BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9754
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 18/217 (8%)
Query: 69 VWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAH---T 125
V ++P ++W+ P++T R+ + VS D+IY IGG D ++ LSSVEC D A
Sbjct: 33 VEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92
Query: 126 WEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRY 185
W VAP+ + R + D I+++GG+ G + + +E YDP + W+ L ++
Sbjct: 93 WYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHT---SMERYDPNIDQWSMLG-DMQT 148
Query: 186 PRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHA 245
R A LV V + +Y +GG + N+ + Y + W VT + R
Sbjct: 149 AREGAGLV-VASGVIYCLGGYDGLNILNSVEKYD--------PHTGHWTNVTPMATKRSG 199
Query: 246 HSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282
++L+ I ++GG L SVE + +W
Sbjct: 200 AGVALLNDHIYVVGGFDGTAH--LSSVEAYNIRTDSW 234
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 14/158 (8%)
Query: 49 LAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQD 108
++GG D S S+ ++PN QW+ +M R+ V IY +GG D
Sbjct: 117 VSGGFDGSRRH-------TSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYD 169
Query: 109 CKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVEC 168
+L+SVE YDP W +V P+ R G VA +ND I++ GG+ G VE
Sbjct: 170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAH---LSSVEA 226
Query: 169 YDPRTNTWTTLATKLRYPR-YLATLVSVNNEKLYIIGG 205
Y+ RT++WTT+ T + PR Y+ +V +LY I G
Sbjct: 227 YNIRTDSWTTV-TSMTTPRCYVG--ATVLRGRLYAIAG 261
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTW 126
NSV ++P+ WT M R D IY +GG D LSSVE Y+ +W
Sbjct: 175 NSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234
Query: 127 EDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTW---TTLATK 182
V + R + + +++ GY G N + +ECYDP ++W T++ T+
Sbjct: 235 TTVTSMTTPRCYVGATVLRGRLYAIAGYDG---NSLLSSIECYDPIIDSWEVVTSMGTQ 290
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTW 126
+SV ++N WT +MT PR ++YAI G D +LLSS+ECYDP+ +W
Sbjct: 222 SSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281
Query: 127 EDVAPLKIARMGMAVAEIND 146
E V + R V + +
Sbjct: 282 EVVTSMGTQRCDAGVCVLRE 301
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 105/233 (45%), Gaps = 20/233 (8%)
Query: 51 GGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCK 110
GG + S D T S+++ +NP QW+ +M+ PR IYA+GG
Sbjct: 71 GGRNNSPDGNTD---SSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGC 127
Query: 111 TLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTG-DKMNPVTDKVECY 169
SSVE Y+P W VAP+ R+G+ VA +N ++ GG+ G +++N ECY
Sbjct: 128 IHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLN----SAECY 183
Query: 170 DPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSN 229
P N W + T + R A + ++N +Y GG D N+ + Y V
Sbjct: 184 YPERNEWRMI-TPMNTIRSGAGVCVLHN-CIYAAGGYDGQDQLNSVERYDVE-------- 233
Query: 230 EKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282
+ W FV + R A +V +I ++GG L SVEC+ D W
Sbjct: 234 TETWTFVAPMRHHRSALGITVHQGKIYVLGGYDG--HTFLDSVECYDPDSDTW 284
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 96/216 (44%), Gaps = 19/216 (8%)
Query: 71 SFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQ----DCKTLLSSVECYDPVAHTW 126
++NP+N W + ++ PR + +YA+GG+ D T S+++CY+P+ + W
Sbjct: 37 AYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 96
Query: 127 EDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYP 186
A + + R + V I+ I+ GG G + VE Y+P + W +A L
Sbjct: 97 SPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHH---SSVERYEPERDEWHLVAPMLT-- 151
Query: 187 RYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAH 246
R + V+V N LY +GG T+ N+ + Y EW+ +T + R
Sbjct: 152 RRIGVGVAVLNRLLYAVGGFDGTNRLNSAECY--------YPERNEWRMITPMNTIRSGA 203
Query: 247 SASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282
VL + I GG + L SVE + + + W
Sbjct: 204 GVCVLHNCIYAAGGYDG--QDQLNSVERYDVETETW 237
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTW 126
NS + P +W M R + IYA GG D + L+SVE YD TW
Sbjct: 178 NSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 237
Query: 127 EDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWT 177
VAP++ R + + KI++ GGY G D VECYDP ++TW+
