Query psy9749
Match_columns 148
No_of_seqs 131 out of 1101
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 18:35:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wss_S ATP synthase subunit O, 100.0 4.4E-39 1.5E-43 240.2 -9.7 145 2-147 45-189 (190)
2 1abv_A Delta subunit of the F1 99.9 8.5E-23 2.9E-27 143.8 8.1 96 3-100 37-132 (134)
3 2dm9_A V-type ATP synthase sub 97.3 0.00082 2.8E-08 48.6 7.7 70 72-145 118-189 (198)
4 3v6i_A V-type ATP synthase sub 96.9 0.027 9.3E-07 40.7 12.6 103 22-145 74-178 (187)
5 4efa_E V-type proton ATPase su 96.3 0.028 9.5E-07 42.1 9.2 86 56-144 117-214 (233)
6 3lg8_A A-type ATP synthase sub 95.0 0.005 1.7E-07 41.0 0.4 55 89-145 42-98 (106)
7 3tuf_A Stage III sporulation p 81.8 1.2 4.1E-05 32.6 3.4 93 7-111 101-194 (197)
8 2hc5_A ORF 99, hypothetical pr 64.2 11 0.00036 25.2 4.4 42 81-124 32-73 (117)
9 2aya_A DNA polymerase III subu 62.1 11 0.00037 25.2 4.2 31 82-114 65-95 (128)
10 2npb_A Selenoprotein W; struct 61.4 16 0.00053 23.4 4.7 41 87-129 17-57 (96)
11 1l6x_B Minimized B-domain of p 59.6 12 0.00043 19.3 3.1 25 7-31 7-31 (34)
12 4a5z_A MITD1, MIT domain-conta 47.9 70 0.0024 22.5 7.7 53 71-125 66-128 (163)
13 1zda_A Mini protein A domain, 44.7 16 0.00055 19.3 2.1 25 6-30 11-35 (38)
14 3abf_A 4-oxalocrotonate tautom 44.1 39 0.0013 18.7 4.2 25 76-100 4-28 (64)
15 3ff5_A PEX14P, peroxisomal bio 44.0 19 0.00066 20.6 2.6 21 9-29 16-39 (54)
16 2xzm_F EIF1; ribosome, transla 41.1 19 0.00065 23.3 2.6 51 71-128 27-77 (101)
17 1r4g_A RNA polymerase alpha su 40.7 48 0.0016 18.5 5.3 41 8-49 6-46 (53)
18 1j26_A Immature colon carcinom 36.0 31 0.0011 22.7 3.0 53 80-146 52-105 (112)
19 3m20_A 4-oxalocrotonate tautom 35.8 52 0.0018 18.4 3.8 24 76-100 3-26 (62)
20 2ogh_A Eukaryotic translation 35.0 76 0.0026 20.5 4.8 51 71-128 34-84 (108)
21 2w84_A Peroxisomal membrane pr 34.3 31 0.001 20.9 2.5 21 9-29 21-44 (70)
22 2x4k_A 4-oxalocrotonate tautom 30.7 68 0.0023 17.3 4.2 24 76-99 6-29 (63)
23 3gx8_A Monothiol glutaredoxin- 29.9 48 0.0016 21.5 3.2 78 37-120 2-88 (121)
24 4fjo_A DNA repair protein REV1 26.7 1.1E+02 0.0038 19.2 4.5 81 19-107 10-95 (97)
25 4aan_A Cytochrome C551 peroxid 26.1 76 0.0026 24.9 4.2 40 49-100 278-317 (341)
26 2llw_A Heat shock protein STI1 25.5 1.1E+02 0.0037 18.2 4.0 43 5-51 18-65 (71)
27 2q82_A Core protein P7; NESG, 24.8 50 0.0017 21.7 2.5 41 82-124 5-45 (129)
28 1xg8_A Hypothetical protein SA 24.7 83 0.0028 20.6 3.5 28 83-111 26-53 (111)
29 3do9_A UPF0302 protein BA_1542 24.2 90 0.0031 22.3 4.0 37 16-52 5-42 (188)
30 2if1_A EIF1, SUI1; translation 23.9 38 0.0013 22.8 1.8 53 71-130 52-104 (126)
31 2opa_A Probable tautomerase YW 23.5 97 0.0033 16.7 4.2 25 76-100 3-27 (61)
32 3ipz_A Monothiol glutaredoxin- 23.0 63 0.0022 20.3 2.8 77 35-120 2-87 (109)
33 1otf_A 4-oxalocrotonate tautom 22.9 1E+02 0.0034 16.7 4.2 25 76-100 3-27 (62)
34 2lnm_A Protein TIC 40, chlorop 22.7 16 0.00055 21.2 -0.2 25 3-32 8-32 (62)
35 4dxd_A Cell division protein F 22.7 3E+02 0.01 22.1 7.9 50 75-124 267-316 (396)
36 1wh9_A 40S ribosomal protein S 22.5 1.4E+02 0.0047 18.6 4.2 43 74-116 37-87 (92)
37 3qwo_C Motavizumab epitope sca 21.7 1E+02 0.0036 17.6 3.1 26 7-32 8-33 (57)
38 3mb2_A 4-oxalocrotonate tautom 20.9 1.3E+02 0.0044 17.2 4.2 25 76-100 4-28 (72)
39 1hyw_A GPW, head-TO-tail joini 20.6 1.4E+02 0.0049 17.6 6.2 48 85-146 3-56 (68)
40 2kpt_A Putative secreted prote 20.2 1.1E+02 0.0037 20.7 3.6 27 75-101 46-72 (148)
41 3nrh_A Uncharacterized protein 20.2 1.4E+02 0.0048 21.3 4.3 87 51-145 34-124 (182)
No 1
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A
Probab=100.00 E-value=4.4e-39 Score=240.16 Aligned_cols=145 Identities=43% Similarity=0.716 Sum_probs=115.6
Q ss_pred ccccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEee
Q psy9749 2 ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 81 (148)
Q Consensus 2 l~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa 81 (148)
++. +|+|+.+|.||.++.++|.+++..+|++.++++.+.|||++|++++|+..+++|+++|..++++++|+..|+|+||
T Consensus 45 ~~~-~~~l~~~l~~P~i~~~~K~~~l~~~~~~~~~~~~~~nfl~ll~~~~R~~~l~~I~~~f~~l~~~~~~~~~a~V~sA 123 (190)
T 2wss_S 45 ILK-EPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTA 123 (190)
T ss_dssp HSS-STTSHHHHTCTTTTTSTTTTTTTHHHHTTTCCSSSSHHHHHHHHTTCGGGHHHHHHHHHHHHTTTSCCCCBCSSSC
