Query psy9751
Match_columns 182
No_of_seqs 170 out of 1325
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 18:38:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4171|consensus 100.0 2.7E-34 5.9E-39 259.7 14.4 138 2-164 483-623 (671)
2 PF00211 Guanylate_cyc: Adenyl 100.0 2E-30 4.4E-35 203.2 17.4 134 1-160 48-184 (184)
3 KOG3619|consensus 100.0 8.6E-30 1.9E-34 237.4 13.3 132 2-159 698-841 (867)
4 KOG3619|consensus 100.0 1.7E-28 3.6E-33 228.8 13.9 140 1-162 152-291 (867)
5 cd07302 CHD cyclase homology d 99.9 1.7E-25 3.6E-30 171.8 17.1 134 1-158 41-177 (177)
6 KOG1023|consensus 99.9 6.2E-27 1.3E-31 208.5 10.5 140 1-165 336-479 (484)
7 KOG3618|consensus 99.9 1.2E-26 2.5E-31 211.2 9.8 139 2-162 381-528 (1318)
8 KOG3618|consensus 99.9 3E-26 6.4E-31 208.6 6.6 137 3-164 1130-1274(1318)
9 COG2114 CyaA Adenylate cyclase 99.9 1E-24 2.2E-29 178.2 14.5 128 1-162 86-217 (227)
10 smart00044 CYCc Adenylyl- / gu 99.9 7E-24 1.5E-28 167.9 14.3 110 1-131 76-186 (194)
11 cd07556 Nucleotidyl_cyc_III Cl 98.8 1.5E-07 3.3E-12 68.4 11.3 91 2-120 42-132 (133)
12 PF10851 DUF2652: Protein of u 74.3 32 0.0007 25.3 10.6 41 73-116 71-111 (116)
13 TIGR02577 cas_TM1794_Crm2 CRIS 35.1 1.6E+02 0.0035 26.8 7.2 77 2-116 405-481 (482)
No 1
>KOG4171|consensus
Probab=100.00 E-value=2.7e-34 Score=259.68 Aligned_cols=138 Identities=30% Similarity=0.576 Sum_probs=126.2
Q ss_pred CCeEEEEEeCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccceecccccceeeeeecccceeeEEEEE
Q psy9751 2 NHCLRIKILGDCYYCVSGLPEPRSDHAHCCVEMGLDMIDAIASVVEATDVTLNMRVGIHSGRVLSVVEATDVTLNMRVGI 81 (182)
Q Consensus 2 ~~~~kik~iGD~~la~~Glp~~~~~~a~~av~~Al~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~irIGI 81 (182)
|++|||+|+||+||+++|+|.....||+.++++||.|.....++.... ...++.+||||
T Consensus 483 ~~VYKVETIGDaYm~vsG~P~~~~~HAe~i~~~AL~Mm~~ak~v~~p~---------------------~~~pi~iRiGI 541 (671)
T KOG4171|consen 483 HDVYKVETIGDAYMVVSGLPDASDYHAEHIADLALGMMEEAKEVVSPV---------------------TGEPIQIRIGI 541 (671)
T ss_pred cCeEEEeeccchheeecCCCCCChhHHHHHHHHHHHHHHHhhhhcCcC---------------------CCCceEEEEEe
Confidence 799999999999999999999999999999999999999888765432 14567999999
Q ss_pred EEeeEEEEEeCCCceeeeEEcchHHHHHHhhhcCCCCeEEECHHHHHhhcC--ceEEEeCCCcccceeecCCc-EEEEEE
Q psy9751 82 HSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGEPGRVHITQSTLDSLGG--EYEVEGGHGGTRNQYLRDNH-VTTYFI 158 (182)
Q Consensus 82 htG~vv~G~vG~~~~~ydv~G~~Vn~AsRles~a~~g~I~vS~~t~~~l~~--~~~~~~~~~~~~~~~~kg~~-v~ty~l 158 (182)
|+|+|++||||.+.|+|++||||||+|+||||.+.|+.|+||+.||+.|+. .|+|++++ .+.+||++ ++||+|
T Consensus 542 HsG~VvAGVVG~kmPRYCLFGdTVn~AsrmES~s~p~KI~vS~~T~~~l~~~~~f~f~pRg----~v~vk~kg~m~tyFL 617 (671)
T KOG4171|consen 542 HSGPVVAGVVGVKMPRYCLFGDTVNLASRMESSSVPGKINVSPTTYRKLKKQGSFEFEPRG----RVEVKGKGPMETYFL 617 (671)
T ss_pred ccCCeeeeeecccccceeecCCchhhhhhhhcCCCCceEEeCHHHHHHHHhCCCceeeecC----ccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999999999999999964 59999999 78899987 999999
Q ss_pred eCCCCc
Q psy9751 159 VPPARR 164 (182)
Q Consensus 159 ~~~~~~ 164 (182)
......
