RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9752
(722 letters)
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 298 bits (766), Expect = 3e-97
Identities = 118/243 (48%), Positives = 148/243 (60%), Gaps = 35/243 (14%)
Query: 286 NMDLYHQSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRA 345
N +LYHQSY V V+FASI ++ EFY E D N +G+ECLRLLNEIIADFD+LL + +F
Sbjct: 4 NEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSG 63
Query: 346 IDKIKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDYRIL 405
++KIKT+GSTYMAA GL E
Sbjct: 64 VEKIKTIGSTYMAATGLSAIPSQEHAQEPER----------------------------- 94
Query: 406 DEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYD 465
++ T+VEF +A+ KL IN++S+N+F LRVGIN GPV+AGVIGA+KPQYD
Sbjct: 95 ------QYMHIGTMVEFAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYD 148
Query: 466 IWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYPYEFQCRGKVKVKGKGDMTTYFLTDR 525
IWGNTVNVASRMDSTG+ + QVTEE +L+ Y CRG + VKGKGD+ TYF+
Sbjct: 149 IWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFVNTE 208
Query: 526 KQP 528
Sbjct: 209 MSR 211
Score = 71.1 bits (175), Expect = 4e-14
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 552 KVKVTEEVYQVLKNYPYEFQCRGKVKVKGKGDMTTYFLTDRKQP 595
K++VTEE +L+ Y CRG + VKGKGD+ TYF+
Sbjct: 168 KIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFVNTEMSR 211
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 183 bits (466), Expect = 1e-53
Identities = 58/249 (23%), Positives = 100/249 (40%), Gaps = 52/249 (20%)
Query: 292 QSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKT 351
+ Y V ++F+ I ++ F + ++ + LLN++ FD L + + K++T
Sbjct: 8 KRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVET 67
Query: 352 VGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETS 411
VG YM GL P+ I + + L
Sbjct: 68 VGDKYMTVSGL-PEPCIHHARS-------------------ICHLAL------------- 94
Query: 412 PGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTV 471
M + + + + + +GI+ G VV GVIG R P+Y ++GNTV
Sbjct: 95 -------------DMMEIAGQVQVDG-ESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTV 140
Query: 472 NVASRMDSTGLPNHTQVTEEVYQVLKNYP-----YEFQCRGKVKVKGKGDMTTYFLTDRK 526
N+ SR ++TG V+E Y+ L + + + RG V +KGK + + RK
Sbjct: 141 NLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSRK 200
Query: 527 QPGTMRVEE 535
GT ++
Sbjct: 201 NTGTEETKQ 209
Score = 59.7 bits (145), Expect = 3e-10
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 552 KVKVTEEVYQVLKNYP-----YEFQCRGKVKVKGKGDMTTYFLTDRKQPGTMRVEE 602
K+ V+E Y+ L + + + RG V +KGK + + RK GT ++
Sbjct: 154 KINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSRKNTGTEETKQ 209
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 167 bits (426), Expect = 3e-48
Identities = 70/239 (29%), Positives = 108/239 (45%), Gaps = 54/239 (22%)
Query: 292 QSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKT 351
Y + V+FA I + E + + +R L+ + + FDEL+ + ++KI+
Sbjct: 6 DKYDEASVLFADIVGF----TERASSTAPADLVRFLDRLYSAFDELVDQ---HGLEKIEV 58
Query: 352 VGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETS 411
G +YM G+ P R PD +A+
Sbjct: 59 SGDSYMVVSGV-PRPR--------PDHTQAL----------------------------- 80
Query: 412 PGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTV 471
+F M + + + N LRVG+ GPVVAGV+G+R+ +Y +WG+ V
Sbjct: 81 --------ADFALDMTNVAAQLKDPRGNPVPLRVGLATGPVVAGVVGSRRFRYCVWGDAV 132
Query: 472 NVASRMDSTGLPNHTQVTEEVYQVLKNYPYEFQCRGKVKVKGKGDMTTYFLTDRKQPGT 530
