Query psy9750
Match_columns 90
No_of_seqs 104 out of 204
Neff 7.0
Searched_HMMs 13730
Date Fri Aug 16 18:37:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9750.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9750hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pp7u_ a.4.5.44 (U:) 39 kda i 50.2 3.3 0.00024 24.3 1.5 23 51-73 3-25 (114)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 39.0 15 0.0011 16.0 2.6 16 2-19 4-19 (30)
3 d2j01i1 d.99.1.1 (I:56-146) Ri 26.5 14 0.001 20.2 1.5 39 52-90 32-82 (91)
4 d1qmha1 c.47.2.1 (A:185-279) R 16.0 33 0.0024 18.7 1.6 16 58-73 17-32 (95)
5 d1e0ea_ a.4.10.1 (A:) N-termin 13.1 52 0.0038 15.7 1.7 13 57-69 27-39 (46)
6 d1diva1 d.99.1.1 (A:56-149) Ri 11.7 40 0.0029 18.3 1.1 39 52-90 33-83 (94)
7 d1us7b_ a.205.1.1 (B:) Hsp90 c 10.3 1.9E+02 0.014 17.8 7.3 41 12-52 85-127 (201)
8 d1k6ya1 a.4.10.1 (A:1-46) N-te 9.5 82 0.006 15.0 1.7 12 58-69 28-39 (46)
9 d1a7ge_ d.58.8.1 (E:) Papillom 9.0 68 0.0049 17.2 1.4 11 23-33 56-66 (82)
10 d2q79a1 d.58.8.1 (A:284-362) P 8.8 70 0.0051 17.0 1.4 11 23-33 54-64 (79)
No 1
>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}
Probab=50.22 E-value=3.3 Score=24.34 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=18.6
Q ss_pred HHHHHhhccHHHHHHHHhhhhcc
Q psy9750 51 ERLLLSVLPQHVAMEMKNDIISP 73 (90)
Q Consensus 51 e~LLlSvLP~~iA~e~~~di~~~ 73 (90)
|.-+.+=+|+.|+.++++-....
T Consensus 3 ~~~~~~~ip~~i~~~l~kr~s~~ 25 (114)
T d1pp7u_ 3 EASFTSRLPPEIVAALKRKSSRD 25 (114)
T ss_dssp HHHHHTTSCHHHHHHHHSCCCSS
T ss_pred cchhhhhCCHHHHHHHHHhhCCC
Confidence 44578889999999999887654
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=38.97 E-value=15 Score=16.04 Aligned_cols=16 Identities=6% Similarity=0.291 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy9750 2 VANMVVLVGGNIIGILLH 19 (90)
Q Consensus 2 ~a~~~~~~c~n~~G~~~~ 19 (90)
++.+++|.|. +|+|+.
T Consensus 4 i~yv~ifac~--i~lfff 19 (30)
T d2axtt1 4 ITYVFIFACI--IALFFF 19 (30)
T ss_dssp HHHHHHHHHH--HHHHHH
T ss_pred eehHHHHHHH--HHHHHH
Confidence 4678889997 666654
No 3
>d2j01i1 d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain {Thermus thermophilus [TaxId: 274]}
Probab=26.54 E-value=14 Score=20.19 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=27.5
Q ss_pred HHHHhhccHHHHHHHHhhhhcccc-------c-----cccccceeecCCCC
Q psy9750 52 RLLLSVLPQHVAMEMKNDIISPVE-------G-----QFHKIYIQRHENVR 90 (90)
Q Consensus 52 ~LLlSvLP~~iA~e~~~di~~~~~-------~-----~f~~lyi~rh~nVs 90 (90)
+|.=||=|..||..+.+...-.++ + .-|++-|+-|++|+
T Consensus 32 kLfGSVt~~dIa~~l~~~~g~~Idk~~I~l~~~IK~~G~~~v~i~L~~~V~ 82 (91)
T d2j01i1 32 KIYGSVTAKDIAEALSRQHGVTIDPKRLALEKPIKELGEYVLTYKPHPEVP 82 (91)
T ss_dssp SBSSCCCHHHHHHHHHTTTCCCCCTTTTCCSSCCCSCEEEECCCSSSSCCC
T ss_pred ceecccCHHHHHHHHHhccCceechHHhhccccccceEEEEEEEEecCCEE
Confidence 467799999999999865322211 1 34778888899885
No 4
>d1qmha1 c.47.2.1 (A:185-279) RNA 3'-terminal phosphate cyclase, RPTC, insert domain {Escherichia coli [TaxId: 562]}
Probab=16.05 E-value=33 Score=18.73 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=13.0
Q ss_pred ccHHHHHHHHhhhhcc
Q psy9750 58 LPQHVAMEMKNDIISP 73 (90)
Q Consensus 58 LP~~iA~e~~~di~~~ 73 (90)
||.+||..|.+.....