T Consensus 618 ~~~~~~ 623 (671)
T KOG4171|consen 618 ERSLGP 623 (671)
T ss_pred EecCCC
Confidence 876543
No 2
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=99.97 E-value=2e-30 Score=203.22 Aligned_cols=134 Identities=30% Similarity=0.545 Sum_probs=124.0
Q ss_pred CCCeEEEEEeCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccceecccccceeeeeecccceeeEEEE
Q psy9751 1 DNHCLRIKILGDCYYCVSGLPEPRSDHAHCCVEMGLDMIDAIASVVEATDVTLNMRVGIHSGRVLSVVEATDVTLNMRVG 80 (182)
Q Consensus 1 ~~~~~kik~iGD~~la~~Glp~~~~~~a~~av~~Al~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~irIG 80 (182)
+|+++++|++||++||+||.|.+..+++.+|+++|++|++.+.+++.....+ +++|||
T Consensus 48 ~~~g~~~~~~Gd~~~~~f~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~----------------------~~~rIG 105 (184)
T PF00211_consen 48 QHGGEIIKFIGDGVMAVFGLPEPDEDAAERAVQFALALLEALERLNKESGPP----------------------LSVRIG 105 (184)
T ss_dssp HTTEEEEEEETTEEEEEESSSSCHCHHHHHHHHHHHHHHHHHHHHHHHHHSS-----------------------EEEEE
T ss_pred cccccccccccceeEEEeccccccccccccccccccchhhccccccccccee----------------------eeeecc
Confidence 4899999999999999999998889999999999999999999888776443 499999
Q ss_pred EEEeeEEEEEeCCCceeeeEEcchHHHHHHhhhcCCCCeEEECHHHHHhhc--CceEEEeCCCcccceeecCCc-EEEEE
Q psy9751 81 IHSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGEPGRVHITQSTLDSLG--GEYEVEGGHGGTRNQYLRDNH-VTTYF 157 (182)
Q Consensus 81 IhtG~vv~G~vG~~~~~ydv~G~~Vn~AsRles~a~~g~I~vS~~t~~~l~--~~~~~~~~~~~~~~~~~kg~~-v~ty~ 157 (182)
||+|++++|.+|..++.|++||++||+|+||++.+.+++|+||+++|+.|. ..|.+++.+ .+.+||++ +.+|+
T Consensus 106 I~~G~v~~g~~G~~~~~~~v~G~~vn~Aarl~~~a~~~~i~vs~~v~~~l~~~~~~~~~~~g----~~~lkG~~~~~~y~ 181 (184)
T PF00211_consen 106 IHTGPVVVGVVGSRRPEYDVFGDAVNIAARLESLAPPGQILVSEEVYDALNESDQFRFEELG----RVELKGKGPVQTYQ 181 (184)
T ss_dssp EEEEEEEEEEEESSSEEEEEESHHHHHHHHHHHTSSTTSEEEEHHHHHHHTTHTTEEEEEEE----EEEETTSSEEEEEE
T ss_pred ccccccccccccCcccceeeeehhhhhhHHHHHhhcccccccCHHHHHHhcccCceEEEEee----eEEEecCCCcEEEE
Confidence 999999999999779999999999999999999999999999999999999 799999999 89999965 99999
Q ss_pred EeC
Q psy9751 158 IVP 160 (182)
Q Consensus 158 l~~ 160 (182)
|.+
T Consensus 182 ~~~ 184 (184)
T PF00211_consen 182 LNG 184 (184)
T ss_dssp EE-
T ss_pred EEC
Confidence 863
No 3
>KOG3619|consensus
Probab=99.96 E-value=8.6e-30 Score=237.36 Aligned_cols=132 Identities=31% Similarity=0.590 Sum_probs=122.6
Q ss_pred CCeEEEEEeCcEEEEEeCCCCCC----------chHHHHHHHHHHHHHHHHHHHHHhhcccccceecccccceeeeeecc
Q psy9751 2 NHCLRIKILGDCYYCVSGLPEPR----------SDHAHCCVEMGLDMIDAIASVVEATDVTLNMRVGIHSGRVLSVVEAT 71 (182)
Q Consensus 2 ~~~~kik~iGD~~la~~Glp~~~----------~~~a~~av~~Al~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (182)
.+++||||+|-.|||++|+.... ..|.-..+++|++|...++.+|....+++
T Consensus 698 ~~IEKIKTIGSTYMAAsGL~~~~~~~~~~~~~~~~h~~~l~eFAlal~~~L~~IN~~SfNnF------------------ 759 (867)
T KOG3619|consen 698 SGVEKIKTIGSTYMAASGLNPTSAQENDQSLRQWSHLGALVEFALALMHKLDEINRHSFNNF------------------ 759 (867)
