BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9752
(722 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 225 bits (574), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 121/239 (50%), Positives = 151/239 (63%), Gaps = 39/239 (16%)
Query: 286 NMDLYHQSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRA 345
N +LYHQSY V V+FASI ++ EFY E D N +G+ECLRLLNEIIADFD+LL
Sbjct: 4 NEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLL------- 56
Query: 346 IDKIKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGL--MPDYR 403
S +F ++KIKT+GSTYMAA GL +P
Sbjct: 57 -----------------------------SKPKFSGVEKIKTIGSTYMAATGLSAIPSQE 87
Query: 404 ILDEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQ 463
E E ++ T+VEF +A+ KL IN++S+N+F LRVGIN GPV+AGVIGA+KPQ
Sbjct: 88 HAQEPERQY-MHIGTMVEFAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQ 146
Query: 464 YDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYPYEFQCRGKVKVKGKGDMTTYFL 522
YDIWGNTVNVASRMDSTG+ + QVTEE +L+ Y CRG + VKGKGD+ TYF+
Sbjct: 147 YDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFV 205
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 552 KVKVTEEVYQVLKNYPYEFQCRGKVKVKGKGDMTTYFL 589
K++VTEE +L+ Y CRG + VKGKGD+ TYF+
Sbjct: 168 KIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFV 205
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1TL7|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
pdb|1U0H|B Chain B, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|B Chain B, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|B Chain B, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 212
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/239 (50%), Positives = 151/239 (63%), Gaps = 39/239 (16%)
Query: 286 NMDLYHQSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRA 345
N +LYHQSY V V+FASI ++ EFY E D N +G+ECLRLLNEIIADFD+LL
Sbjct: 5 NEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLL------- 57
Query: 346 IDKIKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGL--MPDYR 403
S +F ++KIKT+GSTYMAA GL +P
Sbjct: 58 -----------------------------SKPKFSGVEKIKTIGSTYMAATGLSAIPSQE 88
Query: 404 ILDEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQ 463
E E ++ T+VEF +A+ KL IN++S+N+F LRVGIN GPV+AGVIGA+KPQ
Sbjct: 89 HAQEPERQY-MHIGTMVEFAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQ 147
Query: 464 YDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYPYEFQCRGKVKVKGKGDMTTYFL 522
YDIWGNTVNVASRMDSTG+ + QVTEE +L+ Y CRG + VKGKGD+ TYF+
Sbjct: 148 YDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFV 206
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 552 KVKVTEEVYQVLKNYPYEFQCRGKVKVKGKGDMTTYFL 589
K++VTEE +L+ Y CRG + VKGKGD+ TYF+
Sbjct: 169 KIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFV 206
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 224 bits (571), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/239 (50%), Positives = 151/239 (63%), Gaps = 39/239 (16%)
Query: 286 NMDLYHQSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRA 345
N +LYHQSY V V+FASI ++ EFY E D N +G+ECLRLLNEIIADFD+LL
Sbjct: 1 NEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLL------- 53
Query: 346 IDKIKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGL--MPDYR 403
S +F ++KIKT+GSTYMAA GL +P
Sbjct: 54 -----------------------------SKPKFSGVEKIKTIGSTYMAATGLSAIPSQE 84
Query: 404 ILDEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQ 463
E E ++ T+VEF +A+ KL IN++S+N+F LRVGIN GPV+AGVIGA+KPQ
Sbjct: 85 HAQEPERQY-MHIGTMVEFAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQ 143
Query: 464 YDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYPYEFQCRGKVKVKGKGDMTTYFL 522
YDIWGNTVNVASRMDSTG+ + QVTEE +L+ Y CRG + VKGKGD+ TYF+
Sbjct: 144 YDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFV 202
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 552 KVKVTEEVYQVLKNYPYEFQCRGKVKVKGKGDMTTYFL 589
K++VTEE +L+ Y CRG + VKGKGD+ TYF+
Sbjct: 165 KIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFV 202
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 99.8 bits (247), Expect = 5e-21, Method: Composition-based stats.
