (148)
Q Consensus 84 L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD 113 (148)
.++...++|.++|+..+ |..+++.+.++
T Consensus 66 ~~~~a~~~L~~ALs~~~--g~~i~L~I~~~ 93 (142)
T PF12170_consen 66 NNDSAQEQLQQALSEYL--GEPIKLSIEEG 93 (142)
T ss_dssp --HHHHHHHHHHHHHHH--SS--EEEEEE-
T ss_pred CCHHHHHHHHHHHHHHh--CCCEEEEEEEC
Confidence 35778999999999999 89999888765
No 52
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=44.67 E-value=1.7e+02 Score=23.94 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=42.3
Q ss_pred eecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCcc-----------ceeEEEECCEEeehhHHHHH
Q psy9749 80 TARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSII-----------GGMIVSVGDKYVDMSVASKI 137 (148)
Q Consensus 80 sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~li-----------gGi~i~vg~~~iD~Sv~~~L 137 (148)
|+.-|+++++.+|.+.+++.+ ....++....+|+.+ |--+|.+|=+..|-.+...+
T Consensus 66 TPs~L~~~~l~~ll~~i~~~~--~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l 132 (353)
T PRK05904 66 TPNCLNDQLLDILLSTIKPYV--DNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQL 132 (353)
T ss_pred ccccCCHHHHHHHHHHHHHhc--CCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc
Confidence 777899999999999999987 334577888899887 33377777777766655444
No 53
>PRK08868 flagellar protein FlaG; Provisional
Probab=44.32 E-value=53 Score=23.66 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=31.2
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE
Q psy9749 82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV 124 (148)
Q Consensus 82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v 124 (148)
.+++++++++..+.|.+... ..+..+.|.+|++ .|-++|+|
T Consensus 66 ~e~~~eel~~aVeklNe~~~-~~n~~L~F~vdee-tgr~VVkV 106 (144)
T PRK08868 66 QELNREELEKMVEQMNEFVK-SINKGLSFRVDEE-SGRDVVTI 106 (144)
T ss_pred cccCHHHHHHHHHHHHHHHH-hhcCceEEEEecC-CCCEEEEE
Confidence 45678888888888887764 4466788888887 57788877
No 54
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=43.77 E-value=1.3e+02 Score=25.31 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=47.0
Q ss_pred eecCCCHHHHHHHHHHHHHHhc-CCCeEEEeeeeCCCcc----------ce-eEEEECCEEeehhHHHHHHHHH
Q psy9749 80 TARPLEEADKSELQSTLKLFAK-KGENILLTTKVDPSII----------GG-MIVSVGDKYVDMSVASKIKKYT 141 (148)
Q Consensus 80 sa~~L~~~~~~~l~~~l~~~~~-~~~~i~l~~~vD~~li----------gG-i~i~vg~~~iD~Sv~~~L~~l~ 141 (148)
|..-|+++|.++|-+.|.+.++ .....+++.++||.-+ .| =+|.+|=+.+|..+...+.++.
T Consensus 97 TPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h 170 (416)
T COG0635 97 TPSLLSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIH 170 (416)
T ss_pred ccccCCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCC
Confidence 7788999999999999999983 2344889999999832 23 3677777777777776665543
No 55
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=43.55 E-value=54 Score=22.26 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=27.0
Q ss_pred cCCccEEEEeecCCCHHHHHHHHHHHHHHhc
Q psy9749 71 RGDLPVEVITARPLEEADKSELQSTLKLFAK 101 (148)
Q Consensus 71 ~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~ 101 (148)
++...+++++..++++.++++|.+.|++++.
T Consensus 37 r~gK~VTiI~Gld~~~~dlk~Lak~LKk~ca 67 (104)
T COG0023 37 RKGKTVTIIEGLDLKDIDLKKLAKELKKKCA 67 (104)
T ss_pred cCCcEEEEEeCcccchhhHHHHHHHHHHHcC
Confidence 3455688999999999999999999999984
No 56
>PF15603 Imm45: Immunity protein 45
Probab=43.31 E-value=48 Score=21.46 Aligned_cols=28 Identities=7% Similarity=0.293 Sum_probs=22.0
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEee
Q psy9749 82 RPLEEADKSELQSTLKLFAKKGENILLTT 110 (148)
Q Consensus 82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~ 110 (148)
.|++++++++|.+++.+.+. ++.+.+.+
T Consensus 54 ~~it~~e~q~II~aI~~~~~-~~~~~v~f 81 (82)
T PF15603_consen 54 EPITIAERQKIIEAIEKYFS-ERGMTVDF 81 (82)
T ss_pred cccCHHHHHHHHHHHHHHHh-cCceEEEe
Confidence 38999999999999999884 55555543
No 57
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=40.79 E-value=1.6e+02 Score=22.47 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=49.1
Q ss_pred hcCCccEEEEeecCCCHHHHHHHHHHHHHHhc-CCCeEEEeeeeCCCccce-eEEEECCEEeehhHHHHHHHHHHHhc
Q psy9749 70 HRGDLPVEVITARPLEEADKSELQSTLKLFAK-KGENILLTTKVDPSIIGG-MIVSVGDKYVDMSVASKIKKYTDLLQ 145 (148)
Q Consensus 70 ~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~-~~~~i~l~~~vD~~ligG-i~i~vg~~~iD~Sv~~~L~~l~~~l~ 145 (148)
..+...++|+. ++.+.+.+...+...-+ .|.. .+....||.|=+| -++...-=++|.|+..+|..|+..+.
T Consensus 127 ~~~~~~v~l~V----~P~~vd~l~~~la~~~~~~g~~-~i~I~aDp~La~~~Cvlese~G~VdagL~aQL~ALr~a~~ 199 (207)
T PF06635_consen 127 IRQGAEVTLRV----APADVDMLRRELAALEGRPGRP-KIRIVADPRLAAGQCVLESEFGVVDAGLDAQLRALRLAFG 199 (207)
T ss_pred HhcCCeEEEEE----CHHHHHHHHHHHHhhhccCCCC-ceeeecCCCCCCCCeeeecccchhhccHHHHHHHHHHHhc
Confidence 33333455553 34566666666644311 1433 7999999999766 67777778899999999999998764
No 58
>PRK06824 translation initiation factor Sui1; Validated
Probab=40.41 E-value=86 Score=21.76 Aligned_cols=30 Identities=43% Similarity=0.483 Sum_probs=27.4
Q ss_pred cCCccEEEEeecCCCHHHHHHHHHHHHHHh
Q psy9749 71 RGDLPVEVITARPLEEADKSELQSTLKLFA 100 (148)
Q Consensus 71 ~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~ 100 (148)
++...+++++-.++++.++++|...|++++
T Consensus 52 r~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~ 81 (118)
T PRK06824 52 RGGKTVTVITGVPLAEDALKELAKELKRRC 81 (118)
T ss_pred CCCceEEEEeCCcCCHHHHHHHHHHHHHHh
Confidence 456689999999999999999999999999
No 59
>TIGR02590 cas_Csh2 CRISPR-associated protein, Csh2 family. This model represents one of two closely related CRISPR-associated proteins that belong to the larger family of TIGR01595. Members are the Csh2 protein of the Hmari subtype of CRISPR/cas system. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats. The related model is TIGR02589, the Csd3 protein of the Dvulg CRISPR subtype.
