Query psy9752
Match_columns 722
No_of_seqs 507 out of 2298
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 18:40:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3619|consensus 100.0 2E-75 4.4E-80 675.2 38.1 398 79-523 443-841 (867)
2 KOG3618|consensus 100.0 1.5E-46 3.3E-51 414.6 18.2 262 220-529 1013-1275(1318)
3 KOG4171|consensus 100.0 1.9E-44 4.1E-49 404.0 26.5 238 233-529 385-624 (671)
4 KOG3618|consensus 100.0 2.6E-34 5.5E-39 318.1 30.2 324 146-528 163-530 (1318)
5 KOG3619|consensus 100.0 3.4E-34 7.4E-39 332.8 24.4 245 227-526 34-291 (867)
6 KOG1023|consensus 100.0 3E-34 6.5E-39 319.3 16.8 220 251-528 256-478 (484)
7 PF00211 Guanylate_cyc: Adenyl 100.0 1.9E-32 4.2E-37 271.4 20.5 182 290-524 2-184 (184)
8 smart00044 CYCc Adenylyl- / gu 100.0 8.2E-28 1.8E-32 240.8 21.7 187 258-500 2-189 (194)
9 COG2114 CyaA Adenylate cyclase 99.9 4E-25 8.7E-30 227.7 22.3 196 263-527 22-218 (227)
10 cd07302 CHD cyclase homology d 99.9 8.9E-25 1.9E-29 212.6 22.2 174 296-522 1-177 (177)
11 KOG4171|consensus 99.7 1.5E-17 3.2E-22 188.1 6.3 197 324-615 443-640 (671)
12 KOG1023|consensus 99.2 1.7E-11 3.8E-16 137.7 6.2 180 323-595 296-478 (484)
13 cd07556 Nucleotidyl_cyc_III Cl 98.9 7.8E-08 1.7E-12 88.7 15.9 131 297-486 2-132 (133)
14 PF00211 Guanylate_cyc: Adenyl 97.6 6.6E-06 1.4E-10 81.4 -2.9 66 515-591 118-184 (184)
15 PF07701 HNOBA: Heme NO bindin 93.0 0.4 8.7E-06 49.5 8.5 45 234-278 175-219 (219)
16 PF06327 DUF1053: Domain of Un 92.4 0.042 9.2E-07 49.5 0.3 21 41-64 1-21 (101)
17 PRK10245 adrA diguanylate cycl 88.4 46 0.001 37.0 21.5 58 295-360 235-292 (366)
18 cd07302 CHD cyclase homology d 78.7 1.4 3E-05 42.2 2.3 62 517-589 115-177 (177)
19 PF09726 Macoilin: Transmembra 77.9 17 0.00036 44.0 11.4 23 251-273 182-204 (697)
20 PF05165 GGDN: GGDN family; I 73.9 26 0.00056 36.8 10.1 62 294-361 125-186 (246)
21 smart00044 CYCc Adenylyl- / gu 67.8 2 4.3E-05 42.7 0.5 40 519-569 152-191 (194)
22 COG2114 CyaA Adenylate cyclase 63.0 5.1 0.00011 41.4 2.4 74 507-594 144-218 (227)
23 COG2429 Archaeal GTP cyclohydr 61.5 65 0.0014 33.4 9.8 61 295-362 130-191 (250)
24 PRK15426 putative diguanylate 58.1 2.1E+02 0.0045 33.3 15.0 58 295-360 428-485 (570)
25 PRK02240 GTP cyclohydrolase II 50.7 1.1E+02 0.0025 32.3 9.8 61 294-361 132-194 (254)
26 COG3887 Predicted signaling pr 46.9 5.8E+02 0.012 30.5 21.7 94 299-450 177-270 (655)
27 PLN03223 Polycystin cation cha 45.3 8.6E+02 0.019 32.1 22.4 30 251-280 1436-1470(1634)
28 PRK02240 GTP cyclohydrolase II 31.4 3.9E+02 0.0086 28.4 10.2 59 299-361 4-62 (254)
29 PF10066 DUF2304: Uncharacteri 25.4 5.3E+02 0.011 23.6 10.9 10 176-185 31-40 (115)
30 COG2199 c-di-GMP synthetase (d 25.4 6E+02 0.013 24.3 10.4 58 295-360 50-107 (181)
31 KOG2296|consensus 23.2 1.4E+03 0.029 27.6 16.6 19 239-257 209-227 (673)
32 KOG4700|consensus 22.1 2.1E+02 0.0046 28.7 5.8 60 294-357 65-125 (207)
33 KOG2822|consensus 20.4 7.9E+02 0.017 27.7 10.3 31 152-182 189-219 (407)
No 1
>KOG3619|consensus
Probab=100.00 E-value=2e-75 Score=675.16 Aligned_cols=398 Identities=51% Similarity=0.839 Sum_probs=351.4
Q ss_pred HHHHhhhhhhhhccccchhhHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCCccceecccCCCCCCCCCch-HHHHHH
Q psy9752 79 LLAVRLKWILWDISQSCVLRLAITVFTIVLVYTVAQVNVFTCREDVPCLVPTNTTHTIIWSSTNIDHRACPLP-QYIILS 157 (722)
Q Consensus 79 ~~~~~~~~~~~~~~~s~~~r~~l~i~~i~l~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p-~~~~~~ 157 (722)
+.+..+.|+.+.+..+++.|+.+.++++++++..+++++|.|.....+... .... .......|..| .|+.++
T Consensus 443 ~~~~~l~~~~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~------s~~s~~~~~~~~~~~~~s 515 (867)
T KOG3619|consen 443 LMPDSLQWLSPKIFRTRIARTALSIFTVLIIYMVALINMFACLFSSCIPNH-TITF------SSISERCEAVPQLYFLLS 515 (867)
T ss_pred hhhHhhcccchhhhcchHHHHHHHHHHHHHHHHHHHheeEeeccccccCcc-cccc------ccccccccccCcchhHHH
Confidence 333445555555667889999999999999999999999999887765421 1100 11122234455 788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9752 158 CCLGYLAVALFLRLKIVIKIGLLSFMSVVYILLIELSHRTLFTCYDNKVQSVIPLHITSVVYVLMFLVAVIIHGRQVEWT 237 (722)
Q Consensus 158 ~~l~~~~~~~f~~~~~~~k~~l~~~~~~~y~~~~~~~~~~if~~~~~~~~~~~~~~~~~~~~il~f~~~~~~~~r~~E~~ 237 (722)
++++++++++|.++|++.|+++++++...|.+++.+.+.. ..+.....+.+.++...+.+++|++++++++||+|+.
T Consensus 516 ~~l~~i~~~vf~rl~~~~k~llll~~~~~y~~l~~~~~~~---~~~~~~~~~~~~k~~~~i~l~lf~l~l~~~~Rq~E~~ 592 (867)
T KOG3619|consen 516 CVLGLLSTAVFLRLPFMLKLLLLLIVFAAYGLLIELSYAR---ELDEEPLPYMGLKLMLSILLSLFLLALLLHARQVEYT 592 (867)
T ss_pred HHHHHHHHHheeeccHHHHHHHHHHHHHHHHhheeeeecc---ccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888766543 1234456778899999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHhhhhcccccccccceeeeEEEEEEeecCCccchhhccCC
Q psy9752 238 GRLDFLWQVQACEEKKEMDALQHSNKRILFNLLPSHVAMHFLDNQFRSNMDLYHQSYSKVGVVFASITNYHEFYMELDGN 317 (722)
Q Consensus 238 ~R~~fl~~~q~~~e~~~~~~~~~~~~~LL~niLP~~Va~~ll~~~~~~~~~l~~~~~~~VtVlFaDI~gFt~~~t~l~~~ 317 (722)
+|++|+|+.|+++|+++++++++.|+.||.|+||+|||.+|+.++. +++++|+++|++|+||||+|+||.+||++.+.+
T Consensus 593 ~RlDFLWk~q~~~E~ee~e~m~~~Nr~LLeNiLPaHVA~HFl~~~~-r~~eLY~qSy~~VgVMFASipnF~dFYsE~d~N 671 (867)
T KOG3619|consen 593 ARLDFLWKVQAQEEKEEMETMQNLNRLLLENILPSHVAAHFLGSKK-RNEELYHQSYDCVGVMFASIPNFKDFYSECDVN 671 (867)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhhccc-chHHHHHhhhceEEEEEEecCCcceeeeeecCC
Confidence 9999999999999999999999999999999999999999998864 458999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhcccCCeEEEeEeCcEEEEEEcCCCccccCCCCCCCCccchhhhhhhhccchhhhhhc
Q psy9752 318 NQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVG 397 (722)
Q Consensus 318 ~~~~e~v~lLne~i~~fd~li~~~~f~~veKIK~iGDtyMAa~Gl~p~~~~~~~~~~~~~~~~~v~ki~TiGd~yma~~g 397 (722)
+++.||+|+|||+|++||+++.+.+|.+||||||+|.|||||+||.|+.......
T Consensus 672 neGlECLRlLNEIIaDFDeLL~~pkF~~IEKIKTIGSTYMAAsGL~~~~~~~~~~------------------------- 726 (867)
T KOG3619|consen 672 NEGLECLRLLNEIIADFDELLSKPKFSGVEKIKTIGSTYMAASGLNPTSAQENDQ------------------------- 726 (867)
T ss_pred cccchHHHHHHHHHhhHHHhcCccccccceeEEEecchhhhhhCCChhhhhccCc-------------------------
Confidence 9999999999999999999999999999999999999999999998764321110
Q ss_pred CCCcccccCCCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEccEEEEeeCCCCcceeeecchhhHhhhh
Q psy9752 398 LMPDYRILDEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRM 477 (722)
Q Consensus 398 l~~~~~~~~~~~~~~~~~a~~av~~Al~m~~~l~~in~~~~~~l~lrIGIh~G~VvaGvvG~~k~~YdI~GdtVN~ASRm 477 (722)
+.....|+..+++||++|.+.++.+|.++++++++|||||+|||+|||||++||||||||||||+||||
T Consensus 727 -----------~~~~~~h~~~l~eFAlal~~~L~~IN~~SfNnF~LrIGin~GpvvAGVIGArKPqYDIWGNTVNvASRM 795 (867)
T KOG3619|consen 727 -----------SLRQWSHLGALVEFALALMHKLDEINRHSFNNFELRIGINHGPVVAGVIGARKPQYDIWGNTVNVASRM 795 (867)
T ss_pred -----------chhHHhhHHHHHHHHHHHHHHHHhhhHHhhccceeeeceeccceeeeEecCCCCCccccccchhhhhcc
Confidence 113478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCeEEECHHHHHHHcCCCeeEEEccceEecCCCceEEEEEe
Q psy9752 478 DSTGLPNHTQVTEEVYQVLKNYPYEFQCRGKVKVKGKGDMTTYFLT 523 (722)
Q Consensus 478 estg~~g~I~Vse~t~~~L~~~~~~~~~rG~v~VKGkg~~~tY~l~ 523 (722)
+|||.+|+|||||+|+.+|+..||.|.+||.+.|||||+|.||++.