Identities = 66/175 (37%), Positives = 94/175 (53%), Gaps = 17/175 (9%)
Query: 367 RILDEDETSPDRF---RAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPGAYLSTLVEFV 423
R LD ++ D ++KI+ G +YM G+ P R D T L +F
Sbjct: 35 RFLDRLYSAFDELVDQHGLEKIEVSGDSYMVVSGV-PRPR---PDHTQ------ALADFA 84
Query: 424 FAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLP 483
M + + + N LRVG+ GPVVAGV+G+R+ +Y +WG+ VNVASRM+ST
Sbjct: 85 LDMTNVAAQLKDPRGNPVPLRVGLATGPVVAGVVGSRRFRYCVWGDAVNVASRMESTDSV 144
Query: 484 NHTQVTEEVYQVLKNYPYEFQCRGKVKVKGKGDMTTYFLTDRK---QPGTMRVEE 535
QV +EVY+ LK+ + + RG + VKGKG M T++L RK PG +R E
Sbjct: 145 GQIQVPDEVYERLKD-DFVLRERGHINVKGKGVMRTWYLIGRKVAADPGEVRGAE 198
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 13/142 (9%)
Query: 384 KIKTVGSTYMAAVGLMPDYRILDEDETSP-GAYLSTLVEFVFAMRDKLIVINENSYNNFM 442
K++T+G YM + T P + L+EF M ++ + +
Sbjct: 55 KVETIGDAYMVVCNV-----------TVPCDDHADVLLEFALRMHEEASRVASSLGEPVR 103
Query: 443 LRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYP-Y 501
+RVG++ GPVVAGV+G + P++ ++G+TVN ASRM+S G ++E Y L++ +
Sbjct: 104 IRVGMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHISEACYXCLRSKERF 163
Query: 502 EFQCRGKVKVKGKGDMTTYFLT 523
E + RG + VKGKG M TY L+
Sbjct: 164 EIRERGNITVKGKGTMRTYLLS 185
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 552 KVKVTEEVYQVLKNYP-YEFQCRGKVKVKGKGDMTTYFLT 590
++ ++E Y L++ +E + RG + VKGKG M TY L+
Sbjct: 146 QIHISEACYXCLRSKERFEIRERGNITVKGKGTMRTYLLS 185
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 13/142 (9%)
Query: 384 KIKTVGSTYMAAVGLMPDYRILDEDETSP-GAYLSTLVEFVFAMRDKLIVINENSYNNFM 442
K++T+G YM + T P + L+EF M ++ + +
Sbjct: 55 KVETIGDAYMVVCNV-----------TVPCDDHADVLLEFALRMHEEASRVASSLGEPVR 103
Query: 443 LRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYP-Y 501
+RVG++ GPVVAGV+G + P++ ++G+TVN ASRM+S G ++E Y L++ +
Sbjct: 104 IRVGMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHISEACYCCLRSKERF 163
Query: 502 EFQCRGKVKVKGKGDMTTYFLT 523
E + RG + VKGKG M TY L+
Sbjct: 164 EIRERGNITVKGKGTMRTYLLS 185
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 552 KVKVTEEVYQVLKNYP-YEFQCRGKVKVKGKGDMTTYFLT 590
++ ++E Y L++ +E + RG + VKGKG M TY L+
Sbjct: 146 QIHISEACYCCLRSKERFEIRERGNITVKGKGTMRTYLLS 185
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 18/199 (9%)
Query: 343 FRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDY 402
F A G M V L+ D + T + + K++TVG YM GL P+
Sbjct: 23 FNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGL-PEP 81
Query: 403 RILDEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKP 462
I + ++ M + + + + + +GI+ G VV GVIG R P
Sbjct: 82 CI---------HHARSICHLALDMMEIAGQVQVDG-ESVQITIGIHTGEVVTGVIGQRMP 131
Query: 463 QYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVL-----KNYPYEFQCRGKVKVKGKGD- 516
+Y ++GNTVN+ SR ++TG V+E Y+ L + + + RG V +KGK +
Sbjct: 132 RYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEP 191
Query: 517 MTTYFLTDRKQPGTMRVEE 535
M +FL+ RK GT ++
Sbjct: 192 MQVWFLS-RKNTGTEETKQ 209
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 292 QSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKT 351
+ Y V ++F+ I ++ F + ++ + LLN++ FD L + + K++T
Sbjct: 8 KRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVET 67
Query: 352 VGSTYMAAVGL 362
VG YM GL
Sbjct: 68 VGDKYMTVSGL 78