NVASRM+ST QV +EVY+ LK+ + + RG + VKGKG M T++L RK
Sbjct: 133 NVASRMESTDSVGQIQVPDEVYERLKDD-FVLRERGHINVKGKGVMRTWYLIGRKVAAD 190
Score = 59.9 bits (146), Expect = 2e-10
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 552 KVKVTEEVYQVLKNYPYEFQCRGKVKVKGKGDMTTYFLTDRKQPGT 597
+++V +EVY+ LK+ + + RG + VKGKG M T++L RK
Sbjct: 146 QIQVPDEVYERLKDD-FVLRERGHINVKGKGVMRTWYLIGRKVAAD 190
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 156 bits (396), Expect = 9e-44
Identities = 59/261 (22%), Positives = 94/261 (36%), Gaps = 58/261 (22%)
Query: 270 LPSHVAMHFLDNQFRSNMDLYHQSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNE 329
+ + + D F +Y Q + V ++FA I + + E + LNE
Sbjct: 11 MKADINAKQEDMMFHK---IYIQKHDNVSILFADIEGFTSLASQCTAQ----ELVMTLNE 63
Query: 330 IIADFDELLGEDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVG 389
+ A FD+L E +IK +G Y GL P+ R D
Sbjct: 64 LFARFDKLAAE---NHCLRIKILGDCYYCVSGL-PEAR--------ADHAHCC------- 104
Query: 390 STYMAAVGLMPDYRILDEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINI 449
VE M + + ++ E + N +RVGI+
Sbjct: 105 ------------------------------VEMGMDMIEAISLVREMTGVNVNMRVGIHS 134
Query: 450 GPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKN-YPYEFQCRGK 508
G V GV+G RK Q+D+W N V +A+ M++ G +T+ L Y E C G+
Sbjct: 135 GRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLNGDYEVEPGCGGE 194
Query: 509 VKVKGKG-DMTTYFLTDRKQP 528
K + T+ + Q
Sbjct: 195 RNAYLKEHSIETFLILRCTQK 215
Score = 45.3 bits (108), Expect = 2e-05
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 552 KVKVTEEVYQVLKN-YPYEFQCRGKVKVKGKG-DMTTYFLTDRKQP 595
++ +T+ L Y E C G+ K + T+ + Q
Sbjct: 170 RIHITKATLSYLNGDYEVEPGCGGERNAYLKEHSIETFLILRCTQK 215
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 154 bits (390), Expect = 2e-43
Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 11/152 (7%)
Query: 377 DRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPGAYLSTLVEFVFAMRDKLIVINEN 436
+ + + K++T+G YM + + L+EF M ++ + +
Sbjct: 48 EEYPQLYKVETIGDAYMVVCNV-TVPC---------DDHADVLLEFALRMHEEASRVASS 97
Query: 437 SYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVL 496
+RVG++ GPVVAGV+G + P++ ++G+TVN ASRM+S G ++E Y L
Sbjct: 98 LGEPVRIRVGMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHISEACYCCL 157
Query: 497 KNYP-YEFQCRGKVKVKGKGDMTTYFLTDRKQ 527
++ +E + RG + VKGKG M TY L+ ++
Sbjct: 158 RSKERFEIRERGNITVKGKGTMRTYLLSPLER 189
Score = 61.2 bits (149), Expect = 6e-11
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 552 KVKVTEEVYQVLKNYP-YEFQCRGKVKVKGKGDMTTYFLTDRKQ 594
++ ++E Y L++ +E + RG + VKGKG M TY L+ ++
Sbjct: 146 QIHISEACYCCLRSKERFEIRERGNITVKGKGTMRTYLLSPLER 189
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 147 bits (374), Expect = 1e-40
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 15/150 (10%)
Query: 384 KIKTVGSTYMAAVGLMPDYRILDEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFML 443
K++T+G Y A GL + + M + + +
Sbjct: 59 KVETIGDAYCVAGGL-HKESDTHAVQ---------IALMALKMMELSDEVMSPHGEPIKM 108
Query: 444 RVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYP-YE 502
R+G++ G V AGV+G + P+Y ++GN V +A++ +S +P V+ Y++LK+ P +
Sbjct: 109 RIGLHSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFV 168
Query: 503 FQCRGKVKVKGKGD----MTTYFLTDRKQP 528
F R + ++ +FL +Q
Sbjct: 169 FTPRSREELPPNFPSEIPGICHFLDAYQQG 198
Score = 48.8 bits (117), Expect = 2e-06
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 552 KVKVTEEVYQVLKNYP-YEFQCRGKVKVKGKGD----MTTYFLTDRKQPGTMRVEELTSL 606