T ss_pred HHC-CHHHHHHHhCCCCCHHHHHHHHHHHHcccCCCHHHHHHHHHHHhCCcHhhHHHHHHHHHHHHHHHcCeeEEEEEEC
Confidence 567 9999999999999999999999999984468999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehhHHHHHHHHHHHhcCC
Q psy9749 82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQTP 147 (148)
Q Consensus 82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~Sv~~~L~~l~~~l~~~ 147 (148)
.|||++|+++|.+.|+++++.|+++.++++|||+||||++|++||++||+|++++|++|++.|.++
T Consensus 124 ~~Ls~~q~~~l~~~L~~~~g~~~~v~l~~~vDpsLiGG~~v~vgd~viD~Sv~~~L~~l~~~L~~~ 189 (190)
T 2wss_S 124 SALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMREI 189 (190)
T ss_dssp BCCCCSSSTTTTTTTTSSTTTCC----------------------CCTTTTTTTTTTTTCTTTTTC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCeEEEEEEEChhHhCeEEEEECCEEEehhHHHHHHHHHHHHhhc
Confidence 999999999999999999822369999999999999999999999999999999999999998775
No 2
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B
Probab=99.88 E-value=8.5e-23 Score=143.79 Aligned_cols=96 Identities=18% Similarity=0.326 Sum_probs=66.5
Q ss_pred cccchHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeec
Q psy9749 3 LKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITAR 82 (148)
Q Consensus 3 ~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~ 82 (148)
+.++|+|+.+|. |.++.++|.+++..+|+ +++++.+.|||++|++++|+..+++|+.+|..++++++|+..|+|+||.
T Consensus 37 ~~~~~~l~~~l~-P~i~~~~K~~~l~~~~~-~~~~~~~~nfl~ll~~~~Rl~~l~~I~~~f~~l~~~~~~~~~a~V~SA~ 114 (134)
T 1abv_A 37 VTKNEQMAELLS-GALAPETLAESFIAVCG-EQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISAA 114 (134)
T ss_dssp HHTSHHHHHHHT-CSSCHHHHHHHHHHHHC-SCCCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHC---------
T ss_pred HhcCHHHHHHHC-ccCCHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHCCeeEEEEEecC
Confidence 467899999999 99999999999999997 5899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy9749 83 PLEEADKSELQSTLKLFA 100 (148)
Q Consensus 83 ~L~~~~~~~l~~~l~~~~ 100 (148)
|||++|+++|.+.|++++
T Consensus 115 ~Ls~~q~~~l~~~L~~~~ 132 (134)
T 1abv_A 115 ALSEQQLAKISAAMEKRL 132 (134)
T ss_dssp ------------------
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999999987
No 3
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=97.33 E-value=0.00082 Score=48.65 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=43.0
Q ss_pred CCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE--CCEEeehhHHHHHHHHHHHhc
Q psy9749 72 GDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV--GDKYVDMSVASKIKKYTDLLQ 145 (148)
Q Consensus 72 ~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v--g~~~iD~Sv~~~L~~l~~~l~ 145 (148)
+...+.|+ ..|-+.+..+.+...+.+.++ + +.++..-++...||++|.. |+..+|+|+.++|+.+...+.
T Consensus 118 ~~~~v~i~-v~~~D~~~v~~~~~~~~~~~~-~--~~l~i~~~~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~ 189 (198)
T 2dm9_A 118 NEKKVRVM-SNEKTLGLIASRIEEIKSELG-D--VSIELGETVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIR 189 (198)
T ss_dssp TCSEEEEE-CCHHHHHHHHHTHHHHHHHCT-T--CEEEECCCCCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHH
T ss_pred CCCCEEEE-ECHhHHHHHHHHHHHHHHHhc-C--ceEEECCCCCccCceEEEeCCCCEEEECcHHHHHHHHHHHhH
Confidence 33344444 223233334444444445552 2 2333322557889999999 667999999999999988764
No 4
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=96.94 E-value=0.027 Score=40.74 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhc
Q psy9749 22 LKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAK 101 (148)
Q Consensus 22 ~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~ 101 (148)
.|.+++..+|. .+..-|.-+... .....++..+........+.-.+.+ . ++++...+...+...
T Consensus 74 ar~eli~~v~~------~a~~~L~~~~~~---~~Y~~~L~~Li~ea~~~l~~~~~vv--~---~~~D~~~v~~~~~~~-- 137 (187)
T 3v6i_A 74 ARGEVLEEVRR------RVREALEALPQK---PEWPEVVRKLALEALEALPGAKALV--A---NPEDLPHLEALARER-- 137 (187)
T ss_dssp HHHHHHHHHHH------HHHHHHHHGGGS---TTHHHHHHHHHHHHHHHCTTCCEEE--E---CTTTHHHHHHHHHHH--
T ss_pred HHHHHHHHHHH------HHHHHHHhhhCC---ccHHHHHHHHHHHHHHHcCCCCeEE--E---CHHHHHHHHHHHHhc--
Confidence 45566666664 222222222332 2245555555555444444444433 3 344555566666553
Q ss_pred CCCeEEEeeeeCCCccceeEEEE--CCEEeehhHHHHHHHHHHHhc
Q psy9749 102 KGENILLTTKVDPSIIGGMIVSV--GDKYVDMSVASKIKKYTDLLQ 145 (148)
Q Consensus 102 ~~~~i~l~~~vD~~ligGi~i~v--g~~~iD~Sv~~~L~~l~~~l~ 145 (148)
|- ++..+++..||+++.. |...+|.|+.++|+.+...+.