T Consensus 796 dSTGv~g~IQVTEEt~~iL~~~gy~~~~RG~i~VKGkGel~Tyfl~ 841 (867)
T KOG3619|consen 796 DSTGVPGRIQVTEETANILQGLGYRFECRGVINVKGKGELETYFLC 841 (867)
T ss_pred cccCCCCeEEecHHHHHHHhcCCeeEEecceEEEecccceeEEEec
Confidence 9999999999999999999999999999999999999999999998
No 2
>KOG3618|consensus
Probab=100.00 E-value=1.5e-46 Score=414.56 Aligned_cols=262 Identities=46% Similarity=0.711 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHhhhhcccccccccceeeeEEE
Q psy9752 220 VLMFLVAVIIHGRQVEWTGRLDFLWQVQACEEKKEMDALQHSNKRILFNLLPSHVAMHFLDNQFRSNMDLYHQSYSKVGV 299 (722)
Q Consensus 220 il~f~~~~~~~~r~~E~~~R~~fl~~~q~~~e~~~~~~~~~~~~~LL~niLP~~Va~~ll~~~~~~~~~l~~~~~~~VtV 299 (722)
+++.++.++++.|+.|...|+.|.-..++...+.+++.++.+.+-||.|++|.|||+++..+ .-|.+++++++|
T Consensus 1013 ~~L~lvLVwFLNreFE~~yRl~f~Gdv~A~~d~~riQ~mrdQADwLL~NiIP~HvaE~LK~~------~kYSeNH~~~gv 1086 (1318)
T KOG3618|consen 1013 FFLLLVLVWFLNREFEVSYRLHFHGDVEADLDRTRIQSMRDQADWLLRNIIPYHVAEQLKVS------QKYSENHDSGGV 1086 (1318)
T ss_pred HHHHHHHHHHhhhheeeeEEEEEecchhhchhHHHHHHHHHHHHHHHhccchHHHHHHhhcc------ccccccCccceE
Confidence 34444555678899999999999999999999999999999999999999999999998654 468899999999
Q ss_pred EEEeecCCccchhhccCCCChHHHHHHHHHHHHHHHHHHhhcccCCeEEEeEeCcEEEEEEcCCCccccCCCCCCCCccc
Q psy9752 300 VFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPDRF 379 (722)
Q Consensus 300 lFaDI~gFt~~~t~l~~~~~~~e~v~lLne~i~~fd~li~~~~f~~veKIK~iGDtyMAa~Gl~p~~~~~~~~~~~~~~~ 379 (722)
+||+|+||.++|++-- ..+.|++|+|||+|.+||+++.+..|..+|||||||.+|||++||+|.... +
T Consensus 1087 iFASIvNfnemYeEny--eGGkEflRVLNElIGDFDELLsrPdf~~iEKIKTIG~tyMAASGLnp~~~~---~------- 1154 (1318)
T KOG3618|consen 1087 IFASIVNFNEMYEENY--EGGKEFLRVLNELIGDFDELLSRPDFSSIEKIKTIGATYMAASGLNPAQAQ---D------- 1154 (1318)
T ss_pred EEEEeccHHHHHHHhh--hchHHHHHHHHHHhccHHHHhccccchhhHHHhhhhHHHHHhcCCChHHcc---C-------
Confidence 9999999999887654 347899999999999999999998888899999999999999999876431 1
Q ss_pred hhhhhhhhccchhhhhhcCCCcccccCCCCCChhHHHHHHHHHHHHHHHHHHHHhhcC-CCCceEEEEEEEccEEEEeeC
Q psy9752 380 RAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPGAYLSTLVEFVFAMRDKLIVINENS-YNNFMLRVGINIGPVVAGVIG 458 (722)
Q Consensus 380 ~~v~ki~TiGd~yma~~gl~~~~~~~~~~~~~~~~~a~~av~~Al~m~~~l~~in~~~-~~~l~lrIGIh~G~VvaGvvG 458 (722)
..++.+|...+.+||++|++.++.+|++- +.++.+|||.|.|||.|||||
T Consensus 1155 -----------------------------~~hp~EHl~~l~eFa~amq~Vvd~FN~dlL~Fnf~lrvG~NiGpvTAGVIG 1205 (1318)
T KOG3618|consen 1155 -----------------------------GSHPQEHLQILFEFAKAMQRVVDDFNNDLLWFNFKLRVGFNIGPVTAGVIG 1205 (1318)
T ss_pred -----------------------------CCChHHHHHHHHHHHHHHHHHHHHhhhhhhheeeeEEeeccccCccccccc
Confidence 14568999999999999999999999874 568999999999999999999
Q ss_pred CCCcceeeecchhhHhhhhhccCCCCeEEECHHHHHHHcCCCeeEEEccceEecCCCceEEEEEecCCCCC
Q psy9752 459 ARKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYPYEFQCRGKVKVKGKGDMTTYFLTDRKQPG 529 (722)
Q Consensus 459 ~~k~~YdI~GdtVN~ASRmestg~~g~I~Vse~t~~~L~~~~~~~~~rG~v~VKGkg~~~tY~l~g~~~~~ 529 (722)
..|.-|||||||||+||||++||++.+|||+++++..|.+ .|+|++||.|.||||+.|.||...+++.+.
T Consensus 1206 TtKLyYDIWGDtVNiASRMdsTGv~nRIQVs~~~~~~L~~-rYeFe~Rg~v~VKGkd~M~tyLy~~r~d~~ 1275 (1318)
T KOG3618|consen 1206 TTKLYYDIWGDTVNIASRMDSTGVENRIQVSEESYRVLSK-RYEFEYRGTVNVKGKDQMKTYLYPKRTDHR 1275 (1318)
T ss_pred cceeeehhhcchhhhhhhccccCCcceeEecHHHHHHHHh-hccccccceEEEeccCcceeEEeccccCCC
Confidence 9999999999999999999999999999999999999998 599999999999999999999999887653
No 3
>KOG4171|consensus
Probab=100.00 E-value=1.9e-44 Score=403.99 Aligned_cols=238 Identities=30% Similarity=0.583 Sum_probs=212.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHhhhhcccccccccceeeeEEEEEEeecCCccchh
Q psy9752 233 QVEWTGRLDFLWQVQACEEKKEMDALQHSNKRILFNLLPSHVAMHFLDNQFRSNMDLYHQSYSKVGVVFASITNYHEFYM 312 (722)
Q Consensus 233 ~~E~~~R~~fl~~~q~~~e~~~~~~~~~~~~~LL~niLP~~Va~~ll~~~~~~~~~l~~~~~~~VtVlFaDI~gFt~~~t 312 (722)
+.|...+++-+ +.++++-.++++.++++...||..+||+.||+.|.. +..+..+++++|||||+||+|| +
T Consensus 385 q~el~~~lE~~-~~~Le~~~~~Le~EKkkTd~LLy~mlP~~VA~qLr~-----g~~v~a~~f~~vTilFsdIv~F----t 454 (671)
T KOG4171|consen 385 QLELNLELEKL-KEKLEKMTRELEEEKKKTDTLLYSMLPRSVAQQLRQ-----GESVDAKEFDDVTILFSDIVGF----T 454 (671)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHc-----CCCcCccccCceEEEEeccchH----H
Confidence 35556666665 667777889999999999999999999999999854 4467788999999999999999 5
Q ss_pred hccCCCChHHHHHHHHHHHHHHHHHHhhcccCCeEEEeEeCcEEEEEEcCCCccccCCCCCCCCccchhhhhhhhccchh
Q psy9752 313 ELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTY 392 (722)
Q Consensus 313 ~l~~~~~~~e~v~lLne~i~~fd~li~~~~f~~veKIK~iGDtyMAa~Gl~p~~~~~~~~~~~~~~~~~v~ki~TiGd~y 392 (722)
++...++|.+++.+||++|++||+++..+ +++|++|+||+||+++|+ |+..
T Consensus 455 ~ic~~ctp~~vV~~LN~lyt~fD~~i~~~---~VYKVETIGDaYm~vsG~-P~~~------------------------- 505 (671)
T KOG4171|consen 455 AICSQCTPMQVVNMLNELYTRFDRIIDTH---DVYKVETIGDAYMVVSGL-PDAS------------------------- 505 (671)
T ss_pred hHhhccCcHHHHHHHHHHHHHHHHhhccc---CeEEEeeccchheeecCC-CCCC-------------------------
Confidence 66677889999999999999999999865 899999999999999999 5532
Q ss_pred hhhhcCCCcccccCCCCCChhHHHHHHHHHHHHHHHHHHHHhhc-CCCCceEEEEEEEccEEEEeeCCCCcceeeecchh
Q psy9752 393 MAAVGLMPDYRILDEDETSPGAYLSTLVEFVFAMRDKLIVINEN-SYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTV 471 (722)
Q Consensus 393 ma~~gl~~~~~~~~~~~~~~~~~a~~av~~Al~m~~~l~~in~~-~~~~l~lrIGIh~G~VvaGvvG~~k~~YdI~GdtV 471 (722)
..||..++.+|+.|+...++.-.. ...+++||||||+|||+|||||.+.|+|++|||||
T Consensus 506 --------------------~~HAe~i~~~AL~Mm~~ak~v~~p~~~~pi~iRiGIHsG~VvAGVVG~kmPRYCLFGdTV 565 (671)
T KOG4171|consen 506 --------------------DYHAEHIADLALGMMEEAKEVVSPVTGEPIQIRIGIHSGPVVAGVVGVKMPRYCLFGDTV 565 (671)
T ss_pred --------------------hhHHHHHHHHHHHHHHHhhhhcCcCCCCceEEEEEeccCCeeeeeecccccceeecCCch
Confidence 679999999999999998877544 47799999999999999999999999999999999
Q ss_pred hHhhhhhccCCCCeEEECHHHHHHHcCC-CeeEEEccceEecCCCceEEEEEecCCCCC
Q psy9752 472 NVASRMDSTGLPNHTQVTEEVYQVLKNY-PYEFQCRGKVKVKGKGDMTTYFLTDRKQPG 529 (722)
Q Consensus 472 N~ASRmestg~~g~I~Vse~t~~~L~~~-~~~~~~rG~v~VKGkg~~~tY~l~g~~~~~ 529 (722)
|+||||||.+.|++|+||+.|++.|+.. +|.+++||.+.+||||.|.||||.....+.