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 443 LRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVL-----K 497
+ +GI+ G VV GVIG R P+Y ++GNTVN+ SR ++TG V+E Y+ L
Sbjct: 113 ITIGIHTGEVVTGVIGQRMPRYSLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENS 172
Query: 498 NYPYEFQCRGKVKVKGKGD-MTTYFLTDRKQPGTMRVEE 535
+ + + RG V +KGK + M +FL+ RK GT ++
Sbjct: 173 DPQFHLEHRGPVSMKGKKEPMQVWFLS-RKNTGTEETKQ 210
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 292 QSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKT 351
+ Y V ++F+ I ++ F + ++ + LLN++ FD L + + K++T
Sbjct: 9 KRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVET 68
Query: 352 VGSTYMAAVGL 362
V YM GL
Sbjct: 69 VCDKYMTVSGL 79
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 289 LYHQSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDK 348
+Y Q + V ++FA I E + L E + LNE+ A FD+L E+
Sbjct: 27 IYIQKHDNVSILFADI----EGFTSLASQCTAQELVMTLNELFARFDKLAAENHCL---- 78
Query: 349 IKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDYRILDED 408
+IK +G Y GL P+ R
Sbjct: 79 -----------------------------------RIKILGDCYYCVSGL-PEAR----- 97
Query: 409 ETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYDIWG 468
+ VE M + + ++ E + N +RVGI+ G V GV+G RK Q+D+W
Sbjct: 98 ----ADHAHCCVEMGMDMIEAISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWS 153
Query: 469 NTVNVASRMDSTGLPNHTQVTEEVYQVLK-NYPYEFQCRGK 508
N V +A+ M++ G +T+ L +Y E C G+
Sbjct: 154 NDVTLANHMEAGGKAGRIHITKATLSYLNGDYEVEPGCGGE 194
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 289 LYHQSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDK 348
+Y Q + V ++FA I E + L E + LNE+ A FD+L E+
Sbjct: 27 IYIQKHDNVSILFADI----EGFTSLASQCTAQELVMTLNELFARFDKLAAENHCL---- 78
Query: 349 IKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDYRILDED 408
+IK +G Y GL P+ R
Sbjct: 79 -----------------------------------RIKILGDCYYCVSGL-PEAR----- 97
Query: 409 ETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYDIWG 468
+ VE M + + ++ E + N +RVGI+ G V GV+G RK Q+D+W
Sbjct: 98 ----ADHAHCCVEMGMDMIEAISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWS 153
Query: 469 NTVNVASRMDSTGLPNHTQVTEEVYQVLK-NYPYEFQCRGK 508
N V +A+ M++ G +T+ L +Y E C G+
Sbjct: 154 NDVTLANHMEAGGKAGRIHITKATLSYLNGDYEVEPGCGGE 194
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 289 LYHQSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDK 348
+Y Q + V ++FA I E + L E + LNE+ A FD+L E+
Sbjct: 19 IYIQKHDNVSILFADI----EGFTSLASQCTAQELVMTLNELFARFDKLAAENHCL---- 70
Query: 349 IKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDYRILDED 408
+IK +G Y GL P+ R
Sbjct: 71 -----------------------------------RIKILGDCYYCVSGL-PEAR----- 89
Query: 409 ETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYDIWG 468
+ VE M + + ++ E + N +RVGI+ G V GV+G RK Q+D+W
Sbjct: 90 ----ADHAHCCVEMGMDMIEAISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWS 145
Query: 469 NTVNVASRMDSTGLPNHTQVTEEVYQVLK-NYPYEFQCRGK 508
N V +A+ M++ G +T+ L +Y E C G+
Sbjct: 146 NDVTLANHMEAGGKAGRIHITKATLSYLNGDYEVEPGCGGE 186
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 384 KIKTVGSTYMAAVGLMPDYRILDEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFML 443
K++T+G Y A GL ++ + ++ + + + D+++ + +
Sbjct: 59 KVETIGDAYCVAGGL-------HKESDTHAVQIALMALKMMELSDEVMSPHGEPIK---M 108