T Consensus 138 -~~----~~~~~~~~~GGvil~~~dG~I~vdnTle~rL~~~~~~~~ 178 (187)
T 3v6i_A 138 -GV----ELQAEPALRLGVRAVGAEGKTQVENSLLARLDRAWDALS 178 (187)
T ss_dssp -TC----EEEECTTCCSEEEEECTTSSCEEEEEHHHHHHHHHHHHH
T ss_pred -Ce----eeCCCCcccCceEEEeCCCCEEEECCHHHHHHHHHHHhH
Confidence 32 3356889999999998 336999999999999987763
No 5
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=96.33 E-value=0.028 Score=42.13 Aligned_cols=86 Identities=10% Similarity=0.084 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHhcCCccEEEEeecCCCHHH----HHHHHHHHHHHhcCCCeEEEeeee------CCCccceeEEEEC
Q psy9749 56 IDGVINNFSIIMAAHRGDLPVEVITARPLEEAD----KSELQSTLKLFAKKGENILLTTKV------DPSIIGGMIVSVG 125 (148)
Q Consensus 56 l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~----~~~l~~~l~~~~~~~~~i~l~~~v------D~~ligGi~i~vg 125 (148)
...++..+........+.-.+.|++.. =+.+. ...+...+.... ++.......+ .++.+||++|..+
T Consensus 117 Y~~lL~~Li~eal~~l~e~~v~V~~~~-~D~~lv~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~GGvil~s~ 193 (233)
T 4efa_E 117 YKPILQSLIVEALLKLLEPKAIVKALE-RDVDLIESMKDDIMREYGEKA--QRAPLEEIVISNDYLNKDLVSGGVVVSNA 193 (233)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEEECT-TTHHHHTTSHHHHHHHHHHHT--TTSCCCEEEECSSCCCTTTCSSEEEEECT
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEecH-hhHHHHHHHHHHHHHHHHHHh--CCCCccccccccccCCcccccCceEEEEC
Confidence 455555555544445555556666533 34333 334444455544 4333333333 3457899999874
Q ss_pred C--EEeehhHHHHHHHHHHHh
Q psy9749 126 D--KYVDMSVASKIKKYTDLL 144 (148)
Q Consensus 126 ~--~~iD~Sv~~~L~~l~~~l 144 (148)
| ..+|.|+.++|+.+...+
T Consensus 194 dGkI~vdNTle~RL~~~~~~~ 214 (233)
T 4efa_E 194 SDKIEINNTLEERLKLLSEEA 214 (233)
T ss_dssp TSCCEEEEEHHHHHHHHHHHH
T ss_pred CCCEEEECCHHHHHHHHHHHH
Confidence 3 699999999999888765
No 6
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}
Probab=94.96 E-value=0.005 Score=40.96 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE--CCEEeehhHHHHHHHHHHHhc
Q psy9749 89 KSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV--GDKYVDMSVASKIKKYTDLLQ 145 (148)
Q Consensus 89 ~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v--g~~~iD~Sv~~~L~~l~~~l~ 145 (148)
...+.+.++++. |+++.+..--..+.+||+++.. |...+|.|+.++|+.+..++.
T Consensus 42 l~~~~~e~~~~~--g~~~~v~~~~~~~~~GGvil~s~dg~I~vdNTle~rL~~l~~~~~ 98 (106)
T 3lg8_A 42 LWNLEKEVENAT--KKVTVLKKGEPVDIAGGCIIETADGLKSLDNSLEAIFNRNLNVIR 98 (106)
T ss_dssp CTTTTTTHHHHS--SSCCCCCCCCCCSSSCBCBCSSCSCBCCCCSHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCeEEEEeCCCccccccEEEEeCCCCEEEECCHHHHHHHHHHHHH
Confidence 333444566665 6665554433357899999998 777899999999999998764
No 7
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=81.84 E-value=1.2 Score=32.63 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=59.3
Q ss_pred hHHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-cCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCC
Q psy9749 7 VKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAE-NGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLE 85 (148)
Q Consensus 7 ~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~-~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~ 85 (148)
..|..++.|+.++.++|.+..+.+.. ..-...-...+.-|+. +|--.. ++....+.+.+.|. +..|+
T Consensus 101 E~L~eII~n~n~S~eeK~eA~~ql~e-Lt~~~ekE~~IE~LLKAKGF~DA----------VV~i~dd~V~VVVk-a~~Ls 168 (197)
T 3tuf_A 101 EELNAIVSSDDATAKEKSEAYDKMTA-LSEVEGTEKQLETLIKTQGYEDA----------LVNAEGDKINITVK-SDKHS 168 (197)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCSCE----------EEECSSSEEEEEEE-CSCCC
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCce----------EEEecCCEEEEEEe-CCCCC
Confidence 46889999999999999999998875 1112233344444443 221111 11122333445555 68999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEeee
Q psy9749 86 EADKSELQSTLKLFAKKGENILLTTK 111 (148)
Q Consensus 86 ~~~~~~l~~~l~~~~~~~~~i~l~~~ 111 (148)
+.+...|.+.+.+.++.+..|.+.|.
T Consensus 169 ~~eaaqI~DIV~r~tgv~~dV~Vqf~ 194 (197)
T 3tuf_A 169 KSKATAIIDLVAKEIKTMKDVAVTFE 194 (197)
T ss_dssp HHHHHHHHHTSCHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCceEEEee
Confidence 99999999999998853466665554
No 8
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=64.16 E-value=11 Score=25.17 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=33.9
Q ss_pred ecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE
Q psy9749 81 ARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV 124 (148)
Q Consensus 81 a~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v 124 (148)
..+++.++.++..+.|.+.+. ..+..+.|.+|++. |.++|+|
T Consensus 32 ~~~~~~eel~~av~~lN~~~~-~~n~~L~F~vdee~-~~~vVkV 73 (117)
T 2hc5_A 32 VHQVSYTNLAEMVGEMNKLLE-PSQVHLKFELHDKL-NEYYVKV 73 (117)
T ss_dssp CCCCCHHHHHHHHHHHHHHHT-TSSCCEEEEEEEET-TEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHHH-hcCCceEEEEecCC-CcEEEEE
Confidence 457788999999999998874 45667888888874 8899987
No 9
>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase III TAU subunit, transferase; HET: DNA; NMR {Escherichia coli}
Probab=62.10 E-value=11 Score=25.24 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=26.3
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCC
Q psy9749 82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDP 114 (148)
Q Consensus 82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~ 114 (148)
.=.++...++|.+.|+..| |..+++.+.++.
