RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9750
(90 letters)
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 33.8 bits (78), Expect = 0.005
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 45 DENEKLERLLLSVLPQHVAMEMKNDIISPVEGQFHKIYIQRHENV 89
+E +K +RLL +LP VA ++K + + ++NV
Sbjct: 1 EEKKKTDRLLDQLLPASVAEQLKRG--------GSPVPAESYDNV 37
>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.
Length = 592
Score = 31.0 bits (71), Expect = 0.059
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 63 AMEMKNDIISPVEGQFHKIYIQRHENV 89
AM+M+N+I +PV+G +I ++ + V
Sbjct: 555 AMKMENEIQAPVDGTVKEILVKEGDRV 581
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 29.1 bits (65), Expect = 0.19
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 63 AMEMKNDIISPVEGQFHKIYIQRHENV 89
AM+M+N+I +P +G KI ++ + V
Sbjct: 117 AMKMENEIPAPKDGVVKKILVKEGDTV 143
>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl
carrier protein (BCCP) domain is present in all
biotin-dependent enzymes, such as acetyl-CoA
carboxylase, pyruvate carboxylase, propionyl-CoA
carboxylase, methylcrotonyl-CoA carboxylase,
geranyl-CoA carboxylase, oxaloacetate decarboxylase,
methylmalonyl-CoA decarboxylase, transcarboxylase and
urea amidolyase. This domain functions in transferring
CO2 from one subsite to another, allowing
carboxylation, decarboxylation, or transcarboxylation.
During this process, biotin is covalently attached to a
specific lysine.
Length = 67
Score = 25.1 bits (56), Expect = 2.7
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 63 AMEMKNDIISPVEGQFHKIYIQRHENV 89
AM+M+N++ +PV G +I ++ + V
Sbjct: 32 AMKMENEVTAPVAGVVKEILVKEGDQV 58
>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 130
Score = 25.5 bits (56), Expect = 2.9
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 63 AMEMKNDIISPVEGQFHKIYIQRHENV 89
AM+M+N+I++ G I++ + V
Sbjct: 94 AMKMENEIVASSAGTVTAIHVTPGQVV 120
>gnl|CDD|219526 pfam07701, HNOBA, Heme NO binding associated. The HNOBA domain is
found associated with the HNOB domain and pfam00211 in
soluble cyclases and signalling proteins. The HNOB
domain is predicted to function as a heme-dependent
sensor for gaseous ligands, and transduce diverse
downstream signals, in both bacteria and animals.
Length = 209
Score = 25.3 bits (56), Expect = 4.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 42 EMEDENEKLERLLLSVLPQHVAMEM 66
E+E+E +K + LL S+LP+ VA +
Sbjct: 185 ELEEEKKKTDDLLYSMLPKSVANRL 209
>gnl|CDD|182768 PRK10837, PRK10837, putative DNA-binding transcriptional regulator;
Provisional.
Length = 290
Score = 25.0 bits (55), Expect = 5.4
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 48 EKLERLLLSVLPQ-HVAMEMKN 68
E ++ LLLS LP+ +AME+ N
Sbjct: 199 EIVDYLLLSHLPRFELAMELGN 220
>gnl|CDD|163413 TIGR03701, mena_SCO4490, menaquinone biosynthesis decarboxylase,
SCO4490 family. Members of this protein family are
putative decarboxylases involved in a late stage of the
alternative pathway for menaquinone, via futalosine, as
in Streptomyces coelicolor and Helicobacter pylori
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 433
Score = 24.9 bits (55), Expect = 6.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 43 MEDE--NEKLERLLLSVLPQHVAMEMKNDIISPVEGQFH 79
ED+ + ER+ L +L Q +A E+ D P EG FH
Sbjct: 312 QEDKYLGKATERIFLPLL-QLIAPEIV-DYHMPEEGVFH 348
>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Colony-Stimulating Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Colony-Stimulating
Factor-1 Receptor (CSF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CSF-1R,
also called c-Fms, is a member of the Platelet Derived
Growth Factor Receptor (PDGFR) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
CSF-1R to its ligand, CSF-1, leads to receptor
dimerization, trans phosphorylation and activation, and
intracellular signaling. CSF-1R signaling is critical in
the regulation of macrophages and osteoclasts. It leads
to increases in gene transcription and protein
translation, and induces cytoskeletal remodeling. CSF-1R
signaling leads to a variety of cellular responses
including survival, proliferation, and differentiation
of target cells. It plays an important role in innate
immunity, tissue development and function, and the
pathogenesis of some diseases including atherosclerosis
and cancer. CSF-1R signaling is also implicated in
mammary gland development during pregnancy and
lactation. Aberrant CSF-1/CSF-1R expression correlates
with tumor cell invasiveness, poor clinical prognosis,
and bone metastasis in breast cancer. Although the
structure of the human CSF-1R catalytic domain is known,
it is excluded from this specific alignment model
because it contains a deletion in its sequence.
Length = 374
Score = 24.8 bits (54), Expect = 6.6
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 17 LLHTMMEHAQRKAFLDTRNCI----AAR 40
LL + AQ FL ++NCI AAR
Sbjct: 214 LLRFSSQVAQGMDFLASKNCIHRDVAAR 241
>gnl|CDD|220418 pfam09813, Coiled-coil_56, Coiled-coil domain-containing protein
56. Members of this family of proteins have no known
function.
Length = 100
Score = 24.2 bits (52), Expect = 8.7
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 10/38 (26%)
Query: 9 VGGNIIGILLHTMMEHAQRKAFLDTRNCIAARLEMEDE 46
+GG ++GI +T AQ K FLD E+E+E
Sbjct: 58 IGGLVLGIYGYTFYSVAQEK-FLD---------ELEEE 85
>gnl|CDD|99921 cd05538, POLBc_Pol_II_B, DNA polymerase type-II B subfamily
catalytic domain. Bacteria contain five DNA polymerases
(I, II, III, IV and V). DNA polymerase II (Pol II) is a
prototype for the B-family of polymerases. The role of
Pol II in a variety of cellular activities, such as
repair of DNA damaged by UV irradiation or oxidation has
been proved by genetic studies. DNA polymerase III is
the main enzyme responsible for replication of the
bacterial chromosome; however, In vivo studies have also
shown that Pol II is able to participate in chromosomal
DNA replication with larger role in lagging-strand
replication.
Length = 347
Score = 24.4 bits (53), Expect = 9.8
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 42 EMEDENEKLERLLLSVLPQHVAMEMKNDIISPVEGQFHKIYIQRHEN 88
+ EDE E+L R L S LP+ + +E +G++ ++ + +N
Sbjct: 150 DTEDEEEELVRELSSTLPKGITVEF--------DGRYRAMFSYKIKN 188
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.385
Gapped
Lambda K H
0.267 0.0842 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,638,944
Number of extensions: 388636
Number of successful extensions: 530
Number of sequences better than 10.0: 1
Number of HSP's gapped: 530
Number of HSP's successfully gapped: 23
Length of query: 90
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 32
Effective length of database: 8,365,070
Effective search space: 267682240
Effective search space used: 267682240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.0 bits)