Query psy9750
Match_columns 90
No_of_seqs 104 out of 204
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 18:37:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3619|consensus 99.9 1.3E-27 2.7E-32 192.8 9.7 90 1-90 20-114 (867)
2 KOG3618|consensus 99.5 9.4E-14 2E-18 112.1 7.7 89 2-90 230-342 (1318)
3 PF07701 HNOBA: Heme NO bindin 97.1 0.0041 8.8E-08 44.2 8.1 53 14-66 167-219 (219)
4 KOG3619|consensus 94.8 0.19 4.2E-06 42.2 8.1 54 13-66 580-633 (867)
5 KOG4171|consensus 93.5 0.3 6.6E-06 40.0 6.6 37 34-70 397-433 (671)
6 KOG3618|consensus 89.4 0.34 7.3E-06 41.0 2.8 62 9-70 1014-1075(1318)
7 smart00044 CYCc Adenylyl- / gu 76.9 4.3 9.3E-05 27.1 3.6 25 46-70 2-26 (194)
8 KOG1023|consensus 67.2 28 0.00062 27.7 6.6 32 40-71 257-288 (484)
9 PF06840 DUF1241: Protein of u 52.2 31 0.00067 23.5 4.0 32 11-42 99-130 (154)
10 KOG4025|consensus 40.8 43 0.00093 23.5 3.3 30 14-43 106-135 (207)
11 PF12196 hNIFK_binding: FHA Ki 25.7 76 0.0016 16.9 2.0 14 28-41 13-26 (41)
12 PF08565 CDC37_M: Cdc37 Hsp90 24.9 2.3E+02 0.005 19.3 5.6 42 11-52 125-169 (173)
13 PF14841 FliG_M: FliG middle d 23.4 89 0.0019 18.3 2.3 29 43-71 9-37 (79)
14 PRK00888 ftsB cell division pr 23.3 2E+02 0.0043 17.9 6.7 48 6-53 6-53 (105)
15 KOG3976|consensus 22.3 3.2E+02 0.007 20.0 5.8 25 47-71 208-232 (247)
16 PF05189 RTC_insert: RNA 3'-te 21.7 65 0.0014 19.6 1.5 28 57-84 17-44 (103)
17 PHA03049 IMV membrane protein; 20.8 1.6E+02 0.0035 17.3 2.9 21 1-21 1-22 (68)
18 COG1862 YajC Preprotein transl 20.6 2.3E+02 0.005 17.7 4.5 28 6-33 10-37 (97)
19 PRK10772 cell division protein 20.6 2.4E+02 0.0053 17.9 7.1 44 5-49 27-70 (108)
20 PF10300 DUF3808: Protein of u 20.5 77 0.0017 24.8 2.0 16 52-67 181-196 (468)
21 PF07609 DUF1572: Protein of u 20.2 90 0.0019 21.3 2.0 21 2-22 44-64 (163)
No 1
>KOG3619|consensus
Probab=99.95 E-value=1.3e-27 Score=192.81 Aligned_cols=90 Identities=59% Similarity=0.951 Sum_probs=85.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhhhccc-----c
Q psy9750 1 MVANMVVLVGGNIIGILLHTMMEHAQRKAFLDTRNCIAARLEMEDENEKLERLLLSVLPQHVAMEMKNDIISPV-----E 75 (90)
Q Consensus 1 ~~a~~~~~~c~n~~G~~~~~~~e~~~R~tfl~~~~~i~~r~~l~~e~~qqe~LLlSvLP~~iA~e~~~di~~~~-----~ 75 (90)
++||+++|+|+|++|+|+++|+|.++|++|++|++|++.|++++.|++|||+||+||||+|+|++|++||.++. +
T Consensus 20 l~an~~~~~~~nl~G~~~~~~~e~~~r~~f~~~~~~i~~r~~l~~~~~~qerlllsvlp~~va~~m~~~i~~~~~~~~~~ 99 (867)
T KOG3619|consen 20 LLANAVLFLCINLVGIFTKYMMERAQRQAFLETRKCIEVRMELETEKQQQERLLLSVLPAHVAMEMKKDIIESSARCKND 99 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcchhh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999998762 2