T Consensus 65 hL~~~~~~~~L~~ALs~~~--G~~v~L~i~~g~ 95 (128)
T 2aya_A 65 HLNNRGAQQKLAEALSMLK--GSTVELTIVEDD 95 (128)
T ss_dssp TTCCHHHHHHHHHHHHHHH--SSCCEEEEEECC
T ss_pred HhCCHHHHHHHHHHHHHHH--CCCEEEEEEECC
Confidence 3457899999999999999 889998887754
No 10
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=61.44 E-value=16 Score=23.43 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEe
Q psy9749 87 ADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYV 129 (148)
Q Consensus 87 ~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~i 129 (148)
..-..+.+.|...| ...+.+.....|.--|=|.|.++|..+
T Consensus 17 ~ra~~laqeLl~~F--p~~l~V~~~l~p~~~G~FEV~vng~lV 57 (96)
T 2npb_A 17 PKYLQLKEKLEHEF--PGCLDICGEGTPQVTGFFEVTVAGKLV 57 (96)
T ss_dssp HHHHHHHHHHHHHS--BTTEEEEECCCSSCCSCCEEEETTEEE
T ss_pred HHHHHHHHHHHHhC--CcceEEEEEEcCCCCcEEEEEECCEEE
Confidence 45567888888888 445888888899888889999988765
No 11
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=59.59 E-value=12 Score=19.27 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=22.0
Q ss_pred hHHHHhhhCcCCCHHHHHHHHHHHh
Q psy9749 7 VKFRDFVLDPTIQKSLKIEALKIVG 31 (148)
Q Consensus 7 ~~l~~~l~~p~i~~~~K~~~l~~~~ 31 (148)
..|-++|..|.++.++|...|+.+=
T Consensus 7 naFYevLh~~nLtEeQrn~yI~slk 31 (34)
T 1l6x_B 7 RRFYEALHDPNLNEEQRNAKIKSIR 31 (34)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHh
Confidence 4578899999999999999999874
No 12
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=47.89 E-value=70 Score=22.49 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=30.6
Q ss_pred cCCccEEEEeecCCC---HHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccc-------eeEEEEC
Q psy9749 71 RGDLPVEVITARPLE---EADKSELQSTLKLFAKKGENILLTTKVDPSIIG-------GMIVSVG 125 (148)
Q Consensus 71 ~~~~~~~v~sa~~L~---~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~lig-------Gi~i~vg 125 (148)
.+...+.++|..+=. ++|.+.+.+.=++.. ...|.++++.|+++-. |++|++|
T Consensus 66 ~~~~~I~L~T~~d~~~~~~~Q~~~L~~ik~sL~--~~gI~l~~~fs~tiHDR~I~~dnGW~IkiG 128 (163)
T 4a5z_A 66 CKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLR--SHGVLLEVQYSSSIHDREIRFNNGWMIKIG 128 (163)
T ss_dssp CCCCEEEEEECCCCSTTHHHHHHHHHHHHHHHH--HTTCEEEEEECTTCCCCEEEETTSEEEEET
T ss_pred CCccEEEEEeCCccccCHHHHHHHHHHHHHHHH--HCCCEEEEEeCCCccceEEEecCCeEEEEC
Confidence 455568888876433 234433333322322 3468888888987654 6666554
No 13
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=44.73 E-value=16 Score=19.33 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=22.0
Q ss_pred chHHHHhhhCcCCCHHHHHHHHHHH
Q psy9749 6 DVKFRDFVLDPTIQKSLKIEALKIV 30 (148)
Q Consensus 6 ~~~l~~~l~~p~i~~~~K~~~l~~~ 30 (148)
-..|-++|..|.++.++|..+|+.+
T Consensus 11 QnaFYevLh~~nLtEeQrn~yI~sl 35 (38)
T 1zda_A 11 QRRFYEALHDPNLNEEQRNAKIKSI 35 (38)
T ss_dssp SHHHHHHHSCSSSCTTHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHhHHHHh
Confidence 3568889999999999999999877
No 14
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=44.11 E-value=39 Score=18.73 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=19.8
Q ss_pred EEEEeecCCCHHHHHHHHHHHHHHh
Q psy9749 76 VEVITARPLEEADKSELQSTLKLFA 100 (148)
Q Consensus 76 ~~v~sa~~L~~~~~~~l~~~l~~~~ 100 (148)
+.|.+....+++|++++.+.|.+.+
T Consensus 4 i~i~~~~g~s~eqk~~l~~~lt~~l 28 (64)
T 3abf_A 4 LKVTLLEGRPPEKKRELVRRLTEMA 28 (64)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH
Confidence 5677777899999998888777654
No 15
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=44.04 E-value=19 Score=20.61 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=16.5
Q ss_pred HHHhhhCcCC---CHHHHHHHHHH
Q psy9749 9 FRDFVLDPTI---QKSLKIEALKI 29 (148)
Q Consensus 9 l~~~l~~p~i---~~~~K~~~l~~ 29 (148)
-+.||.||.| |.++|.+||+.
T Consensus 16 Av~FL~dp~V~~sp~~~K~~FL~s 39 (54)
T 3ff5_A 16 AVKFLQNSRVRQSPLATRRAFLKK 39 (54)
T ss_dssp HHHHHHCTTGGGSCHHHHHHHHHH
T ss_pred HHHHhCChhhhcCCHHHHHHHHHH
Confidence 4678999876 67888888874
No 16
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=41.12 E-value=19 Score=23.25 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=36.5
Q ss_pred cCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEE
Q psy9749 71 RGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKY 128 (148)
Q Consensus 71 ~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~ 128 (148)
++...+++.+..+ .+...++|.+.|++++ +..-.+ +-+|+ +|-.|++-+..