Probab=40.25 E-value=1.4e+02 Score=23.98 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=46.5
Q ss_pred cCCCHHHHHHHHHHHHHHhc-------CC--C--eEEEeeeeCCCccceeE--EEEC------------CEEeehh-HHH
Q psy9749 82 RPLEEADKSELQSTLKLFAK-------KG--E--NILLTTKVDPSIIGGMI--VSVG------------DKYVDMS-VAS 135 (148)
Q Consensus 82 ~~L~~~~~~~l~~~l~~~~~-------~~--~--~i~l~~~vD~~ligGi~--i~vg------------~~~iD~S-v~~ 135 (148)
..+|+++.+.|.+.|-..+. .| . -+.+.+.-+...+|.+. |.+. +..+|.| +..
T Consensus 183 tg~teeD~e~lk~al~~~~~n~~T~SK~gq~~~l~l~V~y~e~~~~lG~L~~~i~l~~~~~~~~~r~~~~~~ld~~~L~~ 262 (286)
T TIGR02590 183 TGLTEEDVERLDTLCWRGIKNTISRSKVGQEPRLLCRVEYKEESFHLGELDYDVRVDEEAEDEELRDISDLALDIDDLVD 262 (286)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEecCCcCCCChhHcEEecccccccccccchheEEEHHHHHH
Confidence 45889999977777654332 12 1 25677777777899876 6653 6689988 999
Q ss_pred HHHHHHHHhcC
Q psy9749 136 KIKKYTDLLQT 146 (148)
Q Consensus 136 ~L~~l~~~l~~ 146 (148)
.|+..+..+..
T Consensus 263 ~l~~~~~~I~~ 273 (286)
T TIGR02590 263 RLDGAKAQIER 273 (286)
T ss_pred HHHHhhhhccE
Confidence 99998887764
No 60
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=39.33 E-value=1.6e+02 Score=27.92 Aligned_cols=78 Identities=9% Similarity=0.071 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCc-------------cEEEEeecCCCHHHHHHHHHHHHHHhcCC
Q psy9749 37 SAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDL-------------PVEVITARPLEEADKSELQSTLKLFAKKG 103 (148)
Q Consensus 37 ~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~-------------~~~v~sa~~L~~~~~~~l~~~l~~~~~~~ 103 (148)
+|-+..|+.=|-+-..-..+.+.-++....++...... .+++.|=.-=+++++++|..-|-+ .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~st~hgcp~~eie~i~~~~~~----~ 233 (1012)
T TIGR03315 158 SPKVDRYIEEMQDASGTPIFAECRATLKKYIDYFKKVDDEFIDAISPKVCHSVTLSTMHGCPPDEIEAICRYLLE----E 233 (1012)
T ss_pred cccHHHHHHHhhhcccChHHHHHHHHHHHHHHHhhhcCHhhhhcCChhhcCceeehhccCCCHHHHHHHHHHHHh----c
Confidence 66777888877777766666666655555555443332 366667677779999999998865 3
Q ss_pred CeEEEeeeeCCCccc
Q psy9749 104 ENILLTTKVDPSIIG 118 (148)
Q Consensus 104 ~~i~l~~~vD~~lig 118 (148)
+.+.--.+-||.|+|
T Consensus 234 k~~~~~~k~nptllg 248 (1012)
T TIGR03315 234 KGLHTFVKLNPTLLG 248 (1012)
T ss_pred cCCceEEeeCccccc
Confidence 467778899999998
No 61
>PRK09019 translation initiation factor Sui1; Validated
Probab=37.28 E-value=1.2e+02 Score=20.76 Aligned_cols=30 Identities=27% Similarity=0.238 Sum_probs=26.4
Q ss_pred CCccEEEEeecCCCHHHHHHHHHHHHHHhc
Q psy9749 72 GDLPVEVITARPLEEADKSELQSTLKLFAK 101 (148)
Q Consensus 72 ~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~ 101 (148)
+...+++++..++++.+++.|...|++.+.
T Consensus 43 kGK~VTiI~Gl~~~~~dlk~l~K~lKkk~g 72 (108)
T PRK09019 43 KGKGVCLITGLDLDDAELKKLAAELKKKCG 72 (108)
T ss_pred CCCeEEEEeCCcCCHHHHHHHHHHHHHHhc
Confidence 344789999999999999999999999993
No 62
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=36.48 E-value=1.8e+02 Score=22.42 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHc-------CC-----cccHHHHHHHHHHHHHHhcC-CccEEEEeecCCCHHHHHHHHHHHHHHhc
Q psy9749 35 NFSAASINLLALLAEN-------GK-----IKNIDGVINNFSIIMAAHRG-DLPVEVITARPLEEADKSELQSTLKLFAK 101 (148)
Q Consensus 35 ~~~~~~~nfl~~l~~~-------~r-----~~~l~~i~~~~~~l~~~~~~-~~~~~v~sa~~L~~~~~~~l~~~l~~~~~ 101 (148)
.+|+.+.++|+-|-+. .+ ...+..-+..+.+.+.+..+ ...++..-+. .+++..++. . ..++
T Consensus 11 sLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~-~~~~~~~~~---~-~~~G 85 (271)
T PF09822_consen 11 SLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPD-ENPSEAEEK---A-KEYG 85 (271)
T ss_pred cCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCC-CChHHHHHH---H-HhcC
Confidence 4677777777765321 11 23344445555555555555 5444444331 233333222 1 2221
Q ss_pred CCCeEEEeeeeC-----CCccceeEEEECCEEeehhHH
Q psy9749 102 KGENILLTTKVD-----PSIIGGMIVSVGDKYVDMSVA 134 (148)
Q Consensus 102 ~~~~i~l~~~vD-----~~ligGi~i~vg~~~iD~Sv~ 134 (148)
-..+.+...-+ ...-+|+.++.|++.--....
T Consensus 86 -i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~ 122 (271)
T PF09822_consen 86 -IQPVQIEIVDNGKASIVTVYGGIVVEYGDREEVIPFL 122 (271)
T ss_pred -CCccceeecccccccceeecCeEEEEECCeEEEeecc
Confidence 12222322221 256799999999887554443
No 63
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=36.20 E-value=57 Score=19.37 Aligned_cols=26 Identities=8% Similarity=0.181 Sum_probs=21.8
Q ss_pred hHHHHhhhCcCCCHHHHHHHHHHHhc
Q psy9749 7 VKFRDFVLDPTIQKSLKIEALKIVGQ 32 (148)
Q Consensus 7 ~~l~~~l~~p~i~~~~K~~~l~~~~~ 32 (148)
..|-++|..|.++.++|..+|+.+=.
T Consensus 11 nAFY~vl~~~nLteeQrn~yI~~lKd 36 (54)
T PF02216_consen 11 NAFYEVLHMPNLTEEQRNGYIQSLKD 36 (54)
T ss_dssp HHHHHHHCSTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHhHHHHHhh
Confidence 35778999999999999999999865
No 64
>PF09688 Wx5_PLAF3D7: Protein of unknown function (Wx5_PLAF3D7); InterPro: IPR006496 This entry represents a set of protein sequences found in Plasmodium species. An interesting feature is five perfectly conserved Trp residues.