Q ss_pred ccccccceeecCCCC
Q psy9750 76 GQFHKIYIQRHENVR 90 (90)
Q Consensus 76 ~~f~~lyi~rh~nVs 90 (90)
.+||+|||++|+|||
T Consensus 100 ~~f~~iy~~~h~nVS 114 (867)
T KOG3619|consen 100 NQFHKLYIQRHDNVS 114 (867)
T ss_pred hccchhheeeccchH
Confidence 389999999999998
No 2
>KOG3618|consensus
Probab=99.48 E-value=9.4e-14 Score=112.11 Aligned_cols=89 Identities=28% Similarity=0.397 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhhhcccc------
Q psy9750 2 VANMVVLVGGNIIGILLHTMMEHAQRKAFLDTRNCIAARLEMEDENEKLERLLLSVLPQHVAMEMKNDIISPVE------ 75 (90)
Q Consensus 2 ~a~~~~~~c~n~~G~~~~~~~e~~~R~tfl~~~~~i~~r~~l~~e~~qqe~LLlSvLP~~iA~e~~~di~~~~~------ 75 (90)
+...+++.|++++|++..+|+.+++|+||++..|.+..|.+||.|++-+|++++||+|+.||+++.++-..+.+
T Consensus 230 ~~r~~lH~~vHliGVHlfim~qVR~R~TFlKVGQs~l~rkdLE~EkqlKe~MIhSVMP~kvAD~Llk~g~~pS~nd~~~~ 309 (1318)
T KOG3618|consen 230 LSRGLLHGCVHLIGVHLFIMSQVRSRSTFLKVGQSILHRKDLEVEKQLKERMIHSVMPRKVADDLLKQGDEPSENDVKRH 309 (1318)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHhhHHHHhhhhhHHHHHHHHHHHHhhcChHHHHHHHhhcCCCCcccccCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999988753210
Q ss_pred ----------------c--cccccceeecCCCC
Q psy9750 76 ----------------G--QFHKIYIQRHENVR 90 (90)
Q Consensus 76 ----------------~--~f~~lyi~rh~nVs 90 (90)
. .|+++.|+..+|||
T Consensus 310 ~~~s~~~r~~~s~~vk~~~~FRPF~M~~menVS 342 (1318)
T KOG3618|consen 310 ATSSPKNRKKKSSIVKAPIAFRPFKMQQMENVS 342 (1318)
T ss_pred CCCCcccccchhhccccccccCchhhhhhhhhh
Confidence 0 49999999999998
No 3
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.
Probab=97.14 E-value=0.0041 Score=44.16 Aligned_cols=53 Identities=25% Similarity=0.318 Sum_probs=38.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Q psy9750 14 IGILLHTMMEHAQRKAFLDTRNCIAARLEMEDENEKLERLLLSVLPQHVAMEM 66 (90)
Q Consensus 14 ~G~~~~~~~e~~~R~tfl~~~~~i~~r~~l~~e~~qqe~LLlSvLP~~iA~e~ 66 (90)
+|.......+...+.....+.+.=+...+++.|+++-+.||.|+||+.||..+
T Consensus 167 ~~~q~~a~~~l~~~le~~~~~~Le~~~~~l~~ek~ktd~LL~~mlP~~VA~~L 219 (219)
T PF07701_consen 167 LGQQQSAELKLAKQLEQEKSAELEESMRELEEEKKKTDELLYSMLPPSVADRL 219 (219)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhhC
Confidence 44555555555555555556666677889999999999999999999999864
No 4
>KOG3619|consensus
Probab=94.84 E-value=0.19 Score=42.23 Aligned_cols=54 Identities=28% Similarity=0.295 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Q psy9750 13 IIGILLHTMMEHAQRKAFLDTRNCIAARLEMEDENEKLERLLLSVLPQHVAMEM 66 (90)
Q Consensus 13 ~~G~~~~~~~e~~~R~tfl~~~~~i~~r~~l~~e~~qqe~LLlSvLP~~iA~e~ 66 (90)
++-.++-...|..-|-.|+=.-|.-+++-..|.-.+.++.||..|||.|||.-.