T Consensus 27 ~g~K~VT~V~Gl~-~~~dlk~laK~lKkk~--acggsV--~~~~~--~g~~I~iQGD~ 77 (101)
T 2xzm_F 27 RGRKCFTTVEGIP-PEFDYEKIMKYWKKWL--SCNATI--VEEDE--GKKVIKLNGDH 77 (101)
T ss_dssp ETTEEEEEEECCC-TTSCTHHHHHHHHHHH--TSCCCE--EECST--TCEEEEEESCC
T ss_pred cCCccEEEEecCC-CchhHHHHHHHHHHHh--cCCeEE--ecCCC--CceEEEEeCcH
Confidence 3445677888888 8889999999999999 443223 34466 78888885443
No 17
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=40.66 E-value=48 Score=18.55 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=33.9
Q ss_pred HHHHhhhCcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy9749 8 KFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAE 49 (148)
Q Consensus 8 ~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~ 49 (148)
.|+-+..|..++..+|...+.++-. +.-++++.+...+.-+
T Consensus 6 SL~~vI~nS~LS~~~K~sYi~~L~~-CktdqEV~~~Memf~E 46 (53)
T 1r4g_A 6 SLRLVIESSPLSRAEKAAYVKSLSK-CKTDQEVKAVMELVEE 46 (53)
T ss_dssp HHHHHHTTSCCCSHHHHHHHHHHHT-CCSSHHHHHHHHHHHH
T ss_pred hHhhhhcCCcccHHHHHHHHHHHHH-ccchHHHHHHHHHHHH
Confidence 4677788888899999999999975 7889999888876654
No 18
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=35.97 E-value=31 Score=22.69 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=35.7
Q ss_pred eecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE-CCEEeehhHHHHHHHHHHHhcC
Q psy9749 80 TARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV-GDKYVDMSVASKIKKYTDLLQT 146 (148)
Q Consensus 80 sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v-g~~~iD~Sv~~~L~~l~~~l~~ 146 (148)
|+.-|++..+++|.+.+..++ .+. |+++|+. ..+.-..+-...+++|+..|.+
T Consensus 52 t~~~Lp~~~k~rl~~~~~~ri--~~~------------G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~ 105 (112)
T 1j26_A 52 SADWIEEPVRQKIALTHKNKI--NKA------------GELVLTSESSRYQFRNLAECLQKIRDMIAE 105 (112)
T ss_dssp GCTTSCHHHHHHHHHHTTTTB--CSS------------SEEEEEECCCSSHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHhhcccc--ccC------------CeEEEEECCccCHHHHHHHHHHHHHHHHHH
Confidence 567889999999988766655 332 6677777 3444566666667777666543
No 19
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=35.80 E-value=52 Score=18.43 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=18.8
Q ss_pred EEEEeecCCCHHHHHHHHHHHHHHh
Q psy9749 76 VEVITARPLEEADKSELQSTLKLFA 100 (148)
Q Consensus 76 ~~v~sa~~L~~~~~~~l~~~l~~~~ 100 (148)
+.|.. ...|++|+++|.+.+.+.+
T Consensus 3 I~I~~-~grt~eqK~~L~~~it~~~ 26 (62)
T 3m20_A 3 LIVYG-PKLDVGKKREFVERLTSVA 26 (62)
T ss_dssp EEEEC-SCCCHHHHHHHHHHHHHHH
T ss_pred EEEEE-CCCCHHHHHHHHHHHHHHH
Confidence 45666 7899999999988887644
No 20
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=34.97 E-value=76 Score=20.51 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=36.8
Q ss_pred cCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEE
Q psy9749 71 RGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKY 128 (148)
Q Consensus 71 ~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~ 128 (148)
++...+++.+..+ ++...++|.+.|++++ +..-.+ +-+|+ +|-.|++-+..
T Consensus 34 ~g~K~VT~V~Gl~-~~~dlk~lak~lKkk~--acggsV--~~~~~--~g~~I~iQGD~ 84 (108)
T 2ogh_A 34 NGRKTLTTVQGVP-EEYDLKRILKVLKKDF--ACNGNI--VKDPE--MGEIIQLQGDQ 84 (108)
T ss_dssp SSSCCEEEEECCC-TTSCHHHHHHHHHHHH--CCCEEE--ECCTT--SSCEEEEESSC
T ss_pred cCCceEEEEeCCC-cchhHHHHHHHHHHHh--cCceEE--ecCCC--CceEEEEcCCH
Confidence 4556788888888 4778999999999999 555444 45566 57788774433
No 21
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=34.31 E-value=31 Score=20.87 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=15.6
Q ss_pred HHHhhhCcCC---CHHHHHHHHHH
Q psy9749 9 FRDFVLDPTI---QKSLKIEALKI 29 (148)
Q Consensus 9 l~~~l~~p~i---~~~~K~~~l~~ 29 (148)
-+.||.||.| |.++|.+||+.
T Consensus 21 Av~FLqdp~V~~sp~~~K~~FL~s 44 (70)
T 2w84_A 21 AVKFLQNSRVRQSPLATRRAFLKK 44 (70)
T ss_dssp HHHHHCSTTGGGSCHHHHHHHHHH
T ss_pred HHHHhCChhhhhCCHHHHHHHHHH
Confidence 3568888876 67888888774
No 22
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=30.69 E-value=68 Score=17.35 Aligned_cols=24 Identities=17% Similarity=0.039 Sum_probs=18.7
Q ss_pred EEEEeecCCCHHHHHHHHHHHHHH
Q psy9749 76 VEVITARPLEEADKSELQSTLKLF 99 (148)
Q Consensus 76 ~~v~sa~~L~~~~~~~l~~~l~~~ 99 (148)
+.|.+....+++++++|.+.+.+.
T Consensus 6 i~i~~~~g~s~e~k~~l~~~l~~~ 29 (63)
T 2x4k_A 6 VNVKLLEGRSDEQLKNLVSEVTDA 29 (63)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHH
Confidence 567777778999998888877654
No 23
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=29.94 E-value=48 Score=21.48 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHcCCcccHHH---------HHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEE
Q psy9749 37 SAASINLLALLAENGKIKNIDG---------VINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENIL 107 (148)
Q Consensus 37 ~~~~~nfl~~l~~~~r~~~l~~---------i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~ 107 (148)
++.+..++.-++..+++-.+.. -+..-.++.... |+..- .+....++++ ..+++.|.+.. |..-.