Probab=35.32 E-value=65 Score=23.27 Aligned_cols=41 Identities=10% Similarity=-0.015 Sum_probs=33.7
Q ss_pred hHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy9749 7 VKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAE 49 (148)
Q Consensus 7 ~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~ 49 (148)
..+...|.+|..|...|..++...+. -+...+.-||..+-+
T Consensus 103 ~~In~~L~n~n~s~~~kE~ii~~~l~--w~~~DF~~FL~~vk~ 143 (147)
T PF09688_consen 103 NTINKKLNNPNYSLEDKEAIINFWLE--WAKEDFEVFLNIVKE 143 (147)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 35678899999999999999999996 467778888876643
No 65
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=34.53 E-value=82 Score=21.96 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE
Q psy9749 86 EADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV 124 (148)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v 124 (148)
.++++.+.+.+.+..+ .-+-.++|.+|.+ +|+++|.+
T Consensus 48 ~e~L~~~v~~ink~~k-~~nt~l~F~~dd~-lg~~vVkI 84 (120)
T COG1334 48 KEKLALIVEDINKLLK-SLNTHLNFSYDDE-LGELVVKI 84 (120)
T ss_pred HHHHHHHHHHHHHHHH-hhcCceEEEEecc-cCcEEEEE
Confidence 3456667777766653 2345677888876 79999987
No 66
>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) [].
Probab=34.35 E-value=1.3e+02 Score=22.85 Aligned_cols=60 Identities=25% Similarity=0.436 Sum_probs=38.0
Q ss_pred ccEEEEeecCCCHHH-HHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHH
Q psy9749 74 LPVEVITARPLEEAD-KSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTD 142 (148)
Q Consensus 74 ~~~~v~sa~~L~~~~-~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~ 142 (148)
..+++.|. ||...+ ...|.+.++..-. . ....+|.+ .|+.|.+|-...++|+. .|+++.+
T Consensus 76 ~~~ElvSP-~l~~~~~~~~i~~~~~~lr~---~--~~~~~~~s--cg~HVHv~~~~~~~~~~-~l~~l~~ 136 (252)
T PF12224_consen 76 VPVELVSP-PLPYDEELEEIDKVLEALRR---N--GAIGTNDS--CGFHVHVGPEPPSFSLE-TLKRLAK 136 (252)
T ss_pred eeEEEECC-CcCchhhHHHHHHHHHHHHH---c--CCccccCC--eeEEEEECCCCCCccHH-HHHHHHH
Confidence 46788887 666544 6666666655431 1 23344666 99999999888887744 3444443
No 67
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=34.03 E-value=20 Score=21.67 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHH
Q psy9749 57 DGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTL 96 (148)
Q Consensus 57 ~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l 96 (148)
++-+..+...+.+..|.....+.....+|++++++|++.+
T Consensus 28 ~e~l~~~l~~i~~~yGs~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 28 PEYLEAALDAIDERYGSVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHcCCCCHHHHHHHHHHc
Confidence 3344455555556666666777777778999999988764
No 68
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=33.57 E-value=1.7e+02 Score=22.51 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=51.2
Q ss_pred HHHHhhhCcCCCHHHHHHHHHHHhcCC-C-----CCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcC----CccEE
Q psy9749 8 KFRDFVLDPTIQKSLKIEALKIVGQKK-N-----FSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRG----DLPVE 77 (148)
Q Consensus 8 ~l~~~l~~p~i~~~~K~~~l~~~~~~~-~-----~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~----~~~~~ 77 (148)
.+.++|.+-..++++...++.+++... + ++|.+-.++.+.....+...+..|.+.|.+...++.. .-...
T Consensus 115 ~l~~mfrd~~Ls~~e~~~vv~Kv~~~l~~l~l~elPpLvyQLL~Lsskg~k~~vL~gl~~~F~~~~~~~~~~~~~~~~~d 194 (223)
T PF14675_consen 115 QLASMFRDVPLSKEELEFVVEKVLSMLKKLDLQELPPLVYQLLLLSSKGSKKLVLEGLIKYFNRLDKQKNESQSGSNSTD 194 (223)
T ss_dssp HHHHHGGGS---HHHHHHHHHHHHHHHTTS-GGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhcCChhhccHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhccCcccc
Confidence 567888888899999999999998632 2 2445555555555555667788888888887655432 21223
Q ss_pred EEeecCCCHHHHHHHHHHH
Q psy9749 78 VITARPLEEADKSELQSTL 96 (148)
Q Consensus 78 v~sa~~L~~~~~~~l~~~l 96 (148)
+-+....|+++....+..+
T Consensus 195 ~~~i~~~~~~elr~vEgTv 213 (223)
T PF14675_consen 195 LDSIDSVSDKELRQVEGTV 213 (223)
T ss_dssp -------SHHHHHHHHHHH
T ss_pred hhhhccCCHHHHHHHHhHH
Confidence 4444456677776666543
No 69
>TIGR02670 cas_csx8 CRISPR-associated protein Csx8 (provisional). In three genomes so far, a member of this protein appears in the midst of a CRISPR-associated (cas) gene operon, immediately upstream of a member of family TIGR01875 (CRISPR-associated autoregulator, DevR family). The genomes so far are Nocardia farcinica IFM10152, Clostridium perfringens SM101, and Clostridium tetani E88.
Probab=33.46 E-value=84 Score=26.68 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=50.8
Q ss_pred chHHHHhhhCcCCCHHHHH---------HHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcC
Q psy9749 6 DVKFRDFVLDPTIQKSLKI---------EALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRG 72 (148)
Q Consensus 6 ~~~l~~~l~~p~i~~~~K~---------~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~ 72 (148)
+..+...|..|..+.++.. .+++.+|++-+++.+-.--+--|++.+|..++.+-+..=..+++..-+
T Consensus 71 h~~~e~~l~~~e~s~e~i~~i~~~~~~nti~kkvf~k~kfdg~n~~eil~~i~~nr~~~i~etfr~kk~~y~n~~n 146 (441)
T TIGR02670 71 HKKVENILKHKEFTEEIIKSINEKLSANTVMKKVFGKIKFDGTNKDEILDLIDKNRHSLIKETFRRKKDLYDNYCN 146 (441)
T ss_pred HHHHHHHhcccccCHHHHHHHHHhhhhhHHHHHHHhccCCCCCCHHHHHHHHHhhHHHHHHHHHhhhhhHHHhccc
Confidence 4567888999999998875 467888876666666566666788999999999888877777765443
No 70
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=32.73 E-value=79 Score=17.22 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=18.4
Q ss_pred HHHHhhhCcCCCHHHHHHHHHHH
Q psy9749 8 KFRDFVLDPTIQKSLKIEALKIV 30 (148)
Q Consensus 8 ~l~~~l~~p~i~~~~K~~~l~~~ 30 (148)
.++..|.||.+|.+.|...-+.+
T Consensus 9 G~KAal~NPnvSeeaK~~A~~~L 31 (36)
T PF10346_consen 9 GYKAALHNPNVSEEAKQHAREKL 31 (36)
T ss_pred HHHHHhcCCCcCHHHHHHHHHHH
Confidence 46789999999999998765544
No 71
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=31.60 E-value=2.3e+02 Score=23.25 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHHHh--cCCccEEEE--eecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCcc-----------ce
Q psy9749 55 NIDGVINNFSIIMAAH--RGDLPVEVI--TARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSII-----------GG 119 (148)
Q Consensus 55 ~l~~i~~~~~~l~~~~--~~~~~~~v~--sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~li-----------gG 119 (148)
++..+.++........ .....+.+- |+.-|+.+++.+|.+.+.+.|+-....+++...+|+-+ |=
T Consensus 36 Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~Gv 115 (380)
T PRK09057 36 FAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGV 115 (380)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCC
Confidence 4444444443322221 223344443 88889999999999999998743344578888888543 22
Q ss_pred eEEEECCEEeehhHHHHH
Q psy9749 120 MIVSVGDKYVDMSVASKI 137 (148)
Q Consensus 120 i~i~vg~~~iD~Sv~~~L 137 (148)
=+|.+|=+..|-.+...+
T Consensus 116 nrislGvQS~~d~vL~~l 133 (380)
T PRK09057 116 NRVSLGVQALNDADLRFL 133 (380)
T ss_pred CEEEEecccCCHHHHHHc
Confidence 356666666666555444
No 72
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=31.08 E-value=94 Score=24.77 Aligned_cols=65 Identities=17% Similarity=0.122 Sum_probs=42.4
Q ss_pred hCcCCCHHHHHHHHHHHhcCCCCCHHH------HHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecC
Q psy9749 14 LDPTIQKSLKIEALKIVGQKKNFSAAS------INLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARP 83 (148)
Q Consensus 14 ~~p~i~~~~K~~~l~~~~~~~~~~~~~------~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~ 83 (148)
.||.+|.++|..++.+-+.+ ....+ ..-+.-+++..++...+.+.+-+..+. ..|+ ..-|.|+..
