RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9752
(722 letters)
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
domain.
Length = 184
Score = 193 bits (493), Expect = 1e-57
Identities = 88/236 (37%), Positives = 121/236 (51%), Gaps = 54/236 (22%)
Query: 289 LYHQSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDK 348
+Y QSY V ++FA I + E +RLLN++ FDELL +
Sbjct: 1 VYAQSYDNVTILFADIVGFTALSSRHSP----EELVRLLNDLYTRFDELLDKHG------ 50
Query: 349 IKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDYRILDED 408
+ K+KT+G YMAA GL P+
Sbjct: 51 ---------------------------------VYKVKTIGDAYMAASGL-PEPSP---- 72
Query: 409 ETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYDIWG 468
A+ TL E M + + +N +S+ +RVGI+ GPVVAGVIGAR+P+YD+WG
Sbjct: 73 -----AHAQTLAEMALDMLEAIKSVNIHSFEGLRVRVGIHTGPVVAGVIGARRPRYDVWG 127
Query: 469 NTVNVASRMDSTGLPNHTQVTEEVYQVLKNYP-YEFQCRGKVKVKGKGDMTTYFLT 523
+TVN+ASRM+STG+P V+EE Y++LK +EF RG+V+VKGKG M TYFL
Sbjct: 128 DTVNLASRMESTGVPGKIHVSEETYRLLKTREQFEFTERGEVEVKGKGKMETYFLN 183
Score = 50.7 bits (122), Expect = 3e-07
Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 552 KVKVTEEVYQVLKNYP-YEFQCRGKVKVKGKGDMTTYFLT 590
K+ V+EE Y++LK +EF RG+V+VKGKG M TYFL
Sbjct: 144 KIHVSEETYRLLKTREQFEFTERGEVEVKGKGKMETYFLN 183
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic and
prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions to
bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 138 bits (350), Expect = 8e-38
Identities = 64/229 (27%), Positives = 98/229 (42%), Gaps = 56/229 (24%)
Query: 297 VGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTY 356
V V+FA I + L E + LLNE + FDE++ +R KT+G
Sbjct: 2 VTVLFADIVGFTALSERLGP----EELVELLNEYFSAFDEII--ERHGGT-VDKTIGDAV 54
Query: 357 MAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPGAYL 416
MA GL E +R
Sbjct: 55 MAVFGLP------GAHEDHAER-------------------------------------- 70
Query: 417 STLVEFVFAMRDKLIVINE--NSYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTVNVA 474
V M++ L +N LR+GI+ GPVVAGV+G+ +P+Y + G+TVN+A
Sbjct: 71 --AVRAALEMQEALAELNAEREGGPPLRLRIGIHTGPVVAGVVGSERPEYTVIGDTVNLA 128
Query: 475 SRMDSTGLPNHTQVTEEVYQVLKNYPYEFQCRGKVKVKGK-GDMTTYFL 522
+R++S P V+E Y++L + +EF+ G+V++KGK G + Y L
Sbjct: 129 ARLESLAKPGQILVSEATYELLGDAGFEFEELGEVELKGKSGPVRVYRL 177
Score = 40.6 bits (96), Expect = 7e-04
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 555 VTEEVYQVLKNYPYEFQCRGKVKVKGK-GDMTTYFL 589
V+E Y++L + +EF+ G+V++KGK G + Y L
Sbjct: 142 VSEATYELLGDAGFEFEELGEVELKGKSGPVRVYRL 177
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 138 bits (349), Expect = 2e-37
Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 64/257 (24%)
Query: 250 EEKKEMDALQHSNKRILFNLLPSHVAMHFLDNQFRSNMDLYHQSYSKVGVVFASITNYHE 309
EEKK+ D R+L LLP+ VA R + +SY V ++F+ I +
Sbjct: 1 EEKKKTD-------RLLDQLLPASVAEQLK----RGGSPVPAESYDNVTILFSDIVGFTS 49
Query: 310 FYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAVGLMPDYRIL 369
+ + + LLN++ + FD+++ K+KT+G YM A GL
Sbjct: 50 LCST----STPEQVVNLLNDLYSRFDQII---DRHGGYKVKTIGDAYMVASGL------- 95
Query: 370 DEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPGAYLSTLVEFVFAMRDK 429
+E D I + M ++
Sbjct: 96 -PEEALVDHAELI-------------------------------------ADEALDMVEE 117
Query: 430 L-IVINENSYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLPNHTQV 488
L V+ ++ +R+GI+ GPVVAGV+G R P+Y ++G+TVN+ASRM+S G P QV
Sbjct: 118 LKTVLVQHREEGLRVRIGIHTGPVVAGVVGIRMPRYCLFGDTVNLASRMESAGDPGQIQV 177
Query: 489 TEEVYQVLKNYPYEFQC 505
+EE Y +L +F
Sbjct: 178 SEETYSLLARRGGQFVF 194
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be divided
into two major groups; the mononucleotidyl cyclases
(MNC's) and the diguanylate cyclases (DGC's). The
MNC's, which include the adenylate cyclases (AC's) and
the guanylate cyclases (GC's), have a conserved cyclase
homology domain (CHD), while the DGC's have a conserved
GGDEF domain, named after a conserved motif within this
subgroup. Their products, cyclic guanylyl and adenylyl
nucleotides, are second messengers that play important
roles in eukaryotic signal transduction and prokaryotic
sensory pathways.