K+ V+ Y++LK+ P + F R + ++ +FL +Q +
Sbjct: 150 KINVSPTTYRLLKDCPGFVFTPRSREELPPNFPSEIPGICHFLDAYQQGTNSKPCFQKKD 209
Query: 607 RGGAGLGALSDVNSVN 622
L + ++
Sbjct: 210 VEDGNANFLGKASGID 225
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 108 bits (271), Expect = 2e-25
Identities = 36/187 (19%), Positives = 64/187 (34%), Gaps = 40/187 (21%)
Query: 352 VGSTYMAAVGLMPDYRILDEDETSPDRFRAID-----KIKTVGSTYMAAVGLMPDYRILD 406
VG T + V + + R + IKT+G M
Sbjct: 224 VGFTQLGEV--VSAEELGHLAGRLAGLARDLTAPPVWFIKTIGDAVMLVCP--------- 272
Query: 407 EDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYDI 466
P L++ V + + + N LR G+ G V+ D
Sbjct: 273 ----DPAP----LLDTVLKLVEVVDTDNNF----PRLRAGVASGMAVSRA-------GDW 313
Query: 467 WGNTVNVASRMDSTGLPNHTQVTEEVYQVLKNYP----YEFQCRGKVKVKG-KGDMTTYF 521
+G+ VNVASR+ P V + V + L + P +++ G +++G +GD+ +
Sbjct: 314 FGSPVNVASRVTGVARPGAVLVADSVREALGDAPEADGFQWSFAGPRRLRGIRGDVRLFR 373
Query: 522 LTDRKQP 528
+
Sbjct: 374 VRRGATR 380
Score = 40.3 bits (94), Expect = 0.002
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 552 KVKVTEEVYQVLKNYP----YEFQCRGKVKVKG-KGDMTTYFLTDRKQP 595
V V + V + L + P +++ G +++G +GD+ + +
Sbjct: 332 AVLVADSVREALGDAPEADGFQWSFAGPRRLRGIRGDVRLFRVRRGATR 380
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 84.1 bits (208), Expect = 2e-18
Identities = 32/164 (19%), Positives = 51/164 (31%), Gaps = 24/164 (14%)
Query: 384 KIKTVGSTYMAAVGL-------------------MPDYRILDEDETSPGAYLSTLVEFVF 424
++KTVG ++M A + D E+
Sbjct: 56 EVKTVGDSFMIASKSPFAAVQLAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTP 115
Query: 425 AMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGLPN 484
+ +N +RVGI+ G K YD +G T N+A+R +S
Sbjct: 116 PTAHMDPEVYSRLWNGLRVRVGIHTGLCDIRHDEVTK-GYDYYGRTPNMAARTESVANGG 174
Query: 485 HTQVTEEVYQVLKN---YPYEFQCRGKVKVKGKGD-MTTYFLTD 524
+T Y L + G V ++G D + Y L
Sbjct: 175 QVLMTHAAYMSLSAEDRKQIDVTALGDVALRGVSDPVKMYQLNT 218
Score = 29.8 bits (67), Expect = 2.4
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 552 KVKVTEEVYQVLKN---YPYEFQCRGKVKVKGKGD-MTTYFLTD 591
+V +T Y L + G V ++G D + Y L
Sbjct: 175 QVLMTHAAYMSLSAEDRKQIDVTALGDVALRGVSDPVKMYQLNT 218
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
PDB: 1ybu_A*
Length = 184
Score = 78.1 bits (193), Expect = 9e-17
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 420 VEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDS 479
+ + D + + +R+GI+ G V D+ G V++ +R+ +
Sbjct: 81 IACADDIVDAVAALG------IEVRIGIHAGEVEVRDASHG---TDVAGVAVHIGARVCA 131
Query: 480 TGLPNHTQVTEEVYQVLKNYPYEFQCRGKVKVKGK-GDMTTYFLT 523
P+ V+ V ++ + F RG+ ++KG G L
Sbjct: 132 LAGPSEVLVSSTVRDIVAGSRHRFAERGEQELKGVPGRWRLCVLM 176
Score = 30.3 bits (69), Expect = 1.2
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 555 VTEEVYQVLKNYPYEFQCRGKVKVKGK-GDMTTYFLT 590
V+ V ++ + F RG+ ++KG G L
Sbjct: 140 VSSTVRDIVAGSRHRFAERGEQELKGVPGRWRLCVLM 176
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 72.6 bits (179), Expect = 1e-14
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 7/117 (5%)
Query: 425 AMRDKLIVINE----NSYNNFMLRVGINIGPVVAGVIGARK-PQYDIWGNTVNVASRMDS 479
M+ L +N+ + +GIN G VV G IG+ K +Y + G VN+ R++S
Sbjct: 90 EMQLALREVNQQVTGLGLQPLEMGIGINTGEVVVGNIGSEKRTKYGVVGAQVNLTYRIES 149
Query: 480 TGLPNHTQVTEEVYQVLKNYPYEFQCRGKVKVKGKGD-MTTYFLTDRKQPGTMRVEE 535
++ + + V+ KG D + + + +P + +
Sbjct: 150 YTTGGQIFISSTTLEAAGDR-VHVNGNRTVQPKGVKDPVVIWDVAGVGEPYNLSLAV 205
