RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9749
(148 letters)
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP
synthesis, phosphoprotein, UBL conjugation, transit
peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A
2jmx_A
Length = 190
Score = 127 bits (322), Expect = 2e-38
Identities = 60/145 (41%), Positives = 97/145 (66%)
Query: 1 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
+ + K +L+P +++S+K+++L + K+ FS + NL+ LLAENG++ N VI
Sbjct: 43 GQILKEPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVI 102
Query: 61 NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGM 120
+ FS +M+ HRG++P V TA L+E +EL++ LK F KG+ + L K+DPSI+GGM
Sbjct: 103 SAFSTMMSVHRGEVPCTVTTASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGM 162
Query: 121 IVSVGDKYVDMSVASKIKKYTDLLQ 145
IV +G+KYVDMS +KI+K + ++
Sbjct: 163 IVRIGEKYVDMSAKTKIQKLSRAMR 187
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase,
spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB:
2a7u_B
Length = 134
Score = 65.0 bits (159), Expect = 2e-14
Identities = 17/97 (17%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 1 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 60
+ + + + + ++L + + G++ NL+ ++AENG++ + V+
Sbjct: 35 AEVTKNEQMAELLSGALAPETLAESFIAVCGEQ--LDENGQNLIRVMAENGRLNALPDVL 92
Query: 61 NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLK 97
F + A V+VI+A L E +++ + ++
Sbjct: 93 EQFIHLRAVSEATAEVDVISAAALSEQQLAKISAAME 129
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.032
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 85 EEADKSELQSTLKLFA 100
E+ +LQ++LKL+A
Sbjct: 18 EKQALKKLQASLKLYA 33
Score = 24.9 bits (53), Expect = 8.9
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 26/54 (48%)
Query: 1 QALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIK 54
QALK K +Q SLK+ ++ S LA+ ++
Sbjct: 20 QALK---K---------LQASLKL-----------YADDSAPALAI---KATME 47
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A
{Staphylococcus aureus subsp} PDB: 3t07_A*
Length = 606
Score = 31.0 bits (71), Expect = 0.13
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 18/55 (32%)
Query: 45 ALLAENGK-------------IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 86
+L E I NI+ ++ +M A RGD+ VE+ P E+
Sbjct: 226 EILEEQKANISVFPKIENQEGIDNIEEILEVSDGLMVA-RGDMGVEI----PPEK 275
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A
{Pyrobaculum aerophilum}
Length = 461
Score = 31.0 bits (71), Expect = 0.13
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 53 IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 86
+ N++ ++ ++ A RGDL + L+
Sbjct: 237 VNNLEELVQCSDYVVVA-RGDLGLHY----GLDA 265
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase,
magnesium, transferase, structural genomi structural
genomics consortium; HET: CIT; 2.64A {Cryptosporidium
parvum}
Length = 534
Score = 30.7 bits (70), Expect = 0.13
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 53 IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 86
+ N D + + IM A RGDL +E+ P E+
Sbjct: 285 VINFDSICSESDGIMVA-RGDLGMEI----PPEK 313
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE
consortium, SGC, transferase; 2.70A {Plasmodium
falciparum 3D7}
Length = 520
Score = 31.0 bits (71), Expect = 0.14
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 18/55 (32%)
Query: 45 ALLAENGK-------------IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 86
LL G+ I + D ++ IM A RGDL +E+ E+
Sbjct: 250 NLLGPRGRHIKIIPKIENIEGIIHFDKILAESDGIMIA-RGDLGMEI----SPEK 299
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus
stearothermophilus}
Length = 587
Score = 31.0 bits (71), Expect = 0.14
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 53 IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 86
+ NID ++ +M A RGDL VE+ P EE
Sbjct: 228 VANIDEILEAADGLMVA-RGDLGVEI----PAEE 256
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis,
magnesium, transferase, structural genomics, STRU
genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB:
3eoe_A
Length = 511
Score = 30.6 bits (70), Expect = 0.15
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 18/55 (32%)
Query: 45 ALLAENGK-------------IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 86
LL G+ + N D ++ IM A RGDL +E+ P E+
Sbjct: 241 GLLGPRGRHIRIIPKIENVEGLVNFDEILAEADGIMIA-RGDLGMEI----PPEK 290
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase,
allosteric enzyme, binding, glycolysis, magnesium,
metal-binding, NUCL binding; 2.00A {Leishmania mexicana}
PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A*
3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Length = 499
Score = 30.3 bits (69), Expect = 0.19
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 18/55 (32%)
Query: 45 ALLAENGK-------------IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 86
L G+ ++NID +I IM A RGDL VE+ P E+
Sbjct: 225 KALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVA-RGDLGVEI----PAEK 274
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery;
1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1
PDB: 1pky_A 1e0u_A
Length = 470
Score = 30.6 bits (70), Expect = 0.19