T Consensus 77 ~d~~~~~~eK~~~m~eWw~k--~~~l~~~~~~~~e~i~~~v~~~~l~l~pG~~efl~~L~--~~GI-pv~IvS~G~ 147 (277)
T TIGR01544 77 VDPVLTVEEKYPYMVEWWTK--SHGLLVQQAFPKAKIKEIVAESDVMLKDGYENFFDKLQ--QHSI-PVFIFSAGI 147 (277)
T ss_pred cCCCCChHHhhhHHHHHHHH--HHHHHhcCCCCHHHHHHHHhhcCCccCcCHHHHHHHHH--HCCC-cEEEEeCCc
Confidence 58999999999999987752 23333 333666677677777777766666653 3344 455555544
No 73
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=30.55 E-value=2.9e+02 Score=22.80 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHHHHhcC--CccEEEE--eecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccc----------e-
Q psy9749 55 NIDGVINNFSIIMAAHRG--DLPVEVI--TARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG----------G- 119 (148)
Q Consensus 55 ~l~~i~~~~~~l~~~~~~--~~~~~v~--sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~lig----------G- 119 (148)
++..+.++.........+ ...+.+- |+.-|+.+++.+|.+.+.+.++-....+++...+|.-+. |
T Consensus 54 Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~Gv 133 (394)
T PRK08898 54 YLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGV 133 (394)
T ss_pred HHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCC
Confidence 555555555433222212 2223332 788899999999999999988322335788888887552 2
Q ss_pred eEEEECCEEeehhHHH
Q psy9749 120 MIVSVGDKYVDMSVAS 135 (148)
Q Consensus 120 i~i~vg~~~iD~Sv~~ 135 (148)
=+|.+|=+..|-.+..
T Consensus 134 nrisiGvQS~~~~~L~ 149 (394)
T PRK08898 134 NRLSIGIQSFNDAHLK 149 (394)
T ss_pred CeEEEecccCCHHHHH
Confidence 2355555555544443
No 74
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=30.53 E-value=87 Score=20.78 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCeEEEeee
Q psy9749 83 PLEEADKSELQSTLKLFAKKGENILLTTK 111 (148)
Q Consensus 83 ~L~~~~~~~l~~~l~~~~~~~~~i~l~~~ 111 (148)
|=|.+..+.|+++|+++| ++..+.+++.
T Consensus 16 PsSkeTyeWL~aal~RKy-p~~~f~~~Yi 43 (93)
T PF07315_consen 16 PSSKETYEWLEAALKRKY-PDQPFEFTYI 43 (93)
T ss_dssp --HHHHHHHHHHHHHHH--TTS-EEEEEE
T ss_pred CCchhHHHHHHHHHhCcC-CCCceEEEEE
Confidence 445889999999999999 4777887763
No 75
>cd07749 NT_Pol-beta-like_1 Nucleotidyltransferase (NT) domain of an uncharacterized subgroup of the Pol beta-like NT superfamily. The Pol beta-like NT superfamily includes DNA polymerase beta and other family X DNA Polymerases, as well as Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly(A) polymerases, terminal uridylyl transferases, Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. Proteins belonging to this subgroup are uncharacterized. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations essential for catalysis. These divalent metal ions are involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.
Probab=30.35 E-value=46 Score=24.30 Aligned_cols=47 Identities=13% Similarity=0.319 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHhcCCCeEEE-----------eee---eCCCccceeEEEECCEEeehhH
Q psy9749 85 EEADKSELQSTLKLFAKKGENILL-----------TTK---VDPSIIGGMIVSVGDKYVDMSV 133 (148)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~i~l-----------~~~---vD~~ligGi~i~vg~~~iD~Sv 133 (148)
+.+..+++...|++.. .+++.. ++. ++=+++|||.++..+-+++..+
T Consensus 45 D~~d~e~i~~il~~~~--~~~~~~~~~~~~ts~F~e~~I~gv~Vdvmgg~~i~~~~g~~~~~~ 105 (156)
T cd07749 45 DNEGAYEIERIFHEFV--NTEVRFSESEGIRSHFGELQIDGIKVEIMGDVQKRLEDGWWETPV 105 (156)
T ss_pred chhhHHHHHHHHHHhc--cCCCccCCCCceeeeeeEEEECCEEEEEeeceEEecCCCEEeccc
Confidence 3566777777777653 222221 122 4456999999999988888877
No 76
>PF11748 DUF3306: Protein of unknown function (DUF3306); InterPro: IPR021735 This family of proteobacterial species proteins has no known function.
Probab=30.17 E-value=81 Score=21.63 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=25.8
Q ss_pred cccchHHHHhhhCcCCCHHHHHHHHHHHhcC
Q psy9749 3 LKTDVKFRDFVLDPTIQKSLKIEALKIVGQK 33 (148)
Q Consensus 3 ~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~ 33 (148)
+....+|..||.. .++.+-|...|+++|..
T Consensus 63 l~~~~d~~~Fl~~-~V~~~lk~aALRkLf~~ 92 (115)
T PF11748_consen 63 LTAESDFAAFLAS-GVPEELKRAALRKLFSD 92 (115)
T ss_pred ccccccHHHHHHc-CCCHHHHHHHHHHHHcC
Confidence 3567789999988 88999999999999963
No 77
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=29.32 E-value=3.3e+02 Score=22.79 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHHHHhcCCccEEEE----eecCCCHHHHHHHHHHHHHHhcCCC-eEEEeeeeCCCcc
Q psy9749 55 NIDGVINNFSIIMAAHRGDLPVEVI----TARPLEEADKSELQSTLKLFAKKGE-NILLTTKVDPSII 117 (148)
Q Consensus 55 ~l~~i~~~~~~l~~~~~~~~~~~v~----sa~~L~~~~~~~l~~~l~~~~~~~~-~i~l~~~vD~~li 117 (148)
++..+.++.....+...+.....|+ |+.-|+.+++.+|.+.+.+.++-.. .+.+....+|..+
T Consensus 72 y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~l 139 (430)
T PRK08208 72 YLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATT 139 (430)
T ss_pred HHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcC
Confidence 4455555554433332222223443 5666899999999999988762111 3466777777544
No 78
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=28.29 E-value=1.8e+02 Score=19.31 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=36.6
Q ss_pred chHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy9749 6 DVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLA 48 (148)
Q Consensus 6 ~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~ 48 (148)
-.+|..++.||..+..++..-+.....+.++......|..-+.