T ss_pred ccceeEEEecchhhhhhCCChhhhhccCcchhHHhhHHHHHHHHHHHHHHHHhhhHHhhccc------------------
Confidence 37899999999999999995321 15677789999999999999998887777
Q ss_pred cceeeEEEEEEEeeEEEEEeCCCceeeeEEcchHHHHHHhhhcCCCCeEEECHHHHHhhcC-ceEEEeCCCcccceeecC
Q psy9751 72 DVTLNMRVGIHSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGEPGRVHITQSTLDSLGG-EYEVEGGHGGTRNQYLRD 150 (182)
Q Consensus 72 ~~~l~irIGIhtG~vv~G~vG~~~~~ydv~G~~Vn~AsRles~a~~g~I~vS~~t~~~l~~-~~~~~~~~~~~~~~~~kg 150 (182)
.+||||+.|+|++||+|.+||+||+||+|||+||||+|++.+|.|+|||+|+..|.. +|.|+.|| .+.+||
T Consensus 760 ----~LrIGin~GpvvAGVIGArKPqYDIWGNTVNvASRMdSTGv~g~IQVTEEt~~iL~~~gy~~~~RG----~i~VKG 831 (867)
T KOG3619|consen 760 ----ELRIGINHGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGVPGRIQVTEETANILQGLGYRFECRG----VINVKG 831 (867)
T ss_pred ----eeeeceeccceeeeEecCCCCCccccccchhhhhcccccCCCCeEEecHHHHHHHhcCCeeEEecc----eEEEec
Confidence 999999999999999999999999999999999999999999999999999999986 89999999 899999
Q ss_pred Cc-EEEEEEe
Q psy9751 151 NH-VTTYFIV 159 (182)
Q Consensus 151 ~~-v~ty~l~ 159 (182)
|+ +.||++.
T Consensus 832 kGel~Tyfl~ 841 (867)
T KOG3619|consen 832 KGELETYFLC 841 (867)
T ss_pred ccceeEEEec
Confidence 98 9999998
No 4
>KOG3619|consensus
Probab=99.96 E-value=1.7e-28 Score=228.79 Aligned_cols=140 Identities=76% Similarity=1.370 Sum_probs=133.3
Q ss_pred CCCeEEEEEeCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccceecccccceeeeeecccceeeEEEE
Q psy9751 1 DNHCLRIKILGDCYYCVSGLPEPRSDHAHCCVEMGLDMIDAIASVVEATDVTLNMRVGIHSGRVLSVVEATDVTLNMRVG 80 (182)
Q Consensus 1 ~~~~~kik~iGD~~la~~Glp~~~~~~a~~av~~Al~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~irIG 80 (182)
+|+|.+||..||+|+|++|+|+++.|||.++++++++|.+++.++++..+.+. ++|||
T Consensus 152 ~~~clRiKiLGdcyyCvsglp~~~~dHA~~~v~mgl~Mi~aI~~vr~at~~dv----------------------nmrvG 209 (867)
T KOG3619|consen 152 ENHCLRIKILGDCYYCVSGLPEARPDHAVCCVEMGLDMIKAIKQVREATGVDV----------------------NMRVG 209 (867)
T ss_pred hcceEeeeeecceeEEecCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhCCCC----------------------ceEEE
Confidence 58999999999999999999999999999999999999999999999887666 99999
Q ss_pred EEEeeEEEEEeCCCceeeeEEcchHHHHHHhhhcCCCCeEEECHHHHHhhcCceEEEeCCCcccceeecCCcEEEEEEeC
Q psy9751 81 IHSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGEPGRVHITQSTLDSLGGEYEVEGGHGGTRNQYLRDNHVTTYFIVP 160 (182)
Q Consensus 81 IhtG~vv~G~vG~~~~~ydv~G~~Vn~AsRles~a~~g~I~vS~~t~~~l~~~~~~~~~~~~~~~~~~kg~~v~ty~l~~ 160 (182)
||+|+|.+|++|..|++||+|+++|.+|.+||+.+.||+||||++|.+.|..+|.+++..+...+.++|..+++||.+.+
T Consensus 210 ihsG~Vl~GvlG~~kwq~DVws~dv~lAn~mEs~G~pgrVhis~~Tl~~L~g~yeve~g~g~~r~~~l~~~~~~ty~i~~ 289 (867)
T KOG3619|consen 210 IHSGSVLCGVLGLRKWQYDVWSNDVTLANHMEAGGVPGRVHISKATLDCLNGEYEVEPGHGGERDPYLKEHGIETYLIIP 289 (867)
T ss_pred EecCceeecccccceeeeeeccchhhhhhhhhhcCCCceeEechhHHHHhCCCceeecCCCcccchHHHhcCCceEEecc
Confidence 99999999999999999999999999999999999999999999999999999999998877778889888999999998
Q ss_pred CC
Q psy9751 161 PA 162 (182)
Q Consensus 161 ~~ 162 (182)
+.