T Consensus 2 ~~~~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~-gv~~~-~~~~~dv~~~--~~~~~~l~~~s--g~~tv 75 (121)
T 3gx8_A 2 STEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQ-GVDPA-KFAAYNVLED--PELREGIKEFS--EWPTI 75 (121)
T ss_dssp CHHHHHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHH-TBCGG-GEEEEECTTC--HHHHHHHHHHH--TCCSS
T ss_pred CHHHHHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHc-CCCcc-eEEEEEecCC--HHHHHHHHHHh--CCCCC
Confidence 5778888888888887765543 244444554443 33210 0111122211 34555666665 44334
Q ss_pred EeeeeCCCcccee
Q psy9749 108 LTTKVDPSIIGGM 120 (148)
Q Consensus 108 l~~~vD~~ligGi 120 (148)
-..-||-..|||+
T Consensus 76 P~vfI~g~~iGG~ 88 (121)
T 3gx8_A 76 PQLYVNKEFIGGC 88 (121)
T ss_dssp CEEEETTEEEESH
T ss_pred CeEEECCEEEecH
Confidence 4557888889986
No 24
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=26.75 E-value=1.1e+02 Score=19.20 Aligned_cols=81 Identities=16% Similarity=0.013 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHH
Q psy9749 19 QKSLKIEALKIVGQKKNFS-----AASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQ 93 (148)
Q Consensus 19 ~~~~K~~~l~~~~~~~~~~-----~~~~nfl~~l~~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~ 93 (148)
+..+=+.++..=......+ ..+..||+-+++.+++.-+..++..+..++.+..+. .=.-| =..-++.+.
T Consensus 10 ~l~dvr~~l~~Wv~~~~~P~~~DV~~l~~yL~~lv~~~~lek~~~vlk~l~rlv~~~~~~---~W~~A---~~~I~~~VQ 83 (97)
T 4fjo_A 10 EFSDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYMKRLMQQSVES---VWNMA---FDFILDNVQ 83 (97)
T ss_dssp SHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSCH---HHHHH---HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhccccc---HHHHH---HHHHHHHHH
Confidence 4455555555555432221 257788888899999999999999999999764321 00000 023445556
Q ss_pred HHHHHHhcCCCeEE
Q psy9749 94 STLKLFAKKGENIL 107 (148)
Q Consensus 94 ~~l~~~~~~~~~i~ 107 (148)
..+.+.| |....
T Consensus 84 ~~v~~~y--G~~L~ 95 (97)
T 4fjo_A 84 VVLQQTY--GSTLK 95 (97)
T ss_dssp HHHHHHH--SSEEC
T ss_pred HHHHHHh--CCCcc
Confidence 6666677 65544
No 25
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=26.11 E-value=76 Score=24.85 Aligned_cols=40 Identities=13% Similarity=0.271 Sum_probs=33.3
Q ss_pred HcCCcccHHHHHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHh
Q psy9749 49 ENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFA 100 (148)
Q Consensus 49 ~~~r~~~l~~i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~ 100 (148)
++|++.-|.++++.|..--. ...|++++++.|.+.|+...
T Consensus 278 HdG~~~tLeevv~~y~~~~~------------~~~Lt~~E~~~LvAFL~tLt 317 (341)
T 4aan_A 278 HSGKVWKLKDAVKIMGSAQL------------GISITDADADKIVTFLNTLT 317 (341)
T ss_dssp TTCCBCCHHHHHHHHHHHHH------------SCCCCHHHHHHHHHHHHTTC
T ss_pred cCCCcCCHHHHHHHHhccCc------------CCCCCHHHHHHHHHHHHccC
Confidence 68999999999988864321 25699999999999999987
No 26
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=25.52 E-value=1.1e+02 Score=18.25 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=23.6
Q ss_pred cchHHHHhhhCcCCCHHHHH-----HHHHHHhcCCCCCHHHHHHHHHHHHcC
Q psy9749 5 TDVKFRDFVLDPTIQKSLKI-----EALKIVGQKKNFSAASINLLALLAENG 51 (148)
Q Consensus 5 ~~~~l~~~l~~p~i~~~~K~-----~~l~~~~~~~~~~~~~~nfl~~l~~~~ 51 (148)
++|++..+|.||.+...-.. ..+.+.+. +|.+.+.+.-|...|
T Consensus 18 ~dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~----nP~v~~~i~kl~~aG 65 (71)
T 2llw_A 18 KDPEVAAIMQDPVMQSILQQAQQNPAALQEHMK----NPEVFKKIQTLIAAG 65 (71)
T ss_dssp HSHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHH----SHHHHHHHHHHHHTT
T ss_pred cCHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHh----CHHHHHHHHHHHHcc
Confidence 58899999999854332211 11222221 466666666665554
No 27
>2q82_A Core protein P7; NESG, OC1, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.83A {Pseudomonas phage PHI12}
Probab=24.83 E-value=50 Score=21.70 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=25.0
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE
Q psy9749 82 RPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV 124 (148)
Q Consensus 82 ~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v 124 (148)
.++|+.++..+...++.+= ..-....-.=|-+.+|||.+--
T Consensus 5 ~~~S~~~r~EL~~R~s~~E--Ts~~VMSH~GDV~~~~GF~V~R 45 (129)
T 2q82_A 5 TDMSKNQRLELQNRLAQYE--TSLMVMSHNGDVPVITGFNVMR 45 (129)
T ss_dssp ---------CHHHHHHHHH--TEEEEEECCSSCCCCTTCEEEE
T ss_pred HHhhHhhHHHHHHHHHHHh--heeEEEecCCCcccccceeEee
Confidence 3578899999999998864 4556667777899999998743
No 28
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=24.73 E-value=83 Score=20.59 Aligned_cols=28 Identities=21% Similarity=-0.016 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCeEEEeee
Q psy9749 83 PLEEADKSELQSTLKLFAKKGENILLTTK 111 (148)
Q Consensus 83 ~L~~~~~~~l~~~l~~~~~~~~~i~l~~~ 111 (148)
|=|.+..+.|+++|+++| ++..+.+++.
T Consensus 26 PSSkeTyEWLqAal~RKy-p~~~f~~~YI 53 (111)
T 1xg8_A 26 PTSKDIYDWLQPLLKRKY-PNISFKYTYI 53 (111)
T ss_dssp CCHHHHHHHHHHHHHHHC-TTSCEEEEEE
T ss_pred CCchhHHHHHHHHHhCcC-CCCceEEEEE
Confidence 456899999999999999 4778887764
No 29
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=24.23 E-value=90 Score=22.34 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=30.3
Q ss_pred cCCCHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCC
Q psy9749 16 PTIQKSLKIEALKIVGQKKNF-SAASINLLALLAENGK 52 (148)
Q Consensus 16 p~i~~~~K~~~l~~~~~~~~~-~~~~~nfl~~l~~~~r 52 (148)
..||.++|+++|+-++..-.+ +++...+|..|..+..