T Consensus 4 ~~ef~~I~~n~~lt~~e~~~~l~~Wa~~~~v~~~~~~f~~~~~ 46 (113)
T PF02520_consen 4 RKEFFQIFQNPNLTKAEIEEQLDEWAEKYGVQDQYNEFKAQVQ 46 (113)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence 3678999999999999999999999987678888888887554
No 79
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=28.24 E-value=3.1e+02 Score=21.82 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=39.5
Q ss_pred ccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEE
Q psy9749 74 LPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVS 123 (148)
Q Consensus 74 ~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~ 123 (148)
..+.++....++-++.+++.+.+++.+++..++.+=..+||++=+-++|.
T Consensus 250 ~Lv~I~~~~~l~l~e~~~~~~~i~~~~~~~~~ii~G~~~d~~l~~~v~Vt 299 (304)
T cd02201 250 VLVNITGGSDLTLEEVNEAAEIIKEKVDPDANIIFGATIDESLEDEIRVT 299 (304)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeeeCCCCCCeEEEE
Confidence 34667777789999999999999999854468888889999875555554
No 80
>PRK08452 flagellar protein FlaG; Provisional
Probab=27.88 E-value=1.2e+02 Score=21.22 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE
Q psy9749 85 EEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV 124 (148)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v 124 (148)
.+++.+.+.+.|.+.+. .....+.|.+|++ +|.++|+|
T Consensus 51 ~~e~l~~~ve~lN~~~~-~~~~~L~F~~de~-~~~~vVkV 88 (124)
T PRK08452 51 LKKKLEELTEKLNEEMK-RLDTNIRFGYNDK-IKGLVVSV 88 (124)
T ss_pred HHHHHHHHHHHHHHHHH-hhCCceEEEEcCC-CCcEEEEE
Confidence 34566666666666653 3456788888887 57788887
No 81
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=27.40 E-value=1.8e+02 Score=19.38 Aligned_cols=30 Identities=30% Similarity=0.295 Sum_probs=27.0
Q ss_pred cCCccEEEEeecCCCHHHHHHHHHHHHHHh
Q psy9749 71 RGDLPVEVITARPLEEADKSELQSTLKLFA 100 (148)
Q Consensus 71 ~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~ 100 (148)
++...+++++..++.+.+.+.+...|++.+
T Consensus 35 r~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~ 64 (101)
T TIGR01158 35 RKGKGVTIIEGLDLSDIDLKELAKELKSKC 64 (101)
T ss_pred CCCCEEEEEeCCcCchhhHHHHHHHHHHHh
Confidence 456789999999999999999999999998
No 82
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=27.30 E-value=1.8e+02 Score=19.44 Aligned_cols=31 Identities=26% Similarity=0.187 Sum_probs=27.6
Q ss_pred cCCccEEEEeecCCCHHHHHHHHHHHHHHhc
Q psy9749 71 RGDLPVEVITARPLEEADKSELQSTLKLFAK 101 (148)
Q Consensus 71 ~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~ 101 (148)
++...+++++..+..+.+.+.+...|++.++
T Consensus 34 ~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~g 64 (99)
T PRK00939 34 RYGKEVTIIEGIDPKDIDLKELAKKLKSKLA 64 (99)
T ss_pred CCCceEEEEeCCCCcchhHHHHHHHHHHHhC
Confidence 5566899999999999999999999999993
No 83
>PF06918 DUF1280: Protein of unknown function (DUF1280); InterPro: IPR009689 This family represents a conserved region approximately 200 residues long within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans.
Probab=27.09 E-value=1e+02 Score=23.74 Aligned_cols=107 Identities=11% Similarity=0.123 Sum_probs=62.5
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhc---
Q psy9749 25 EALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAK--- 101 (148)
Q Consensus 25 ~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~--- 101 (148)
+.++.+.+..+.+..+..|++.+.+.+..+.-- -..... ...+++...||+.+...+++.+++..+
T Consensus 17 ~~iq~ivg~~d~~~Fl~df~k~l~k~~~~sfk~--------~LS~~e---tf~~k~k~~LSd~~lk~~K~~~k~~lg~Dv 85 (224)
T PF06918_consen 17 KAIQQIVGEEDVDQFLRDFIKFLDKSGEFSFKF--------KLSPEE---TFILKVKFNLSDGFLKKFKKFLKEFLGFDV 85 (224)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHhccCccccccc--------cCChhh---eEEEEEEecCCHHHHHHHHHHHHHhCCCCC
Confidence 344454444556778888888888887653221 111111 356888899999999999999888652
Q ss_pred ---------------CCCeEEEeeeeCC-CccceeEEEECCEE-----eehhHHHHHHHHHH
Q psy9749 102 ---------------KGENILLTTKVDP-SIIGGMIVSVGDKY-----VDMSVASKIKKYTD 142 (148)
Q Consensus 102 ---------------~~~~i~l~~~vD~-~ligGi~i~vg~~~-----iD~Sv~~~L~~l~~ 142 (148)
+-....+....-. .-.+|=.+.+-..+ +...+..||++|.+
T Consensus 86 f~Sr~~i~~l~k~~s~~~~y~i~~~~~~k~~~~g~~v~v~~~~v~~~dv~~~l~~rle~l~~ 147 (224)
T PF06918_consen 86 FPSRKSIDELEKKVSSIDDYEISTEKITKKTGSGKEVTVVTCVVSIKDVEKLLSRRLEQLSK 147 (224)
T ss_pred CCCHHHHHHHHHhcCcccceEEEEEEccccCCCCeEEEEEEEEEEecCHHHHHHHHHHHHHH
Confidence 0012223322222 23456555554333 55667777777763
No 84
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=26.44 E-value=3.5e+02 Score=21.89 Aligned_cols=78 Identities=10% Similarity=0.090 Sum_probs=46.1
Q ss_pred cHHHHHHHHHHHHHHh--cCCccEEEE--eecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCcc-----------ce
Q psy9749 55 NIDGVINNFSIIMAAH--RGDLPVEVI--TARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSII-----------GG 119 (148)
Q Consensus 55 ~l~~i~~~~~~l~~~~--~~~~~~~v~--sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~li-----------gG 119 (148)
++..+.++........ .+...+.+. |+.-|+.++..+|.+.+.+.+ ....+++...+|..+ |=
T Consensus 32 y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~--~~~~eitiE~nP~~~~~e~l~~l~~~Gv 109 (350)
T PRK08446 32 YMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSAKFYEPIFEIISPYL--SKDCEITTEANPNSATKAWLKGMKNLGV 109 (350)
T ss_pred HHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHhc--CCCceEEEEeCCCCCCHHHHHHHHHcCC
Confidence 4555555544332211 233334443 666699999999999998875 445677788888743 22
Q ss_pred eEEEECCEEeehhHH
Q psy9749 120 MIVSVGDKYVDMSVA 134 (148)
Q Consensus 120 i~i~vg~~~iD~Sv~ 134 (148)
=+|.+|=+.+|-.+.