Sbjct: 238 TFVAPMRHHRSALGITVHQGKIYVLGGYDGHTF---LDSVECYDPDSDTWS 285
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 14/183 (7%)
Query: 101 IYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDK-M 159
IY GG + LS +E Y+P +W +A L++ R G+A + ++ GG
Sbjct: 21 IYTAGGY-FRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 79
Query: 160 NPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYS 219
N + ++CY+P TN W+ A+ + PR V V + +Y +GG +
Sbjct: 80 NTDSSALDCYNPMTNQWSPCAS-MSVPRNRIG-VGVIDGHIYAVGG--------SHGCIH 129
Query: 220 VSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDR 279
S ++ + EW V ++ R +VL+ + +GG + L S EC+ +R
Sbjct: 130 HSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR--LNSAECYYPER 187
Query: 280 QAW 282
W
Sbjct: 188 NEW 190
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%)
Query: 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTW 126
NSV ++ + WT M + R KIY +GG D T L SVECYDP + TW
Sbjct: 225 NSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTW 284
Query: 127 EDVAPLKIARMGMAVA 142
+V + R G+ VA
Sbjct: 285 SEVTRMTSGRSGVGVA 300
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 105/233 (45%), Gaps = 20/233 (8%)
Query: 51 GGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCK 110
GG + S D T S+++ +NP QW+ +M+ PR IYA+GG
Sbjct: 70 GGRNNSPDGNTD---SSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGC 126
Query: 111 TLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTG-DKMNPVTDKVECY 169
SSVE Y+P W VAP+ R+G+ VA +N ++ GG+ G +++N ECY
Sbjct: 127 IHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLN----SAECY 182
Query: 170 DPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSN 229
P N W + T + R A + ++N +Y GG D N+ + Y V
Sbjct: 183 YPERNEWRMI-TPMNTIRSGAGVCVLHN-CIYAAGGYDGQDQLNSVERYDVE-------- 232
Query: 230 EKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282
+ W FV + R A +V +I ++GG L SVEC+ D W
Sbjct: 233 TETWTFVAPMRHHRSALGITVHQGKIYVLGGYDG--HTFLDSVECYDPDSDTW 283
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 96/216 (44%), Gaps = 19/216 (8%)
Query: 71 SFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQ----DCKTLLSSVECYDPVAHTW 126
++NP+N W + ++ PR + +YA+GG+ D T S+++CY+P+ + W
Sbjct: 36 AYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 95
Query: 127 EDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYP 186
A + + R + V I+ I+ GG G + VE Y+P + W +A L
Sbjct: 96 SPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHH---SSVERYEPERDEWHLVAPMLT-- 150
Query: 187 RYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAH 246
R + V+V N LY +GG T+ N+ + Y EW+ +T + R
Sbjct: 151 RRIGVGVAVLNRLLYAVGGFDGTNRLNSAECY--------YPERNEWRMITPMNTIRSGA 202
Query: 247 SASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282
VL + I GG + L SVE + + + W
Sbjct: 203 GVCVLHNCIYAAGGYDG--QDQLNSVERYDVETETW 236
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTW 126
NS + P +W M R + IYA GG D + L+SVE YD TW
Sbjct: 177 NSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 236
Query: 127 EDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTL 179
VAP++ R + + KI++ GGY G D VECYDP ++TW+ +
Sbjct: 237 TFVAPMRHHRSALGITVHQGKIYVLGGYDGHTF---LDSVECYDPDSDTWSEV 286
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 14/183 (7%)
Query: 101 IYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDK-M 159
IY GG + LS +E Y+P +W +A L++ R G+A + ++ GG
Sbjct: 20 IYTAGGY-FRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 78
Query: 160 NPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYS 219
N + ++CY+P TN W+ A+ + PR V V + +Y +GG +
Sbjct: 79 NTDSSALDCYNPMTNQWSPCAS-MSVPRNRIG-VGVIDGHIYAVGG--------SHGCIH 128
Query: 220 VSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDR 279
S ++ + EW V ++ R +VL+ + +GG + L S EC+ +R
Sbjct: 129 HSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR--LNSAECYYPER 186
Query: 280 QAW 282
W
Sbjct: 187 NEW 189
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%)
Query: 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTW 126
NSV ++ + WT M + R KIY +GG D T L SVECYDP + TW
Sbjct: 224 NSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTW 283
Query: 127 EDVAPLKIARMGMAVA 142
+V + R G+ VA
Sbjct: 284 SEVTRMTSGRSGVGVA 299