Score = 29.8 bits (68), Expect = 2.0
Identities = 5/49 (10%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 555 VTEEVYQVLKNYPYEFQCRGKVKVKGKGD-MTTYFLTDRKQPGTMRVEE 602
++ + + V+ KG D + + + +P + +
Sbjct: 158 ISSTTLEAAGDR-VHVNGNRTVQPKGVKDPVVIWDVAGVGEPYNLSLAV 205
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 69.5 bits (171), Expect = 8e-14
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 425 AMRDKLIVIN-----ENSYNNFMLRVGINIGPVVAGVIGA-RKPQYDIWGNTVNVASRMD 478
AMR + V+ + +R+GIN G G GA + Y I G VN+ASR++
Sbjct: 87 AMRKHMKVLRQQWRAQGITKPLEIRMGINTGYCTVGNFGADTRMDYTIIGREVNLASRLE 146
Query: 479 STGLPNHTQVTEEVYQVLKNYPYEFQCRGKVKVKGKGD-MTTYFLTDRK 526
S ++ E Y ++K+ + +G++ VKG + Y + D +
Sbjct: 147 SASEAGEILISHETYSLIKDV-IMCRDKGQIAVKGFSRPVQIYQVVDSR 194
Score = 29.1 bits (66), Expect = 4.2
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 555 VTEEVYQVLKNYPYEFQCRGKVKVKGKGD-MTTYFLTDRK 593
++ E Y ++K+ + +G++ VKG + Y + D +
Sbjct: 156 ISHETYSLIKDV-IMCRDKGQIAVKGFSRPVQIYQVVDSR 194
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 68.1 bits (167), Expect = 3e-13
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 420 VEFVFAMRDKLIVINENSYNN--FMLRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRM 477
+ ++ + E++ R+GINIG +V DI+G+ VNVA+R+
Sbjct: 71 LRCALEIQQAMQQREEDTPRKERIQYRIGINIGDIVLE-------DGDIFGDAVNVAARL 123
Query: 478 DSTGLPNHTQVTEEVYQVLKNY-PYEFQCRGKVKVKGK 514
++ P V++ V+Q+ ++ F G KVK
Sbjct: 124 EAISEPGAICVSDIVHQITQDRVSEPFTDLGLQKVKNI 161
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 64.9 bits (159), Expect = 6e-12
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 425 AMRDKLIVINE----------NSYNNFMLRVGINIGPVVAGVIGARK-PQYDIWGNTVNV 473
M L +N+ N R GI+ G V G+ G+++ + G +VN+
Sbjct: 105 QMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAVVGLFGSQERSDFTAIGPSVNI 164
Query: 474 ASRMDSTGLPNHTQVTEEVYQVLKNYPYEFQCRGKVKVKGK 514
A+R+ PN V+ V Q + + E R +++KG
Sbjct: 165 AARLQEATAPNSIMVSAMVAQYVPD--EEIIKREFLELKGI 203
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 2e-09
Identities = 76/485 (15%), Positives = 128/485 (26%), Gaps = 156/485 (32%)
Query: 254 EMDALQHSNKRILFNLLPSHVAMHFLDNQFRSNMDLYH-QSYSKVGVVFASITNYHEFYM 312
E Q+ K IL F D F N D Q K + +
Sbjct: 10 ETGEHQYQYKDILS---------VFEDA-FVDNFDCKDVQDMPK--SILSK--------E 49
Query: 313 ELDGNNQGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVG-STYMAAVG--LMPDYRIL 369
E+D II D + G R + + V L +Y+ L
Sbjct: 50 EID-------------HIIMSKDAVSGTLRL--FWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 370 DEDETSPDRFRAIDKIKTVGST-YMAAVGLMPDYRILDEDETSPGAYLSTLVEFVFAMRD 428
+ + ++ + Y+ + Y D + Y + ++ +R
Sbjct: 95 MS------PIKTEQRQPSMMTRMYIEQRDRL--YN--DNQVFAK--YNVSRLQPYLKLRQ 142
Query: 429 KLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGL----PN 484
L LR N+ ++ GV+G+ G T S +
Sbjct: 143 AL----------LELRPAKNV--LIDGVLGS--------GKTWVALDVCLSYKVQCKMDF 182
Query: 485 --------HTQVTEEVYQVLKNYPYEFQCRGKVKVKGKGDMTTYFLTDRKQPGTMRVEEL 536
+ E V ++L+ Y+ +D +R+ +
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS------------RSDHSSNIKLRIHSI 230
Query: 537 TS-LRGGAGLVSLCRCKVKVTEEVY--QVLKNYPYEFQCRGKVKVKGKGDMTTYF--LTD 591
+ LR C + V V + + C K+ + TT F +TD
Sbjct: 231 QAELRRLLKSKPYENCLL-VLLNVQNAKAWN--AFNLSC--KILL------TTRFKQVTD 279
Query: 592 RKQPGTMRVEELTSLRGG----AGLGALSD-VNSVNYDL----CYGNP-----------D 631
T L L ++ DL NP D