T Consensus 290 ~~ 291 (867)
T KOG3619|consen 290 PS 291 (867)
T ss_pred cc
Confidence 64
No 5
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=99.94 E-value=1.7e-25 Score=171.78 Aligned_cols=134 Identities=31% Similarity=0.512 Sum_probs=122.4
Q ss_pred CCCeEEEEEeCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccceecccccceeeeeecccceeeEEEE
Q psy9751 1 DNHCLRIKILGDCYYCVSGLPEPRSDHAHCCVEMGLDMIDAIASVVEATDVTLNMRVGIHSGRVLSVVEATDVTLNMRVG 80 (182)
Q Consensus 1 ~~~~~kik~iGD~~la~~Glp~~~~~~a~~av~~Al~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~irIG 80 (182)
+||++++++.||+++++|+.|....+++.+|+++|++|++.+..++.... ....+++|||
T Consensus 41 ~~~g~~~~~~gd~~~~~f~~~~~~~~~~~~A~~~a~~i~~~~~~~~~~~~--------------------~~~~~~~riG 100 (177)
T cd07302 41 RHGGTVDKTIGDAVMAVFGLPGAHEDHAERAVRAALEMQEALAELNAERE--------------------GGPPLRLRIG 100 (177)
T ss_pred HcCCEEEEEeCceEEEEeCCCCCchhHHHHHHHHHHHHHHHHHHHhhccc--------------------CCCCeEEEEE
Confidence 38999999999999999999999999999999999999999999876531 1345699999
Q ss_pred EEEeeEEEEEeCCCceeeeEEcchHHHHHHhhhcCCCCeEEECHHHHHhhcC-ceEEEeCCCcccceeecCC--cEEEEE
Q psy9751 81 IHSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGEPGRVHITQSTLDSLGG-EYEVEGGHGGTRNQYLRDN--HVTTYF 157 (182)
Q Consensus 81 IhtG~vv~G~vG~~~~~ydv~G~~Vn~AsRles~a~~g~I~vS~~t~~~l~~-~~~~~~~~~~~~~~~~kg~--~v~ty~ 157 (182)
||+|++++|.+|..++.|++||++||+|+||++.+.+++|++|+++++.+.+ .|.+.+.+ ...+||. ++++|+
T Consensus 101 i~~G~~~~g~~g~~~~~~~~~G~~v~~A~rl~~~a~~~~i~vs~~~~~~l~~~~~~~~~~~----~~~l~~~~~~~~~y~ 176 (177)
T cd07302 101 IHTGPVVAGVVGSERPEYTVIGDTVNLAARLESLAKPGQILVSEATYELLGDAGFEFEELG----EVELKGKSGPVRVYR 176 (177)
T ss_pred EecceEEEEecCCCCcceeEecchHhHHHHHHhcCCCCEEEECHHHHHhhccCceEEEEeC----CEEecCCCCceEEEE
Confidence 9999999999999988999999999999999999999999999999999998 89999998 7889986 699886
Q ss_pred E
Q psy9751 158 I 158 (182)
Q Consensus 158 l 158 (182)
+
T Consensus 177 ~ 177 (177)
T cd07302 177 L 177 (177)
T ss_pred C
Confidence 4
No 6
>KOG1023|consensus
Probab=99.94 E-value=6.2e-27 Score=208.50 Aligned_cols=140 Identities=27% Similarity=0.475 Sum_probs=127.0
Q ss_pred CCCeEEEEEeCcEEEEEeCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHhhcccccceecccccceeeeeecccceeeEEE
Q psy9751 1 DNHCLRIKILGDCYYCVSGLPEPRS-DHAHCCVEMGLDMIDAIASVVEATDVTLNMRVGIHSGRVLSVVEATDVTLNMRV 79 (182)
Q Consensus 1 ~~~~~kik~iGD~~la~~Glp~~~~-~~a~~av~~Al~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~irI 79 (182)
.|++|||.|+||+||+++|+|.... .|+..++.++++++..+..+... |.++.++++||
T Consensus 336 ~~d~yKVetiGDaYmvvSglp~~n~~~H~~eia~msl~~~~~~~~f~i~--------------------H~P~~~l~iRi 395 (484)