T Consensus 580 l~l~~~~Rq~E~~~RlDFLWk~q~~~E~ee~e~m~~~Nr~LLeNiLPaHVA~HF 633 (867)
T KOG3619|consen 580 LALLLHARQVEYTARLDFLWKVQAQEEKEEMETMQNLNRLLLENILPSHVAAHF 633 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 345566677999999999999999999999999999999999999999999855
No 5
>KOG4171|consensus
Probab=93.54 E-value=0.3 Score=39.97 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhh
Q psy9750 34 RNCIAARLEMEDENEKLERLLLSVLPQHVAMEMKNDI 70 (90)
Q Consensus 34 ~~~i~~r~~l~~e~~qqe~LLlSvLP~~iA~e~~~di 70 (90)
.+.=++--.|+.||+|-..||.|+||+.||.+|+..-
T Consensus 397 ~~Le~~~~~Le~EKkkTd~LLy~mlP~~VA~qLr~g~ 433 (671)
T KOG4171|consen 397 EKLEKMTRELEEEKKKTDTLLYSMLPRSVAQQLRQGE 433 (671)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHcCC
Confidence 3344556678899999999999999999999999653
No 6
>KOG3618|consensus
Probab=89.42 E-value=0.34 Score=40.95 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhh
Q psy9750 9 VGGNIIGILLHTMMEHAQRKAFLDTRNCIAARLEMEDENEKLERLLLSVLPQHVAMEMKNDI 70 (90)
Q Consensus 9 ~c~n~~G~~~~~~~e~~~R~tfl~~~~~i~~r~~l~~e~~qqe~LLlSvLP~~iA~e~~~di 70 (90)
+-.-++-.|...--|.+.|-+|...-+.=..+-+++.-+.|-.-||..|+|.|+|..+|.+-
T Consensus 1014 ~L~lvLVwFLNreFE~~yRl~f~Gdv~A~~d~~riQ~mrdQADwLL~NiIP~HvaE~LK~~~ 1075 (1318)
T KOG3618|consen 1014 FLLLVLVWFLNREFEVSYRLHFHGDVEADLDRTRIQSMRDQADWLLRNIIPYHVAEQLKVSQ 1075 (1318)
T ss_pred HHHHHHHHHhhhheeeeEEEEEecchhhchhHHHHHHHHHHHHHHHhccchHHHHHHhhccc
Confidence 33444667777888999999999988888889999999999999999999999999999875
No 7
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=76.93 E-value=4.3 Score=27.09 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhhh
Q psy9750 46 ENEKLERLLLSVLPQHVAMEMKNDI 70 (90)
Q Consensus 46 e~~qqe~LLlSvLP~~iA~e~~~di 70 (90)
|+++-++||..++|+.|+..+....
T Consensus 2 ~~~~~~~ll~~~lP~~v~~~l~~g~ 26 (194)
T smart00044 2 EKRKTDRLLDQLLPASVAESLKRGG 26 (194)
T ss_pred hHHHHHHHHHHhCCHHHHHHHHhCC
Confidence 6788899999999999999999875
No 8
>KOG1023|consensus
Probab=67.16 E-value=28 Score=27.70 Aligned_cols=32 Identities=34% Similarity=0.459 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHhhhh
Q psy9750 40 RLEMEDENEKLERLLLSVLPQHVAMEMKNDII 71 (90)
Q Consensus 40 r~~l~~e~~qqe~LLlSvLP~~iA~e~~~di~ 71 (90)
...++.|+++-+.||.-.||+.||.+++....
T Consensus 257 t~~l~~e~~k~d~LL~~mLP~~VA~~lk~G~~ 288 (484)
T KOG1023|consen 257 TAELEEEKKKTDTLLGQMLPKSVAESLKLGKT 288 (484)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHhhHhhcCCc
Confidence 45677899999999999999999999997653
No 9
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=52.21 E-value=31 Score=23.46 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy9750 11 GNIIGILLHTMMEHAQRKAFLDTRNCIAARLE 42 (90)
Q Consensus 11 ~n~~G~~~~~~~e~~~R~tfl~~~~~i~~r~~ 42 (90)
..+--+-.+++-|+.-|++|++|-+-|-+-++
T Consensus 99 ~~LK~iLSrIPdei~dR~~FL~tIK~IAsaIK 130 (154)
T PF06840_consen 99 TALKRILSRIPDEISDRRTFLETIKEIASAIK 130 (154)
T ss_dssp HHHHHHHHTHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHhhcchHHHHHHHHHHHHHHH
Confidence 34455667889999999999999999988776
No 10
>KOG4025|consensus
Probab=40.80 E-value=43 Score=23.46 Aligned_cols=30 Identities=33% Similarity=0.331 Sum_probs=24.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy9750 14 IGILLHTMMEHAQRKAFLDTRNCIAARLEM 43 (90)
Q Consensus 14 ~G~~~~~~~e~~~R~tfl~~~~~i~~r~~l 43 (90)
--+..+++-|+.-|.+|++|-+.|-+-++-
T Consensus 106 k~iLSriPdEinDR~~FLeTIK~IASaIKk 135 (207)
T KOG4025|consen 106 KRILSRIPDEINDRHAFLETIKLIASAIKK 135 (207)
T ss_pred HHHHHhCcHhhhhHHHHHHHHHHHHHHHHH
Confidence 345667888999999999999999887763
No 11
>PF12196 hNIFK_binding: FHA Ki67 binding domain of hNIFK; InterPro: IPR021043 This entry represents eukaryotic proteins that contain a domain of approximately 40 amino acids in length. These proteins are found in association with PF00076 from PFAM. There are two conserved sequence motifs: TPVCTP and LERRKS. This domain is found on the human nucleolar protein hNIFK. It binds to the fork-head-associated domain of human Ki67. High-affinity binding requires sequential phosphorylation by two kinases, CDK1 and GSK3, yielding pThr238, pThr234 and pSer230. This interaction is involved in cell cycle regulation []. ; PDB: 2AFF_B.