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 632 HRNDDDN--------------TSLSSRASS--R-------VFDSDALVSVDSLSVL-YDS 667
DN +SL+ + R VF A + LS++ +D
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 668 EYEDP 672
D
Sbjct: 400 IKSDV 404
Score = 56.0 bits (134), Expect = 4e-08
Identities = 76/492 (15%), Positives = 160/492 (32%), Gaps = 126/492 (25%)
Query: 12 PVLFNSLHV-RSALGAAHKRKL-SFKNVSNVVVQ-LLHSIKYSMEVPFSNMAA--VQEHK 66
+F +V R ++ L + NV++ +L S K + +A +K
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-------TWVALDVCLSYK 175
Query: 67 PQSRKDAVVLMLLLAVRLKWILWDISQSCVLRLAITVFTIVLVYTVAQVNVFTCREDVPC 126
Q + D + W+ ++ + + L+Y + +T R D
Sbjct: 176 VQCKMDFKIF---------WL--NLKNCNSPETVLEMLQ-KLLYQIDPN--WTSRSDHSS 221
Query: 127 LVPTNTTHTIIWSSTNIDHRACPLPQYIILSCCLGYL-------AVALF-LRLKIVI--- 175
+ + + P CL L A F L KI++
Sbjct: 222 NIKLRIHSIQAELRRLLKSK--PYEN------CLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 176 KIGLLSFMSVVYILLIELSH----------RTLF-TCYDNKVQ-------SVIPLHITSV 217
+ F+S I L H ++L D + Q + P ++
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-- 331
Query: 218 VYVLMFLVAVIIHGRQVEWTGRLDFLWQVQACEEKKEM-----DALQHSNKRILFNLL-- 270
++A I + D W+ C++ + + L+ + R +F+ L
Sbjct: 332 ------IIAESIR----DGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 271 -------PSHV-AMHFLDNQFRSNMDLYHQSYSKVGVV----FASITNYHEFYMELDGNN 318
P+ + ++ + D M + ++ + +V S + Y+EL
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKL 439
Query: 319 QGVECLRLLNEIIADFDELLGEDRFRAIDKIKTVGSTYMAA-VGLMPDY--RILDEDETS 375
+ L+ I D + F + D I Y + +G + + ++ E
Sbjct: 440 EN---EYALHRSIVDHYNIP--KTFDSDDLIPPYLDQYFYSHIG----HHLKNIEHPERM 490
Query: 376 PDRFRAI--D------KIKTVGSTYMAAVGLMPD------YR--ILDEDETSPGAYLSTL 419
FR + D KI+ + + A+ ++ Y+ I D D ++ +
Sbjct: 491 -TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK-YERLVNAI 548
Query: 420 VEFVFAMRDKLI 431
++F+ + + LI
Sbjct: 549 LDFLPKIEENLI 560
Score = 51.8 bits (123), Expect = 7e-07
Identities = 84/652 (12%), Positives = 176/652 (26%), Gaps = 182/652 (27%)
Query: 106 IVLVYTVAQVNVFTCR--EDVPCLVPTNTTHTIIWSSTNIDHRACPLPQYIILSCCL--G 161
I+ V+ A V+ F C+ +D+P + + I S + + L
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT-----LRLFWTLLSKQ 75
Query: 162 YLAVALFLRLKIVIKIGLLSFMSVVYILLIELSHRT-LFTCYDNK----VQSVIPLHITS 216
V F+ + I L MS + + S T ++ ++ Q +++
Sbjct: 76 EEMVQKFVEEVLRINYKFL--MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS- 132
Query: 217 VVYVLMFLVAVIIHGRQVEWTGRLDFLWQVQAC--EEKKEMDALQH----SNKRILFNLL 270
RL +++ E + + L S K +
Sbjct: 133 ----------------------RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV---- 166
Query: 271 PSHVAMHFLDNQFRSNMDLYHQSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEI 330
L + + MD + F++ L N L +L ++
Sbjct: 167 ---ALDVCLSYKVQCKMDF--------KI----------FWLNLKNCNSPETVLEMLQKL 205
Query: 331 IADFDELLGEDRFRAIDKIKTVGSTYMAAVGLM--PDYR----ILDE--DETSPDRF--- 379
+ D + + + S L+ Y +L + + + F
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 380 -------RAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPGAYLSTLVEFVFAMRDKLIV 432
R + + + L L DE S L++++ L
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-----KSLLLKYLDCRPQDLP- 319
Query: 433 INENSYNNFMLRVGINIGPVVAGVIGARKPQY-DIWGNTVNV-ASRMDSTG--------- 481
R + P +I W N +V ++ +
Sbjct: 320 -----------REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 482 ------------LPNHTQVTEEVYQVL-KNYPYEF------QCRGKVKVKGKGDMTTYFL 522