T Consensus 110 nRiSiGvQS~~~~~L 124 (350)
T PRK08446 110 NRISFGVQSFNEDKL 124 (350)
T ss_pred CEEEEecccCCHHHH
Confidence 355555555554443
No 85
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.37 E-value=1.8e+02 Score=26.02 Aligned_cols=73 Identities=15% Similarity=0.127 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCC
Q psy9749 40 SINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDP 114 (148)
Q Consensus 40 ~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~ 114 (148)
....+.-|++.-.+.-+..-+...-.+.....+.....+....=+++..+++|++.|++.| |+.+++...+.+
T Consensus 497 W~~~v~qL~~~~~l~gl~~~LA~nsel~~~~~~~~~L~~~~~~L~~~~~~~rL~~AL~~~~--G~~~~l~i~ig~ 569 (618)
T PRK14951 497 WHATVQQLAAAEAITALARELALQSELVARDGDQWLLRVERESLNQPGARERLRAALEAAL--GHAVRLEVEVGA 569 (618)
T ss_pred hHHHHHHHHhcccccHHHHHHHhcccccccCCCeEEecccchhhcChHHHHHHHHHHHHHh--CCCeeEEEEecC
Confidence 4455555655544444444433334444443332222111222334777999999999999 899888777653
No 86
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=25.97 E-value=1.7e+02 Score=18.02 Aligned_cols=51 Identities=6% Similarity=0.115 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHh
Q psy9749 35 NFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFA 100 (148)
Q Consensus 35 ~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~ 100 (148)
.+++....|+.-.++.||..-..+++.+-.++..+.. .+.+.|+..+..-.
T Consensus 5 sL~~~~~~~i~~~V~sG~Y~s~SEVir~aLR~le~~e---------------~~~~~Lr~~i~~g~ 55 (69)
T TIGR02606 5 SLGEHLESFIRSQVQSGRYGSASEVVRAALRLLEERE---------------TKLQALRDAIEEGE 55 (69)
T ss_pred ecCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999888765 24667777776544
No 87
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=25.73 E-value=32 Score=24.87 Aligned_cols=91 Identities=10% Similarity=0.015 Sum_probs=42.1
Q ss_pred hHHHHhhhCcCCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCC
Q psy9749 7 VKFRDFVLDPTIQKSLKIEALKIVGQK--KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPL 84 (148)
Q Consensus 7 ~~l~~~l~~p~i~~~~K~~~l~~~~~~--~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L 84 (148)
.++...|..-.=+...|..-+...+.. .+++|+..-|+.-+++..|- ........-............-.+.+-..|
T Consensus 43 de~i~~LK~ksP~L~~k~~~l~~~~k~ki~~L~peak~Fv~~li~~~~~-l~~~~~~G~~~~~~~lk~~~k~~~~~ykaL 121 (154)
T PF05823_consen 43 DEMIAALKEKSPSLYEKAEKLRDKLKKKIDKLSPEAKAFVKELIAKARS-LYAQYSAGEKPDLEELKQLAKKVIDSYKAL 121 (154)
T ss_dssp TTHHHHHHHH-HHHHHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHHH-HHHHHHHT----THHHHHHH----HHHHTS
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HHHHhcCCCCCCHHHHHHHHhhhHHHHHcC
Confidence 334444443222344444444444431 36799999999988876552 222222111111122222334556677789
Q ss_pred CHHHHHHHHHHHHH
Q psy9749 85 EEADKSELQSTLKL 98 (148)
Q Consensus 85 ~~~~~~~l~~~l~~ 98 (148)
+++.++.|+...-.
T Consensus 122 s~~ak~dL~k~FP~ 135 (154)
T PF05823_consen 122 SPEAKDDLKKNFPI 135 (154)
T ss_dssp -HHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHCcc
Confidence 99988888777543
No 88
>PRK05660 HemN family oxidoreductase; Provisional
Probab=25.66 E-value=3.8e+02 Score=22.00 Aligned_cols=65 Identities=11% Similarity=0.105 Sum_probs=43.8
Q ss_pred CccEEEE--eecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCcc-----------ceeEEEECCEEeehhHHHHH
Q psy9749 73 DLPVEVI--TARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSII-----------GGMIVSVGDKYVDMSVASKI 137 (148)
Q Consensus 73 ~~~~~v~--sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~li-----------gGi~i~vg~~~iD~Sv~~~L 137 (148)
...+.+. |+.-|+.+++.+|.+.+++.++.....+++...+|..+ |=-+|.+|=+..|-.+...+
T Consensus 59 v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l 136 (378)
T PRK05660 59 VHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRL 136 (378)
T ss_pred eeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHh
Confidence 3344444 77778899999999999998742344677888888765 33466666666665554433
No 89
>PF05291 Bystin: Bystin; InterPro: IPR007955 Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation. Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy []. This family also includes the Saccharomyces cerevisiae protein ENP1. ENP1 is an essential protein in S. cerevisiae and is localised in the nucleus []. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective S. cerevisiae cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits [].
Probab=25.37 E-value=3.6e+02 Score=21.87 Aligned_cols=90 Identities=21% Similarity=0.234 Sum_probs=58.5
Q ss_pred HHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCc---ccHHHHHHHHHHHHHHhcCCccEE--------
Q psy9749 9 FRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKI---KNIDGVINNFSIIMAAHRGDLPVE-------- 77 (148)
Q Consensus 9 l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~---~~l~~i~~~~~~l~~~~~~~~~~~-------- 77 (148)
+.++++--.+|.-.-...+..+++ ...+..+.-||++|++++-. ..+.+++..|.+-.+.... ..+.
T Consensus 174 i~svl~k~sipvlhsaaaL~kl~~-~~~~g~~s~flr~ll~KKYaLP~rviDalv~hFlrf~~~~~~-lPVlWHq~lL~F 251 (301)
T PF05291_consen 174 IGSVLAKVSIPVLHSAAALLKLAE-MEYSGANSIFLRVLLDKKYALPYRVIDALVFHFLRFRNDKRK-LPVLWHQSLLVF 251 (301)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHc-CCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHHhcccCCc-ccHHHHHHHHHH
Confidence 345556566777777778888886 57788888899999988742 2455556666654443211 0000
Q ss_pred E-EeecCCCHHHHHHHHHHHHHHh
Q psy9749 78 V-ITARPLEEADKSELQSTLKLFA 100 (148)
Q Consensus 78 v-~sa~~L~~~~~~~l~~~l~~~~ 100 (148)
+ .....++++|++.|.+.+....
T Consensus 252 ~qrYk~di~~eqk~~L~~ll~~~~ 275 (301)
T PF05291_consen 252 VQRYKNDITEEQKEALLELLRKQK 275 (301)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhCC
Confidence 0 1334689999999999998753
No 90
>PF07252 DUF1433: Protein of unknown function (DUF1433); InterPro: IPR009881 This family contains a number of hypothetical bacterial proteins of unknown function approximately 100 residues in length.; PDB: 2K3D_A.
