RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9751
(182 letters)
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
domain.
Length = 184
Score = 143 bits (364), Expect = 4e-44
Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 43/167 (25%)
Query: 3 HCLRIKILGDCYYCVSGLPEPRSDHAHCCVEMGLDMIDAIASVVEATDVTLNMRVGIHSG 62
++K +GD Y SGLPEP HA EM LDM++AI SV
Sbjct: 50 GVYKVKTIGDAYMAASGLPEPSPAHAQTLAEMALDMLEAIKSV--NIHSFEG-------- 99
Query: 63 RVLSVVEATDVTLNMRVGIHSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGEPGRVHI 122
L +RVGIH+G V+ GV+G ++ +YDVW + V LA+ ME+ G PG++H+
Sbjct: 100 ------------LRVRVGIHTGPVVAGVIGARRPRYDVWGDTVNLASRMESTGVPGKIHV 147
Query: 123 TQSTLDSLG----------GEYEVEGGHGGTRNQYLRDNHVTTYFIV 159
++ T L GE EV+G + TYF+
Sbjct: 148 SEETYRLLKTREQFEFTERGEVEVKGKGK-----------METYFLN 183
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 122 bits (308), Expect = 2e-35
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 22/135 (16%)
Query: 2 NHCLRIKILGDCYYCVSGLPEPRS-DHAHCCVEMGLDMIDAIASVVEATDVTLNMRVGIH 60
+ ++K +GD Y SGLPE DHA + LDM++ + +V+
Sbjct: 77 HGGYKVKTIGDAYMVASGLPEEALVDHAELIADEALDMVEELKTVL-------------- 122
Query: 61 SGRVLSVVEATDVTLNMRVGIHSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGEPGRV 120
V+ + L +R+GIH+G V+ GV+G++ +Y ++ + V LA+ ME+ G+PG++
Sbjct: 123 -------VQHREEGLRVRIGIHTGPVVAGVVGIRMPRYCLFGDTVNLASRMESAGDPGQI 175
Query: 121 HITQSTLDSLGGEYE 135
+++ T L
Sbjct: 176 QVSEETYSLLARRGG 190
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic and
prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions to
bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 113 bits (284), Expect = 4e-32
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 20/132 (15%)
Query: 1 DNHCLRIKILGDCYYCVSGLPEPRSDHAHCCVEMGLDMIDAIASVVEATDVTLNMRVGIH 60
+ K +GD V GLP DHA V L+M +A+A
Sbjct: 41 RHGGTVDKTIGDAVMAVFGLPGAHEDHAERAVRAALEMQEALAE---------------- 84
Query: 61 SGRVLSVVEATDVTLNMRVGIHSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGEPGRV 120
L+ L +R+GIH+G V+ GV+G ++ +Y V + V LA +E+ +PG++
Sbjct: 85 ----LNAEREGGPPLRLRIGIHTGPVVAGVVGSERPEYTVIGDTVNLAARLESLAKPGQI 140
Query: 121 HITQSTLDSLGG 132
++++T + LG
Sbjct: 141 LVSEATYELLGD 152
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be divided
into two major groups; the mononucleotidyl cyclases
(MNC's) and the diguanylate cyclases (DGC's). The
MNC's, which include the adenylate cyclases (AC's) and
the guanylate cyclases (GC's), have a conserved cyclase
homology domain (CHD), while the DGC's have a conserved
GGDEF domain, named after a conserved motif within this
subgroup. Their products, cyclic guanylyl and adenylyl
nucleotides, are second messengers that play important
roles in eukaryotic signal transduction and prokaryotic
sensory pathways.
Length = 133
Score = 85.9 bits (213), Expect = 5e-22
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 28/120 (23%)
Query: 2 NHCLRIKILGDCYYCVSGLPEPRSDHAHCCVEMGLDMIDAIASVVEATDVTLNMRVGIHS 61
+ L+IK +GD + VSGL DH V DM +A++++ ++ + +R+GI
Sbjct: 42 SGDLKIKTIGDEFMVVSGL-----DHPAAAVAFAEDMREAVSALNQSEGNPVRVRIGI-- 94
Query: 62 GRVLSVVEATDVTLNMRVGIHSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGEPGRVH 121
H+G V+ GV+G + QYDVW V LA+ ME+ + G+V
Sbjct: 95 --------------------HTGPVVVGVIGS-RPQYDVWGALVNLASRMESQAKAGQVL 133
>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms].