T Consensus 566 n~AsrmES~s~p~KI~vS~~T~~~l~~~~~f~f~pRg~v~vk~kg~m~tyFL~~~~~~~ 624 (671)
T KOG4171|consen 566 NLASRMESSSVPGKINVSPTTYRKLKKQGSFEFEPRGRVEVKGKGPMETYFLERSLGPS 624 (671)
T ss_pred hhhhhhhcCCCCceEEeCHHHHHHHHhCCCceeeecCccccCCCCceEEEEEEecCCCC
Confidence 9999999999999999999999999984 499999999999999999999998766544
No 4
>KOG3618|consensus
Probab=100.00 E-value=2.6e-34 Score=318.13 Aligned_cols=324 Identities=23% Similarity=0.384 Sum_probs=243.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCccccchhHHHHHHHHHH---
Q psy9752 146 RACPLPQYIILSCCLGYLAVALFLRLKIVIKIGLLSFMSVVYILLIELSHRTLFTCYDNKVQSVIPLHITSVVYVLM--- 222 (722)
Q Consensus 146 ~~c~~p~~~~~~~~l~~~~~~~f~~~~~~~k~~l~~~~~~~y~~~~~~~~~~if~~~~~~~~~~~~~~~~~~~~il~--- 222 (722)
+.|..|.--+..|+-++++++...++|.++.+.+++ +|.++++........+.-......-++++..+..+++
T Consensus 163 ~af~spvgsfa~c~evvlLiYTv~plPLyL~~~~gi----~YSilFE~~~~~~ig~~~~~~e~aG~~~~~l~~r~~lH~~ 238 (1318)
T KOG3618|consen 163 PAFLSPVGSFAMCIEVVLLIYTVMPLPLYLSLCLGI----AYSILFETFGYHFIGEACFPSEGAGALHWELLSRGLLHGC 238 (1318)
T ss_pred hhhhCchhHHHHHHHHHHHHHHhcchHHHHHHHHHH----HHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHhhh
Confidence 356677767777888888888888899887666554 4544444322211111111111111333332222222
Q ss_pred -HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHhhhhccc-c--------------
Q psy9752 223 -FLVAVIIHGRQVEWTGRLDFLWQVQACEEKKEMDALQHSNKRILFNLLPSHVAMHFLDNQFRS-N-------------- 286 (722)
Q Consensus 223 -f~~~~~~~~r~~E~~~R~~fl~~~q~~~e~~~~~~~~~~~~~LL~niLP~~Va~~ll~~~~~~-~-------------- 286 (722)
-++.+.+. -+.....|..|+.--|..-.++++|.+++-.++++...+|+-||+.++++..+. .
T Consensus 239 vHliGVHlf-im~qVR~R~TFlKVGQs~l~rkdLE~EkqlKe~MIhSVMP~kvAD~Llk~g~~pS~nd~~~~~~~s~~~r 317 (1318)
T KOG3618|consen 239 VHLIGVHLF-IMSQVRSRSTFLKVGQSILHRKDLEVEKQLKERMIHSVMPRKVADDLLKQGDEPSENDVKRHATSSPKNR 317 (1318)
T ss_pred hhhhhhHHH-HHHHHHhhhhHHHhhHHHHhhhhhHHHHHHHHHHHHhhcChHHHHHHHhhcCCCCcccccCCCCCCcccc
Confidence 12222111 112234578888777888888899999999999999999999999999753100 0
Q ss_pred -------------cccccceeeeEEEEEEeecCCccchhhccCCCChHHHHHHHHHHHHHHHHHHhhcccCCeEEEeEeC
Q psy9752 287 -------------MDLYHQSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVG 353 (722)
Q Consensus 287 -------------~~l~~~~~~~VtVlFaDI~gFt~~~t~l~~~~~~~e~v~lLne~i~~fd~li~~~~f~~veKIK~iG 353 (722)
...-.+..++|+|+||||+|| |.++.++++.+++.+||++|.+||+++... ++|||.|+|
T Consensus 318 ~~~s~~vk~~~~FRPF~M~~menVSILFADIvGF----TkMSsnKsA~~LV~lLNDLFgRFD~LC~l~---gcEKISTLG 390 (1318)
T KOG3618|consen 318 KKKSSIVKAPIAFRPFKMQQMENVSILFADIVGF----TKMSSNKSAHALVGLLNDLFGRFDRLCELT---GCEKISTLG 390 (1318)
T ss_pred cchhhccccccccCchhhhhhhhhhhhhhhhhch----hhccccccHHHHHHHHHHHHHHHHHHHHhc---Ccchhcccc
Confidence 011123456899999999999 789999999999999999999999999874 899999999
Q ss_pred cEEEEEEcCCCccccCCCCCCCCccchhhhhhhhccchhhhhhcCCCcccccCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy9752 354 STYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPGAYLSTLVEFVFAMRDKLIVI 433 (722)
Q Consensus 354 DtyMAa~Gl~p~~~~~~~~~~~~~~~~~v~ki~TiGd~yma~~gl~~~~~~~~~~~~~~~~~a~~av~~Al~m~~~l~~i 433 (722)
|+|.|+.|. |+++ .+|+.+++++.+.|+++++++
T Consensus 391 DCYYCVaGC-PEPr---------------------------------------------aDHA~ccvEMGLgMI~AirqF 424 (1318)
T KOG3618|consen 391 DCYYCVAGC-PEPR---------------------------------------------ADHAYCCVEMGLGMIKAIRQF 424 (1318)
T ss_pred ceeeeecCC-CCCc---------------------------------------------ccceeeehhhcchHHHHHHHH
Confidence 999999999 5543 578999999999999999999
Q ss_pred hhcCCCCceEEEEEEEccEEEEeeCCCCcceeeecchhhHhhhhhccCCCCeEEECHHHHHHHcCCCeeEEE------cc
Q psy9752 434 NENSYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYPYEFQC------RG 507 (722)
Q Consensus 434 n~~~~~~l~lrIGIh~G~VvaGvvG~~k~~YdI~GdtVN~ASRmestg~~g~I~Vse~t~~~L~~~~~~~~~------rG 507 (722)
.++.....+||+|||+|.|++|++|.++..||+|.|.||+|..||+.|++|++||||+|+..|++ .|..++ .|
T Consensus 425 d~~r~e~VnMRVGvHTGtVlCGivGtrRfKFDVwSNDV~LAN~MEssGvag~VHiSeaTak~L~d-~Ye~EeG~~~~g~~ 503 (1318)
T KOG3618|consen 425 DQERKEMVNMRVGVHTGTVLCGIVGTRRFKFDVWSNDVNLANLMESSGVAGKVHISEATAKYLDD-RYEMEEGKVIEGLG 503 (1318)
T ss_pred HHHhhcccceEEEEecceEEeeeeecceEeeeeccCcchHHHHHHhcCCCcceEeeHHHHHHhcc-cceeccCccccccc
Confidence 99888899999999999999999999999999999999999999999999999999999999987 455543 44
Q ss_pred ceEecCC------CceEEEEEecCCCC
Q psy9752 508 KVKVKGK------GDMTTYFLTDRKQP 528 (722)
Q Consensus 508 ~v~VKGk------g~~~tY~l~g~~~~ 528 (722)
+..|.|. +.+.||++.|....
T Consensus 504 ~~~V~g~~rRtnP~t~kt~li~G~~ga 530 (1318)
T KOG3618|consen 504 QSVVAGQLRRTNPGTLKTYLISGQRGA 530 (1318)
T ss_pred eeEEeceeeecCCcccceEEecCcccc
Confidence 5556663 34889999887643
No 5
>KOG3619|consensus
Probab=100.00 E-value=3.4e-34 Score=332.81 Aligned_cols=245 Identities=29% Similarity=0.493 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHhhhhcc---------cccccccceeeeE
Q psy9752 227 VIIHGRQVEWTGRLDFLWQVQACEEKKEMDALQHSNKRILFNLLPSHVAMHFLDNQFR---------SNMDLYHQSYSKV 297 (722)
Q Consensus 227 ~~~~~r~~E~~~R~~fl~~~q~~~e~~~~~~~~~~~~~LL~niLP~~Va~~ll~~~~~---------~~~~l~~~~~~~V 297 (722)
-++..++.|...|..|+.++++.+.+.+++.++++.++||.++||+||+..+.++... .-+.+|.+.|++|
T Consensus 34 G~~~~~~~e~~~r~~f~~~~~~i~~r~~l~~~~~~qerlllsvlp~~va~~m~~~i~~~~~~~~~~~~f~~iy~~~h~nV 113 (867)
T KOG3619|consen 34 GIFTKYMMERAQRQAFLETRKCIEVRMELETEKQQQERLLLSVLPAHVAMEMKKDIIESSARCKNDNQFHKLYIQRHDNV 113 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcchhhhccchhheeeccch
Confidence 3455677999999999999999999999999999999999999999999998765321 2357899999999
Q ss_pred EEEEEeecCCccchhhccCCCChHHHHHHHHHHHHHHHHHHhhcccCCeEEEeEeCcEEEEEEcCCCccccCCCCCCCCc
Q psy9752 298 GVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPD 377 (722)
Q Consensus 298 tVlFaDI~gFt~~~t~l~~~~~~~e~v~lLne~i~~fd~li~~~~f~~veKIK~iGDtyMAa~Gl~p~~~~~~~~~~~~~ 377 (722)
+|+||||+|| |.++..++++|.+++|||+|++||++..++ .+.+||.+||+|.|++|+ |+++
T Consensus 114 SIl~adivgf----t~l~s~~saqelv~~LneLf~rfd~lA~~~---~clRiKiLGdcyyCvsgl-p~~~---------- 175 (867)
T KOG3619|consen 114 SILFADIVGF----TQLASQCSAQELVKVLNELFARFDRLAAEN---HCLRIKILGDCYYCVSGL-PEAR---------- 175 (867)
T ss_pred HhhHHHHhhh----hhhhcCCCHHHHHHHHHHHHHHHHHHHHhc---ceEeeeeecceeEEecCC-CCCC----------
Confidence 9999999999 667777888899999999999999999986 689999999999999999 4432
Q ss_pred cchhhhhhhhccchhhhhhcCCCcccccCCCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEccEEEEee
Q psy9752 378 RFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVI 457 (722)
Q Consensus 378 ~~~~v~ki~TiGd~yma~~gl~~~~~~~~~~~~~~~~~a~~av~~Al~m~~~l~~in~~~~~~l~lrIGIh~G~VvaGvv 457 (722)
++||..++++.++|.+++....+....++.||||||+|+|.+||+
T Consensus 176 -----------------------------------~dHA~~~v~mgl~Mi~aI~~vr~at~~dvnmrvGihsG~Vl~Gvl 220 (867)
T KOG3619|consen 176 -----------------------------------PDHAVCCVEMGLDMIKAIKQVREATGVDVNMRVGIHSGSVLCGVL 220 (867)
T ss_pred -----------------------------------hhHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCceeeccc
Confidence 789999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeecchhhHhhhhhccCCCCeEEECHHHHHHHcCCCeeEEEccc--e--EecCCCceEEEEEecCC
Q psy9752 458 GARKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYPYEFQCRGK--V--KVKGKGDMTTYFLTDRK 526 (722)
Q Consensus 458 G~~k~~YdI~GdtVN~ASRmestg~~g~I~Vse~t~~~L~~~~~~~~~rG~--v--~VKGkg~~~tY~l~g~~ 526 (722)
|.+|+||||||+.|.+|.+||+.|.||++|||++|.+.|.. .|+.++.-- - .+| +-.++||++....