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 53 IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 86
+ N D ++ IM A RGDL VE+ P+EE
Sbjct: 227 LNNFDEILEASDGIMVA-RGDLGVEI----PVEE 255
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET:
FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1
c.1.12.1 c.49.1.1 PDB: 1a3x_A
Length = 500
Score = 30.3 bits (69), Expect = 0.22
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 18/55 (32%)
Query: 45 ALLAENGK-------------IKNIDGVINNFSIIMAAHRGDLPVEVITARPLEE 86
+L E GK + N D ++ +M A RGDL +E+ P E
Sbjct: 226 EVLGEQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVA-RGDLGIEI----PAPE 275
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.47
Identities = 25/185 (13%), Positives = 49/185 (26%), Gaps = 71/185 (38%)
Query: 4 KTDVKFRD----FVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGV 59
K + R L + ++ + + +LL K +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHS-----MTLTPD--EVKSLLL---KYLDCR-- 314
Query: 60 INNFSIIMAAHRGDLPVEVITARPL-------------------EEADKSELQSTLKLFA 100
DLP EV+T P + + +L + ++
Sbjct: 315 -----------PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 101 K------------------KGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTD 142
+I P+I+ +I K M V +K+ KY+
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHI-------PTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 143 LLQTP 147
+ + P
Sbjct: 417 VEKQP 421
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.86
Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 42/130 (32%)
Query: 38 AASINLLALLAENGKIKNID-----------------GVINNFS--IIMAAHRGDLPVEV 78
L G I V+ + + + +RG +
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM-SIESLVEVVFYRGMT---M 1793
Query: 79 ITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIK 138
A P +E +S + A ++P G + S + + V ++
Sbjct: 1794 QVAVPRDELGRSN----YGMIA-----------INP---GRVAASFSQEALQ-YVVERVG 1834
Query: 139 KYTDLLQTPA 148
K T L
Sbjct: 1835 KRTGWLVEIV 1844
Score = 27.7 bits (61), Expect = 1.9
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 23/67 (34%)
Query: 14 LDP-TIQKSLKIEALKIV----GQKK-------NF-----------SAASINLLALLAEN 50
++P + S EAL+ V G++ N+ +++ + +
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNF 1871
Query: 51 GKIKNID 57
K++ ID
Sbjct: 1872 IKLQKID 1878
>3fk4_A Rubisco-like protein; structural genomics, target 9463A, PSI-2,
protein structure initiative; 2.00A {Bacillus cereus
atcc 14579}
Length = 414
Score = 27.3 bits (60), Expect = 2.2
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 78 VITARPLEEADKSELQSTLKLF 99
+ +PL E D L S L+++
Sbjct: 384 TLQNKPLHEVDDINLHSALQIW 405
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 26.0 bits (58), Expect = 5.7
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 87 ADKSELQSTLKLFAKKGENILLTTKV 112
AD+ ++ K + +NI++ TK
Sbjct: 224 ADRDLVKVWQKQNEYRFDNIMVNTKT 249
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 25.5 bits (57), Expect = 8.0
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 87 ADKSELQSTLKLFAKKGENILLTTKV 112
D ++ ++ K+G L TKV
Sbjct: 218 IDMEISKNFQRILQKQGFKFKLNTKV 243
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase,
metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Length = 295
Score = 25.3 bits (56), Expect = 8.2
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 11/45 (24%)
Query: 102 KGENILLTTKVDPSIIGGMIVSVGDKYVDMSVASKIKKYTDLLQT 146
KG+N+L+ T G++ K D + ++ +T
Sbjct: 149 KGDNVLINTY------SGVL-----KISDFGTSKRLAGINPCTET 182
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 25.6 bits (57), Expect = 8.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 87 ADKSELQSTLKLFAKKGENILLTTKV 112
D ++T K K+G + L+TKV
Sbjct: 222 MDGEVAKATQKFLKKQGLDFKLSTKV 247
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 25.6 bits (57), Expect = 9.0
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 87 ADKSELQSTLKLFAKKGENILLTTKV 112
D+ + K+ K+G ILL +V
Sbjct: 219 VDEQVAKEAQKILTKQGLKILLGARV 244
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 25.5 bits (57), Expect = 9.1
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 87 ADKSELQSTLKLFAKKGENILLTTKV 112
+K K KKG ++
Sbjct: 209 FEKQMAAIIKKRLKKKGVEVVTNALA 234
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 25.3 bits (55), Expect = 9.1
Identities = 9/76 (11%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 65 IIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSV 124
+ A + + + E + S ++ + ++ + +GG+IV
Sbjct: 110 LKEAIKELNEKKVRVMSN---EKTLGLIASRIEEIKSELGDVSIELGETVDTMGGVIVET 166
Query: 125 GDK--YVDMSVASKIK 138
D +D + ++++
Sbjct: 167 EDGRIRIDNTFEARME 182
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 25.2 bits (56), Expect = 9.7
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 87 ADKSELQSTLKLFAKKGENILLTTKV 112
D + K+G + TK
Sbjct: 208 GDPETAALLRRALEKEGIRVRTKTKA 233
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.353
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,172,229
Number of extensions: 124748
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 36
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.0 bits)