Query psy9754
Match_columns 306
No_of_seqs 150 out of 1667
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 18:43:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441|consensus 100.0 1.2E-48 2.5E-53 346.2 28.9 276 6-303 284-570 (571)
2 PHA02713 hypothetical protein; 100.0 2E-45 4.4E-50 326.9 26.9 258 8-285 259-540 (557)
3 KOG4441|consensus 100.0 6.7E-43 1.5E-47 309.5 26.7 238 45-303 285-523 (571)
4 PLN02153 epithiospecifier prot 100.0 1.6E-41 3.5E-46 287.5 30.4 268 29-303 7-313 (341)
5 PLN02193 nitrile-specifier pro 100.0 3.1E-41 6.6E-46 295.6 32.7 276 5-299 119-436 (470)
6 PHA03098 kelch-like protein; P 100.0 2.7E-40 5.8E-45 296.5 29.4 269 8-295 252-527 (534)
7 PLN02153 epithiospecifier prot 100.0 1.5E-39 3.3E-44 275.4 29.4 266 4-278 30-339 (341)
8 PHA02713 hypothetical protein; 100.0 6.8E-40 1.5E-44 291.6 28.0 231 66-303 271-513 (557)
9 TIGR03548 mutarot_permut cycli 100.0 8.3E-40 1.8E-44 275.2 26.8 251 2-264 9-315 (323)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 7.9E-39 1.7E-43 272.0 28.4 265 3-276 14-344 (346)
11 PRK14131 N-acetylneuraminic ac 100.0 1.6E-38 3.5E-43 271.9 28.6 272 4-284 36-374 (376)
12 PLN02193 nitrile-specifier pro 100.0 2.2E-38 4.8E-43 277.6 30.1 264 3-279 172-469 (470)
13 TIGR03547 muta_rot_YjhT mutatr 100.0 5.5E-38 1.2E-42 266.9 27.2 248 34-302 1-321 (346)
14 PHA02790 Kelch-like protein; P 100.0 4.3E-38 9.3E-43 276.5 26.4 203 47-284 274-476 (480)
15 TIGR03548 mutarot_permut cycli 100.0 2.1E-37 4.6E-42 260.5 27.7 242 47-303 16-304 (323)
16 PRK14131 N-acetylneuraminic ac 100.0 1E-36 2.2E-41 260.8 26.5 253 30-303 18-344 (376)
17 PHA03098 kelch-like protein; P 100.0 2.5E-36 5.3E-41 270.9 25.0 223 3-242 291-524 (534)
18 PHA02790 Kelch-like protein; P 100.0 2.3E-35 5E-40 259.2 23.9 200 5-237 270-478 (480)
19 KOG4693|consensus 100.0 2E-35 4.3E-40 225.6 19.1 246 5-263 22-313 (392)
20 KOG4693|consensus 100.0 5.5E-35 1.2E-39 223.2 20.1 268 30-302 3-302 (392)
21 KOG0379|consensus 100.0 1.6E-30 3.5E-35 227.4 23.9 254 34-304 54-330 (482)
22 KOG1230|consensus 100.0 6.8E-31 1.5E-35 212.0 17.7 247 36-285 62-347 (521)
23 KOG4152|consensus 100.0 2.5E-28 5.5E-33 202.3 16.2 257 29-302 17-332 (830)
24 KOG4152|consensus 100.0 2.7E-28 5.8E-33 202.1 15.5 250 4-264 40-344 (830)
25 KOG0379|consensus 100.0 5.3E-27 1.1E-31 205.4 22.9 210 82-302 54-275 (482)
26 KOG1230|consensus 100.0 1.8E-27 3.9E-32 192.3 16.5 229 7-236 79-347 (521)
27 COG3055 Uncharacterized protei 99.9 1E-20 2.2E-25 151.3 19.7 267 3-278 43-374 (381)
28 COG3055 Uncharacterized protei 99.8 1.6E-18 3.4E-23 138.8 17.5 250 32-303 28-350 (381)
29 KOG2437|consensus 99.6 6.3E-17 1.4E-21 134.7 0.6 253 5-263 271-594 (723)
30 KOG2437|consensus 99.5 3.3E-15 7.1E-20 124.6 3.9 241 29-284 239-540 (723)
31 PF13964 Kelch_6: Kelch motif 99.4 7.6E-13 1.6E-17 78.7 6.2 49 88-136 1-50 (50)
32 PF13964 Kelch_6: Kelch motif 99.3 4.5E-12 9.7E-17 75.3 5.3 50 242-293 1-50 (50)
33 PF13415 Kelch_3: Galactose ox 99.2 1.6E-11 3.5E-16 72.4 5.4 49 252-301 1-49 (49)
34 PF01344 Kelch_1: Kelch motif; 99.2 2.7E-11 5.9E-16 71.0 4.8 46 88-133 1-47 (47)
35 PF07250 Glyoxal_oxid_N: Glyox 99.1 1.6E-08 3.5E-13 80.0 16.6 162 116-303 48-226 (243)
36 PF07646 Kelch_2: Kelch motif; 99.1 7.7E-10 1.7E-14 65.2 6.2 46 88-133 1-49 (49)
37 PF13415 Kelch_3: Galactose ox 99.0 5.9E-10 1.3E-14 65.7 5.6 47 98-144 1-49 (49)
38 PF01344 Kelch_1: Kelch motif; 99.0 7.5E-10 1.6E-14 64.8 5.0 47 135-184 1-47 (47)