T Consensus 221 G~~kwq~DVws~dv~lAn~mEs~G~pgrVhis~~Tl~~L~g-~yeve~g~g~~r~~~l~-~~~~~ty~i~~~~ 291 (867)
T KOG3619|consen 221 GLRKWQYDVWSNDVTLANHMEAGGVPGRVHISKATLDCLNG-EYEVEPGHGGERDPYLK-EHGIETYLIIPPS 291 (867)
T ss_pred ccceeeeeeccchhhhhhhhhhcCCCceeEechhHHHHhCC-CceeecCCCcccchHHH-hcCCceEEecccc
Confidence 99999999999999999999999999999999999999987 566654211 0 111 2258899997643
No 6
>KOG1023|consensus
Probab=100.00 E-value=3e-34 Score=319.34 Aligned_cols=220 Identities=29% Similarity=0.513 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHhhhhcccccccccceeeeEEEEEEeecCCccchhhccCCCChHHHHHHHHHH
Q psy9752 251 EKKEMDALQHSNKRILFNLLPSHVAMHFLDNQFRSNMDLYHQSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEI 330 (722)
Q Consensus 251 e~~~~~~~~~~~~~LL~niLP~~Va~~ll~~~~~~~~~l~~~~~~~VtVlFaDI~gFt~~~t~l~~~~~~~e~v~lLne~ 330 (722)
...++++++.+...||.++||+.||+.+..+ .....+.+++|||+|+||+|| |.++.+++|.+++.+||++
T Consensus 256 Rt~~l~~e~~k~d~LL~~mLP~~VA~~lk~G-----~~v~pe~~~~vti~fsDiv~f----T~l~~~~~P~~vv~~lNdl 326 (484)
T KOG1023|consen 256 RTAELEEEKKKTDTLLGQMLPKSVAESLKLG-----KTVDPESFDSVTIYFSDIVGF----TVLSSNSTPIQVVTLLNDL 326 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHhhHhhcC-----CcCCccccCceeeeeHHHHHH----HHHHhcCCCceeeeeccch
Confidence 4567788888999999999999999988554 456678899999999999999 6777888999999999999
Q ss_pred HHHHHHHHhhcccCCeEEEeEeCcEEEEEEcCCCccccCCCCCCCCccchhhhhhhhccchhhhhhcCCCcccccCCCCC
Q psy9752 331 IADFDELLGEDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDET 410 (722)
Q Consensus 331 i~~fd~li~~~~f~~veKIK~iGDtyMAa~Gl~p~~~~~~~~~~~~~~~~~v~ki~TiGd~yma~~gl~~~~~~~~~~~~ 410 (722)
++.||.++.+| +++|+.++||+||+++|+| ...
T Consensus 327 yt~Fd~ii~~~---d~yKVetiGDaYmvvSglp-~~n------------------------------------------- 359 (484)
T KOG1023|consen 327 YTTFDRIIDKH---DVYKVETIGDAYMVVSGLP-IRN------------------------------------------- 359 (484)
T ss_pred HHhhhhccccc---CCeeEeccCcceeecccCc-eec-------------------------------------------
Confidence 99999999986 7999999999999999994 321
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhc--CCCCceEEEEEEEccEEEEeeCCCCcceeeecchhhHhhhhhccCCCCeEEE
Q psy9752 411 SPGAYLSTLVEFVFAMRDKLIVINEN--SYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLPNHTQV 488 (722)
Q Consensus 411 ~~~~~a~~av~~Al~m~~~l~~in~~--~~~~l~lrIGIh~G~VvaGvvG~~k~~YdI~GdtVN~ASRmestg~~g~I~V 488 (722)
...|+...+.+++++++.+..+.-. ....+++|||+|+|||+|||+|.+.|+|+.+|||||+|||||++|+ ++||+
T Consensus 360 -~~~H~~eia~msl~~~~~~~~f~i~H~P~~~l~iRig~~sg~~~agVvgl~mPRYclFgDtvn~AsrMes~G~-~~i~~ 437 (484)
T KOG1023|consen 360 -GYRHAREIASMALGLRSFLESFSLPHRPWEKLRLRIGFHSGPVVAGVVGLKMPRYCLFGDTVNTASRMESNGK-LMIHL 437 (484)
T ss_pred -HhHHHHHHHHHHHHHHHHHhccCCCCCCchhhheeeccccCCceecccccCCCcccchhhHHHHHhhhhhcCC-eEEEe
Confidence 1449999999999999999887633 4567999999999999999999999999999999999999999999 99999
Q ss_pred CHHHHHHHcC-CCeeEEEccceEecCCCceEEEEEecCCCC
Q psy9752 489 TEEVYQVLKN-YPYEFQCRGKVKVKGKGDMTTYFLTDRKQP 528 (722)
Q Consensus 489 se~t~~~L~~-~~~~~~~rG~v~VKGkg~~~tY~l~g~~~~ 528 (722)
|++++.+|.. .+|..+.||.+.+||||.+.|||+.|.+..
T Consensus 438 s~~~~~~l~~~~~~~~e~rG~v~~kgkg~~~t~wl~g~~~~ 478 (484)
T KOG1023|consen 438 SEEAKNLLTERPQFETEERGLVELKGKGVMSTYWLLGESSK 478 (484)
T ss_pred cHHHHHHHHhcCceeeeccCcEEeecCceeeeEEeccCccc
Confidence 9999999965 378999999999999999999999998753
No 7
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=100.00 E-value=1.9e-32 Score=271.43 Aligned_cols=182 Identities=35% Similarity=0.644 Sum_probs=164.1
Q ss_pred ccceeeeEEEEEEeecCCccchhhccCCCChHHHHHHHHHHHHHHHHHHhhcccCCeEEEeEeCcEEEEEEcCCCccccC
Q psy9752 290 YHQSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAVGLMPDYRIL 369 (722)
Q Consensus 290 ~~~~~~~VtVlFaDI~gFt~~~t~l~~~~~~~e~v~lLne~i~~fd~li~~~~f~~veKIK~iGDtyMAa~Gl~p~~~~~ 369 (722)
|.+.+++|||||+||+|||++ .+..++.+++++||+++..+++++.++ +++++|++||+|||+||.+ .
T Consensus 2 ~~~~~~~vtvlf~di~~ft~l----~~~~~~~~~~~~l~~~~~~~~~~v~~~---~g~~~~~~Gd~~~~~f~~~-~---- 69 (184)
T PF00211_consen 2 YSEQYRNVTVLFADIVGFTDL----TEQLDPEELVRLLNDFFSSLDRIVKQH---GGEIIKFIGDGVMAVFGLP-E---- 69 (184)
T ss_dssp EEEEEEEEEEEEEEETTHHHH----HHHSHHHHHHHHHHHHHHHHHHHHHHT---TEEEEEEETTEEEEEESSS-S----
T ss_pred CccccCeEEEEEEEecCcHHH----HHhCCchhHHHHHHHHHHHhhhccccc---cccccccccceeEEEeccc-c----
Confidence 668899999999999999554 444557899999999999999999986 6999999999999999994 2
Q ss_pred CCCCCCCccchhhhhhhhccchhhhhhcCCCcccccCCCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEE
Q psy9752 370 DEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINI 449 (722)
Q Consensus 370 ~~~~~~~~~~~~v~ki~TiGd~yma~~gl~~~~~~~~~~~~~~~~~a~~av~~Al~m~~~l~~in~~~~~~l~lrIGIh~ 449 (722)
...+++..++++|++|++.++.++.....++.+|||||+
T Consensus 70 -----------------------------------------~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~rIGI~~ 108 (184)
T PF00211_consen 70 -----------------------------------------PDEDAAERAVQFALALLEALERLNKESGPPLSVRIGIHT 108 (184)
T ss_dssp -----------------------------------------CHCHHHHHHHHHHHHHHHHHHHHHHHHHSS-EEEEEEEE
T ss_pred -----------------------------------------ccccccccccccccchhhcccccccccceeeeeeccccc
Confidence 125678899999999999999998777789999999999
Q ss_pred ccEEEEeeCCCCcceeeecchhhHhhhhhccCCCCeEEECHHHHHHHc-CCCeeEEEccceEecCCCceEEEEEec
Q psy9752 450 GPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLK-NYPYEFQCRGKVKVKGKGDMTTYFLTD 524 (722)
Q Consensus 450 G~VvaGvvG~~k~~YdI~GdtVN~ASRmestg~~g~I~Vse~t~~~L~-~~~~~~~~rG~v~VKGkg~~~tY~l~g 524 (722)
|+|++|++|..+++||+||++||+|+||++.+.+++|+||+++++.|. ...|.++++|.+.+||++++.+|+|.|
T Consensus 109 G~v~~g~~G~~~~~~~v~G~~vn~Aarl~~~a~~~~i~vs~~v~~~l~~~~~~~~~~~g~~~lkG~~~~~~y~~~~ 184 (184)
T PF00211_consen 109 GPVVVGVVGSRRPEYDVFGDAVNIAARLESLAPPGQILVSEEVYDALNESDQFRFEELGRVELKGKGPVQTYQLNG 184 (184)
T ss_dssp EEEEEEEEESSSEEEEEESHHHHHHHHHHHTSSTTSEEEEHHHHHHHTTHTTEEEEEEEEEEETTSSEEEEEEEE-
T ss_pred cccccccccCcccceeeeehhhhhhHHHHHhhcccccccCHHHHHHhcccCceEEEEeeeEEEecCCCcEEEEEEC
Confidence 999999999888999999999999999999999999999999999999 258999999999999999999999965
No 8
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=99.96 E-value=8.2e-28 Score=240.80 Aligned_cols=187 Identities=31% Similarity=0.519 Sum_probs=162.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHhhhhcccccccccceeeeEEEEEEeecCCccchhhccCCCChHHHHHHHHHHHHHHHHH
Q psy9752 258 LQHSNKRILFNLLPSHVAMHFLDNQFRSNMDLYHQSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDEL 337 (722)
Q Consensus 258 ~~~~~~~LL~niLP~~Va~~ll~~~~~~~~~l~~~~~~~VtVlFaDI~gFt~~~t~l~~~~~~~e~v~lLne~i~~fd~l 337 (722)
++++++++|.+|||++|++.+..+. ......+++++||+|+||+||| .+.+...+.++.++||+++..++++
T Consensus 2 ~~~~~~~ll~~~lP~~v~~~l~~g~----~~~~~~~~~~~tvlf~di~g~t----~l~~~~~~~~~~~~l~~~~~~~~~~ 73 (194)
T smart00044 2 EKRKTDRLLDQLLPASVAESLKRGG----SPVPAESYDNVTILFTDIVGFT----TLSSEATPEQVVTLLNDLYSRFDRI 73 (194)
T ss_pred hHHHHHHHHHHhCCHHHHHHHHhCC----CCccccccCeEEEEEeEhhhhh----hhhhhCCHHHHHHHHHHHHHHHHHH
Confidence 4667788999999999999997652 2345677899999999999995 5555567889999999999999999
Q ss_pred HhhcccCCeEEEeEeCcEEEEEEcCCCccccCCCCCCCCccchhhhhhhhccchhhhhhcCCCcccccCCCCCChhHHHH
Q psy9752 338 LGEDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPGAYLS 417 (722)
Q Consensus 338 i~~~~f~~veKIK~iGDtyMAa~Gl~p~~~~~~~~~~~~~~~~~v~ki~TiGd~yma~~gl~~~~~~~~~~~~~~~~~a~ 417 (722)
+.++ +++++|++||++||+||.+... ..+|+.