T Consensus 17 LP~~Va~R~~~~a~~~ 32 (95)
T d1qmha1 17 VPRHVAEREIATLAGS 32 (95)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH
Confidence 8999999998776544
No 5
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=13.10 E-value=52 Score=15.74 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=9.9
Q ss_pred hccHHHHHHHHhh
Q psy9750 57 VLPQHVAMEMKND 69 (90)
Q Consensus 57 vLP~~iA~e~~~d 69 (90)
=||+-+|.++-..
T Consensus 27 ~lp~~vAr~IV~~ 39 (46)
T d1e0ea_ 27 GIPNLVARQIVNS 39 (46)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4889999888653
No 6
>d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.73 E-value=40 Score=18.26 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=26.1
Q ss_pred HHHHhhccHHHHHHHHhhhhccc-------cc-----cccccceeecCCCC
Q psy9750 52 RLLLSVLPQHVAMEMKNDIISPV-------EG-----QFHKIYIQRHENVR 90 (90)
Q Consensus 52 ~LLlSvLP~~iA~e~~~di~~~~-------~~-----~f~~lyi~rh~nVs 90 (90)
+|.=||=|..||..+.....-.+ ++ .-|++-|+-|++|+
T Consensus 33 kLfGSVt~~dI~~~l~~~~g~~idk~~I~l~~~IK~~G~y~v~i~Lh~~V~ 83 (94)
T d1diva1 33 RLFGSITSKQIAESLQAQHGLKLDKRKIELADAIRALGYTNVPVKLHPEVT 83 (94)
T ss_dssp EEEEEECHHHHHHHHHHHHCCCCCGGGBCCCSCEEESEEEEEEEEEETTEE
T ss_pred eeEecccHHHHHHHHHHccCceecHHHhhccCchhhcEeEEEEEEecCCeE
Confidence 46678999999999975432111 11 34778888888874
No 7
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.30 E-value=1.9e+02 Score=17.75 Aligned_cols=41 Identities=7% Similarity=0.077 Sum_probs=31.0
Q ss_pred HHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9750 12 NIIGILLHTMM--EHAQRKAFLDTRNCIAARLEMEDENEKLER 52 (90)
Q Consensus 12 n~~G~~~~~~~--e~~~R~tfl~~~~~i~~r~~l~~e~~qqe~ 52 (90)
+.++.|+.-+. +..-+.+|.+.-+....|++-+.+-..+|.
T Consensus 85 ~~v~~FF~ki~~~~~~y~~~F~~dv~~~~~Rik~Ra~~~~~e~ 127 (201)
T d1us7b_ 85 ACFRQFFTKIKTADRQYMEGFNDELEAFKERVRGRAKLRIEKA 127 (201)
T ss_dssp GTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33788887776 556789999999999999988766555554
No 8
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=9.47 E-value=82 Score=14.97 Aligned_cols=12 Identities=42% Similarity=0.512 Sum_probs=9.0
Q ss_pred ccHHHHHHHHhh
Q psy9750 58 LPQHVAMEMKND 69 (90)
Q Consensus 58 LP~~iA~e~~~d 69 (90)
||+-+|.++-..
T Consensus 28 ip~~vAr~IV~~ 39 (46)
T d1k6ya1 28 LPPVVAKEIVAS 39 (46)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 788888887653
No 9
>d1a7ge_ d.58.8.1 (E:) Papillomavirus-1 E2 protein {Human papillomavirus type 31 [TaxId: 10585]}
Probab=8.99 E-value=68 Score=17.17 Aligned_cols=11 Identities=45% Similarity=0.736 Sum_probs=7.9
Q ss_pred hHHHHHHHHHH
Q psy9750 23 EHAQRKAFLDT 33 (90)
Q Consensus 23 e~~~R~tfl~~ 33 (90)
.-.||..|+++
T Consensus 56 s~~QR~~FL~~ 66 (82)
T d1a7ge_ 56 STSQRDDFLNT 66 (82)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 45678888775
No 10
>d2q79a1 d.58.8.1 (A:284-362) Papillomavirus-1 E2 protein {Human papillomavirus type 16 [TaxId: 333760]}
Probab=8.79 E-value=70 Score=16.96 Aligned_cols=11 Identities=36% Similarity=0.492 Sum_probs=7.8
Q ss_pred hHHHHHHHHHH
Q psy9750 23 EHAQRKAFLDT 33 (90)
Q Consensus 23 e~~~R~tfl~~ 33 (90)
+-.||..|+++
T Consensus 54 s~~QR~~FL~~ 64 (79)
T d2q79a1 54 SEWQRDQFLSQ 64 (79)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 45678888875
Done!