P + + ++ + + V+ + +T +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 523 TDRKQPGTMRVEELTSLRGGAGLVSLCRCKVKVTEEVYQVLKNYP-----------YEFQ 571
+++E +L +V + Y + K + Y +
Sbjct: 429 PSIYLELKVKLENEYALH--RSIV-----------DHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 572 CRG----KVKVKGKGDM-TTYFLTDRKQPGTMRVEELTSLRGGAGLGALSDVNSVNYDLC 626
G ++ + + FL R +R + G+ L L + Y
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK--FYK-- 531
Query: 627 YGNPDHRNDDDNTSLSSRASSRVFDS--DALVSVDSLSVLYDSEYEDPLRYA 676
+ D+D R+ ++ D L ++ L S+Y D LR A
Sbjct: 532 ----PYICDNDPK------YERLVNAILDFLPKIE--ENLICSKYTDLLRIA 571
Score = 46.8 bits (110), Expect = 3e-05
Identities = 53/367 (14%), Positives = 111/367 (30%), Gaps = 92/367 (25%)
Query: 20 VRSALGAAHKRKLSFKNVSNVVVQLLHSIKYSMEVPFSNMA--AVQEHKPQSRKDAVVLM 77
V L AA +S + S + + Q+ + +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTP-----DEVKSL-LLKYLDCRPQDLPREVLTTNPRRL 330
Query: 78 LLLAVRLK-----WILWDISQSCVLRLAITVFTIVL-------VYTVAQVNVFTCREDVP 125
++A ++ W W L I VL ++ +++VF
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD--RLSVF--PPSAH 386
Query: 126 CLVPTNTTHTIIWSSTNIDHRACPLPQYIILSCCLGYLAVA------------LFLRLKI 173
+PT ++IW ++ + +++ Y V ++L LK+
Sbjct: 387 --IPTILL-SLIWF--DVIKSDVMV----VVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 174 VIKIGLLSFMSVVYILLIELSHRTLFTCYDNKVQ----SVIPLHITSVVYVLMFLVAVII 229
++ L HR++ Y+ +IP ++ Y +
Sbjct: 438 KLEN------------EYAL-HRSIVDHYNIPKTFDSDDLIPPYLDQ--YFYSHIGH--- 479
Query: 230 HGRQVEWTGR--------LDFLWQVQACEEKKEMDALQHSNKRILFNLLPSHVAMHFLDN 281
H + +E R LDF + E+K D+ + + N L + F
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRF----LEQKIRHDSTAWNASGSILNTL---QQLKFYKP 532
Query: 282 QFRSNMDLYHQSYSKVGVVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGED 341
N Y + + +F +++ N + LL + DE + E+
Sbjct: 533 YICDNDPKYERL----------VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 342 RFRAIDK 348
+ + +
Sbjct: 583 AHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 3e-07
Identities = 98/662 (14%), Positives = 193/662 (29%), Gaps = 228/662 (34%)
Query: 42 VQLLH-SIKYSMEVPFSNMAAVQEHK-------------------PQSRKDAVVLMLLLA 81
+ L H S+++ + VP ++ + + P + + L+
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE------LVG 62
Query: 82 VRLKWILWDISQSC------VLRLAITVFTIVLVYTVAQVNVFTCREDVPCLVPTNTTHT 135
L ++ + S VL L +T F N + D+ H
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFE----------NCYLEGNDI---------HA 103
Query: 136 IIWSSTNIDHRACPLPQYIILSCCLGYLAVALFLRLKIV----------IKIGLLSFMSV 185
+ + ++ + ++ Y+ + + + G +++
Sbjct: 104 LA-AKLLQENDTTLVKTKELIKN---YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 186 --------VYILLIELSHRTLFTCYDNKVQSVIPLHITSVVYVLMFLVAVIIHGRQVEWT 237
Y EL R L+ Y V +I L L+ + +V
Sbjct: 160 FGGQGNTDDY--FEEL--RDLYQTYHVLVGDLIKFSAE----TLSELIRTTLDAEKVFTQ 211
Query: 238 GRLDFL-WQVQACEEKKEMDALQH---SNKRI-LFNLLPSH--VAMHFLD---NQFRSNM 287
G L+ L W ++ + D L S I + L +H V L + RS +
Sbjct: 212 G-LNILEW-LENPSNTPDKDYLLSIPISCPLIGVIQL--AHYVVTAKLLGFTPGELRSYL 267
Query: 288 DLYHQSYSKVG------VVFASITNYHEFYMELDGNNQGVECLRLLNEIIADFDELLGED 341
+ + V A ++ F+ + + +L F +G
Sbjct: 268 ----KGATGHSQGLVTAVAIAETDSWESFF------VSVRKAITVL------F--FIG-- 307
Query: 342 RFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKIKTVGSTYMAAV-GLMP 400
R + +T + ++ D L+ +E P + M ++ L
Sbjct: 308 -VRCYE---AYPNTSLPP-SILEDS--LENNEGVP--------------SPMLSISNL-T 345
Query: 401 DYRILDE-DETSPGAYLSTLVEFVFAMRDKLIVI-NENSYNNFMLRVGINIGPVVAG--- 455