T Consensus 74 i~~~---gg~v~~~~Gd~~l~~F~~~~~~---------------------------------------------~~~~a~ 105 (194)
T smart00044 74 IDRH---GGYKVKTIGDAYMVVSGLPTEA---------------------------------------------LVDHAE 105 (194)
T ss_pred HHhc---CeEEEEEeCCEEEEEECCCCCc---------------------------------------------chHHHH
Confidence 9986 7899999999999999984221 146889
Q ss_pred HHHHHHHHHHHHHHHHhhc-CCCCceEEEEEEEccEEEEeeCCCCcceeeecchhhHhhhhhccCCCCeEEECHHHHHHH
Q psy9752 418 TLVEFVFAMRDKLIVINEN-SYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVL 496 (722)
Q Consensus 418 ~av~~Al~m~~~l~~in~~-~~~~l~lrIGIh~G~VvaGvvG~~k~~YdI~GdtVN~ASRmestg~~g~I~Vse~t~~~L 496 (722)
.++.+|+++++.+..++.. ...++.+|||||+|+|++|.+|..+++||+||++||.|+||++.+.+|+|++|+++++.|
T Consensus 106 ~a~~~al~l~~~~~~~~~~~~~~~l~~riGih~G~v~~~~~g~~~~~~~~~G~~vn~AarL~~~a~~g~i~vs~~~~~~l 185 (194)
T smart00044 106 LAADEALDMVESLKTVLSQHRGNGLRVRIGIHTGPVVAGVVGITMPRYCLFGDTVNLASRMESVGDPGQILVSEETYSLL 185 (194)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCeeEEEEEeccceEEEecCCCCceeEEeChHHHHHHHHHhcCCCCeEEECHHHHHHH
Confidence 9999999999999888754 367899999999999999999998889999999999999999999999999999999999
Q ss_pred cCCC
Q psy9752 497 KNYP 500 (722)
Q Consensus 497 ~~~~ 500 (722)
+..+
T Consensus 186 ~~~~ 189 (194)
T smart00044 186 RRRG 189 (194)
T ss_pred HhhC
Confidence 7533
No 9
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=99.94 E-value=4e-25 Score=227.67 Aligned_cols=196 Identities=23% Similarity=0.368 Sum_probs=153.3
Q ss_pred HHHHHccCCHHHHHHHhhhhcccccccccceeeeEEEEEEeecCCccchhhccCCCChHHHHHHHHHHHHHHHHHHhhcc
Q psy9752 263 KRILFNLLPSHVAMHFLDNQFRSNMDLYHQSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDR 342 (722)
Q Consensus 263 ~~LL~niLP~~Va~~ll~~~~~~~~~l~~~~~~~VtVlFaDI~gFt~~~t~l~~~~~~~e~v~lLne~i~~fd~li~~~~ 342 (722)
...+.++++..+.+.+... . .. . +.+||||+||+|| |++++..++.+...+||+++..+++++.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~----~--~~--~-~~vtilfaDi~g~----T~l~~~~~~~~~~~ll~~~~~~~~~~v~~~- 87 (227)
T COG2114 22 DLVLRLYLARVVGRLLARG----G--AG--D-RRVTLLFADIVGS----TELSESLGDEALVELLNLYFDAVAEVVARH- 87 (227)
T ss_pred hHHHHHHhhhccchhhccc----c--cc--C-ceEEEEEEeeccc----hHHhhhCCHHHHHHHHHHHHHHHHHHHHHc-
Confidence 3456666666666655322 1 11 1 8999999999999 667777788899999999999999999987
Q ss_pred cCCeEEEeEeCcEEEEEEcCCCccccCCCCCCCCccchhhhhhhhccchhhhhhcCCCcccccCCCCCChhHHHHHHHHH
Q psy9752 343 FRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPGAYLSTLVEF 422 (722)
Q Consensus 343 f~~veKIK~iGDtyMAa~Gl~p~~~~~~~~~~~~~~~~~v~ki~TiGd~yma~~gl~~~~~~~~~~~~~~~~~a~~av~~ 422 (722)
++.++|++||++||+||.+ .+. .+...++.+.
T Consensus 88 --gG~v~k~iGD~~la~F~~p-~~~---------------------------------------------~~A~~~a~~~ 119 (227)
T COG2114 88 --GGRVVKFIGDGFLAVFGRP-SPL---------------------------------------------EDAVACALDL 119 (227)
T ss_pred --CCEEEEEecceEEEEeCCC-CCc---------------------------------------------HHHHHHHHHH
Confidence 7889999999999999994 311 1122222224
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEEEEccEEEEeeCCCCcceeeecchhhHhhhhhccCCCCeEEECHHHHHHHcCCCee
Q psy9752 423 VFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYPYE 502 (722)
Q Consensus 423 Al~m~~~l~~in~~~~~~l~lrIGIh~G~VvaGvvG~~k~~YdI~GdtVN~ASRmestg~~g~I~Vse~t~~~L~~~~~~ 502 (722)
+++|.+.....+.+. +++|||||+|+|++|.+|. ||+||++||+|+|||+.+.+|+|.+|+++++.++.....
T Consensus 120 ~~~~~~~~~~~~~~~---l~~riGi~~G~vv~~~~g~----~~~~G~~VN~AaRLe~~a~~g~i~iS~~~~~~~~~~~~~ 192 (227)
T COG2114 120 QLALRNPLARLRRES---LRVRIGIHTGEVVVGNTGG----YTVVGSAVNQAARLESLAKPGQVLLSEATYDLVRDLVDL 192 (227)
T ss_pred HHHHHHHHhhccCcC---eeEEEEEEeecEEEEeecC----eeEechHhHHHHHHHHhcCCCeEEEcHHHHHHHhhhhhh
Confidence 556655555544333 9999999999999999998 999999999999999999999999999999999832467
Q ss_pred EEEccceEecCCC-ceEEEEEecCCC
Q psy9752 503 FQCRGKVKVKGKG-DMTTYFLTDRKQ 527 (722)
Q Consensus 503 ~~~rG~v~VKGkg-~~~tY~l~g~~~ 527 (722)
+...|...+||+. .+..|.+.+...
T Consensus 193 ~~~~g~~~lkg~~~~~~v~~~~~~~~ 218 (227)
T COG2114 193 FSGLGSHRLKGLARPVRVYQLCHRSL 218 (227)
T ss_pred hhcCCceecCCCCCceEEEEeccccc
Confidence 7788999999975 477777766543
No 10
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=99.93 E-value=8.9e-25 Score=212.60 Aligned_cols=174 Identities=35% Similarity=0.574 Sum_probs=155.8
Q ss_pred eEEEEEEeecCCccchhhccCCCChHHHHHHHHHHHHHHHHHHhhcccCCeEEEeEeCcEEEEEEcCCCccccCCCCCCC
Q psy9752 296 KVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETS 375 (722)
Q Consensus 296 ~VtVlFaDI~gFt~~~t~l~~~~~~~e~v~lLne~i~~fd~li~~~~f~~veKIK~iGDtyMAa~Gl~p~~~~~~~~~~~ 375 (722)
+++|+|+||+||+ .+....++.+++++||.++..+++++.++ +++++|+.||++|++|+.+..
T Consensus 1 ~~~il~~di~~~t----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~g~~~~~~gd~~~~~f~~~~~---------- 63 (177)
T cd07302 1 EVTVLFADIVGFT----ALSERLGPEELVELLNEYFSAFDEIIERH---GGTVDKTIGDAVMAVFGLPGA---------- 63 (177)
T ss_pred CEEEEEEEccChH----HHHhcCCHHHHHHHHHHHHHHHHHHHHHc---CCEEEEEeCceEEEEeCCCCC----------
Confidence 4899999999995 55555578899999999999999999985 789999999999999998522
Q ss_pred CccchhhhhhhhccchhhhhhcCCCcccccCCCCCChhHHHHHHHHHHHHHHHHHHHHhhc--CCCCceEEEEEEEccEE
Q psy9752 376 PDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPGAYLSTLVEFVFAMRDKLIVINEN--SYNNFMLRVGINIGPVV 453 (722)
Q Consensus 376 ~~~~~~v~ki~TiGd~yma~~gl~~~~~~~~~~~~~~~~~a~~av~~Al~m~~~l~~in~~--~~~~l~lrIGIh~G~Vv 453 (722)
..+++..|+++|++|++.+...+.. ....+.+|||||+|+++
T Consensus 64 ------------------------------------~~~~~~~A~~~a~~i~~~~~~~~~~~~~~~~~~~riGi~~G~~~ 107 (177)
T cd07302 64 ------------------------------------HEDHAERAVRAALEMQEALAELNAEREGGPPLRLRIGIHTGPVV 107 (177)
T ss_pred ------------------------------------chhHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEecceEE
Confidence 2568899999999999999998865 66789999999999999
Q ss_pred EEeeCCCCcceeeecchhhHhhhhhccCCCCeEEECHHHHHHHcCCCeeEEEccceEecCC-CceEEEEE
Q psy9752 454 AGVIGARKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYPYEFQCRGKVKVKGK-GDMTTYFL 522 (722)
Q Consensus 454 aGvvG~~k~~YdI~GdtVN~ASRmestg~~g~I~Vse~t~~~L~~~~~~~~~rG~v~VKGk-g~~~tY~l 522 (722)
+|.+|..+++|++||++||+|+||++.+.+|+|++|+++++.+....+.+.+.|.+.+||. +.+++|.+
T Consensus 108 ~g~~g~~~~~~~~~G~~v~~A~rl~~~a~~~~i~vs~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~y~~ 177 (177)
T cd07302 108 AGVVGSERPEYTVIGDTVNLAARLESLAKPGQILVSEATYELLGDAGFEFEELGEVELKGKSGPVRVYRL 177 (177)
T ss_pred EEecCCCCcceeEecchHhHHHHHHhcCCCCEEEECHHHHHhhccCceEEEEeCCEEecCCCCceEEEEC
Confidence 9999999889999999999999999999999999999999999865699999999999997 56888853
No 11
>KOG4171|consensus
Probab=99.69 E-value=1.5e-17 Score=188.12 Aligned_cols=197 Identities=24% Similarity=0.366 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHhhcccCCeEEEeEeCcEEEEEEcCCCccccCCCCCCCCccchhhhhhhhccchhhhhhcCCCccc
Q psy9752 324 LRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDYR 403 (722)
Q Consensus 324 v~lLne~i~~fd~li~~~~f~~veKIK~iGDtyMAa~Gl~p~~~~~~~~~~~~~~~~~v~ki~TiGd~yma~~gl~~~~~ 403 (722)
+.+|..-+..|..++... ...+.|+++++-|-.+.-+. + ++.++|||||||+||+++|+
T Consensus 443 vTilFsdIv~Ft~ic~~c--tp~~vV~~LN~lyt~fD~~i-~-------------~~~VYKVETIGDaYm~vsG~----- 501 (671)
T KOG4171|consen 443 VTILFSDIVGFTAICSQC--TPMQVVNMLNELYTRFDRII-D-------------THDVYKVETIGDAYMVVSGL----- 501 (671)
T ss_pred eEEEEeccchHHhHhhcc--CcHHHHHHHHHHHHHHHHhh-c-------------ccCeEEEeeccchheeecCC-----
Confidence 444555555666666543 24555666665555443331 1 34599999999999999998
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEccEEEEeeCCCCcceeeecchhhHhhhhhccCCC
Q psy9752 404 ILDEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLP 483 (722)
