Query psy9750
Match_columns 90
No_of_seqs 104 out of 204
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 18:37:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9750.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9750hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hls_A Guanylate cyclase solub 97.6 0.00059 2E-08 39.3 8.1 35 34-68 31-65 (66)
2 1y10_A Hypothetical protein RV 81.6 4.1 0.00014 30.3 6.3 53 19-71 132-195 (407)
3 1azs_A VC1; complex (lyase/hyd 59.2 1.5 5.1E-05 29.7 -0.6 30 61-90 6-36 (220)
4 3ajm_A Programmed cell death p 41.6 33 0.0011 23.6 3.9 34 10-43 100-133 (213)
5 4hpq_C ATG17, KLTH0D15642P; au 30.0 1.7E+02 0.0059 21.8 7.4 37 8-44 329-365 (413)
6 2lat_A Dolichyl-diphosphooligo 26.8 51 0.0018 16.4 2.2 20 2-21 2-21 (37)
7 2ljb_A M2 protein, BM2 protein 21.0 87 0.003 15.3 2.5 15 7-21 9-23 (35)
8 1us7_B HSP90 CO-chaperone CDC3 16.6 2.6E+02 0.0089 19.6 4.9 41 12-52 119-161 (265)
9 2kwh_A RAla-binding protein 1; 14.7 1.4E+02 0.0048 16.1 2.4 16 42-57 7-22 (56)
10 3lhr_A Zinc finger protein 24; 14.0 1.6E+02 0.0056 17.2 2.9 42 26-69 23-72 (93)
No 1
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=97.63 E-value=0.00059 Score=39.29 Aligned_cols=35 Identities=37% Similarity=0.490 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHh
Q psy9750 34 RNCIAARLEMEDENEKLERLLLSVLPQHVAMEMKN 68 (90)
Q Consensus 34 ~~~i~~r~~l~~e~~qqe~LLlSvLP~~iA~e~~~ 68 (90)
.+.=+..-.++.|+++-+.||.|+||+.||..++.
T Consensus 31 ~~Lee~t~~L~~EK~ktd~LL~~mLP~~VA~~Lk~ 65 (66)
T 3hls_A 31 DRLQLTLRALEDEKKKTDTLLYSVLPPSVANELRH 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhC
Confidence 33445567788999999999999999999999874
No 2
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=81.61 E-value=4.1 Score=30.32 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=34.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcc-------HHHHHHHHhhhh
Q psy9750 19 HTMMEHAQRKAFLDTRNCIAA----RLEMEDENEKLERLLLSVLP-------QHVAMEMKNDII 71 (90)
Q Consensus 19 ~~~~e~~~R~tfl~~~~~i~~----r~~l~~e~~qqe~LLlSvLP-------~~iA~e~~~di~ 71 (90)
+.+.+...|-+-+.+...++. +.....++++.|+||.++|| +.||..++....
T Consensus 132 R~lg~~~~Rla~wq~~~~le~l~~~~~~~~ee~~kse~LL~~iLP~L~~~l~~~va~~L~~~~~ 195 (407)
T 1y10_A 132 RVLAEGLSHAAEAMRYTALEAIMRPGATELDIAKGSQALVSQIVPLLGPMIQDMLFMQLRHMME 195 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcHhHHHHHHHHHHHhcccccccchHHHHHHHHhccc
Confidence 334444444444444333222 23456788999999999999 899999887653
No 3
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*
Probab=59.15 E-value=1.5 Score=29.65 Aligned_cols=30 Identities=60% Similarity=0.863 Sum_probs=12.4
Q ss_pred HHHHHHHhhhhccc-cccccccceeecCCCC
Q psy9750 61 HVAMEMKNDIISPV-EGQFHKIYIQRHENVR 90 (90)
Q Consensus 61 ~iA~e~~~di~~~~-~~~f~~lyi~rh~nVs 90 (90)
|-|+|||.++.... +..|+++|...+.+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vt 36 (220)
T 1azs_A 6 HHAMEMKADINAKQEDMMFHKIYIQKHDNVS 36 (220)
T ss_dssp ---------------CCSSCCCEEEEEEEEE
T ss_pred hhhHhhhccccccccccccccccccccccEE
Confidence 56899999997654 4489999998877653
No 4
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=41.62 E-value=33 Score=23.55 Aligned_cols=34 Identities=26% Similarity=0.220 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy9750 10 GGNIIGILLHTMMEHAQRKAFLDTRNCIAARLEM 43 (90)
Q Consensus 10 c~n~~G~~~~~~~e~~~R~tfl~~~~~i~~r~~l 43 (90)
...+--+-.+++.|+.-|++|++|-+-|-+-++.