T Consensus 5 ~~vsv~eKk~Fi~wfL~~y~lK~Re~~wiLnyl~~~~~ 42 (188)
T 3do9_A 5 TPVSVNEKKDFVKWFLNNYQLKQRECVWILNYLMSHDQ 42 (188)
T ss_dssp -CCCHHHHHHHHHHHHHHCCBSSTHHHHHHHHHHHCTT
T ss_pred CcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHhCHH
Confidence 468999999999999975444 7899999999988764
No 30
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=23.85 E-value=38 Score=22.78 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=36.9
Q ss_pred cCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEee
Q psy9749 71 RGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVD 130 (148)
Q Consensus 71 ~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD 130 (148)
+|...+++++..+. +...++|.+.|++++ +..-.+ +-+|+ +|-.|++-+..-|
T Consensus 52 ~grK~VT~V~GL~~-~~dlk~laK~LKkk~--acgGtV--k~~~e--~g~~I~IQGD~r~ 104 (126)
T 2if1_A 52 NGRKTLTTVQGIAD-DYDKKKLVKAFKKKF--ACNGTV--IEHPE--YGEVIQLQGDQRK 104 (126)
T ss_dssp SSSCCBCEEBSCCT-TSCHHHHHTTHHHHT--CCCEEE--ECCTT--TSSEEEESBCCHH
T ss_pred cCCccEEEEeCCCC-chhHHHHHHHHHHHh--cCCeEE--ecCCC--CccEEEEcCCHHH
Confidence 44456788888886 778999999999999 555444 34466 6777777554433
No 31
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=23.48 E-value=97 Score=16.73 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=18.1
Q ss_pred EEEEeecCCCHHHHHHHHHHHHHHh
Q psy9749 76 VEVITARPLEEADKSELQSTLKLFA 100 (148)
Q Consensus 76 ~~v~sa~~L~~~~~~~l~~~l~~~~ 100 (148)
+.|......|++|+++|.+.+.+.+
T Consensus 3 i~i~~~~grs~eqk~~l~~~i~~~l 27 (61)
T 2opa_A 3 VTVKMLEGRTDEQKRNLVEKVTEAV 27 (61)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 4566555669999999888776643
No 32
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=22.99 E-value=63 Score=20.26 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHcCCcccHHH---------HHHHHHHHHHHhcCCccEEEEeecCCCHHHHHHHHHHHHHHhcCCCe
Q psy9749 35 NFSAASINLLALLAENGKIKNIDG---------VINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGEN 105 (148)
Q Consensus 35 ~~~~~~~nfl~~l~~~~r~~~l~~---------i~~~~~~l~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~ 105 (148)
..++.+..++.-++..+++-.+.. -+..-.++..+ .|+..-.+ .++++ ..+.+.|.+.. |..
T Consensus 2 ~~s~~~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~-~gi~~~~~----dI~~~--~~~~~~l~~~~--g~~ 72 (109)
T 3ipz_A 2 ALTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKN-LNVPFEDV----NILEN--EMLRQGLKEYS--NWP 72 (109)
T ss_dssp CCCHHHHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHH-TTCCCEEE----EGGGC--HHHHHHHHHHH--TCS
T ss_pred CCCHHHHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHH-cCCCcEEE----ECCCC--HHHHHHHHHHH--CCC
Confidence 467888899999998888765543 13444444443 34332222 22211 23455566655 332
Q ss_pred EEEeeeeCCCcccee
Q psy9749 106 ILLTTKVDPSIIGGM 120 (148)
Q Consensus 106 i~l~~~vD~~ligGi 120 (148)
-.-..-+|-..|||+
T Consensus 73 tvP~ifi~g~~iGG~ 87 (109)
T 3ipz_A 73 TFPQLYIGGEFFGGC 87 (109)
T ss_dssp SSCEEEETTEEEECH
T ss_pred CCCeEEECCEEEeCH
Confidence 233556788888887
No 33
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=22.86 E-value=1e+02 Score=16.69 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=18.1
Q ss_pred EEEEeecCCCHHHHHHHHHHHHHHh
Q psy9749 76 VEVITARPLEEADKSELQSTLKLFA 100 (148)
Q Consensus 76 ~~v~sa~~L~~~~~~~l~~~l~~~~ 100 (148)
+.|......|++|+++|.+.+.+.+
T Consensus 3 i~I~~~~grs~e~k~~l~~~i~~~l 27 (62)
T 1otf_A 3 AQLYIIEGRTDEQKETLIRQVSEAM 27 (62)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 4556555679999999888776543
No 34
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=22.73 E-value=16 Score=21.20 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=17.8
Q ss_pred cccchHHHHhhhCcCCCHHHHHHHHHHHhc
Q psy9749 3 LKTDVKFRDFVLDPTIQKSLKIEALKIVGQ 32 (148)
Q Consensus 3 ~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~ 32 (148)
+.+||++..++.||.+ ...+..+.+
T Consensus 8 l~~dPe~~~~m~dP~~-----~~~lq~i~~ 32 (62)
T 2lnm_A 8 IMENPDVAMAFQNPRV-----QAALMECSE 32 (62)
T ss_dssp HTTSHHHHHHTTSHHH-----HHHHHHHTT
T ss_pred HHcChHHHHHcCCHHH-----HHHHHHHHH
Confidence 4579999999999965 445555543
No 35
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A*
Probab=22.70 E-value=3e+02 Score=22.07 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=42.0
Q ss_pred cEEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEE
Q psy9749 75 PVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV 124 (148)
Q Consensus 75 ~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~v 124 (148)
.+.++....++-.+.+.+.+.+++.+++..+|.+=..+||++=+-++|.+
T Consensus 267 LvnItgg~dl~l~Ev~~~~~~i~~~~~~~a~ii~G~~~d~~l~~~i~Vtv 316 (396)
T 4dxd_A 267 LMNITGGESLSLFEAQEAADIVQDAADEDVNMIFGTVINPELQDEIVVTV 316 (396)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHSSCCEEEEEEEECTTSTTEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCCeEEEeeeeCCCCCCcEEEEE
Confidence 45567778899999999999999988656789999999999977788776
No 36
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=22.47 E-value=1.4e+02 Score=18.63 Aligned_cols=43 Identities=9% Similarity=0.038 Sum_probs=27.9
Q ss_pred ccEEEEeecC-----CCHHHHHHHHHHHHHHhcC-CCeEEE--eeeeCCCc
Q psy9749 74 LPVEVITARP-----LEEADKSELQSTLKLFAKK-GENILL--TTKVDPSI 116 (148)
Q Consensus 74 ~~~~v~sa~~-----L~~~~~~~l~~~l~~~~~~-~~~i~l--~~~vD~~l 116 (148)
..+.++||.| =....+++|++.|++.++. ++++.+ ...-+|++
T Consensus 37 i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~~~~~~v~I~I~eV~~P~l 87 (92)
T 1wh9_A 37 TEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGS 87 (92)
T ss_dssp EEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEECCCSCC
T ss_pred EEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCc
Confidence 3567788887 2345689999999999831 344554 44445543
No 37
>3qwo_C Motavizumab epitope scaffold; immune complex, immune system; HET: EDO; 1.90A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=21.67 E-value=1e+02 Score=17.62 Aligned_cols=26 Identities=8% Similarity=0.161 Sum_probs=22.6
Q ss_pred hHHHHhhhCcCCCHHHHHHHHHHHhc
Q psy9749 7 VKFRDFVLDPTIQKSLKIEALKIVGQ 32 (148)
Q Consensus 7 ~~l~~~l~~p~i~~~~K~~~l~~~~~ 32 (148)
..|-++|..|.++.++|..+|..+=.