Length = 133
Score = 92.8 bits (231), Expect = 2e-22
Identities = 56/188 (29%), Positives = 75/188 (39%), Gaps = 59/188 (31%)
Query: 297 VGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTY 356
V ++FA I + L E LLNE+ FD L+
Sbjct: 2 VTILFADI----VGFTSLADALGPDEGDELLNELAGRFDSLIRR---------------- 41
Query: 357 MAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPGAYL 416
S D KIKT+G +M GL P A
Sbjct: 42 ------------------SGDL-----KIKTIGDEFMVVSGLD-----------HPAA-- 65
Query: 417 STLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTVNVASR 476
V F MR+ + +N++ N +R+GI+ GPVV GVIG+R PQYD+WG VN+ASR
Sbjct: 66 --AVAFAEDMREAVSALNQSEGNPVRVRIGIHTGPVVVGVIGSR-PQYDVWGALVNLASR 122
Query: 477 MDSTGLPN 484
M+S
Sbjct: 123 MESQAKAG 130
>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms].
Length = 227
Score = 64.1 bits (156), Expect = 2e-11
Identities = 38/182 (20%), Positives = 74/182 (40%), Gaps = 37/182 (20%)
Query: 352 VGSTYMAAVGLMPDY---RILDEDETSPDRFRAIDKI---------KTVGSTYMAAVGLM 399
VGST ++ + D +L+ F A+ ++ K +G ++A G
Sbjct: 55 VGSTELS--ESLGDEALVELLNL------YFDAVAEVVARHGGRVVKFIGDGFLAVFG-- 104
Query: 400 PDYRILDEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGA 459
+ ++ ++ A+R+ L + S +R+GI+ G VV G G
Sbjct: 105 --------RPSPLEDAVACALDLQLALRNPLARLRRESLR---VRIGIHTGEVVVGNTGG 153
Query: 460 RKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYPYEFQCRGKVKVKGKGDMTT 519
Y + G+ VN A+R++S P ++E Y ++++ F G ++KG
Sbjct: 154 ----YTVVGSAVNQAARLESLAKPGQVLLSEATYDLVRDLVDLFSGLGSHRLKGLARPVR 209
Query: 520 YF 521
+
Sbjct: 210 VY 211
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 35.0 bits (81), Expect = 0.16
Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 24/124 (19%)
Query: 150 LPQYIILSCCLGYLAVALFLRLKIVIKIGLLSFMSVVYIL-LIELSH------RTLFTCY 202
P +I++ GYL ALFL L++V+ + +L V+YIL + +S R L
Sbjct: 433 APLALIVAALTGYLYTALFLALRLVVTVAILFTWYVLYILRGLSVSARRLAFARALAGRA 492
Query: 203 DNKVQSVIPLHI----------TSVVYVLMFLVAVIIHGRQVEWTGRLDF--LWQVQACE 250
+ ++ + + ++ +L+ + V+ W L+ LW
Sbjct: 493 LAEEAELVEVALDQIGLQLLRLIRLLLLLIAIPLVL-----YVWGSYLEDITLWAYLGTT 547
Query: 251 EKKE 254
Sbjct: 548 GGVL 551
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one C
subunit in the genome and that genome is lacking the F
subunit partner (also a thioredcxin reductase homolog)
that is usually found (TIGR03140).