T KOG1023|consen 336 KHDVYKVETIGDAYMVVSGLPIRNGYRHAREIASMALGLRSFLESFSLP--------------------HRPWEKLRLRI 395 (484)
T ss_pred ccCCeeEeccCcceeecccCceecHhHHHHHHHHHHHHHHHHHhccCCC--------------------CCCchhhheee
Confidence 4899999999999999999998775 49999999999999988876644 45678999999
Q ss_pred EEEEeeEEEEEeCCCceeeeEEcchHHHHHHhhhcCCCCeEEECHHHHHhhc--CceEEEeCCCcccceeecCCc-EEEE
Q psy9751 80 GIHSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGEPGRVHITQSTLDSLG--GEYEVEGGHGGTRNQYLRDNH-VTTY 156 (182)
Q Consensus 80 GIhtG~vv~G~vG~~~~~ydv~G~~Vn~AsRles~a~~g~I~vS~~t~~~l~--~~~~~~~~~~~~~~~~~kg~~-v~ty 156 (182)
|+|+|++++||+|.+.|+|++|||+||+|+|||+.+. +.|++|++++..|. ++|..+.+| .+.+|||+ +.||
T Consensus 396 g~~sg~~~agVvgl~mPRYclFgDtvn~AsrMes~G~-~~i~~s~~~~~~l~~~~~~~~e~rG----~v~~kgkg~~~t~ 470 (484)
T KOG1023|consen 396 GFHSGPVVAGVVGLKMPRYCLFGDTVNTASRMESNGK-LMIHLSEEAKNLLTERPQFETEERG----LVELKGKGVMSTY 470 (484)
T ss_pred ccccCCceecccccCCCcccchhhHHHHHhhhhhcCC-eEEEecHHHHHHHHhcCceeeeccC----cEEeecCceeeeE
Confidence 9999999999999999999999999999999999999 99999999999994 378888999 78999999 9999
Q ss_pred EEeCCCCcC
Q psy9751 157 FIVPPARRR 165 (182)
Q Consensus 157 ~l~~~~~~~ 165 (182)
|+.+.....
T Consensus 471 wl~g~~~~~ 479 (484)
T KOG1023|consen 471 WLLGESSKS 479 (484)
T ss_pred EeccCcccc
Confidence 999876543
No 7
>KOG3618|consensus
Probab=99.94 E-value=1.2e-26 Score=211.23 Aligned_cols=139 Identities=49% Similarity=0.922 Sum_probs=122.0
Q ss_pred CCeEEEEEeCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccceecccccceeeeeecccceeeEEEEE
Q psy9751 2 NHCLRIKILGDCYYCVSGLPEPRSDHAHCCVEMGLDMIDAIASVVEATDVTLNMRVGIHSGRVLSVVEATDVTLNMRVGI 81 (182)
Q Consensus 2 ~~~~kik~iGD~~la~~Glp~~~~~~a~~av~~Al~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~irIGI 81 (182)
-||+||.|+||+|.|+.|.|+++.|||.++++++|.|+.+++++.++..... ++|+||
T Consensus 381 ~gcEKISTLGDCYYCVaGCPEPraDHA~ccvEMGLgMI~AirqFd~~r~e~V----------------------nMRVGv 438 (1318)
T KOG3618|consen 381 TGCEKISTLGDCYYCVAGCPEPRADHAYCCVEMGLGMIKAIRQFDQERKEMV----------------------NMRVGV 438 (1318)
T ss_pred cCcchhccccceeeeecCCCCCcccceeeehhhcchHHHHHHHHHHHhhccc----------------------ceEEEE
Confidence 4899999999999999999999999999999999999999999998865544 999999
Q ss_pred EEeeEEEEEeCCCceeeeEEcchHHHHHHhhhcCCCCeEEECHHHHHhhcCceEEEeCCCc--ccceeecC-----C--c
Q psy9751 82 HSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGEPGRVHITQSTLDSLGGEYEVEGGHGG--TRNQYLRD-----N--H 152 (182)
Q Consensus 82 htG~vv~G~vG~~~~~ydv~G~~Vn~AsRles~a~~g~I~vS~~t~~~l~~~~~~~~~~~~--~~~~~~kg-----~--~ 152 (182)
|||.|+||++|.+|+.||+|.++||+|..||+.+.+|++||||+|.+.|.+.|..|+...- ..+..+.| + .