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 104/233 (44%), Gaps = 20/233 (8%)
Query: 51 GGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCK 110
GG + S D T S+++ +NP QW+ M+ PR IYA+GG
Sbjct: 77 GGRNNSPDGNTD---SSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC 133
Query: 111 TLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTG-DKMNPVTDKVECY 169
+SVE Y+P W VAP+ R+G+ VA +N ++ GG+ G +++N ECY
Sbjct: 134 IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLN----SAECY 189
Query: 170 DPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSN 229
P N W + T + R A + ++N +Y GG D N+ + Y V
Sbjct: 190 YPERNEWRMI-TAMNTIRSGAGVCVLHN-CIYAAGGYDGQDQLNSVERYDVE-------- 239
Query: 230 EKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282
+ W FV + R A +V +I ++GG L SVEC+ D W
Sbjct: 240 TETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG--HTFLDSVECYDPDTDTW 290
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTW 126
NS + P +W M R + IYA GG D + L+SVE YD TW
Sbjct: 184 NSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 243
Query: 127 EDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWT 177
VAP+K R + + +I++ GGY G D VECYDP T+TW+
Sbjct: 244 TFVAPMKHRRSALGITVHQGRIYVLGGYDGHTF---LDSVECYDPDTDTWS 291
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 14/183 (7%)
Query: 101 IYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGD-KM 159
IY GG + LS +E Y+P TW +A L++ R G+A + ++ GG
Sbjct: 27 IYTAGGY-FRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 85
Query: 160 NPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYS 219
N + ++CY+P TN W+ A + PR V V + +Y +GG+ N+ + Y
Sbjct: 86 NTDSSALDCYNPMTNQWSPCA-PMSVPRNRIG-VGVIDGHIYAVGGSHGCIHHNSVERYE 143
Query: 220 VSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDR 279
EW V ++ R +VL+ + +GG + L S EC+ +R
Sbjct: 144 --------PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR--LNSAECYYPER 193
Query: 280 QAW 282
W
Sbjct: 194 NEW 196
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%)
Query: 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTW 126
NSV ++ + WT M + R +IY +GG D T L SVECYDP TW
Sbjct: 231 NSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290
Query: 127 EDVAPLKIARMGMAVA 142
+V + R G+ VA
Sbjct: 291 SEVTRMTSGRSGVGVA 306
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 104/233 (44%), Gaps = 20/233 (8%)
Query: 51 GGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCK 110
GG + S D T S+++ +NP QW+ M+ PR IYA+GG
Sbjct: 78 GGRNNSPDGNTD---SSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC 134
Query: 111 TLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTG-DKMNPVTDKVECY 169
+SVE Y+P W VAP+ R+G+ VA +N ++ GG+ G +++N ECY
Sbjct: 135 IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLN----SAECY 190
Query: 170 DPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSN 229
P N W + T + R A + ++N +Y GG D N+ + Y V
Sbjct: 191 YPERNEWRMI-TAMNTIRSGAGVCVLHN-CIYAAGGYDGQDQLNSVERYDVE-------- 240
Query: 230 EKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282
+ W FV + R A +V +I ++GG L SVEC+ D W
Sbjct: 241 TETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG--HTFLDSVECYDPDTDTW 291
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTW 126
NS + P +W M R + IYA GG D + L+SVE YD TW
Sbjct: 185 NSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 244
Query: 127 EDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWT 177
VAP+K R + + +I++ GGY G D VECYDP T+TW+
Sbjct: 245 TFVAPMKHRRSALGITVHQGRIYVLGGYDGHTF---LDSVECYDPDTDTWS 292
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 14/183 (7%)
Query: 101 IYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGD-KM 159
IY GG + LS +E Y+P TW +A L++ R G+A + ++ GG
Sbjct: 28 IYTAGGY-FRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 86
Query: 160 NPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYS 219
N + ++CY+P TN W+ A + PR V V + +Y +GG+ N+ + Y
Sbjct: 87 NTDSSALDCYNPMTNQWSPCA-PMSVPRNRIG-VGVIDGHIYAVGGSHGCIHHNSVERYE 144
Query: 220 VSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDR 279
EW V ++ R +VL+ + +GG + L S EC+ +R
Sbjct: 145 --------PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR--LNSAECYYPER 194