Length = 555
Score = 34.8 bits (80), Expect = 0.20
Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 17/124 (13%)
Query: 250 EEKKEMDALQHSNKRILFNLLPSHVAMHFLDNQFRSNMDLYHQSYSKVGVVFASITNYHE 309
EE KE + LD+ R ++ +F + N
Sbjct: 324 EEAKEASEASAAETTPAATTKKGS----LLDDSLRQ----------QLVGIFGRLENPVT 369
Query: 310 FYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAVGLMPDYRIL 369
+ LDG+N+ L+ + +F L + A+++ + S + + +P +L
Sbjct: 370 LLLFLDGSNEKSAELQ---SFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALL 426
Query: 370 DEDE 373
D+D
Sbjct: 427 DDDG 430
>gnl|CDD|233794 TIGR02239, recomb_RAD51, DNA repair protein RAD51. This eukaryotic
sequence family consists of RAD51, a protein involved in
DNA homologous recombination and repair. It is similar
in sequence the exclusively meiotic recombinase DMC1
(TIGR02238), to archaeal families RadA (TIGR02236) and
RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Length = 316
Score = 32.0 bits (73), Expect = 0.94
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 596 GTMRVEELTSLRGGAGLGALSDVNSVNYDLCYGNPDHRNDDDNTSLSSRASSRVFDSD-A 654
GT R E L ++ GL +++V Y Y N DH+ L +A++ + +S A
Sbjct: 140 GTFRPERLLAIAERYGLNPEDVLDNVAYARAY-NTDHQ-----LQLLQQAAAMMSESRFA 193
Query: 655 LVSVDSLSVLYDSEY 669
L+ VDS + LY +++
Sbjct: 194 LLIVDSATALYRTDF 208
>gnl|CDD|178728 PLN03186, PLN03186, DNA repair protein RAD51 homolog; Provisional.
Length = 342
Score = 32.0 bits (73), Expect = 1.0
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 596 GTMRVEELTSLRGGAGLGALSDVNSVNYDLCYGNPDHRNDDDNTSLSSRASSRVFDSDAL 655
GT R + L + GL + +V Y Y N DH+++ L AS AL
Sbjct: 167 GTFRPQRLIQIAERFGLNGADVLENVAYARAY-NTDHQSE----LLLEAASMMAETRFAL 221
Query: 656 VSVDSLSVLYDSEYE 670
+ VDS + LY +E+
Sbjct: 222 MIVDSATALYRTEFS 236
>gnl|CDD|234205 TIGR03426, shape_MreD, rod shape-determining protein MreD. Members
of this protein family are the MreD protein of bacterial
cell shape determination. Most rod-shaped bacteria
depend on MreB and RodA to achieve either a rod shape or
some other non-spherical morphology such as coil or
stalk formation. MreD is encoded in an operon with MreB,
and often with RodA and PBP-2 as well. It is highly
hydrophobic (therefore somewhat low-complexity) and
highly divergent, and therefore sometimes tricky to
discover by homology, but this model finds most examples
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 154
Score = 30.3 bits (69), Expect = 2.1
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 149 PLPQYIILSCCLGYLAVALFLRL------KIVIKIGLLSFMSVVYILLIE-LSHRTLFTC 201
PL + + + YLA +LF R + + I LL + + + LI L F+
Sbjct: 68 PLGVHALALTLVAYLAASLFQRFRQFDLWQQALIIFLLLILGELLVFLILTLLGNAFFSL 127
Query: 202 YDNKVQSVIPLHITSVVYVLMFLV 225
+ ++P + ++++ +F +
Sbjct: 128 EYFWLFRLLPTLLLNLLWPWVFFL 151
>gnl|CDD|205930 pfam13756, Stimulus_sens_1, Stimulus-sensing domain. This domain
is found in the periplasmic region of the sensor
component of the two-component regulatory system. The
periplasmic region is likely to be involved in stimulus
sensing.
Length = 112
Score = 29.6 bits (67), Expect = 2.1
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 642 SSRASSRVFDSDALVSVDSLSVLYDSEYEDPLRYAPIHLPPVGQDEHS 689
S+RA R+FD+D + +DS LY RY LPP
Sbjct: 18 STRA--RLFDADGTLLLDSR-TLYSR--GRVARYD---LPPPEPTPIP 57
>gnl|CDD|226840 COG4409, NanH, Neuraminidase (sialidase) [Carbohydrate transport
and metabolism].
Length = 728
Score = 31.4 bits (71), Expect = 2.4
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 259 QHSNKRILFNLLPSHVAMHFLDNQ-----FRSNMDLYHQSYSKVGVVFASITNYHEF 310
Q S I + + AM L R++ SK G S+ Y +
Sbjct: 558 QVSVTPIPSSTQSAEAAMVELSKGKIQAFGRTDQGKIAYRTSKDGGETWSVDKYFSY 614
>gnl|CDD|224878 COG1967, COG1967, Predicted membrane protein [Function unknown].