Probab=24.54 E-value=1.3e+02 Score=19.71 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE
Q psy9749 86 EADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV 124 (148)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v 124 (148)
++|.+||..-++--++.-+.+.++ .+..+=+||+.|.-
T Consensus 3 ~~qk~RIely~kyN~k~~k~i~ft-~~~~~PMG~~~I~G 40 (88)
T PF07252_consen 3 KEQKERIELYFKYNYKNIKSITFT-KFKKNPMGGYFIKG 40 (88)
T ss_dssp HHHHHHHHHHHHHH-TT---EEE----EEETTEE-EEEE
T ss_pred HHHHHHHHHHHHhhhcccceEEEE-EEEECCCCCeEEEE
Confidence 578899999998766444667775 34555589988764
No 91
>PRK07451 translation initiation factor Sui1; Validated
Probab=24.34 E-value=1.9e+02 Score=19.96 Aligned_cols=29 Identities=24% Similarity=0.147 Sum_probs=25.8
Q ss_pred CCccEEEEeecCCCHHHHHHHHHHHHHHh
Q psy9749 72 GDLPVEVITARPLEEADKSELQSTLKLFA 100 (148)
Q Consensus 72 ~~~~~~v~sa~~L~~~~~~~l~~~l~~~~ 100 (148)
+...+++++..++.+.++++|...|++.+
T Consensus 50 ~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~ 78 (115)
T PRK07451 50 KGKTVTVITGFQHKPETLAKLLKQLKTQC 78 (115)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 34578999999999999999999999998
No 92
>PHA01351 putative minor structural protein
Probab=23.17 E-value=1.8e+02 Score=26.81 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=39.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHhc
Q psy9749 24 IEALKIVGQKKNFSAASINLLALLAENGKIK-NIDGVINNFSIIMAAHR 71 (148)
Q Consensus 24 ~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~-~l~~i~~~~~~l~~~~~ 71 (148)
.+++.++|..-+++....|.-.-.++|+|++ ++.+|+..-.-+.+++.
T Consensus 986 ~q~lqkvfaeyqvp~dlq~~y~eyarnrrl~~yiseii~tinllfer~k 1034 (1070)
T PHA01351 986 QQLLQKVFAEFQIPQELQNTYFEYARNRRVSRYVNEIITTINLLFEKHK 1034 (1070)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 3788999986788999999999999999987 78888887777776554
No 93
>PRK09330 cell division protein FtsZ; Validated
Probab=23.04 E-value=4.2e+02 Score=22.18 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=40.4
Q ss_pred cEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE
Q psy9749 75 PVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV 124 (148)
Q Consensus 75 ~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v 124 (148)
.+.++....|+-++...+.+.+++.+++..+|.+=..+||++-+-++|.+
T Consensus 264 Lv~I~g~~~l~l~e~~~~~~~i~~~~~~~a~Ii~G~~~d~~l~~~i~Vtv 313 (384)
T PRK09330 264 LVNITGGPDLTLFEVEEAAEIIREAADPDANIIFGTVIDEELGDEIRVTV 313 (384)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeeeCCCcCCeEEEEE
Confidence 46677777899999999999999998545688899999999866666554
No 94
>PF14832 Tautomerase_3: Putative oxalocrotonate tautomerase enzyme; PDB: 3C6V_C 3N4D_I 3N4G_C 3N4H_A 2FLZ_C 3MF8_A 3MF7_A 2FLT_A.
Probab=22.77 E-value=1.5e+02 Score=20.92 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=19.1
Q ss_pred EEEeec-CCCHHHHHHHHHHHHHHh
Q psy9749 77 EVITAR-PLEEADKSELQSTLKLFA 100 (148)
Q Consensus 77 ~v~sa~-~L~~~~~~~l~~~l~~~~ 100 (148)
.|+.+. +||++|++.|.+.+.+.+
T Consensus 5 ~I~h~~~~lt~~~K~~LA~~IT~~y 29 (136)
T PF14832_consen 5 QIYHPPGTLTPEQKQALAEAITDIY 29 (136)
T ss_dssp EEEEETTSS-HHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 466666 999999999999998865
No 95
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.60 E-value=2.9e+02 Score=23.94 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=29.9
Q ss_pred CCccEEEEeecC--CCHHHHHHHHHHHHHHhcCCCeEEEeeeeCC
Q psy9749 72 GDLPVEVITARP--LEEADKSELQSTLKLFAKKGENILLTTKVDP 114 (148)
Q Consensus 72 ~~~~~~v~sa~~--L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~ 114 (148)
+.....|.++.. .++...++|+++|++.| |+.+++...+++
T Consensus 413 ~~i~L~L~~~~~~L~~~~~~~~L~~ALs~~~--G~~i~L~I~~g~ 455 (509)
T PRK14958 413 NRLYLMLNPKQKPLLQQKHIERISEALSEHF--NRTITVKIDISN 455 (509)
T ss_pred CEEEEEEChhhhhhcCHHHHHHHHHHHHHHh--CCCeEEEEEeCC
Confidence 333444444443 36888999999999999 899998887664
No 96
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.56 E-value=1.4e+02 Score=25.88 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEeeeeCC
Q psy9749 84 LEEADKSELQSTLKLFAKKGENILLTTKVDP 114 (148)
Q Consensus 84 L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~ 114 (148)
.++...++|.+.|++.| |+.+++...++.
T Consensus 448 ~~~~~~~~L~~ALs~~~--G~~~~l~I~~g~ 476 (527)
T PRK14969 448 LDKPYQDKLQAALEQHF--GRPVQLIFSLGG 476 (527)
T ss_pred cCHHHHHHHHHHHHHHh--CCCeEEEEEeCC
Confidence 46888999999999999 899988887665
No 97
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=22.44 E-value=2e+02 Score=17.65 Aligned_cols=42 Identities=12% Similarity=0.294 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeee-----eCCCccceeEEEECCEEee
Q psy9749 88 DKSELQSTLKLFAKKGENILLTTK-----VDPSIIGGMIVSVGDKYVD 130 (148)
Q Consensus 88 ~~~~l~~~l~~~~~~~~~i~l~~~-----vD~~ligGi~i~vg~~~iD 130 (148)
++++|.+.+.+.|..--+|.+-+. -.+.+.||+++. +|+.+.
T Consensus 3 kre~i~~~iR~~fs~lG~I~vLYvn~~eS~~~~~~GGvV~e-DgR~y~ 49 (62)
T PF15513_consen 3 KREEITAEIRQFFSQLGEIAVLYVNPYESDEDRLTGGVVME-DGRHYT 49 (62)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEEcccccCCCeEeccEEEe-CCCEEE
Confidence 455566666655522224555443 456789999876 344443
No 98
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=22.30 E-value=92 Score=21.83 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=20.8
Q ss_pred HHHhhhCcCC---CHHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q psy9749 9 FRDFVLDPTI---QKSLKIEALKIVGQKKNFS-AASINLLALL 47 (148)
Q Consensus 9 l~~~l~~p~i---~~~~K~~~l~~~~~~~~~~-~~~~nfl~~l 47 (148)
-+.||.||.| +.++|.+||+. + +++ .++...++..