Q Consensus 404 ~~~~~~~~~~~~a~~av~~Al~m~~~l~~in~~~~~~l~lrIGIh~G~VvaGvvG~~k~~YdI~GdtVN~ASRmestg~~ 483 (722)
++.....|+.++.|.-.+-..-. .|+. ..++.|
T Consensus 502 ---------P~~~~~HAe~i~~~AL~Mm~~ak---------------~v~~-----------------------p~~~~p 534 (671)
T KOG4171|consen 502 ---------PDASDYHAEHIADLALGMMEEAK---------------EVVS-----------------------PVTGEP 534 (671)
T ss_pred ---------CCCChhHHHHHHHHHHHHHHHhh---------------hhcC-----------------------cCCCCc
Confidence 67778888887776544422111 1110 012445
Q ss_pred CeEEECHHHHHHHcCCCeeEEEccceEecCCCceEEEEEecCCCCCCcccccccccccCCCccccccccccccHHHHHhh
Q psy9752 484 NHTQVTEEVYQVLKNYPYEFQCRGKVKVKGKGDMTTYFLTDRKQPGTMRVEELTSLRGGAGLVSLCRCKVKVTEEVYQVL 563 (722)
Q Consensus 484 g~I~Vse~t~~~L~~~~~~~~~rG~v~VKGkg~~~tY~l~g~~~~~~~~v~~~s~~~s~~G~~~~~r~kIqVSe~t~~~L 563 (722)
-+|.++-++-.++.+ |-|. +||+|||+|+++ +.+++|+| .|.| +|||||+.||++|
T Consensus 535 i~iRiGIHsG~VvAG------------VVG~-kmPRYCLFGdTV------n~AsrmES-~s~p----~KI~vS~~T~~~l 590 (671)
T KOG4171|consen 535 IQIRIGIHSGPVVAG------------VVGV-KMPRYCLFGDTV------NLASRMES-SSVP----GKINVSPTTYRKL 590 (671)
T ss_pred eEEEEEeccCCeeee------------eecc-cccceeecCCch------hhhhhhhc-CCCC----ceEEeCHHHHHHH
Confidence 455554444333332 3332 799999999975 45677777 6677 9999999999999
Q ss_pred cCCC-ccccccceeEecCcceeeEEeeccCCCCCCCchhhhhcccCCCCCCcc
Q psy9752 564 KNYP-YEFQCRGKVKVKGKGDMTTYFLTDRKQPGTMRVEELTSLRGGAGLGAL 615 (722)
Q Consensus 564 ~~~~-~~~~~rG~v~vKGKg~m~ty~L~~~~~~~~~~~~~i~~~~~~~~~~~~ 615 (722)
+..+ |++++||+|+|||||+|.||||..+..+. .++..+.+++.+.+++
T Consensus 591 ~~~~~f~f~pRg~v~vk~kg~m~tyFL~~~~~~~---~~~~~~~~~~~~~~s~ 640 (671)
T KOG4171|consen 591 KKQGSFEFEPRGRVEVKGKGPMETYFLERSLGPS---IWEPCSRRRDVSDNSI 640 (671)
T ss_pred HhCCCceeeecCccccCCCCceEEEEEEecCCCC---CCccccccCCcccccc
Confidence 8877 99999999999999999999999987643 3444444444444444
No 12
>KOG1023|consensus
Probab=99.19 E-value=1.7e-11 Score=137.67 Aligned_cols=180 Identities=23% Similarity=0.307 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCeEEEeEeCcEEEEEEcCCCccccCCCCCCCCccchhhhhhhhccchhhhhhcCCCcc
Q psy9752 323 CLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDY 402 (722)
Q Consensus 323 ~v~lLne~i~~fd~li~~~~f~~veKIK~iGDtyMAa~Gl~p~~~~~~~~~~~~~~~~~v~ki~TiGd~yma~~gl~~~~ 402 (722)
.+.+...-+..|..+..+. ...+++.+++|-|..+.+..-. +.++|++||||+||+++|++
T Consensus 296 ~vti~fsDiv~fT~l~~~~--~P~~vv~~lNdlyt~Fd~ii~~--------------~d~yKVetiGDaYmvvSglp--- 356 (484)
T KOG1023|consen 296 SVTIYFSDIVGFTVLSSNS--TPIQVVTLLNDLYTTFDRIIDK--------------HDVYKVETIGDAYMVVSGLP--- 356 (484)
T ss_pred ceeeeeHHHHHHHHHHhcC--CCceeeeeccchHHhhhhcccc--------------cCCeeEeccCcceeecccCc---
Confidence 3444555566777777654 3788999999999999888422 23789999999999999985
Q ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEccEEEEeeCCCCcceeeecchhhHhhhhhccCC
Q psy9752 403 RILDEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGL 482 (722)
Q Consensus 403 ~~~~~~~~~~~~~a~~av~~Al~m~~~l~~in~~~~~~l~lrIGIh~G~VvaGvvG~~k~~YdI~GdtVN~ASRmestg~ 482 (722)
.....+++.-+..|--.+........ + ..+|. .
T Consensus 357 ----------~~n~~~H~~eia~msl~~~~~~~~f~----i---------------~H~P~------------------~ 389 (484)
T KOG1023|consen 357 ----------IRNGYRHAREIASMALGLRSFLESFS----L---------------PHRPW------------------E 389 (484)
T ss_pred ----------eecHhHHHHHHHHHHHHHHHHHhccC----C---------------CCCCc------------------h
Confidence 44433333333333222222211100 0 00000 0
Q ss_pred CCeEEECHHHHHHHcCCCeeEEEccceE--ecCCCceEEEEEecCCCCCCcccccccccccCCCccccccccccccHHHH
Q psy9752 483 PNHTQVTEEVYQVLKNYPYEFQCRGKVK--VKGKGDMTTYFLTDRKQPGTMRVEELTSLRGGAGLVSLCRCKVKVTEEVY 560 (722)
Q Consensus 483 ~g~I~Vse~t~~~L~~~~~~~~~rG~v~--VKGkg~~~tY~l~g~~~~~~~~v~~~s~~~s~~G~~~~~r~kIqVSe~t~ 560 (722)
+-+|.+.-. .|++. |-|. +||+||++|++ ++.+++|++ +|. ++||+|++++
T Consensus 390 ~l~iRig~~--------------sg~~~agVvgl-~mPRYclFgDt------vn~AsrMes-~G~-----~~i~~s~~~~ 442 (484)
T KOG1023|consen 390 KLRLRIGFH--------------SGPVVAGVVGL-KMPRYCLFGDT------VNTASRMES-NGK-----LMIHLSEEAK 442 (484)
T ss_pred hhheeeccc--------------cCCceeccccc-CCCcccchhhH------HHHHhhhhh-cCC-----eEEEecHHHH
Confidence 111222111 12221 2232 79999999997 556777777 555 6899999999
Q ss_pred HhhcCC-CccccccceeEecCcceeeEEeeccCCCC
Q psy9752 561 QVLKNY-PYEFQCRGKVKVKGKGDMTTYFLTDRKQP 595 (722)
Q Consensus 561 ~~L~~~-~~~~~~rG~v~vKGKg~m~ty~L~~~~~~ 595 (722)
+.|... +|..+.||.+.+||||.|.||||.|+...
T Consensus 443 ~~l~~~~~~~~e~rG~v~~kgkg~~~t~wl~g~~~~ 478 (484)
T KOG1023|consen 443 NLLTERPQFETEERGLVELKGKGVMSTYWLLGESSK 478 (484)
T ss_pred HHHHhcCceeeeccCcEEeecCceeeeEEeccCccc
Confidence 999644 59999999999999999999999999763
No 13
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=98.87 E-value=7.8e-08 Score=88.75 Aligned_cols=131 Identities=39% Similarity=0.629 Sum_probs=104.1
Q ss_pred EEEEEEeecCCccchhhccCCCChHHHHHHHHHHHHHHHHHHhhcccCCeEEEeEeCcEEEEEEcCCCccccCCCCCCCC
Q psy9752 297 VGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSP 376 (722)
Q Consensus 297 VtVlFaDI~gFt~~~t~l~~~~~~~e~v~lLne~i~~fd~li~~~~f~~veKIK~iGDtyMAa~Gl~p~~~~~~~~~~~~ 376 (722)
+++++.||.+|+ .+.........-++|.++...+.+++..+ +....++-||.+++++...
T Consensus 2 ~~ll~i~i~~~~----~i~~~~g~~~~~~~l~~~~~~l~~~~~~~---~~~~~r~~~d~f~~l~~~~------------- 61 (133)
T cd07556 2 VTILFADIVGFT----SLADALGPDEGDELLNELAGRFDSLIRRS---GDLKIKTIGDEFMVVSGLD------------- 61 (133)
T ss_pred EEEEEEEchhhH----HHHhcCCHHHHHHHHHHHHHHHHHHHHHc---CcEEEEeecceEEEEECch-------------
Confidence 689999999995 44444556677889999999999988763 3457779999999987431
Q ss_pred ccchhhhhhhhccchhhhhhcCCCcccccCCCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEccEEEEe
Q psy9752 377 DRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGV 456 (722)
Q Consensus 377 ~~~~~v~ki~TiGd~yma~~gl~~~~~~~~~~~~~~~~~a~~av~~Al~m~~~l~~in~~~~~~l~lrIGIh~G~VvaGv 456 (722)
....+.+++..+.+.+...+......+.++||++.|++..+.
T Consensus 62 --------------------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ig~~~g~~~~~~ 103 (133)
T cd07556 62 --------------------------------------HPAAAVAFAEDMREAVSALNQSEGNPVRVRIGIHTGPVVVGV 103 (133)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHhccCCceEEEEEEecccEEEEe
Confidence 123456667777777766554456678999999999999999
Q ss_pred eCCCCcceeeecchhhHhhhhhccCCCCeE
Q psy9752 457 IGARKPQYDIWGNTVNVASRMDSTGLPNHT 486 (722)
Q Consensus 457 vG~~k~~YdI~GdtVN~ASRmestg~~g~I 486 (722)
.|. ++.++.+|+.+|.|+++...+++++|
T Consensus 104 ~~~-~~~~~~~~~~~~~a~~a~~~a~~~~i 132 (133)
T cd07556 104 IGS-RPQYDVWGALVNLASRMESQAKAGQV 132 (133)
T ss_pred ccC-CccceEEcHHHHHHHHHHhcCCCCCc
Confidence 998 88999999999999999998888765
No 14
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=97.56 E-value=6.6e-06 Score=81.40 Aligned_cols=66 Identities=29% Similarity=0.438 Sum_probs=52.1
Q ss_pred CceEEEEEecCCCCCCcccccccccccCCCccccccccccccHHHHHhhc-CCCccccccceeEecCcceeeEEeecc
Q psy9752 515 GDMTTYFLTDRKQPGTMRVEELTSLRGGAGLVSLCRCKVKVTEEVYQVLK-NYPYEFQCRGKVKVKGKGDMTTYFLTD 591 (722)
Q Consensus 515 g~~~tY~l~g~~~~~~~~v~~~s~~~s~~G~~~~~r~kIqVSe~t~~~L~-~~~~~~~~rG~v~vKGKg~m~ty~L~~ 591 (722)
...+.|-+.|+. ++.++++.+ .+.+ +.|.+|+++|+.|. ...|.++++|.+.+|||+++.||+|.|
T Consensus 118 ~~~~~~~v~G~~------vn~Aarl~~-~a~~----~~i~vs~~v~~~l~~~~~~~~~~~g~~~lkG~~~~~~y~~~~ 184 (184)
T PF00211_consen 118 SRRPEYDVFGDA------VNIAARLES-LAPP----GQILVSEEVYDALNESDQFRFEELGRVELKGKGPVQTYQLNG 184 (184)
T ss_dssp SSSEEEEEESHH------HHHHHHHHH-TSST----TSEEEEHHHHHHHTTHTTEEEEEEEEEEETTSSEEEEEEEE-
T ss_pred Ccccceeeeehh------hhhhHHHHH-hhcc----cccccCHHHHHHhcccCceEEEEeeeEEEecCCCcEEEEEEC
Confidence 356678888875 555666655 2333 78999999999999 336999999999999999999999976
No 15
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.