Query: 444 RVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYP 500
R+G++ G V AGV+G + P+Y ++GN V +A++ +S +P V+ Y++LK+ P
Sbjct: 109 RIGLHSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCP 165
>pdb|3R5G|A Chain A, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
pdb|3R5G|B Chain B, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
Length = 198
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 443 LRVGINIGPVVAGVIGA-RKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYPY 501
+R+GIN G G GA + Y I G VN+ASR++S ++ E Y ++K+
Sbjct: 110 IRMGINTGYCTVGNFGADTRMDYTIIGREVNLASRLESASEAGEILISHETYSLIKDV-- 167
Query: 502 EFQCR--GKVKVKG 513
CR G++ VKG
Sbjct: 168 -IMCRDKGQIAVKG 180
>pdb|3MR7|A Chain A, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
pdb|3MR7|B Chain B, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
pdb|3MR7|C Chain C, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
Length = 189
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 444 RVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYPYE- 502
R+GINIG +V DI+G+ VNVA+R+++ P V++ V+Q+ ++ E
Sbjct: 97 RIGINIGDIVL-------EDGDIFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSEP 149
Query: 503 FQCRGKVKVK 512
F G KVK
Sbjct: 150 FTDLGLQKVK 159
>pdb|1Y10|A Chain A, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|B Chain B, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|C Chain C, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|D Chain D, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y11|A Chain A, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme, Active
State
Length = 407
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 35/142 (24%)
Query: 385 IKTVGSTYMAAVGLMPDYRILDEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNF-ML 443
IKT+G M + PD P L T+++ V + ++ NNF L
Sbjct: 260 IKTIGDAVML---VCPD----------PAPLLDTVLKLVEVV---------DTDNNFPRL 297
Query: 444 RVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYP--- 500
R G+ G V+ D +G+ VNVASR+ P V + V + L + P
Sbjct: 298 RAGVASGMAVSRA-------GDWFGSPVNVASRVTGVARPGAVLVADSVREALGDAPEAD 350
Query: 501 -YEFQCRGKVKVKG-KGDMTTY 520
+++ G +++G +GD+ +
Sbjct: 351 GFQWSFAGPRRLRGIRGDVRLF 372
>pdb|1WC0|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp
pdb|1WC0|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp
pdb|1WC3|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC3|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC4|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC4|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC5|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|D Chain D, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|2BW7|A Chain A, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|B Chain B, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|C Chain C, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|D Chain D, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
Length = 219
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 432 VINENSYNNFMLRVGINIGPVVAGVIGAR-KPQYDIWGNTVNVASRMDSTGLPNHTQVTE 490
++ N R GI+ G V G+ G++ + + G +VN+A+R+ PN V+
Sbjct: 122 LVGRNEVPPVRFRCGIHQGMAVVGLFGSQERSDFTAIGPSVNIAARLQEATAPNSIMVSA 181
Query: 491 EVYQ 494
V Q
Sbjct: 182 MVAQ 185