T Consensus 100 A~~LK~iLSrIPdEI~dR~~FL~tIKeIAsaIKk 133 (213)
T 3ajm_A 100 ARALKQILSKIPDEINDRVRFLQTIKDIASAIKE 133 (213)
T ss_dssp HHHHHHHHHTHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchhhcchHHHHHHHHHHHHHHHH
Confidence 3455667788999999999999999998887763
No 5
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=30.02 E-value=1.7e+02 Score=21.78 Aligned_cols=37 Identities=16% Similarity=0.003 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy9750 8 LVGGNIIGILLHTMMEHAQRKAFLDTRNCIAARLEME 44 (90)
Q Consensus 8 ~~c~n~~G~~~~~~~e~~~R~tfl~~~~~i~~r~~l~ 44 (90)
.+-.+...+|..++.|+..|+++.+.-.-+..+..-+
T Consensus 329 ~~Y~~f~~aY~~lL~Ev~RRr~~~~~~~~i~~~~~~~ 365 (413)
T 4hpq_C 329 DFYANFERSYHNLLKEVKRRKETAAKLSQILKSCETQ 365 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999988877776544433
No 6
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=26.77 E-value=51 Score=16.39 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy9750 2 VANMVVLVGGNIIGILLHTM 21 (90)
Q Consensus 2 ~a~~~~~~c~n~~G~~~~~~ 21 (90)
+++.-++..+|.+|++.-.+
T Consensus 2 IsD~qL~~lan~lG~~~~~L 21 (37)
T 2lat_A 2 ITDVQLAIFANMLGVSLFLL 21 (37)
T ss_dssp CSCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 45666788888888876554
No 7
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=21.00 E-value=87 Score=15.26 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy9750 7 VLVGGNIIGILLHTM 21 (90)
Q Consensus 7 ~~~c~n~~G~~~~~~ 21 (90)
+-+|+|++|+.+..+
T Consensus 9 lviaA~IigiLHlil 23 (35)
T 2ljb_A 9 LVVAASIIGILHFIA 23 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 457899999987655
No 8
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation, ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP: a.205.1.1 PDB: 2k5b_B 2w0g_A
Probab=16.62 E-value=2.6e+02 Score=19.62 Aligned_cols=41 Identities=7% Similarity=0.077 Sum_probs=29.6
Q ss_pred HHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9750 12 NIIGILLHTMM--EHAQRKAFLDTRNCIAARLEMEDENEKLER 52 (90)
Q Consensus 12 n~~G~~~~~~~--e~~~R~tfl~~~~~i~~r~~l~~e~~qqe~ 52 (90)
+.++.||.-+. +-.-+..|.+.-+....|++-+.+...+|+
T Consensus 119 ~~v~~FF~ki~~~~~~~~~~F~ddV~~~~~RIk~Ra~~~~~e~ 161 (265)
T 1us7_B 119 ACFRQFFTKIKTADRQYMEGFNDELEAFKERVRGRAKLRIEKA 161 (265)
T ss_dssp GTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777774 566788999888888888888766554443
No 9
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=14.68 E-value=1.4e+02 Score=16.13 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhh
Q psy9750 42 EMEDENEKLERLLLSV 57 (90)
Q Consensus 42 ~l~~e~~qqe~LLlSv 57 (90)
.++.|-.+||.||..+
T Consensus 7 ~I~~El~kQe~lL~~L 22 (56)
T 2kwh_A 7 GIKEEIRRQEFLLNSL 22 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566778888888544
No 10
>3lhr_A Zinc finger protein 24; SCAN domain, protein structure initiative, center for eukary structural genomics, PSI-2, CESG, nucleus, phosphoprotein; 1.90A {Homo sapiens} SCOP: a.28.3.0
Probab=14.00 E-value=1.6e+02 Score=17.23 Aligned_cols=42 Identities=24% Similarity=0.423 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhccHHHHHHHHhh
Q psy9750 26 QRKAFLDTRNCIAARLEMEDENEKLERLL--------LSVLPQHVAMEMKND 69 (90)
Q Consensus 26 ~R~tfl~~~~~i~~r~~l~~e~~qqe~LL--------lSvLP~~iA~e~~~d 69 (90)
.|.++..-+..- +.+|+-|.+-.|++| ++|||+-+-..++..
T Consensus 23 p~eal~~L~eLc--~~WLrPe~htKEQileLLVLEQFL~ilP~e~q~wv~~~ 72 (93)
T 3lhr_A 23 PREAVSQLRELC--RLWLRPETHTKEQILELVVLEQFVAILPKELQTWVRDH 72 (93)
T ss_dssp HHHHHHHHHHHH--HHHHCTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHH--HHhcCcccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 344444444443 455665555556654 899999888777654
Done!