Length = 271
Score = 30.8 bits (70), Expect = 2.4
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 154 IILSCCLGYLAVALFLRLKIVIKIGLLSFMSVV-YILLIELSHRTLFTCYDNKVQSVIPL 212
IIL + L L RLKI KI ++++ ++LL ++ D + L
Sbjct: 35 IILGLAV-ILVYKLLKRLKI--KIDERFVLALIPFVLLGS----SVRALVDAGILPPSYL 87
Query: 213 HITSVVYVLMFLVAVI 228
IT +Y L+F +A+
Sbjct: 88 IITPGIYFLVFAIALP 103
>gnl|CDD|216411 pfam01284, MARVEL, Membrane-associating domain. MARVEL
domain-containing proteins are often found in
lipid-associating proteins - such as Occludin and MAL
family proteins. It may be part of the machinery of
membrane apposition events, such as transport vesicle
biogenesis.
Length = 132
Score = 29.2 bits (66), Expect = 3.4
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 154 IILSCCLGYLAVALFLRLKIVIKIGLLSFMSVVYILLIELSHRTLFTCYDNKVQSVIPLH 213
I+L +A + + + + + SF+ +Y LL+ L + F ++ L
Sbjct: 19 IVLGLIASLIAGSNPSAVNFAVFVAVFSFLIALYFLLLYLFGYSYFPS---IAWPLVDL- 74
Query: 214 ITSVVYVLMFLVAVII 229
I + L +L A I
Sbjct: 75 ILDALAALFWLAAFIA 90
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small
subunit. This model represents one of three built for
the NADPH-dependent or NADH-dependent glutamate synthase
(EC 1.4.1.13 and 1.4.1.14, respectively) small subunit
or homologous region. TIGR01316 describes a family in
several archaeal and deeply branched bacterial lineages
of a homotetrameric form for which there is no large
subunit. Another model describes glutamate synthase
small subunit from gamma and some alpha subdivision
Proteobacteria plus paralogs of unknown function. This
model describes the small subunit, or homologous region
of longer forms proteins, of eukaryotes, Gram-positive
bacteria, cyanobacteria, and some other lineages. All
members with known function participate in NADH or
NADPH-dependent reactions to interconvert between
glutamine plus 2-oxoglutarate and two molecules of
glutamate.
Length = 485
Score = 30.2 bits (68), Expect = 4.1
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 16/60 (26%)
Query: 306 NYHEFYMELDGNN---QGVECLRL------------LNEIIADFDELLGEDRFR-AIDKI 349
++ EF D + Q C+ LN +I +F++L+ R++ A+D++
Sbjct: 24 DWKEFTNPFDKESAKYQAARCMDCGTPFCHNDSGCPLNNLIPEFNDLVFRGRWKEALDRL 83
>gnl|CDD|220693 pfam10325, 7TM_GPCR_Srz, Serpentine type 7TM GPCR chemoreceptor
Srz. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srz is a solo families
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srz appear to be under
strong adaptive evolutionary pressure.
Length = 266
Score = 29.9 bits (68), Expect = 4.5
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 22/75 (29%)
Query: 153 YIILSCCLGYLAVALFLRLKIVIKIGLLSFMSVVYILLIELSHRTLFTCYDNKVQSVIPL 212
++ + + + + F + I+ + LL ++YIL I
Sbjct: 52 FLFIFLIIFLILIFFFTKNSIIGFLFLLLLFLILYILYI--------------------- 90
Query: 213 HITSVVYVLMFLVAV 227
IT V ++L+FL+A+
Sbjct: 91 -ITQVFHLLIFLLAI 104
>gnl|CDD|140232 PTZ00205, PTZ00205, DNA polymerase kappa; Provisional.
Length = 571
Score = 30.4 bits (68), Expect = 4.6
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 581 KGDMTTYF--LTDRKQPGTMRVEELTSLRGGAGLGALSDVNSVNYDLCY 627
+GD+ TY L R PG +V E +L G G+ LSD+ + +LCY
Sbjct: 299 RGDVMTYVRDLGLRSVPGVGKVTE--ALLKGLGITTLSDIYNRRVELCY 345
>gnl|CDD|163561 TIGR03849, arch_ComA, phosphosulfolactate synthase. This model
finds the ComA (Coenzyme M biosynthesis A) protein,
phosphosulfolactate synthase, in methanogenic archaea.
The ComABC pathway is one of at least two pathways to
the intermediate sulfopyruvate. Coenzyme M occurs rarely
and sporadically outside of the archaea, as for expoxide
metabolism in Xanthobacter autotrophicus Py2, but
candidate phosphosulfolactate synthases from that and
other species occur fall below the cutoff and outside
the scope of this model. This model deliberately is
narrower in scope than pfam02679 [Biosynthesis of
cofactors, prosthetic groups, and carriers, Other,
Energy metabolism, Methanogenesis].