++ D ++T+ ++L K + I N N VV+G
Sbjct: 346 QEQVQDYVNKTN--SHLP---------AGKQVEISLVNGAKNL----------VVSGPPQ 384
Query: 456 -----VIGARK----PQYDIW-----GNTVNVASRMDSTGLPNHTQ----VTEEVYQVLK 497
+ RK D + ++R P H+ ++ + + L
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 498 NYPYEFQCRGKVKVKGKGDMTT--YFLTDRKQPGTMRVEELTSLRGGAGLV--SLCRCKV 553
+ V K D+ Y D G + LR +G + + C
Sbjct: 445 --------KNNVSFNAK-DIQIPVYDTFD----G-------SDLRVLSGSISERIVDC-- 482
Query: 554 KVTEEVY-QVLKNYPY----EFQCRGKVKVKGKGDMTTYFLTDRKQPGT-MRVEELTSLR 607
+ V + + +F G G G LT R + GT +RV +L
Sbjct: 483 IIRLPVKWETTTQFKATHILDF---GPGGASGLGV-----LTHRNKDGTGVRVIVAGTLD 534
Query: 608 GG 609
Sbjct: 535 IN 536
Score = 50.4 bits (120), Expect = 2e-06
Identities = 58/382 (15%), Positives = 125/382 (32%), Gaps = 124/382 (32%)
Query: 406 DEDETSPGAYLSTLVEFVFAMRDKLIVINENSYNNFMLRVGINIGPVVAGVIGARKPQYD 465
D++ T+P + + +V ++ + ++ V+ + + Y
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPS---KVGQFD-----------QVLNLCLTEFENCY- 95
Query: 466 IWGNTVN-VASRMDSTGLPNHTQVTEEVYQVLKNY---------PYE-------FQC--R 506
+ GN ++ +A+++ L + + +++KNY P++ F+
Sbjct: 96 LEGNDIHALAAKL----LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 507 GKVKVK----GKGDMTTYF--LTDRKQPGTMRVEELTSLRGGAGLVSLCRCKVKVTE--- 557
G ++ G+G+ YF L D Q + V +L L L R + +
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK-FSAETLSELIRTTLDAEKVFT 210
Query: 558 ---EVYQVLKNY----PYEFQCRGKVKVKGKG--DMTTYFLTDRKQ---PGTMRVEELTS 605
+ + L+N ++ + G + Y +T + PG +R +
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR----SY 266
Query: 606 LRGGAGLG-------ALSDVNSVNYDLCYGNPDHRNDDDNTSLSSRA----------SSR 648
L+G G A+++ +S + +A
Sbjct: 267 LKGATGHSQGLVTAVAIAETDS--------------WESFFVSVRKAITVLFFIGVRCYE 312
Query: 649 VFDSDAL---VSVDS-----------LSV--LYDSEYEDPLRYAPIHLPPVGQDEH-SIA 691
+ + +L + DS LS+ L + +D + HLP + I+
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA---GKQVEIS 369
Query: 692 NIRSVSQSITRNF---GQPPPS 710
+ +N G PP S
Sbjct: 370 LVNG-----AKNLVVSG-PPQS 385
Score = 42.0 bits (98), Expect = 9e-04
Identities = 42/253 (16%), Positives = 81/253 (32%), Gaps = 79/253 (31%)
Query: 521 FLTDRKQPGTMR---------VEELTS--LRGG---AGLVSLCRCKVKVTEEVYQVLKNY 566
+++ +P + + E + L G A L + + +++KNY
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 567 ---------PYE-------FQC--RGKVKVK----GKGDMTTYFLTDRKQPGTMRVEELT 604
P++ F+ G ++ G+G+ YF EEL
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF------------EELR 174
Query: 605 SL--RGGAGLGALSDVNSVNYDLCYGNPDHRNDDDNTSLSSRASSRVFDSDA-LVSVDSL 661
L +G L + L + R D + + ++ + L + +
Sbjct: 175 DLYQTYHVLVGDL--IKFSAETL---SELIRTTLD----AEKVFTQGLNILEWLENPSNT 225
Query: 662 SVLYDSEYEDPLRYAPIHLPPVG--QDEH----------SIANIRSVSQSIT-RNFGQPP 708
D +Y L PI P +G Q H + +RS + T + G
Sbjct: 226 P---DKDY---LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 709 PSVPSESDSDAAW 721
+E+DS ++
Sbjct: 280 AVAIAETDSWESF 292
Score = 37.7 bits (87), Expect = 0.017
Identities = 24/157 (15%), Positives = 43/157 (27%), Gaps = 50/157 (31%)
Query: 19 HVRSALGAAHKRKLSFKN-VSNVVV-----------QLLHSIKYSME-----VPFSNMAA 61
S L A + ++S N N+VV L K +PFS
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS---- 410
Query: 62 VQEHKP--QSR-------------KDAVVLMLLLAVRLKWILWDISQSCVLRLAITVFTI 106
E K +R A L + + + ++ + I V+
Sbjct: 411 --ERKLKFSNRFLPVASPFHSHLLVPASDL-INKDLVKNNVSFNAKD-----IQIPVYD- 461
Query: 107 VLVYTVAQVNVFTCREDV-PCLVPTNTTHTIIWSSTN 142
T ++ + +V + W +T