T Consensus 439 HTGtVlCGivGtrRfKFDVwSNDV~LAN~MEssGvag~VHiSeaTak~L~d~Ye~EeG~~~~g~~~~~V~g~~rRtnP~t 518 (1318)
T KOG3618|consen 439 HTGTVLCGIVGTRRFKFDVWSNDVNLANLMESSGVAGKVHISEATAKYLDDRYEMEEGKVIEGLGQSVVAGQLRRTNPGT 518 (1318)
T ss_pred ecceEEeeeeecceEeeeeccCcchHHHHHHhcCCCcceEeeHHHHHHhcccceeccCccccccceeEEeceeeecCCcc
Confidence 9999999999999999999999999999999999999999999999999999998876411 11223333 1 2
Q ss_pred EEEEEEeCCC
Q psy9751 153 VTTYFIVPPA 162 (182)
Q Consensus 153 v~ty~l~~~~ 162 (182)
+.||++.+.+
T Consensus 519 ~kt~li~G~~ 528 (1318)
T KOG3618|consen 519 LKTYLISGQR 528 (1318)
T ss_pred cceEEecCcc
Confidence 7888887765
No 8
>KOG3618|consensus
Probab=99.93 E-value=3e-26 Score=208.63 Aligned_cols=137 Identities=24% Similarity=0.455 Sum_probs=124.5
Q ss_pred CeEEEEEeCcEEEEEeCCCCCC-------chHHHHHHHHHHHHHHHHHHHHHhhcccccceecccccceeeeeeccccee
Q psy9751 3 HCLRIKILGDCYYCVSGLPEPR-------SDHAHCCVEMGLDMIDAIASVVEATDVTLNMRVGIHSGRVLSVVEATDVTL 75 (182)
Q Consensus 3 ~~~kik~iGD~~la~~Glp~~~-------~~~a~~av~~Al~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 75 (182)
.++||||||-+|||++|+..++ .+|-....++|++|++.+..+|+.. .+..+
T Consensus 1130 ~iEKIKTIG~tyMAASGLnp~~~~~~~hp~EHl~~l~eFa~amq~Vvd~FN~dl---------------------L~Fnf 1188 (1318)
T KOG3618|consen 1130 SIEKIKTIGATYMAASGLNPAQAQDGSHPQEHLQILFEFAKAMQRVVDDFNNDL---------------------LWFNF 1188 (1318)
T ss_pred hhHHHhhhhHHHHHhcCCChHHccCCCChHHHHHHHHHHHHHHHHHHHHhhhhh---------------------hheee
Confidence 4689999999999999995432 3577888999999999999998763 35567
Q ss_pred eEEEEEEEeeEEEEEeCCCceeeeEEcchHHHHHHhhhcCCCCeEEECHHHHHhhcCceEEEeCCCcccceeecCCc-EE
Q psy9751 76 NMRVGIHSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGEPGRVHITQSTLDSLGGEYEVEGGHGGTRNQYLRDNH-VT 154 (182)
Q Consensus 76 ~irIGIhtG~vv~G~vG~~~~~ydv~G~~Vn~AsRles~a~~g~I~vS~~t~~~l~~~~~~~~~~~~~~~~~~kg~~-v~ 154 (182)
.+|||.+.|+|.+|+||.+|.-||+|||+||+|+||.+++.+++|+||++++..|.+.|+|++++ .+++||+. |+
T Consensus 1189 ~lrvG~NiGpvTAGVIGTtKLyYDIWGDtVNiASRMdsTGv~nRIQVs~~~~~~L~~rYeFe~Rg----~v~VKGkd~M~ 1264 (1318)
T KOG3618|consen 1189 KLRVGFNIGPVTAGVIGTTKLYYDIWGDTVNIASRMDSTGVENRIQVSEESYRVLSKRYEFEYRG----TVNVKGKDQMK 1264 (1318)
T ss_pred eEEeeccccCccccccccceeeehhhcchhhhhhhccccCCcceeEecHHHHHHHHhhccccccc----eEEEeccCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999997 99
Q ss_pred EEEEeCCCCc
Q psy9751 155 TYFIVPPARR 164 (182)
Q Consensus 155 ty~l~~~~~~ 164 (182)
||......+.
T Consensus 1265 tyLy~~r~d~ 1274 (1318)
T KOG3618|consen 1265 TYLYPKRTDH 1274 (1318)
T ss_pred eEEeccccCC
Confidence 9998877655
No 9
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=99.92 E-value=1e-24 Score=178.19 Aligned_cols=128 Identities=27% Similarity=0.426 Sum_probs=104.2
Q ss_pred CCCeEEEEEeCcEEEEEeCCCCCCchHHHHHHH-HHHHHHHHHHHHHHhhcccccceecccccceeeeeecccceeeEEE
Q psy9751 1 DNHCLRIKILGDCYYCVSGLPEPRSDHAHCCVE-MGLDMIDAIASVVEATDVTLNMRVGIHSGRVLSVVEATDVTLNMRV 79 (182)
Q Consensus 1 ~~~~~kik~iGD~~la~~Glp~~~~~~a~~av~-~Al~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~irI 79 (182)
+||+..+|++||++|++||.|.+.. +|.+|+. ++++|++...+.+.+ .+++||
T Consensus 86 ~~gG~v~k~iGD~~la~F~~p~~~~-~A~~~a~~~~~~~~~~~~~~~~~-------------------------~l~~ri 139 (227)