Probab=25.66 E-value=76 Score=16.86 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHH
Q psy9750 28 KAFLDTRNCIAARL 41 (90)
Q Consensus 28 ~tfl~~~~~i~~r~ 41 (90)
.|||++|++....+
T Consensus 13 ptfLErRKS~~~em 26 (41)
T PF12196_consen 13 PTFLERRKSEVAEM 26 (41)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred HHHHHHhhhhhhcc
Confidence 48999998875544
No 12
>PF08565 CDC37_M: Cdc37 Hsp90 binding domain; InterPro: IPR013874 Cdc37 is a molecular chaperone required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the Hsp90 chaperone (heat shock protein 90) binding domain of Cdc37 []. It is found between the N-terminal Cdc37 domain IPR013855 from INTERPRO, which is predominantly involved in kinase binding, and the C-terminal domain of Cdc37 IPR013873 from INTERPRO whose function is unclear. ; PDB: 1US7_B 2W0G_A 2K5B_B.
Probab=24.94 E-value=2.3e+02 Score=19.33 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9750 11 GNIIGILLHTMME---HAQRKAFLDTRNCIAARLEMEDENEKLER 52 (90)
Q Consensus 11 ~n~~G~~~~~~~e---~~~R~tfl~~~~~i~~r~~l~~e~~qqe~ 52 (90)
-+.++.|+.-+.. -.-+..|.+.-+....|++-+.+-..+|+
T Consensus 125 r~~v~~FF~r~~~~~~~~~~~~F~~dv~~~~~rIk~Ra~~~~~E~ 169 (173)
T PF08565_consen 125 RDGVRLFFKRIKTPGHPEAKKVFEDDVEAFYERIKERAKEKMEEQ 169 (173)
T ss_dssp GGCHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777766 33689999998888888888866665553
No 13
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=23.42 E-value=89 Score=18.28 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHhhhh
Q psy9750 43 MEDENEKLERLLLSVLPQHVAMEMKNDII 71 (90)
Q Consensus 43 l~~e~~qqe~LLlSvLP~~iA~e~~~di~ 71 (90)
|+.|.-|=-.+++|-||+..|.++...+.
T Consensus 9 L~~EhPq~iAliLs~L~~~~AA~VL~~lp 37 (79)
T PF14841_consen 9 LKDEHPQTIALILSYLPPEQAAEVLSQLP 37 (79)
T ss_dssp HTTS-HHHHHHHHHTS-HHHHHHHHHTS-
T ss_pred HHhcCHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 45677777889999999999988876654
No 14
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=23.32 E-value=2e+02 Score=17.94 Aligned_cols=48 Identities=6% Similarity=-0.067 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9750 6 VVLVGGNIIGILLHTMMEHAQRKAFLDTRNCIAARLEMEDENEKLERL 53 (90)
Q Consensus 6 ~~~~c~n~~G~~~~~~~e~~~R~tfl~~~~~i~~r~~l~~e~~qqe~L 53 (90)
++++++++.-.|.-+..+...++...-..+.-..+-.++.-+++++.|
T Consensus 6 ~vll~ll~~l~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L 53 (105)
T PRK00888 6 LLLLALLVWLQYSLWFGKNGILDYWRVNDQVAAQQQTNAKLKARNDQL 53 (105)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555545555555444433333333333333333333333333333
No 15
>KOG3976|consensus
Probab=22.28 E-value=3.2e+02 Score=20.03 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhccHHHHHHHHhhhh
Q psy9750 47 NEKLERLLLSVLPQHVAMEMKNDII 71 (90)
Q Consensus 47 ~~qqe~LLlSvLP~~iA~e~~~di~ 71 (90)
+.+||+|+.||.|+.--...-+.+.