Length = 227
Score = 49.8 bits (119), Expect = 9e-08
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 30/132 (22%)
Query: 3 HCLRI-KILGDCYYCVSGLPEPRSDHAHCCVEMGLDMIDAIASVVEATDVTLNMRVGIHS 61
H R+ K +GD + V G P P D C +++ L + + +A + +
Sbjct: 87 HGGRVVKFIGDGFLAVFGRPSPLEDAVACALDLQLALRNPLARLRRES------------ 134
Query: 62 GRVLSVVEATDVTLNMRVGIHSGRVLCGVLGLKKWQYDVWSNDVTLANNMEAGGEPGRVH 121
L +R+GIH+G V+ G G Y V + V A +E+ +PG+V
Sbjct: 135 -------------LRVRIGIHTGEVVVGNTG----GYTVVGSAVNQAARLESLAKPGQVL 177
Query: 122 ITQSTLDSLGGE 133
++++T D +
Sbjct: 178 LSEATYDLVRDL 189
>gnl|CDD|204013 pfam08651, DASH_Duo1, DASH complex subunit Duo1. The DASH
complex is a ~10 subunit microtubule-binding complex
that is transferred to the kinetochore prior to
mitosis. In Saccharomyces cerevisiae DASH forms both
rings and spiral structures on microtubules in vitro.
Length = 78
Score = 28.4 bits (64), Expect = 0.51
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 36 LDMIDAIASVVEATDVTLNMRVGIHSGRVLSVVEATDVTLNMRVGIHS 83
L+ + I V+E +L + +V V +T+ L+ + I S
Sbjct: 7 LEQLRKINEVIENLIESLR-GAKGNMEKVQETVNSTNTLLDTWIRILS 53
>gnl|CDD|236292 PRK08566, PRK08566, DNA-directed RNA polymerase subunit A';
Validated.
Length = 882
Score = 28.3 bits (64), Expect = 2.5
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 9/25 (36%)
Query: 146 QYLRDNHVTTYFI-----VPPARRR 165
QY HVTTYF +PPAR R
Sbjct: 272 QY----HVTTYFDNEIPGIPPARHR 292
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 27.7 bits (62), Expect = 4.4
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 21/102 (20%)
Query: 46 VEAT---DVTLNMRVGIHS--GRVLSVVEATDVTLNMRV--GIHSGRVLCGVLGLKKWQY 98
VE T DVT MR+ G VLSV+ D + G+ G L
Sbjct: 342 VEPTVFADVTPGMRIAREEIFGPVLSVLRWRDEAEMVAQANGVEYG--LTA--------- 390
Query: 99 DVWSNDVTLANNMEAGGEPGRVHITQSTLDSLGGEYEVEGGH 140
+W+ND++ A+ E G V I S+ LG + GG
Sbjct: 391 AIWTNDISQAHRTARRVEAGYVWINGSSRHFLGAPF---GGV 429
>gnl|CDD|188524 TIGR04009, wcaE, colanic acid biosynthesis glycosyl transferase
WcaE. This gene is one of the glycosyl transferases
involved in the biosynthesis of colanic acid, an
exopolysaccharide expressed in Enterobacteraceae
species.
Length = 248
Score = 26.8 bits (59), Expect = 6.0
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 90 VLGLKKWQYDVW---SNDVTLANNMEAGGEPGR 119
GLKK+ YD+ S+D LA + G P R
Sbjct: 154 TSGLKKYPYDLQYKVSSDYALAAKLYKSGYPFR 186
>gnl|CDD|214331 CHL00002, matK, maturase K.
Length = 504
Score = 27.2 bits (61), Expect = 6.6
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 18/41 (43%)
Query: 96 WQY--DVWSNDVTLANNMEAGGEPGRVHITQ---STLDSLG 131
WQ +WS +PGR+HI Q + D LG
Sbjct: 304 WQCHFHLWS-------------QPGRIHINQLSNHSFDFLG 331
>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine
Kinase, HER3. Protein Tyrosine Kinase (PTK) family;
HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER3 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER3 binds the neuregulin ligands, NRG1 and
NRG2. HER3 contains an impaired tyr kinase domain and
relies on its heterodimerization partners for activity
following ligand binding. The HER2-HER3 heterodimer
constitutes a high affinity co-receptor capable of
potent mitogenic signaling. HER3 participates in a
signaling pathway involved in the proliferation,
survival, adhesion, and motility of tumor cells.
Length = 279
Score = 26.5 bits (58), Expect = 8.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 97 QYDVWSNDVTLANNMEAGGEP 117
Q DVWS VT+ M G EP
Sbjct: 191 QSDVWSYGVTVWEMMSYGAEP 211
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.421
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,152,500
Number of extensions: 817174
Number of successful extensions: 604
Number of sequences better than 10.0: 1
Number of HSP's gapped: 593
Number of HSP's successfully gapped: 14
Length of query: 182
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 91
Effective length of database: 6,901,388
Effective search space: 628026308
Effective search space used: 628026308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)