RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9749
         (148 letters)



>d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the
           F1F0-ATP synthase {Escherichia coli [TaxId: 562]}
          Length = 105

 Score = 36.9 bits (85), Expect = 1e-04
 Identities = 10/71 (14%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 2   ALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVIN 61
            +  + +  + +      ++L    + +    +       NL+ ++AENG++  +  V+ 
Sbjct: 36  EVTKNEQMAELLSGALAPETLAESFIAVC--GEQLDENGQNLIRVMAENGRLNALPDVLE 93

Query: 62  NFSIIMAAHRG 72
            F  + A    
Sbjct: 94  QFIHLRAVSEA 104


>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 118

 Score = 25.2 bits (55), Expect = 2.1
 Identities = 7/41 (17%), Positives = 16/41 (39%)

Query: 86  EADKSELQSTLKLFAKKGENILLTTKVDPSIIGGMIVSVGD 126
           E     + S ++    +  ++ +        +GG+IV   D
Sbjct: 48  EKTLGLIASRIEEIKSELGDVSIELGETVDTMGGVIVETED 88


>d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA
          {Thermotoga maritima [TaxId: 2336]}
          Length = 332

 Score = 23.8 bits (51), Expect = 9.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 73 DLPVEVITARPLEEADKSEL 92
          +LP E+I   P+E  D S L
Sbjct: 6  ELPPELIAQEPVEPRDASRL 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.353 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 510,956
Number of extensions: 22068
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 6
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.9 bits)