T COG2114 86 RHGGRVVKFIGDGFLAVFGRPSPLE-DAVACALDLQLALRNPLARLRRE-------------------------SLRVRI 139 (227)
T ss_pred HcCCEEEEEecceEEEEeCCCCCcH-HHHHHHHHHHHHHHHHHhhccCc-------------------------CeeEEE
Confidence 5899999999999999999998766 4443333 344444443332221 159999
Q ss_pred EEEEeeEEEEEeCCCceeeeEEcchHHHHHHhhhcCCCCeEEECHHHHHhhc-CceEEEeCCCcccceeecCC--cEEEE
Q psy9751 80 GIHSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGEPGRVHITQSTLDSLG-GEYEVEGGHGGTRNQYLRDN--HVTTY 156 (182)
Q Consensus 80 GIhtG~vv~G~vG~~~~~ydv~G~~Vn~AsRles~a~~g~I~vS~~t~~~l~-~~~~~~~~~~~~~~~~~kg~--~v~ty 156 (182)
|||+|+|+.|.+|+ ||+||++||+|+|||+.++|++|++|++|++.+. ..+.+...+ ...+||. ++++|
T Consensus 140 Gi~~G~vv~~~~g~----~~~~G~~VN~AaRLe~~a~~g~i~iS~~~~~~~~~~~~~~~~~g----~~~lkg~~~~~~v~ 211 (227)
T COG2114 140 GIHTGEVVVGNTGG----YTVVGSAVNQAARLESLAKPGQVLLSEATYDLVRDLVDLFSGLG----SHRLKGLARPVRVY 211 (227)
T ss_pred EEEeecEEEEeecC----eeEechHhHHHHHHHHhcCCCeEEEcHHHHHHHhhhhhhhhcCC----ceecCCCCCceEEE
Confidence 99999999999988 9999999999999999999999999999999999 566667777 7889985 49999
Q ss_pred EEeCCC
Q psy9751 157 FIVPPA 162 (182)
Q Consensus 157 ~l~~~~ 162 (182)
.+....
T Consensus 212 ~~~~~~ 217 (227)
T COG2114 212 QLCHRS 217 (227)
T ss_pred Eecccc
Confidence 997654
No 10
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=99.91 E-value=7e-24 Score=167.90 Aligned_cols=110 Identities=34% Similarity=0.648 Sum_probs=101.3
Q ss_pred CCCeEEEEEeCcEEEEEeCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHhhcccccceecccccceeeeeecccceeeEEE
Q psy9751 1 DNHCLRIKILGDCYYCVSGLPEPRS-DHAHCCVEMGLDMIDAIASVVEATDVTLNMRVGIHSGRVLSVVEATDVTLNMRV 79 (182)
Q Consensus 1 ~~~~~kik~iGD~~la~~Glp~~~~-~~a~~av~~Al~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~irI 79 (182)
+||++.+|++||++|++||.|.... +|+.+++.+|+++++.+..++.... ...+++||
T Consensus 76 ~~gg~v~~~~Gd~~l~~F~~~~~~~~~~a~~a~~~al~l~~~~~~~~~~~~---------------------~~~l~~ri 134 (194)
T smart00044 76 RHGGYKVKTIGDAYMVVSGLPTEALVDHAELAADEALDMVESLKTVLSQHR---------------------GNGLRVRI 134 (194)
T ss_pred hcCeEEEEEeCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcc---------------------CCCeeEEE
Confidence 4899999999999999999998884 9999999999999999988876531 24579999
Q ss_pred EEEEeeEEEEEeCCCceeeeEEcchHHHHHHhhhcCCCCeEEECHHHHHhhc
Q psy9751 80 GIHSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGEPGRVHITQSTLDSLG 131 (182)
Q Consensus 80 GIhtG~vv~G~vG~~~~~ydv~G~~Vn~AsRles~a~~g~I~vS~~t~~~l~ 131 (182)
|||+|+|++|.+|...++||+||++||+|+||++.+.+++|++|+++++.|+
T Consensus 135 Gih~G~v~~~~~g~~~~~~~~~G~~vn~AarL~~~a~~g~i~vs~~~~~~l~ 186 (194)
T smart00044 135 GIHTGPVVAGVVGITMPRYCLFGDTVNLASRMESVGDPGQILVSEETYSLLR 186 (194)
T ss_pred EEeccceEEEecCCCCceeEEeChHHHHHHHHHhcCCCCeEEECHHHHHHHH
Confidence 9999999999999997799999999999999999999999999999999995
No 11
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=98.77 E-value=1.5e-07 Score=68.38 Aligned_cols=91 Identities=40% Similarity=0.698 Sum_probs=73.3
Q ss_pred CCeEEEEEeCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccceecccccceeeeeecccceeeEEEEE
Q psy9751 2 NHCLRIKILGDCYYCVSGLPEPRSDHAHCCVEMGLDMIDAIASVVEATDVTLNMRVGIHSGRVLSVVEATDVTLNMRVGI 81 (182)