Probab=93.02 E-value=0.4 Score=49.51 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=35.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHH
Q psy9752 234 VEWTGRLDFLWQVQACEEKKEMDALQHSNKRILFNLLPSHVAMHF 278 (722)
Q Consensus 234 ~E~~~R~~fl~~~q~~~e~~~~~~~~~~~~~LL~niLP~~Va~~l 278 (722)
.+...++....+.++++..+++++++++.+.||++|||+.||+.+
T Consensus 175 ~~l~~~le~~~~~~Le~~~~~l~~ek~ktd~LL~~mlP~~VA~~L 219 (219)
T PF07701_consen 175 LKLAKQLEQEKSAELEESMRELEEEKKKTDELLYSMLPPSVADRL 219 (219)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhhC
Confidence 445555554556677778899999999999999999999999875
No 16
>PF06327 DUF1053: Domain of Unknown Function (DUF1053); InterPro: IPR009398 Cyclic AMP (cAMP) is a ubiquitous signalling molecule which mediates many cellular processes by activating cAMP-dependent kinases and also inducing protein-protein interactions. This molecule is produced by the adenylate cyclase (AC) enzyme, using ATP as its substrate. Mammalian adenylate cyclase has nine closely related membrane-bound isoforms (AC1-9) showing significant sequence homology and sharing the same overall structure: two hydrophobic transmembrane domains, and two cytoplasmic domains that are responsible for the catalytic activity. These isoforms differ in both their tissue specificity and their regulation. Regulatory factors known to influence one or more of these isoforms include G proteins, protein kinases, calcium and calmodulin. For more information see [, ]. This entry represents a region of unknown function found in many of these isoforms. It is part of the N-terminal cytoplasmic domain but its presence is not necessary for catalytic activity []. ; GO: 0004016 adenylate cyclase activity, 0009190 cyclic nucleotide biosynthetic process, 0016021 integral to membrane
Probab=92.38 E-value=0.042 Score=49.52 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.1
Q ss_pred hhhhhhcccccccccccccccccc
Q psy9752 41 VVQLLHSIKYSMEVPFSNMAAVQE 64 (722)
Q Consensus 41 ~~~l~~~~~~~~~~pF~~~~~~~~ 64 (722)
++||++ |||++||+|+.+++.
T Consensus 1 t~~l~~---W~ae~PF~nl~~~~s 21 (101)
T PF06327_consen 1 TRYLES---WGAEKPFANLNHRES 21 (101)
T ss_pred CCCCCC---cCCcCCHhHhccCcc
Confidence 578999 999999999999984
No 17
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=88.36 E-value=46 Score=36.96 Aligned_cols=58 Identities=5% Similarity=-0.006 Sum_probs=34.5
Q ss_pred eeEEEEEEeecCCccchhhccCCCChHHHHHHHHHHHHHHHHHHhhcccCCeEEEeEeCcEEEEEE
Q psy9752 295 SKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAV 360 (722)
Q Consensus 295 ~~VtVlFaDI~gFt~~~t~l~~~~~~~e~v~lLne~i~~fd~li~~~~f~~veKIK~iGDtyMAa~ 360 (722)
++.++++.||.+|+++...... ...-++|.++-..+.+.+.+. ...-++-||.+.+..
T Consensus 235 ~~~~ll~idId~Fk~INd~~Gh----~~GD~lL~~vA~~L~~~l~~~----d~laRlggdeFavll 292 (366)
T PRK10245 235 RDATLLIIDIDHFKSINDTWGH----DVGDEAIVALTRQLQITLRGS----DVIGRFGGDEFAVIM 292 (366)
T ss_pred CCEEEEEEECCcchHHHHhhCc----hHHHHHHHHHHHHHHHhCCCC----CEEEEEcCcEEEEEe
Confidence 5688999999999665444432 233344555444444554332 122347788888875
No 18
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=78.72 E-value=1.4 Score=42.21 Aligned_cols=62 Identities=26% Similarity=0.415 Sum_probs=46.1
Q ss_pred eEEEEEecCCCCCCcccccccccccCCCccccccccccccHHHHHhhcCCCccccccceeEecCc-ceeeEEee
Q psy9752 517 MTTYFLTDRKQPGTMRVEELTSLRGGAGLVSLCRCKVKVTEEVYQVLKNYPYEFQCRGKVKVKGK-GDMTTYFL 589 (722)
Q Consensus 517 ~~tY~l~g~~~~~~~~v~~~s~~~s~~G~~~~~r~kIqVSe~t~~~L~~~~~~~~~rG~v~vKGK-g~m~ty~L 589 (722)
...|.+.|+..+ .+.++.+ .+. .++|.+|+++++.+....|.+.+.|.+.+||+ +++.+|++
T Consensus 115 ~~~~~~~G~~v~------~A~rl~~-~a~----~~~i~vs~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~y~~ 177 (177)
T cd07302 115 RPEYTVIGDTVN------LAARLES-LAK----PGQILVSEATYELLGDAGFEFEELGEVELKGKSGPVRVYRL 177 (177)
T ss_pred CcceeEecchHh------HHHHHHh-cCC----CCEEEECHHHHHhhccCceEEEEeCCEEecCCCCceEEEEC
Confidence 444666776544 4445444 222 37899999999999875699999999999998 78888864
No 19
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.91 E-value=17 Score=44.04 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHccCCHH
Q psy9752 251 EKKEMDALQHSNKRILFNLLPSH 273 (722)
Q Consensus 251 e~~~~~~~~~~~~~LL~niLP~~ 273 (722)
++.++..++...-+||..-||+.
T Consensus 182 ~q~~v~~~n~~~~~~l~~~lp~~ 204 (697)
T PF09726_consen 182 KQREVQKENEFYMQLLQQALPPE 204 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Confidence 34556666777778899999987
No 20
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=73.86 E-value=26 Score=36.85 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=41.5
Q ss_pred eeeEEEEEEeecCCccchhhccCCCChHHHHHHHHHHHHHHHHHHhhcccCCeEEEeEeCcEEEEEEc
Q psy9752 294 YSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAVG 361 (722)
Q Consensus 294 ~~~VtVlFaDI~gFt~~~t~l~~~~~~~e~v~lLne~i~~fd~li~~~~f~~veKIK~iGDtyMAa~G 361 (722)
-..|.|+--||.|+|. .......+.+.....++++..+.+.+.++ +++-- =.=||-+|++|.
T Consensus 125 d~~v~iAH~DI~d~T~---~~Td~~~~ydt~~~I~~l~~~l~~~~~~~--G~L~f-ylGGDNi~~v~p 186 (246)
T PF05165_consen 125 DGYVQIAHFDINDSTG---TYTDEESPYDTYLEIEDLYAKLMKYLEKY--GSLAF-YLGGDNIMAVCP 186 (246)
T ss_dssp S--EEEEEEEETTHHH---HTTTTS-HHHHHHHHHHHHHHHHHHHHTT--T---E-EEETTEEEEE-T
T ss_pred CCceEEEEEeeeccch---hhhcccChHHHHHHHHHHHHHHHHHHHhc--CCEEE-EecCceEEEECC
Confidence 3679999999999952 45555678888888888888888888665 34332 234799999884
No 21
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=67.82 E-value=2 Score=42.72 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=26.0
Q ss_pred EEEEecCCCCCCcccccccccccCCCccccccccccccHHHHHhhcCCCcc
Q psy9752 519 TYFLTDRKQPGTMRVEELTSLRGGAGLVSLCRCKVKVTEEVYQVLKNYPYE 569 (722)
Q Consensus 519 tY~l~g~~~~~~~~v~~~s~~~s~~G~~~~~r~kIqVSe~t~~~L~~~~~~ 569 (722)
.|-+.|+.. +.++++.+ ...+ ++|.+|+++++.|+...+.
T Consensus 152 ~~~~~G~~v------n~AarL~~-~a~~----g~i~vs~~~~~~l~~~~~~ 191 (194)
T smart00044 152 RYCLFGDTV------NLASRMES-VGDP----GQILVSEETYSLLRRRGPR 191 (194)
T ss_pred eeEEeChHH------HHHHHHHh-cCCC----CeEEECHHHHHHHHhhCCC
Confidence 566777754 44555544 2223 7899999999999654433
No 22
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=63.04 E-value=5.1 Score=41.37 Aligned_cols=74 Identities=24% Similarity=0.388 Sum_probs=51.7
Q ss_pred cceEecCCCceEEEEEecCCCCCCcccccccccccCCCccccccccccccHHHHHhhcCCCccccccceeEecCc-ceee
Q psy9752 507 GKVKVKGKGDMTTYFLTDRKQPGTMRVEELTSLRGGAGLVSLCRCKVKVTEEVYQVLKNYPYEFQCRGKVKVKGK-GDMT 585 (722)
Q Consensus 507 G~v~VKGkg~~~tY~l~g~~~~~~~~v~~~s~~~s~~G~~~~~r~kIqVSe~t~~~L~~~~~~~~~rG~v~vKGK-g~m~ 585 (722)
|++.+-.-|. |.+.|+..|.+.++++.+. .+.|.+|+++++++.+....++..|...+||+ .+..
T Consensus 144 G~vv~~~~g~---~~~~G~~VN~AaRLe~~a~-----------~g~i~iS~~~~~~~~~~~~~~~~~g~~~lkg~~~~~~ 209 (227)
T COG2114 144 GEVVVGNTGG---YTVVGSAVNQAARLESLAK-----------PGQVLLSEATYDLVRDLVDLFSGLGSHRLKGLARPVR 209 (227)
T ss_pred ecEEEEeecC---eeEechHhHHHHHHHHhcC-----------CCeEEEcHHHHHHHhhhhhhhhcCCceecCCCCCceE
Confidence 4444433333 7788887665555544443 26799999999999842477778899999998 6777
Q ss_pred EEeeccCCC
Q psy9752 586 TYFLTDRKQ 594 (722)
Q Consensus 586 ty~L~~~~~ 594 (722)
.|.+.+...
T Consensus 210 v~~~~~~~~ 218 (227)
T COG2114 210 VYQLCHRSL 218 (227)
T ss_pred EEEeccccc
Confidence 888776643
No 23
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=61.46 E-value=65 Score=33.44 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=47.1
Q ss_pred eeEEEEEEeecCCccchhhccCCCChHHHHHHHHHHHHHHHHHHhhcccCCeEEEeEe-CcEEEEEEcC
Q psy9752 295 SKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTV-GSTYMAAVGL 362 (722)
Q Consensus 295 ~~VtVlFaDI~gFt~~~t~l~~~~~~~e~v~lLne~i~~fd~li~~~~f~~veKIK~i-GDtyMAa~Gl 362 (722)
..|+|.--||.+-|. +.....+|.+....++..+..+.+-+.++ +.+-- |+ ||-|||+|..