>pdb|1WC1|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC1|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC1|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC6|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
pdb|1WC6|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
pdb|1WC6|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
Length = 226
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 432 VINENSYNNFMLRVGINIGPVVAGVIGAR-KPQYDIWGNTVNVASRMDSTGLPNHTQVTE 490
++ N R GI+ G V G+ G++ + + G +VN+A+R+ PN V+
Sbjct: 129 LVGRNEVPPVRFRCGIHQGMAVVGLFGSQERSDFTAIGPSVNIAARLQEATAPNSIMVSA 188
Query: 491 EVYQ 494
V Q
Sbjct: 189 MVAQ 192
>pdb|2INY|A Chain A, Nanoporous Crystals Of Chicken Embryo Lethal Orphan (celo)
Adenovirus Major Coat Protein, Hexon
Length = 942
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 568 YEFQCRGKVKVKGKGDMTTYFLTDRKQPGTMRVEELTSLRXXXXXXXXSDVNSVNYDLCY 627
Y+F RG V D TTYF +R+ P T V+ T++ +VN N+ +
Sbjct: 452 YKFSIRGFDPVTDNIDPTTYFYMNRRVPLTNVVDLFTNIGARWSVDQMDNVNPFNHHRNW 511
Query: 628 G 628
G
Sbjct: 512 G 512
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 498 NYPYEFQCRGKVKVKGKGDMTTYFLTDRKQPGTMRVEELTSLRGGA----GLVSLCRCKV 553
+YP F C G++ TYF T +Q L +GGA G V +C
Sbjct: 220 SYPLGFDCANPSTWP-SGNLPTYFHTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAA 278
Query: 554 KVTEEVYQVLKNYPYEF 570
+ E +V + F
Sbjct: 279 LLNHEFERVFYKNDFSF 295
>pdb|2W01|A Chain A, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|B Chain B, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|C Chain C, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|D Chain D, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|E Chain E, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|F Chain F, Crystal Structure Of The Guanylyl Cyclase Cya2
Length = 208
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 420 VEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARK-PQYDIWGNTVNVASRMD 478
VE A+R+ + + +GIN G VV G IG+ K +Y + G VN+ R++
Sbjct: 89 VEMQLALREVNQQVTGLGLQPLEMGIGINTGEVVVGNIGSEKRTKYGVVGAQVNLTYRIE 148
Query: 479 S 479
S
Sbjct: 149 S 149
>pdb|3TZG|A Chain A, Crystal Structure Of A Hypothetical Protein Bvu_2266
(Bvu_2266) From Bacteroides Vulgatus Atcc 8482 At 2.80 A
Resolution
pdb|3TZG|B Chain B, Crystal Structure Of A Hypothetical Protein Bvu_2266
(Bvu_2266) From Bacteroides Vulgatus Atcc 8482 At 2.80 A
Resolution
Length = 252
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 486 TQVTEEVYQVLKNYPYEFQCRGKV------KVKGKGDMTTYFLTDRKQPGTMRVEELTSL 539
T +T E QVLK E+ GK+ V+ +GD T + G +
Sbjct: 14 TDLTGEEEQVLK---LEYDRDGKIIKYGDTPVRYEGDQITIGQXNCLNTGNKLCNVTFQI 70
Query: 540 RGGAGLVSLCRCKVKVTEEVYQVLKNYPYEFQ 571
G S RC +KV EEVY+ K Y+++
Sbjct: 71 GKGKARESRARCXLKVGEEVYEADKQTVYDYK 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,422,303
Number of Sequences: 62578
Number of extensions: 749265
Number of successful extensions: 1320
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1287
Number of HSP's gapped (non-prelim): 35
length of query: 722
length of database: 14,973,337
effective HSP length: 106
effective length of query: 616
effective length of database: 8,340,069
effective search space: 5137482504
effective search space used: 5137482504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)