Length = 237
Score = 29.7 bits (67), Expect = 5.2
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 26/158 (16%)
Query: 306 NYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAAVG-LMP 364
+ E+ E D G E + EI E+ E+R I++ K G ++ VG P
Sbjct: 72 KFDEYLNECD--ELGFEAV----EISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSP 125
Query: 365 DYRILDEDETSPDRFRAIDKIKTVGSTYM--------AAVGLMPDYRILDEDETSPGAYL 416
+ D + T DR + I+K G+ Y+ +GL + + EDE L
Sbjct: 126 E---KDSELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDE------L 176
Query: 417 STLVEFVFAMRDKLIVINENSYNNFMLRVG--INIGPV 452
L E V + +N F+L+ G +N+G +
Sbjct: 177 DVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNI 214
>gnl|CDD|227314 COG4981, COG4981, Enoyl reductase domain of yeast-type FAS1 [Lipid
metabolism].
Length = 717
Score = 29.4 bits (66), Expect = 7.4
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 292 QSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKT 351
+ G + + + E+D N+G RLL+E+ D + R I+ +
Sbjct: 285 GTGKAPGGMASVRSQLGADIHEID--NRGAMAGRLLDEVAGD-LPAVAARRDEIIEALNK 341
Query: 352 VGSTYMAAVGLM 363
Y V M
Sbjct: 342 TAKPYFGDVADM 353
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase
inhibitor; Provisional.
Length = 538
Score = 29.4 bits (66), Expect = 8.4
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 567 PYEF------QCRGKVKVKGKGDMTTYFLTDRKQPGTMRVEELTSLRGGAGLGALSDVNS 620
PYE+ QC + + K + Y+LT QPG M EE+ +L A G LS++N
Sbjct: 29 PYEYGKFSVKQCLKQARRLSK--VINYYLTHENQPGKMTHEEIGAL---ADCGELSELN- 82
Query: 621 VNY 623
V+Y
Sbjct: 83 VDY 85
>gnl|CDD|225444 COG2891, MreD, Cell shape-determining protein [Cell envelope
biogenesis, outer membrane].
Length = 167
Score = 28.4 bits (64), Expect = 8.5
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 149 PLPQYIILSCCLGYLAVALFLRLKI------VIKIGLLSFMSVVYILLIELS-HRTLFTC 201
L + + +GYL L L+ + + LL F+ V + L+EL T+FT
Sbjct: 73 LLGVHALGFSLIGYLVAKLQKVLRNNALWQQALLVVLLVFLLEVLVFLLELLLGNTIFTW 132
Query: 202 YDNKVQSVIPLHITSVVYVLMF 223
+ ++P + V+ L+
Sbjct: 133 SQFVLSRLLPTLLWPWVFALLL 154
>gnl|CDD|232817 TIGR00081, purC, phosphoribosylaminoimidazole-succinocarboxamide
synthase. Alternate name: SAICAR synthetase purine de
novo biosynthesis. E.coli example noted as homotrimer.
Check length. Longer versions may be multifunctional
enzymes [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 237
Score = 28.9 bits (65), Expect = 8.5
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 15/75 (20%)
Query: 325 RLLNEIIADFDELLGEDRFRAID----KIKTVGSTYMAAVGL-MPDYRI---LDE----- 371
+LNE A+ L E+ I K+ V Y G+ + D+++ LDE
Sbjct: 132 PMLNESYAEALGLATEEELERIKELALKVNEVLKKYFDEKGIILVDFKLEFGLDEEGNLI 191
Query: 372 --DETSPDRFRAIDK 384
DE SPD R DK
Sbjct: 192 LADEVSPDTCRLWDK 206
>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional.
Length = 358
Score = 28.8 bits (64), Expect = 9.8
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 16/75 (21%)
Query: 169 LRLKIVIKIGLLSFMSVVYILL----IELSHRTLFTCYDNKVQSVIPLHITSVVYVLMFL 224
L + I+ KIGLL F+ +Y++ IE S+ TL + I+++ L F+
Sbjct: 73 LSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASA------------ISNITPALTFI 120
Query: 225 VAVIIHGRQVEWTGR 239
+A+I +V + R
Sbjct: 121 LAIIFRMEKVSFKER 135
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.405
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,625,567
Number of extensions: 3635586
Number of successful extensions: 2946
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2929
Number of HSP's successfully gapped: 41
Length of query: 722
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 618
Effective length of database: 6,324,786
Effective search space: 3908717748
Effective search space used: 3908717748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.0 bits)