Sbjct: 462 ----TFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Score = 37.3 bits (86), Expect = 0.023
Identities = 44/254 (17%), Positives = 72/254 (28%), Gaps = 106/254 (41%)
Query: 287 MDLYHQS-------------------YSKVGVVF---ASITNY---------HEFYMEL- 314
MDLY S +S + +V ++T + E Y +
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 315 -----DGNNQGVECLRLLNEIIADF-----DELLGEDRF--RAIDKIKTVGSTYMAAV-- 360
DG + + + +NE + LL +F A + + AA
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA---LTLME---KAAFED 1746
Query: 361 ----GLMPD-----------Y-------RILD-EDETSPDRFR------AIDKIKTVGST 391
GL+P Y ++ E +R A+ + + S
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 392 Y-MAAVGLMPDYRILDEDETSPGAYLSTLVEFVFAMRDKLIVI-NENS----YNNFMLRV 445
Y M A+ ++ L +VE V L+ I N N Y
Sbjct: 1807 YGMIAINPGRVAASFSQEA------LQYVVERVGKRTGWLVEIVNYNVENQQY------- 1853
Query: 446 GINIGPVVAGVIGA 459
V AG + A
Sbjct: 1854 ------VAAGDLRA 1861
>3tzg_A Hypothetical protein BVU_2266; beta barrel, structural genomics,
joint center for structura genomics, JCSG, protein
structure initiative; 2.80A {Bacteroides vulgatus}
Length = 252
Score = 30.4 bits (68), Expect = 1.7
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 486 TQVTEEVYQVLKNYPYEFQCRGKV------KVKGKGDMTTYFLTDRKQPGTMRVEELTSL 539
T +T E QVLK E+ GK+ V+ +GD T + G +
Sbjct: 14 TDLTGEEEQVLK---LEYDRDGKIIKYGDTPVRYEGDQITIGQMNCLNTGNKLCNVTFQI 70
Query: 540 RGGAGLVSLCRCKVKVTEEVYQVLKNYPYEFQ 571
G S RC +KV EEVY+ K Y+++
Sbjct: 71 GKGKARESRARCMLKVGEEVYEADKQTVYDYK 102
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus
subtilis} PDB: 3qh2_A*
Length = 221
Score = 30.3 bits (69), Expect = 1.9
Identities = 7/49 (14%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 516 DMTTYFLTDRKQPGTMRVEELTSLRGGAGLVSLCRCKVKVTEEVYQVLK 564
M + +TD +P + +++ + + R + K ++ ++L
Sbjct: 16 HMELHAITDDSKPVEELARIIITIQNEVDFIHI-RERSKSAADILKLLD 63
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 28.7 bits (64), Expect = 8.0
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 15/67 (22%)
Query: 249 CEEKKEMDALQHSNKRILFNLLPSHVAMHFLDNQFRSNMDLYHQSYSKVGVVFASITNYH 308
E +A K + F LP + + + R D K I +
Sbjct: 174 AGEHGLQEAE----KGVKFLTLPPVLHLQLM----RFMYDPQTDQNIK-------INDRF 218
Query: 309 EFYMELD 315
EF +L
Sbjct: 219 EFPEQLP 225
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA
complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP:
a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A*
1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A*
1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A*
1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Length = 335
Score = 28.3 bits (62), Expect = 8.2
Identities = 5/57 (8%), Positives = 18/57 (31%), Gaps = 11/57 (19%)
Query: 329 EIIADFDELLGEDRFRAIDKIKTVGSTYMAAVGLMPDYRILDEDETSPDRFRAIDKI 385
+A+F++ + + + + Y A ++ S + + +
Sbjct: 20 TELANFEKNVSQAIHKY--------NAYRKAASVI---AKYPHKIKSGAEAKKLPGV 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.405
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,016,469
Number of extensions: 678013
Number of successful extensions: 1106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1071
Number of HSP's successfully gapped: 51
Length of query: 722
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 621
Effective length of database: 3,881,772
Effective search space: 2410580412
Effective search space used: 2410580412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.3 bits)