Query: 280 QAW 282
W
Sbjct: 195 NEW 197
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%)
Query: 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTW 126
NSV ++ + WT M + R +IY +GG D T L SVECYDP TW
Sbjct: 232 NSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 291
Query: 127 EDVAPLKIARMGMAVA 142
+V + R G+ VA
Sbjct: 292 SEVTRMTSGRSGVGVA 307
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 98/211 (46%), Gaps = 17/211 (8%)
Query: 58 DEKTTDIVSNSVWSFNPNN--KQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKT--LL 113
DE+ D S + F +N +W P + R +F DKIY + G+D +T L
Sbjct: 68 DEENKDQPLQSYF-FQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASL 126
Query: 114 SSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRT 173
SV CYDPVA W +V L I G V N I+ GG T DK T++V Y+P+
Sbjct: 127 DSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDK--KCTNRVFIYNPKK 184
Query: 174 NTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEW 233
W LA ++ PR + V+++ K+ I GG ++ + + ++ F +W
Sbjct: 185 GDWKDLAP-MKTPRSMFG-VAIHKGKIVIAGGVTEDGLS--------ASVEAFDLKTNKW 234
Query: 234 KFVTELVVPRHAHSASVLSSQILIIGGVTTV 264
+ +TE R + S L+ + IGG +
Sbjct: 235 EVMTEFPQERSSISLVSLAGSLYAIGGFAMI 265
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 103/198 (52%), Gaps = 13/198 (6%)
Query: 62 TDIVSNSVWSFNPNNKQWTQEPNMTYPRKIF--SFVSCLDKIYAIGGQ-DCKTLLSSVEC 118
T+ +SV ++P +W++ N+ P K++ + +S IY +GG+ D K + V
Sbjct: 122 TEASLDSVLCYDPVAAKWSEVKNL--PIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFI 179
Query: 119 YDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTT 178
Y+P W+D+AP+K R VA KI IAGG T D + + VE +D +TN W
Sbjct: 180 YNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGL---SASVEAFDLKTNKWEV 236
Query: 179 LATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQ-KMYSVSDLDVFVSNEKEWKFVT 237
+ T+ R +LVS+ LY IGG + + + V+D+ + ++KEW +
Sbjct: 237 M-TEFPQERSSISLVSLAGS-LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGML 294
Query: 238 ELVVPRHAHSASVLSSQI 255
+ + R+A AS L++++
Sbjct: 295 KEI--RYASGASCLATRL 310
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 13/146 (8%)
Query: 46 INSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIG 105
I L G D D+K T N V+ +NP W M PR +F KI G
Sbjct: 161 IYCLGGKTD---DKKCT----NRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAG 213
Query: 106 GQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYT-----GDKMN 160
G L +SVE +D + WE + R +++ + ++ GG+ +
Sbjct: 214 GVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFA 273
Query: 161 PV-TDKVECYDPRTNTWTTLATKLRY 185
P + + Y+ W + ++RY
Sbjct: 274 PTEVNDIWKYEDDKKEWAGMLKEIRY 299
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 100/233 (42%), Gaps = 20/233 (8%)
Query: 51 GGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCK 110
GG + S D T S+++ +NP QW+ + PR IYA+GG
Sbjct: 77 GGRNNSPDGNTD---SSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGC 133
Query: 111 TLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTG-DKMNPVTDKVECY 169
+SVE Y+P W VAP R+G+ VA +N ++ GG+ G +++N ECY
Sbjct: 134 IHHNSVERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLN----SAECY 189
Query: 170 DPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSN 229
P N W + T R A + ++N +Y GG D N+ + Y V
Sbjct: 190 YPERNEWRXI-TAXNTIRSGAGVCVLHN-CIYAAGGYDGQDQLNSVERYDVE-------- 239
Query: 230 EKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282
+ W FV R A +V +I ++GG L SVEC+ D W
Sbjct: 240 TETWTFVAPXKHRRSALGITVHQGRIYVLGGYDG--HTFLDSVECYDPDTDTW 290
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 19/216 (8%)
Query: 71 SFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQ----DCKTLLSSVECYDPVAHTW 126
++NP+N W + ++ PR + +YA+GG+ D T S+++CY+P + W
Sbjct: 43 AYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPXTNQW 102
Query: 127 EDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYP 186
AP + R + V I+ I+ GG G + + VE Y+P + W +A L
Sbjct: 103 SPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHH---NSVERYEPERDEWHLVAPXL--T 157
Query: 187 RYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAH 246
R + V+V N LY +GG T+ N+ + Y EW+ +T R