T Consensus 130 g~v~IAH~Dvn~~Tg---t~Td~~~~~~t~~~I~~~~~~L~~~l~k~--gal~f--flGGDN~ma~~p~ 191 (250)
T COG2429 130 GYVQIAHFDVNDATG---TYTDIVSPYDTYTEIQRVYATLMRFLEKI--GALLF--FLGGDNIMAVCPG 191 (250)
T ss_pred CceEEEEEeeecchh---hhhcccchhHHHHHHHHHHHHHHHHHHhc--CcEEE--EecCcceEEECCC
Confidence 568999999999852 44455678899999999999999999876 34433 55 6999998854
No 24
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=58.12 E-value=2.1e+02 Score=33.32 Aligned_cols=58 Identities=9% Similarity=0.084 Sum_probs=34.6
Q ss_pred eeEEEEEEeecCCccchhhccCCCChHHHHHHHHHHHHHHHHHHhhcccCCeEEEeEeCcEEEEEE
Q psy9752 295 SKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAV 360 (722)
Q Consensus 295 ~~VtVlFaDI~gFt~~~t~l~~~~~~~e~v~lLne~i~~fd~li~~~~f~~veKIK~iGDtyMAa~ 360 (722)
...++++.||.+|..+..... .+..=++|.++-..+...+..+ ...-.+=||.++.+.
T Consensus 428 ~~~~l~~idid~fk~iNd~~G----~~~GD~~L~~~a~~l~~~~~~~----~~~~R~ggdeF~ill 485 (570)
T PRK15426 428 QPFSVIQLDLDHFKSINDRFG----HQAGDRVLSHAAGLISSSLRAQ----DVAGRVGGEEFCVVL 485 (570)
T ss_pred CcEEEEEEECcccCHhhHhhC----hHHHHHHHHHHHHHHHHhCCCC----CEEEeecCcEEEEEe
Confidence 457999999999965544433 2233445555555555555432 122346788887764
No 25
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=50.72 E-value=1.1e+02 Score=32.30 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=39.4
Q ss_pred eeeEEEEEEeecCCccchhhccCCCChHHHHHHHHHHHHHHHHHHhh-cccCCeEEEeEe-CcEEEEEEc
Q psy9752 294 YSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGE-DRFRAIDKIKTV-GSTYMAAVG 361 (722)
Q Consensus 294 ~~~VtVlFaDI~gFt~~~t~l~~~~~~~e~v~lLne~i~~fd~li~~-~~f~~veKIK~i-GDtyMAa~G 361 (722)
-..|+|+--||.++|..++.. ..|.+..--.++.+..+-+.+.+ + +++-- |+ ||-+|++|.
T Consensus 132 ~~~v~iaH~Di~~~T~~~td~---~~~~dt~~~i~~~~~~l~~~~~~~~--g~l~f--f~GGDN~~~~~~ 194 (254)
T PRK02240 132 DGYVQIAHFDINDITGTYTDI---ENAFDTFLEIEQAYLALMRELRKAH--DALSF--FVGGDNFMAPCP 194 (254)
T ss_pred CCceEEEEEeeecccceeecc---CchhHHHHHHHHHHHHHHHHHHHhc--CcEEE--EecCceEEEECC
Confidence 467999999999998655432 24555555555655555555555 4 23322 44 799999883
No 26
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=46.87 E-value=5.8e+02 Score=30.50 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=58.2
Q ss_pred EEEEeecCCccchhhccCCCChHHHHHHHHHHHHHHHHHHhhcccCCeEEEeEeCcEEEEEEcCCCccccCCCCCCCCcc
Q psy9752 299 VVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPDR 378 (722)
Q Consensus 299 VlFaDI~gFt~~~t~l~~~~~~~e~v~lLne~i~~fd~li~~~~f~~veKIK~iGDtyMAa~Gl~p~~~~~~~~~~~~~~ 378 (722)
+.+..+-||.++...+++ +-...+|.+.+.|-+-..++ +++.-=++-+|-|++++.-.
T Consensus 177 l~~i~vDNyDe~t~~~~d-----~~rs~inS~V~s~l~~~a~~--~~if~rr~s~drf~~~~~~~--------------- 234 (655)
T COG3887 177 LGIISVDNYDEVTQGLSD-----SDRSQINSFVTSFLEEWATE--YNIFLRRYSSDRFYAFTNYK--------------- 234 (655)
T ss_pred EEEEEeccHHHHhcCCCh-----hhHHHHHHHHHHHHHHHHHH--hhhhheeecCCeEEEEecHH---------------
Confidence 444556688766555554 35566788777766555443 14444468899999986431
Q ss_pred chhhhhhhhccchhhhhhcCCCcccccCCCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEc
Q psy9752 379 FRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIG 450 (722)
Q Consensus 379 ~~~v~ki~TiGd~yma~~gl~~~~~~~~~~~~~~~~~a~~av~~Al~m~~~l~~in~~~~~~l~lrIGIh~G 450 (722)
....+.+-=+.+.+.+++...+...++.+.||+..|
T Consensus 235 ------------------------------------~L~~l~~~kF~iLd~~RE~s~~~~ipLTLSiGvg~g 270 (655)
T COG3887 235 ------------------------------------ILEKLEEDKFSILDEFREESSQKNIPLTLSIGVGYG 270 (655)
T ss_pred ------------------------------------HHHHHHHhhhHHHHHHHHHhhccCcceEEEEEeccC
Confidence 122333333455556666555566788889998887
No 27
>PLN03223 Polycystin cation channel protein; Provisional
Probab=45.33 E-value=8.6e+02 Score=32.08 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHH-----HccCCHHHHHHHhh
Q psy9752 251 EKKEMDALQHSNKRIL-----FNLLPSHVAMHFLD 280 (722)
Q Consensus 251 e~~~~~~~~~~~~~LL-----~niLP~~Va~~ll~ 280 (722)
+.+-.+-++.+-+.+| .+.+|+.-+.+.+.
T Consensus 1436 e~EIvDfm~~rfrslL~g~~~~~~i~~~~~~~~lr 1470 (1634)
T PLN03223 1436 HTELFPMLRDKWRSMFKGWFYKNHIPEARVRRQLR 1470 (1634)
T ss_pred hhHHHHHHHHHHHHHHhhhcccccCCcHHHHHHHH
Confidence 3444556666677777 36777776666664
No 28
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=31.39 E-value=3.9e+02 Score=28.35 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=40.9
Q ss_pred EEEEeecCCccchhhccCCCChHHHHHHHHHHHHHHHHHHhhcccCCeEEEeEeCcEEEEEEc
Q psy9752 299 VVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAVG 361 (722)
Q Consensus 299 VlFaDI~gFt~~~t~l~~~~~~~e~v~lLne~i~~fd~li~~~~f~~veKIK~iGDtyMAa~G 361 (722)
|.-..|.||-+|..++....+. ++-.+=.+++..+-+.+.++ +....-+=||-+||++.
T Consensus 4 it~iqid~YgpWT~t~~prRE~-dlQ~lQsrLya~L~~~~~~~---ggl~Ff~RgDN~iavtN 62 (254)
T PRK02240 4 ITLIQIDNYGPWTVTPNPRRES-DLQALQSRLYADLAQQFGAR---DGYVFFTRFDNMIAVTN 62 (254)
T ss_pred EEEEEecCCCcCcCCCCCccHH-HHHHHHHHHHHHHHHHHHhC---CCEEEeccCceEEEEcC
Confidence 5567889998887777655442 44555567788888888765 45555566899999863
No 29
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=25.43 E-value=5.3e+02 Score=23.63 Aligned_cols=10 Identities=30% Similarity=0.248 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q psy9752 176 KIGLLSFMSV 185 (722)
Q Consensus 176 k~~l~~~~~~ 185 (722)
+-.+.+++..
T Consensus 31 ~~~l~Wl~~~ 40 (115)
T PF10066_consen 31 KYSLLWLVFS 40 (115)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 30
>COG2199 c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms]
Probab=25.42 E-value=6e+02 Score=24.29 Aligned_cols=58 Identities=9% Similarity=0.163 Sum_probs=34.1
Q ss_pred eeEEEEEEeecCCccchhhccCCCChHHHHHHHHHHHHHHHHHHhhcccCCeEEEeEeCcEEEEEE
Q psy9752 295 SKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAV 360 (722)
Q Consensus 295 ~~VtVlFaDI~gFt~~~t~l~~~~~~~e~v~lLne~i~~fd~li~~~~f~~veKIK~iGDtyMAa~ 360 (722)
...++++.||-+|..+-.... -...-.+|-++-..+...+... . ..-++=||.+..+.
T Consensus 50 ~~~~l~~iDiD~Fk~iND~~G----h~~GD~vL~~va~~L~~~~~~~---~-~~~R~gGdEF~i~l 107 (181)
T COG2199 50 EPLALLLLDLDHFKQINDTYG----HAAGDEVLREVARRLRSNLREG---D-LVARLGGDEFAVLL 107 (181)
T ss_pred CCeEEEEEeCcCCcccccccc----chHHHHHHHHHHHHHHHhcCCC---C-EEEEeccceeEEEe
Confidence 568999999999965432222 2233445555555555555432 1 23346688887764
No 31
>KOG2296|consensus
Probab=23.16 E-value=1.4e+03 Score=27.56 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=8.1
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q psy9752 239 RLDFLWQVQACEEKKEMDA 257 (722)
Q Consensus 239 R~~fl~~~q~~~e~~~~~~ 257 (722)
|..|+...++.+++.++++
T Consensus 209 kk~y~~~akia~~~a~aee 227 (673)
T KOG2296|consen 209 KKLYFKIAKIAVEKAEAEE 227 (673)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444433444444444443
No 32
>KOG4700|consensus
Probab=22.07 E-value=2.1e+02 Score=28.75 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=40.7
Q ss_pred eeeEEEEEEeecCCccchhhccCCCChHHHHHHHHHHHHHHHHHHhh-cccCCeEEEeEeCcEEE
Q psy9752 294 YSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGE-DRFRAIDKIKTVGSTYM 357 (722)
Q Consensus 294 ~~~VtVlFaDI~gFt~~~t~l~~~~~~~e~v~lLne~i~~fd~li~~-~~f~~veKIK~iGDtyM 357 (722)
+-.||==|+-+.-| |....+++ -.|+..+|++--..+...+.+ +..+.|-+|||+||--.
T Consensus 65 ~V~vt~dFS~~~vY--Wm~~~~ge--N~e~e~~L~rs~~~~rh~l~~~~~~g~vP~IkFV~DK~~ 125 (207)
T KOG4700|consen 65 RVRVTRDFSQVSVY--WMCRGDGE--NSEIEDFLERSKHQIRHRLEESIGIGTVPEIKFVGDKAL 125 (207)
T ss_pred EEEeccchhhheeE--EEecCCcc--HHHHHHHHHHHHHHHHHHHHHHhccccCCceEEecchHH
Confidence 34455556655555 33444443 458899999999888887765 44467889999999643
No 33
>KOG2822|consensus
Probab=20.36 E-value=7.9e+02 Score=27.68 Aligned_cols=31 Identities=29% Similarity=0.173 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9752 152 QYIILSCCLGYLAVALFLRLKIVIKIGLLSF 182 (722)
Q Consensus 152 ~~~~~~~~l~~~~~~~f~~~~~~~k~~l~~~ 182 (722)
.|+.+++++...+...|.|+..-+--++-++
T Consensus 189 ~~lgl~lv~~y~~lv~lgRiY~GMHgvlDi~ 219 (407)
T KOG2822|consen 189 QYLGLSLVLLYYALVCLGRIYCGMHGVLDIV 219 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 4666677777777777777776664444333
Done!