T Consensus 208 r~eqe~l~ksI~~~veke~~~k~fq 232 (247)
T KOG3976|consen 208 RLEQEQLLKSINSRVEKETSNKKFQ 232 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4569999999999655444444443
No 16
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=21.68 E-value=65 Score=19.64 Aligned_cols=28 Identities=25% Similarity=0.159 Sum_probs=17.8
Q ss_pred hccHHHHHHHHhhhhcccccccccccee
Q psy9750 57 VLPQHVAMEMKNDIISPVEGQFHKIYIQ 84 (90)
Q Consensus 57 vLP~~iA~e~~~di~~~~~~~f~~lyi~ 84 (90)
=||++||..|.+.....+......++|.
T Consensus 17 ~lp~~va~R~~~~a~~~L~~~~~~v~i~ 44 (103)
T PF05189_consen 17 GLPSSVAERMANAARKRLNWYGPDVEIE 44 (103)
T ss_dssp SS-CHHHHHHHHHHHHHHCTTCSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhhhhCCCeEEE
Confidence 4699999999988876553333344443
No 17
>PHA03049 IMV membrane protein; Provisional
Probab=20.82 E-value=1.6e+02 Score=17.30 Aligned_cols=21 Identities=19% Similarity=0.574 Sum_probs=13.3
Q ss_pred ChhHHHHH-HHHHHHHHHHHHH
Q psy9750 1 MVANMVVL-VGGNIIGILLHTM 21 (90)
Q Consensus 1 ~~a~~~~~-~c~n~~G~~~~~~ 21 (90)
+++++++. +|+-++|+..+-.
T Consensus 1 MI~d~~l~iICVaIi~lIvYgi 22 (68)
T PHA03049 1 MIGDIILVIICVVIIGLIVYGI 22 (68)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 34555544 8988888766543
No 18
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=20.59 E-value=2.3e+02 Score=17.67 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy9750 6 VVLVGGNIIGILLHTMMEHAQRKAFLDT 33 (90)
Q Consensus 6 ~~~~c~n~~G~~~~~~~e~~~R~tfl~~ 33 (90)
..++..-++++.++++.-+-||+...++
T Consensus 10 ~~ll~~vl~~~ifyFli~RPQrKr~K~~ 37 (97)
T COG1862 10 VLLLPLVLIFAIFYFLIIRPQRKRMKEH 37 (97)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 3444555566677777766666544333
No 19
>PRK10772 cell division protein FtsL; Provisional
Probab=20.57 E-value=2.4e+02 Score=17.93 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9750 5 MVVLVGGNIIGILLHTMMEHAQRKAFLDTRNCIAARLEMEDENEK 49 (90)
Q Consensus 5 ~~~~~c~n~~G~~~~~~~e~~~R~tfl~~~~~i~~r~~l~~e~~q 49 (90)
+++++++ +++.+.-..+....|+.|.+-.+...++-.|+.|..+
T Consensus 27 l~Ll~~v-v~SAl~VV~~~h~tR~l~~ele~l~~e~~~Le~Ew~~ 70 (108)
T PRK10772 27 LCLFIAV-IVSAVTVVTTAHHTRLLTAEREQLVLERDALDIEWRN 70 (108)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433 4444555556677799999988888888888877764
No 20
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=20.51 E-value=77 Score=24.77 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=12.7
Q ss_pred HHHHhhccHHHHHHHH
Q psy9750 52 RLLLSVLPQHVAMEMK 67 (90)
Q Consensus 52 ~LLlSvLP~~iA~e~~ 67 (90)
+|++|+|||.+..-+.
T Consensus 181 ~L~lSlLPp~~~kll~ 196 (468)
T PF10300_consen 181 NLVLSLLPPKVLKLLS 196 (468)
T ss_pred HHHHHhCCHHHHHHHh
Confidence 5779999999976554
No 21
>PF07609 DUF1572: Protein of unknown function (DUF1572); InterPro: IPR011466 This protein represents proteins with unknown function found in several diverse bacteria.
Probab=20.19 E-value=90 Score=21.33 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy9750 2 VANMVVLVGGNIIGILLHTMM 22 (90)
Q Consensus 2 ~a~~~~~~c~n~~G~~~~~~~ 22 (90)
+|+.+.++|+|+.+-...+++
T Consensus 44 ia~l~~HL~GNm~srw~~fl~ 64 (163)
T PF07609_consen 44 IANLVLHLSGNMNSRWTDFLT 64 (163)
T ss_pred HHHHHHHhhccHHHHHHHHhC
Confidence 578999999999988877665
Done!