Sbjct: 158 RRIGVGVAVLNRLLYAVGGFDGTNRLNSAECY--------YPERNEWRXITAXNTIRSGA 209
Query: 247 SASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282
VL + I GG + L SVE + + + W
Sbjct: 210 GVCVLHNCIYAAGGYDG--QDQLNSVERYDVETETW 243
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTW 126
NS + P +W R + IYA GG D + L+SVE YD TW
Sbjct: 184 NSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 243
Query: 127 EDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTL 179
VAP K R + + +I++ GGY G D VECYDP T+TW+ +
Sbjct: 244 TFVAPXKHRRSALGITVHQGRIYVLGGYDGHTF---LDSVECYDPDTDTWSEV 293
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 14/183 (7%)
Query: 101 IYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGD-KM 159
IY GG + LS +E Y+P TW +A L++ R G+A + ++ GG
Sbjct: 27 IYTAGGY-FRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 85
Query: 160 NPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYS 219
N + ++CY+P TN W+ A PR V V + +Y +GG+ N+ + Y
Sbjct: 86 NTDSSALDCYNPXTNQWSPCA-PXSVPRNRIG-VGVIDGHIYAVGGSHGCIHHNSVERYE 143
Query: 220 VSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDR 279
EW V + R +VL+ + +GG + L S EC+ +R
Sbjct: 144 --------PERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNR--LNSAECYYPER 193
Query: 280 QAW 282
W
Sbjct: 194 NEW 196
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 35/76 (46%)
Query: 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTW 126
NSV ++ + WT + R +IY +GG D T L SVECYDP TW
Sbjct: 231 NSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290
Query: 127 EDVAPLKIARMGMAVA 142
+V R G+ VA
Sbjct: 291 SEVTRXTSGRSGVGVA 306
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 16/219 (7%)
Query: 49 LAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQD 108
+AGG+ + D K D +S F+ + +W P + PR +F L+ IY +GG++
Sbjct: 50 VAGGLFYNEDNKE-DPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGRE 108
Query: 109 CK---TLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDK 165
K L SV CYD ++ W + PL G V D +++ GG D+ +K
Sbjct: 109 IKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDR--KCLNK 166
Query: 166 VECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDV 225
+ YDP+ W LA ++ R L +V++ ++ + G + T T++ ++YS++D
Sbjct: 167 MCVYDPKKFEWKELA-PMQTARSLFG-ATVHDGRIIVAAGVTDTGLTSSAEVYSITD--- 221
Query: 226 FVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTV 264
+W R + S L + IGG T+
Sbjct: 222 -----NKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATL 255
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 18/210 (8%)
Query: 51 GGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCK 110
GG + S +T D S++P QWT NM R +YA+GG D
Sbjct: 68 GGFNGSLRVRTVD-------SYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS 120
Query: 111 TLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYD 170
T LSSVE Y+ ++ W VAP+ R + V + ++ GGY ++ VECY+
Sbjct: 121 TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLS-TVECYN 179
Query: 171 PRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNE 230
TN WT +A R V V N LY +GG D +K ++V+
Sbjct: 180 ATTNEWTYIAEM--STRRSGAGVGVLNNLLYAVGG---HDGPLVRK-----SVEVYDPTT 229
Query: 231 KEWKFVTELVVPRHAHSASVLSSQILIIGG 260
W+ V ++ + R ++ + ++GG
Sbjct: 230 NAWRQVADMNMCRRNAGVCAVNGLLYVVGG 259
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 13/215 (6%)
Query: 68 SVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWE 127
SV ++ ++W Q + R V ++A+GG + + +V+ YDPV W
Sbjct: 31 SVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWT 90
Query: 128 DVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPR 187
VA ++ R + A +N ++ GG+ G VE Y+ ++N W +A R
Sbjct: 91 SVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG---LSSVEAYNIKSNEWFHVAPM--NTR 145
Query: 188 YLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHS 247
+ V V LY +GG D + Q +S ++ + + EW ++ E+ R
Sbjct: 146 RSSVGVGVVGGLLYAVGG---YDVASRQ---CLSTVECYNATTNEWTYIAEMSTRRSGAG 199
Query: 248 ASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282
VL++ + +GG R KSVE + AW
Sbjct: 200 VGVLNNLLYAVGGHDGPLVR--KSVEVYDPTTNAW 232
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 11/151 (7%)
Query: 51 GGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKI-YAIGGQDC 109