T Consensus 9 A~~FL~~p~V~~sp~~~k~~FL~s---K-GLt~~EI~~al~~a 47 (136)
T PF04695_consen 9 AVKFLQDPKVRNSPLEKKIAFLES---K-GLTEEEIDEALGRA 47 (136)
T ss_dssp HHHHHCTTTCCCS-HHHHHHHHHH---C-T--HHHHHHHHHHH
T ss_pred HHHHhCCcccccCCHHHHHHHHHc---C-CCCHHHHHHHHHhc
Confidence 4688999876 57788888774 2 454 4455444443
No 99
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=21.55 E-value=1.7e+02 Score=18.01 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEee
Q psy9749 87 ADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVD 130 (148)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD 130 (148)
.....+.+.|...|+ +.-..++. .|.--|=|.|.++|..+=
T Consensus 15 ~~a~~l~~~l~~~fp-~~~~~v~~--~~~~~G~FEV~v~g~lI~ 55 (76)
T PF10262_consen 15 PRALELAQELLQTFP-DRIAEVEL--SPGSTGAFEVTVNGELIF 55 (76)
T ss_dssp HHHHHHHHHHHHHST-TTCSEEEE--EEESTT-EEEEETTEEEE
T ss_pred HHHHHHHHHHHHHCC-CcceEEEE--EeccCCEEEEEEccEEEE
Confidence 456788889999883 42223333 344468999999887653
No 100
>PF04591 DUF596: Protein of unknown function, DUF596; InterPro: IPR007670 This family contains several uncharacterised proteins.; PDB: 2O5H_B.
Probab=21.43 E-value=2.2e+02 Score=17.87 Aligned_cols=27 Identities=4% Similarity=0.308 Sum_probs=20.1
Q ss_pred ceeEEEECCEEeehhHHHHHHHHHHHh
Q psy9749 118 GGMIVSVGDKYVDMSVASKIKKYTDLL 144 (148)
Q Consensus 118 gGi~i~vg~~~iD~Sv~~~L~~l~~~l 144 (148)
|=+++--++..+++|+..+++.+++..
T Consensus 4 G~lKLa~~g~fl~Gt~eEqve~fr~~f 30 (70)
T PF04591_consen 4 GKLKLARKGEFLEGTTEEQVEMFRKSF 30 (70)
T ss_dssp TSEEEEETTEEE---HHHHHHHHHHH-
T ss_pred ceEEeccCCEEecCCHHHHHHHHHHHC
Confidence 557888899999999999999998764
No 101
>KOG3311|consensus
Probab=20.95 E-value=88 Score=22.72 Aligned_cols=85 Identities=14% Similarity=0.093 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHH
Q psy9749 56 IDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVAS 135 (148)
Q Consensus 56 l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~ 135 (148)
+.-|-..|.+.+-+..+. =...=+.+++++|...+.+.++.-- ..+...+.-.++...+-|..-+.-...+|.=++.
T Consensus 33 i~Gig~~~A~~ic~K~~~--~~~~r~gelt~~qi~~i~~i~~d~~-~~~~~~~~l~rq~~~~dG~~~~l~~~~ld~r~r~ 109 (152)
T KOG3311|consen 33 IKGIGRRYAEIVCKKADL--DLTKRAGELTEEQILRILQILNDPR-QYKIPDWFLNRQKDIIDGKVNHLLGNGLDTRLRA 109 (152)
T ss_pred EeeechhhhhhhhhhcCc--chhhhhccccHHHHHHHHHHhcCHH-HhcCchHHHHhhcccccCccccccchhhhhHHHH
Confidence 334444555555444442 2233567899999999999998321 1345566677777888999666667778888888
Q ss_pred HHHHHHHH
Q psy9749 136 KIKKYTDL 143 (148)
Q Consensus 136 ~L~~l~~~ 143 (148)
.++++++.
T Consensus 110 ~ieRlkki 117 (152)
T KOG3311|consen 110 DIERLKKI 117 (152)
T ss_pred HHHHHhhh
Confidence 88888764
No 102
>PF07216 LcrG: LcrG protein; InterPro: IPR009863 This family consists of several bacterial LcrG proteins. Yersiniae are equipped with the Yop virulon, an apparatus that allows extracellular bacteria to deliver toxic Yop proteins inside the host cell cytosol in order to sabotage the communication networks of the host cell or even to cause cell death. LcrG is a component of the Yop virulon involved in the regulation of secretion of the Yops []. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the prot ein is believed to make a 1:1 complex with PcrV (LcrV) []. Mutations in LcrG cause premature secretion of effector proteins into the medium [].
Probab=20.80 E-value=1.5e+02 Score=19.66 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy9749 19 QKSLKIEALKIVGQKKNFSAASINLLA 45 (148)
Q Consensus 19 ~~~~K~~~l~~~~~~~~~~~~~~nfl~ 45 (148)
+.++|.+++.+++++.+++|.+...|.
T Consensus 20 dsd~R~~llqEm~~gLg~~p~ag~lLf 46 (93)
T PF07216_consen 20 DSDHRNDLLQEMLEGLGLGPVAGELLF 46 (93)
T ss_pred hhHHHHHHHHHHHHhcCCChhHHHHHh
Confidence 467899999999998889988776553
No 103
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=20.56 E-value=64 Score=23.29 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=13.8
Q ss_pred EeecCCCHHHHHHHHHH
Q psy9749 79 ITARPLEEADKSELQST 95 (148)
Q Consensus 79 ~sa~~L~~~~~~~l~~~ 95 (148)
.|.++||+|+++.|..+
T Consensus 134 ~S~~~LS~EE~eal~~A 150 (151)
T PF14584_consen 134 QSSYPLSEEEKEALEKA 150 (151)
T ss_pred cccccCCHHHHHHHHHh
Confidence 46788999999888765
No 104
>TIGR02573 LcrG_PcrG type III secretion protein LcrG. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the protein is believed to make a 1:1 complex with PcrV (LcrV). Mutants of LcrG cause premature secretion of effector proteins into the medium.
Probab=20.51 E-value=1.7e+02 Score=19.29 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy9749 19 QKSLKIEALKIVGQKKNFSAASINLLA 45 (148)
Q Consensus 19 ~~~~K~~~l~~~~~~~~~~~~~~nfl~ 45 (148)
..+.+.+++.+++.+.+++|.+...|.
T Consensus 17 dsd~R~~llqEm~~gLgl~p~ag~~Lf 43 (90)
T TIGR02573 17 DSDERNDLLQEMWQGLGLGPVAGEVLF 43 (90)
T ss_pred chHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 468899999999998899998877653
No 105
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=20.40 E-value=2.1e+02 Score=17.12 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=29.0
Q ss_pred HHHHhhhCcCCCHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcC
Q psy9749 8 KFRDFVLDPTIQKSLKIEALKIVGQKKNFSA-ASINLLALLAENG 51 (148)
Q Consensus 8 ~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~-~~~nfl~~l~~~~ 51 (148)
-++.......++.++=..++..++. +.+++ .+-.||..+.-+|
T Consensus 5 ~l~~l~~g~~Ls~~e~~~~~~~i~~-g~~s~~qiaAfL~al~~kg 48 (66)
T PF02885_consen 5 ILKKLRDGEDLSREEAKAAFDAILD-GEVSDAQIAAFLMALRMKG 48 (66)
T ss_dssp HHHHHHTT----HHHHHHHHHHHHT-TSS-HHHHHHHHHHHHHH-
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhC
Confidence 3566777788899999999999997 57765 5788888877766
No 106
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.20 E-value=1.4e+02 Score=20.10 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=22.2
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEee
Q psy9749 82 RPLEEADKSELQSTLKLFAKKGENILLTT 110 (148)
Q Consensus 82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~ 110 (148)
-|-+.+..+.|+..|++++ ++..+.+++
T Consensus 22 aPtsKdt~eWLeaalkRKy-p~~~F~~~Y 49 (106)
T COG4837 22 APTSKDTYEWLEAALKRKY-PNQPFKYTY 49 (106)
T ss_pred CCcchhHHHHHHHHHhccC-CCCCcEEEE
Confidence 3556889999999999998 477766665
Done!