T Consensus 8 ~AFYeil~lpnLtEeqRn~yI~slkd 33 (57)
T 3qwo_C 8 LASNEIANLPNLNEEQRSAFLSSIND 33 (57)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcchhhccchHhhhcc
Confidence 35778899999999999999999865
No 38
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=20.95 E-value=1.3e+02 Score=17.20 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=18.4
Q ss_pred EEEEeecCCCHHHHHHHHHHHHHHh
Q psy9749 76 VEVITARPLEEADKSELQSTLKLFA 100 (148)
Q Consensus 76 ~~v~sa~~L~~~~~~~l~~~l~~~~ 100 (148)
+.|......|++++++|.+.+.+.+
T Consensus 4 I~I~~~~grs~eqK~~L~~~it~~l 28 (72)
T 3mb2_A 4 LRITMLEGRSTEQKAELARALSAAA 28 (72)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 4555556789999999888876543
No 39
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=20.57 E-value=1.4e+02 Score=17.61 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECCEEeehh------HHHHHHHHHHHhcC
Q psy9749 85 EEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMS------VASKIKKYTDLLQT 146 (148)
Q Consensus 85 ~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~~~iD~S------v~~~L~~l~~~l~~ 146 (148)
+.+++..+++++.+..- |+ |.+.|..||+.+.++ +...++.++.+|..
T Consensus 3 tq~~L~~a~~A~~~L~t-G~-------------~~vsV~ydgr~V~Y~~asi~~L~~~I~~le~~Lg~ 56 (68)
T 1hyw_A 3 RQEELAAARAALHDLMT-GK-------------RVATVQKDGRRVEFTATSVSDLKKYIAELEVQTGM 56 (68)
T ss_dssp CHHHHHHHHHHHHHHTT-SC-------------CCEEEECSSCEEEECTTTHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHhc-CC-------------ceEEEEECCEEEEEecCCHHHHHHHHHHHHHHhcc
Confidence 46778888888877652 43 223344456666666 66777777777654
No 40
>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}
Probab=20.22 E-value=1.1e+02 Score=20.75 Aligned_cols=27 Identities=7% Similarity=0.000 Sum_probs=13.2
Q ss_pred cEEEEeecCCCHHHHHHHHHHHHHHhc
Q psy9749 75 PVEVITARPLEEADKSELQSTLKLFAK 101 (148)
Q Consensus 75 ~~~v~sa~~L~~~~~~~l~~~l~~~~~ 101 (148)
.+.|.|...+..+..+.....+-+..+
T Consensus 46 qi~VvtV~sl~g~~ie~yA~~l~~~wg 72 (148)
T 2kpt_A 46 VIFVVFLSSFDGVDPETWTQQALQANG 72 (148)
T ss_dssp EEEEEECSCCTTTCHHHHHHHHHHHHT
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHhC
Confidence 344444444555555555555554443
No 41
>3nrh_A Uncharacterized protein BF1032; predominantly alpha-helical protein, structural genomics, PS protein structure initiative; 1.80A {Bacteroides fragilis}
Probab=20.19 E-value=1.4e+02 Score=21.29 Aligned_cols=87 Identities=9% Similarity=0.060 Sum_probs=50.3
Q ss_pred CCcccHHHHHHHHHHHHHHhcCCccEEE----EeecCCCHHHHHHHHHHHHHHhcCCCeEEEeeeeCCCccceeEEEECC
Q psy9749 51 GKIKNIDGVINNFSIIMAAHRGDLPVEV----ITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGD 126 (148)
Q Consensus 51 ~r~~~l~~i~~~~~~l~~~~~~~~~~~v----~sa~~L~~~~~~~l~~~l~~~~~~~~~i~l~~~vD~~ligGi~i~vg~ 126 (148)
.|-..+..+.+-.-.++....-.-.++- ..-..+++++.+.++..|...+ |..-..-...||. ++.++
T Consensus 34 ~~~~fi~~~~klLp~Ly~k~s~Lp~~e~~~~~~~e~~Vte~d~~~lr~~la~lL--g~~D~Y~evfdpd------m~~sd 105 (182)
T 3nrh_A 34 KRSTFVDTTLKILPLLYLKASMLPKCEMIGDESPETYVTEEIYEVLRINLASIL--AEKDDYLEVFLPD------MAYSD 105 (182)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCCCCCHHHHHHHHHHHHHHH--GGGSEEEC----------------
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccCHHHHHHHHHHHHHHc--CCCCceeeeeccc------cccCC
Confidence 4445666666666666665443321211 2244568999999999999999 4333566677774 34467
Q ss_pred EEeehhHHHHHHHHHHHhc
Q psy9749 127 KYVDMSVASKIKKYTDLLQ 145 (148)
Q Consensus 127 ~~iD~Sv~~~L~~l~~~l~ 145 (148)
..+-+|+...|..+-+.|.
T Consensus 106 ~p~~~~iSdDLaDIy~dLk 124 (182)
T 3nrh_A 106 EPIKKNISEDLADIYQDIK 124 (182)
T ss_dssp --CEEEHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHH
Confidence 8889999999988776654
Done!