GG D +S + + +V +N +WT M+ R+ + V L+ + YA+GG D
Sbjct: 162 GGYDVASRQCLS-----TVECYNATTNEWTYIAEMS-TRRSGAGVGVLNNLLYAVGGHDG 215
Query: 110 KTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECY 169
+ SVE YDP + W VA + + R V +N +++ G GD + VE Y
Sbjct: 216 PLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVG---GDDGSCNLASVEYY 272
Query: 170 DPRTNTWTTLATKLRYPRYLATLVSVNNEKL 200
+P T+ WT +++ + R A V+V +++L
Sbjct: 273 NPTTDKWTVVSSCMSTGRSYAG-VTVIDKRL 302
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 16/180 (8%)
Query: 104 IGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVT 163
+GGQ K + SVECYD W VA L R + + ++ GG+ G
Sbjct: 21 VGGQAPKAI-RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLR---V 76
Query: 164 DKVECYDPRTNTWTTLATKLRYPRYLATL-VSVNNEKLYIIGGASQTDATNTQKMYSVSD 222
V+ YDP + WT++A +R R +TL +V N LY +GG + ++ + Y++
Sbjct: 77 RTVDSYDPVKDQWTSVA-NMRDRR--STLGAAVLNGLLYAVGGFDGSTGLSSVEAYNI-- 131
Query: 223 LDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282
EW V + R + V+ + +GG ++ L +VEC+ W
Sbjct: 132 ------KSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEW 185
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 12/195 (6%)
Query: 72 FNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDC-KTLLSSVECYDPVAHTWEDVA 130
+N W + PR + + KIY GG + + L ECYD +W
Sbjct: 75 YNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134
Query: 131 PLKIARMGMAVAEINDKIWIAGGYTGDKMNP-VTDKVECYDPRTNTWTTLATKLRYPRYL 189
+ R + E N I++ GG G+ ++ V + E YDP T TWT L + R
Sbjct: 135 SMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE-ARKN 193
Query: 190 ATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSAS 249
LV V +K++ +GG + + + Y + EWK V+ + +
Sbjct: 194 HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDI--------KLNEWKMVSPMPWKGVTVKCA 244
Query: 250 VLSSQILIIGGVTTV 264
+ S + ++ G V
Sbjct: 245 AVGSIVYVLAGFQGV 259
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 21/221 (9%)
Query: 40 QRYDVKINSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLD 99
+++D +I +L GG P S FNP + WT R+ + V +
Sbjct: 9 KKHDYRI-ALFGGSQPQSCR-----------YFNPKDYSWTDIRCPFEKRRDAACVFWDN 56
Query: 100 KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKM 159
+Y +GG + ++CY+ V +W R +A KI+ +GG +
Sbjct: 57 VVYILGGSQLFPI-KRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGG--SEVG 113
Query: 160 NPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYS 219
N ECYD RT +W T + L R +V N +Y+ GG+ + +
Sbjct: 114 NSALYLFECYDTRTESWHTKPSMLT-QRCSHGMVEANG-LIYVCGGSLGNNVSGR----V 167
Query: 220 VSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGG 260
++ +V+ + W + ++ R H + +I +GG
Sbjct: 168 LNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGG 208
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Query: 44 VKINSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYA 103
V+ N L S + V NS ++P + WT+ M RK V DKI+A
Sbjct: 146 VEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFA 205
Query: 104 IGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTG-DKMNPV 162
+GGQ+ L +VE YD + W+ V+P+ + + A + +++ G+ G ++ +
Sbjct: 206 VGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHI 265
Query: 163 TDKVECYDPRTNTWTTLATKLRYP 186
+ Y+ T+ W + +P
Sbjct: 266 LE----YNTETDKWVANSKVRAFP 285
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 142 AEINDKIWIAGGY--TGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVS-VNNE 198
A I+ +++ GG + + V + V Y+P+TN+W L + P A V+ V+N
Sbjct: 62 AFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLXS--HAPXGXAGHVTFVHNG 119
Query: 199 KLYIIGGASQT 209
K Y+ GG +Q
Sbjct: 120 KAYVTGGVNQN 130
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 191 TLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSA-S 249
T +S NN+ L +IGG +SD +F +EW + L R HSA S
Sbjct: 446 TTISRNNQ-LLLIGGRKAPHQ-------GLSDNWIFDMKTREWSMIKSLSHTRFRHSACS 497
Query: 250 VLSSQILIIGGVT 262
+ +LI+GGVT
Sbjct: 498 LPDGNVLILGGVT 510
>pdb|2ASH|A Chain A, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec
2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga
Maritima At 1.90 A Resolution
pdb|2ASH|B Chain B, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec
2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga
Maritima At 1.90 A Resolution
pdb|2ASH|C Chain C, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec
2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga
Maritima At 1.90 A Resolution
pdb|2ASH|D Chain D, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec
2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga
Maritima At 1.90 A Resolution
Length = 381
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 102 YAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNP 161
Y +GG + +L E D ++ V P +IAR G A+ N K+ + Y + P
Sbjct: 251 YFMGGGSPELIL---ELVDRGVDMFDSVFPTRIARHGTALT-WNGKLNLKASYNKRSLEP 306
Query: 162 VTDKVECY 169
V ++ CY
Sbjct: 307 VDERCGCY 314
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 100 KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDK--IWIAGGYTGD 157
+I GG D K YD + +W +++AR + A ++D I G ++G
Sbjct: 238 QIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGG 293
Query: 158 KMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLY 201
E Y P + TWT+L P +++ + + LY
Sbjct: 294 VFE---KNGEVYSPSSKTWTSLPNAKVNP-----MLTADKQGLY 329
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 100 KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDK--IWIAGGYTGD 157
+I GG D K YD + +W +++AR + A ++D I G ++G
Sbjct: 260 QIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGG 315
Query: 158 KMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLY 201
E Y P + TWT+L P +++ + + LY
Sbjct: 316 VFE---KNGEVYSPSSKTWTSLPNAKVNP-----MLTADKQGLY 351
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 100 KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDK--IWIAGGYTGD 157
+I GG D K YD + +W +++AR + A ++D I G ++G
Sbjct: 238 QIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSHSGG 293
Query: 158 KMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLY 201
E Y P + TWT+L P +++ + + LY
Sbjct: 294 VFE---KNGEVYSPSSKTWTSLPNAKVNP-----MLTADKQGLY 329
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 100 KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEIND-KIWIAGGYTGDK 158
+I GG D K YD + +W +++AR + A ++D +++ GG
Sbjct: 238 QIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSGSGG 293
Query: 159 MNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLY 201
+ E Y P + TWT+L P +++ + + LY
Sbjct: 294 V--FEKNGEVYSPSSKTWTSLPNAKVNP-----MLTADKQGLY 329
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 100 KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDK--IWIAGGYTGD 157
+I GG D K YD + +W +++AR + A ++D I G ++G
Sbjct: 255 QIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGG 310
Query: 158 KMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLY 201
E Y P + TWT+L P +++ + + LY
Sbjct: 311 VFE---KNGEVYSPSSKTWTSLPNAKVNP-----MLTADKQGLY 346
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 100 KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDK--IWIAGGYTGD 157
+I GG D K YD + +W +++AR + A ++D I G ++G
Sbjct: 238 QIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGG 293
Query: 158 KMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLY 201
E Y P + TWT+L P +++ + + LY
Sbjct: 294 VFE---KNGEVYSPSSKTWTSLPNAKVNP-----MLTADKQGLY 329
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 100 KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDK--IWIAGGYTGD 157
+I GG D K YD + +W +++AR + A ++D I G ++G
Sbjct: 238 QIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGG 293
Query: 158 KMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLY 201
E Y P + TWT+L P +++ + + LY
Sbjct: 294 VFE---KNGEVYSPSSKTWTSLPNAKVNP-----MLTADKQGLY 329
>pdb|3ZZI|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|4AB7|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
Length = 464
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 128 DVAPLKIARM--GMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLR 184
DVA ++AR+ + + +N+K I G TG+K++ + E D +W TKL+
Sbjct: 202 DVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLK 260
>pdb|3ZZF|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZG|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZH|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
Length = 307
