RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9750
         (90 letters)



>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
          protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
          {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
          1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
          3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
          1tl7_A*
          Length = 220

 Score = 41.1 bits (97), Expect = 7e-06
 Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 60 QHVAMEMKNDIISPVEG-QFHKIYIQRHENV 89
           H AMEMK DI +  E   FHKIYIQ+H+NV
Sbjct: 5  HHHAMEMKADINAKQEDMMFHKIYIQKHDNV 35


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.4 bits (68), Expect = 0.053
 Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 13/95 (13%)

Query: 6   VVLVGGNI-IGILL-HTMMEHAQ--RKAFLDTRNCIAARLEMEDENEKLERLLLSVLPQH 61
           + L  G++   +L+       A   ++ F             +DE      L+   L  +
Sbjct: 9   LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL-GY 67

Query: 62  VAMEMK-------NDIISPVEGQFHKIYIQRHENV 89
           V+  ++       + +++    +F   Y+    ++
Sbjct: 68  VSSLVEPSKVGQFDQVLNLCLTEFENCYL-EGNDI 101


>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain,
          signaling helix, S-helix, CGMP biosynthesis, cytoplasm,
          GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
          Length = 66

 Score = 28.9 bits (65), Expect = 0.061
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 42 EMEDENEKLERLLLSVLPQHVAMEMKN 68
           +EDE +K + LL SVLP  VA E+++
Sbjct: 39 ALEDEKKKTDTLLYSVLPPSVANELRH 65


>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
           biotin, disease mutation, gluconeogenesis, ligase, lipid
           synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
           PDB: 3bg9_A
          Length = 718

 Score = 26.5 bits (59), Expect = 1.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)

Query: 63  AMEMKNDIISPVEGQFHKIYIQRHENV 89
           AM+M+  + SP+EG   K+++ +   +
Sbjct: 682 AMKMETVVTSPMEGTVRKVHVTKDMTL 708


>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET:
           DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5
           e.8.1.1
          Length = 847

 Score = 26.4 bits (58), Expect = 1.5
 Identities = 9/47 (19%), Positives = 20/47 (42%)

Query: 44  EDENEKLERLLLSVLPQHVAMEMKNDIISPVEGQFHKIYIQRHENVR 90
            D+  K+ +++      H+    K D  +  + +  KI ++    VR
Sbjct: 61  PDKVGKIPKIVRDPSFDHIETVSKIDPYTWNKFKLTKIVVRDPLAVR 107


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 25.5 bits (55), Expect = 2.2
 Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 15/53 (28%)

Query: 38  AARLEMEDENEKLERLLLSVLPQHVAMEMKNDIISPVEGQFHKIYIQRHENVR 90
             RL+  D   K                M+ +     +    +   ++ E V 
Sbjct: 95  RKRLQELDAASK---------------VMEQEWREKAKKDLEEWNQRQSEQVE 132


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.6 bits (55), Expect = 2.8
 Identities = 7/57 (12%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 19  HTMMEHAQRKAFL--DTRNCIAARLEMEDENEKLERLLLSVLPQHVAM---EMKNDI 70
           H  ++H         + ++ +   L+   +   L R +L+  P+ +++    +++ +
Sbjct: 288 HISLDH-HSMTLTPDEVKSLLLKYLDCRPQ--DLPREVLTTNPRRLSIIAESIRDGL 341


>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP,
          structural genomics, NPPSFA; 1.55A {Pyrococcus
          horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
          Length = 74

 Score = 23.4 bits (51), Expect = 8.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 63 AMEMKNDIISPVEGQFHKIYIQRHENV 89
          AM+M+N+I SP +G   +I ++  E V
Sbjct: 38 AMKMENEIPSPRDGVVKRILVKEGEAV 64


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.137    0.385 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,356,848
Number of extensions: 71343
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 18
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)