Q Consensus 2 ~~~~kik~iGD~~la~~Glp~~~~~~a~~av~~Al~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~irIGI 81 (182)
|++...++.||.|++++.. +...++.+++..|.+.+....... ...+.++||+
T Consensus 42 ~~~~~~r~~~d~f~~l~~~-----~~~~~~~~~~~~i~~~~~~~~~~~----------------------~~~~~~~ig~ 94 (133)
T cd07556 42 SGDLKIKTIGDEFMVVSGL-----DHPAAAVAFAEDMREAVSALNQSE----------------------GNPVRVRIGI 94 (133)
T ss_pred cCcEEEEeecceEEEEECc-----hHHHHHHHHHHHHHHHHHHHHhcc----------------------CCceEEEEEE
Confidence 4677889999999999853 445677788888887765543221 2235899999
Q ss_pred EEeeEEEEEeCCCceeeeEEcchHHHHHHhhhcCCCCeE
Q psy9751 82 HSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGEPGRV 120 (182)
Q Consensus 82 htG~vv~G~vG~~~~~ydv~G~~Vn~AsRles~a~~g~I 120 (182)
+.|++..+..|. ++.++.+|+.+|.|+++++.+++++|
T Consensus 95 ~~g~~~~~~~~~-~~~~~~~~~~~~~a~~a~~~a~~~~i 132 (133)
T cd07556 95 HTGPVVVGVIGS-RPQYDVWGALVNLASRMESQAKAGQV 132 (133)
T ss_pred ecccEEEEeccC-CccceEEcHHHHHHHHHHhcCCCCCc
Confidence 999999999888 88899999999999999999998876
No 12
>PF10851 DUF2652: Protein of unknown function (DUF2652) ; InterPro: IPR020503 This entry contains proteins with no known function.
Probab=74.29 E-value=32 Score=25.35 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=33.6
Q ss_pred ceeeEEEEEEEeeEEEEEeCCCceeeeEEcchHHHHHHhhhcCC
Q psy9751 73 VTLNMRVGIHSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGE 116 (182)
Q Consensus 73 ~~l~irIGIhtG~vv~G~vG~~~~~ydv~G~~Vn~AsRles~a~ 116 (182)
..|.+++=.|.|++..=.+|.-. -++|.+|-+|.||-....
T Consensus 71 ~~LsLKfV~H~Ge~~~~~Vk~~~---kL~G~dVI~aHrlLKN~v 111 (116)
T PF10851_consen 71 INLSLKFVAHYGEVAQQKVKRFC---KLAGKDVIEAHRLLKNDV 111 (116)
T ss_pred hcceEEEEEEeeeeeeeeecccc---hhcCchhhHhHHHHcCCC
Confidence 36799999999999888887652 478999999999976543
No 13
>TIGR02577 cas_TM1794_Crm2 CRISPR-associated protein, Crm2 family. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.
Probab=35.12 E-value=1.6e+02 Score=26.82 Aligned_cols=77 Identities=9% Similarity=0.086 Sum_probs=48.6
Q ss_pred CCeEEEEEeCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccceecccccceeeeeecccceeeEEEEE
Q psy9751 2 NHCLRIKILGDCYYCVSGLPEPRSDHAHCCVEMGLDMIDAIASVVEATDVTLNMRVGIHSGRVLSVVEATDVTLNMRVGI 81 (182)
Q Consensus 2 ~~~~kik~iGD~~la~~Glp~~~~~~a~~av~~Al~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~irIGI 81 (182)
++++-|-.=||-+|++. ....|+++|.++++........... . .-.+++
T Consensus 405 ~~g~~VYaGGDDvlai~--------p~~~al~~a~~l~~~F~~~~~~~~~-~----------------------~~~~T~ 453 (482)
T TIGR02577 405 EHGELVYAGGDDVLALL--------PVDTALDVAKELRKEFRESLEKSLG-G----------------------ERGPTM 453 (482)
T ss_pred hCeEEEEEccCcEEEEc--------cHHHHHHHHHHHHHHHHHHhhcccc-c----------------------CCCceE
Confidence 45677777899999886 4556888898888877765532110 0 113444
Q ss_pred EEeeEEEEEeCCCceeeeEEcchHHHHHHhhhcCC
Q psy9751 82 HSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGE 116 (182)
Q Consensus 82 htG~vv~G~vG~~~~~ydv~G~~Vn~AsRles~a~ 116 (182)
..|-+++- .-.-+....+.|..++..|+
T Consensus 454 SaGI~iah-------~k~Pl~~~~~~a~ell~~AK 481 (482)
T TIGR02577 454 SAGLLIVH-------HKEPLYDALELARRLLKRAK 481 (482)
T ss_pred EEEEEEeC-------CCCcHHHHHHHHHHHHHHhc
Confidence 45544442 11346788888888887664
Done!