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 128 DVAPLKIARM--GMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLR 184
DVA ++AR+ + + +N+K I G TG+K++ + E D +W TKL+
Sbjct: 202 DVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYDDLMKQSWVKYGTKLK 260
>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3OE5|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Pyridylsulfanyl-Containing Inhibitor -
Humanized Form
pdb|3OZR|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Bisubstrate Inhibitor, No Substituent In
The Adenine Site - Humanized Form
pdb|3OZS|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Trifluoromethyl-Imidazolyl-Containing
Inhibitor - Humanized Form
pdb|3OZT|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, 4- Oxo-Pyridinyl-Containing Inhibitor -
Humanized Form
pdb|3NWE|A Chain A, Rat Comt In Complex With A Methylated Desoxyribose
Bisubstrate- Containing Inhibitor Avoids Hydroxyl Group
pdb|3R6T|A Chain A, Rat Catechol O-Methyltransferase In Complex With The
Bisubstrate Inhibitor
4'-Fluoro-4,5-Dihydroxy-Biphenyl-3-Carboxylic Acid
{(E)-3-
[(2s,4r,
5r)-4-Hydroxy-5-(6-Methyl-Purin-9-Yl)-Tetrahydro-Furan-
2-Yl]- Allyl}-Amide
pdb|3U81|A Chain A, Crystal Structure Of A Sah-Bound Semi-Holo Form Of Rat
Catechol-O- Methyltransferase
Length = 221
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 197 NEKLYIIGGASQTDATNTQKMYSVSDLD-VFVSNEKEWKFVTELVVPRHA--HSASVLSS 253
+K+ I+ GASQ +K Y V LD VF+ + K+ L++ + +VL +
Sbjct: 109 QDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA 168
Query: 254 QILIIGGVT--TVYKRTLKSVECWCFDRQ-AWIKGVSGLPATI 293
+I+ G Y R S EC + ++K V GL I
Sbjct: 169 DNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAI 211
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1H1D|A Chain A, Catechol O-Methyltransferase
pdb|2CL5|A Chain A, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|2CL5|B Chain B, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|1VID|A Chain A, Catechol O-Methyltransferase
pdb|3HVH|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Methyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVI|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Ethyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|B Chain B, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVK|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3NW9|A Chain A, Rat Comt In Complex With A Methylpurin-Containing
Bisubstrate Inhibitor
pdb|3NWB|A Chain A, Rat Comt In Complex With A Fluorinated
Desoxyribose-Containing Bisubstrate Inhibitor Avoids
Hydroxyl Group
pdb|3S68|A Chain A, Rat Comt In Complex With Sam And Tolcapone At 1.85a,
P3221, Rfree22.0
Length = 221
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 197 NEKLYIIGGASQTDATNTQKMYSVSDLD-VFVSNEKEWKFVTELVVPRHA--HSASVLSS 253
+K+ I+ GASQ +K Y V LD VF+ + K+ L++ + +VL +
Sbjct: 109 QDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA 168
Query: 254 QILIIGGVT--TVYKRTLKSVECWCFDRQ-AWIKGVSGLPATI 293
+I+ G Y R S EC + ++K V GL I
Sbjct: 169 DNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAI 211
>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O-
Methyltransferase
pdb|2ZVJ|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With Coumarine-Based Inhibitor
pdb|2ZTH|A Chain A, Crystal Structure Of Holo Form Of Rat Catechol-O-
Methyltransferase
pdb|3A7D|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With New Bi-Substrate Type Inhibitor
Length = 223
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 197 NEKLYIIGGASQTDATNTQKMYSVSDLD-VFVSNEKEWKFVTELVVPRHA--HSASVLSS 253
+K+ I+ GASQ +K Y V LD VF+ + K+ L++ + +VL +
Sbjct: 111 QDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA 170
Query: 254 QILIIGGVT--TVYKRTLKSVECWCFDRQ-AWIKGVSGLPATI 293
+I+ G Y R S EC + ++K V GL I
Sbjct: 171 DNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAI 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,602,827
Number of Sequences: 62578
Number of extensions: 380675
Number of successful extensions: 983
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 845
Number of HSP's gapped (non-prelim): 68
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)