39 PF13418 Kelch_4: Galactose ox 99.0 4.7E-10 1E-14 66.3 3.9 46 88-133 1-48 (49)
40 PF07646 Kelch_2: Kelch motif; 99.0 1.7E-09 3.7E-14 63.7 5.3 48 242-290 1-49 (49)
41 PF13418 Kelch_4: Galactose ox 98.9 1.1E-09 2.4E-14 64.6 4.0 48 242-291 1-49 (49)
42 smart00612 Kelch Kelch domain. 98.9 2.1E-09 4.6E-14 62.9 4.8 47 100-146 1-47 (47)
43 smart00612 Kelch Kelch domain. 98.9 4.1E-09 8.8E-14 61.7 5.4 46 47-99 2-47 (47)
44 TIGR01640 F_box_assoc_1 F-box 98.8 4.1E-06 8.9E-11 67.2 21.0 195 67-280 14-230 (230)
45 PLN02772 guanylate kinase 98.7 1.7E-07 3.7E-12 78.9 10.3 85 134-230 23-109 (398)
46 PF13854 Kelch_5: Kelch motif 98.6 1.1E-07 2.4E-12 53.7 5.3 40 85-124 1-42 (42)
47 PF07250 Glyoxal_oxid_N: Glyox 98.6 2.4E-06 5.2E-11 67.8 13.7 154 65-242 44-211 (243)
48 PF13854 Kelch_5: Kelch motif 98.6 1.3E-07 2.8E-12 53.5 4.8 42 239-280 1-42 (42)
49 PLN02772 guanylate kinase 98.5 6.7E-07 1.5E-11 75.4 10.1 84 184-279 22-109 (398)
50 TIGR01640 F_box_assoc_1 F-box 98.3 8.7E-05 1.9E-09 59.5 17.2 168 96-285 3-184 (230)
51 PF03089 RAG2: Recombination a 98.3 0.00091 2E-08 53.3 22.1 172 31-210 24-232 (337)
52 PF03089 RAG2: Recombination a 98.2 0.00024 5.3E-09 56.4 16.8 187 100-296 40-269 (337)
53 PRK11138 outer membrane biogen 97.9 0.013 2.8E-07 51.1 25.3 173 66-284 169-361 (394)
54 PF13360 PQQ_2: PQQ-like domai 97.7 0.015 3.2E-07 46.7 22.2 171 66-281 45-233 (238)
55 PF07893 DUF1668: Protein of u 97.7 0.019 4.1E-07 48.9 20.4 123 97-239 75-217 (342)
56 PRK11138 outer membrane biogen 97.6 0.043 9.2E-07 47.9 24.7 153 67-259 215-383 (394)
57 PF08450 SGL: SMP-30/Gluconola 97.6 0.028 6E-07 45.5 20.5 184 66-284 21-219 (246)
58 TIGR03300 assembly_YfgL outer 97.5 0.049 1.1E-06 47.2 24.1 172 66-284 114-305 (377)
59 PF13360 PQQ_2: PQQ-like domai 97.5 0.034 7.4E-07 44.6 22.4 175 67-284 3-199 (238)
60 PF07893 DUF1668: Protein of u 97.5 0.007 1.5E-07 51.5 14.4 125 144-288 75-216 (342)
61 KOG2055|consensus 97.4 0.031 6.7E-07 47.7 17.5 126 66-206 279-407 (514)
62 TIGR03300 assembly_YfgL outer 97.4 0.078 1.7E-06 45.9 22.5 156 67-260 200-369 (377)
63 PF12768 Rax2: Cortical protei 97.4 0.025 5.4E-07 46.4 16.1 122 102-238 2-130 (281)
64 KOG2055|consensus 97.2 0.035 7.5E-07 47.5 15.6 175 47-262 227-408 (514)
65 PF12768 Rax2: Cortical protei 97.2 0.022 4.7E-07 46.8 14.2 108 163-285 15-128 (281)
66 PF02191 OLF: Olfactomedin-lik 97.2 0.053 1.1E-06 43.8 16.1 184 98-305 30-230 (250)
67 smart00284 OLF Olfactomedin-li 96.9 0.16 3.5E-06 40.8 16.7 197 75-304 19-234 (255)
68 TIGR03866 PQQ_ABC_repeats PQQ- 96.9 0.19 4.2E-06 41.4 19.1 176 66-282 10-191 (300)
69 smart00284 OLF Olfactomedin-li 96.9 0.18 3.8E-06 40.6 17.4 185 45-258 35-241 (255)
70 PF08450 SGL: SMP-30/Gluconola 96.8 0.2 4.3E-06 40.5 17.7 166 68-259 61-244 (246)
71 PF02191 OLF: Olfactomedin-lik 96.6 0.28 6.1E-06 39.7 17.0 179 47-259 33-237 (250)
72 PF05096 Glu_cyclase_2: Glutam 96.6 0.14 3E-06 41.4 13.6 109 94-231 50-159 (264)
73 KOG0310|consensus 96.6 0.1 2.2E-06 45.0 13.3 209 30-280 13-227 (487)
74 PF05096 Glu_cyclase_2: Glutam 96.4 0.13 2.8E-06 41.5 12.4 96 144-262 54-149 (264)
75 PF03178 CPSF_A: CPSF A subuni 96.4 0.49 1.1E-05 40.0 17.4 140 99-262 42-193 (321)
76 PF03178 CPSF_A: CPSF A subuni 96.4 0.29 6.2E-06 41.4 15.4 133 146-302 42-182 (321)
77 PF14870 PSII_BNR: Photosynthe 96.1 0.7 1.5E-05 38.5 17.1 194 69-302 83-285 (302)
78 PRK00178 tolB translocation pr 96.0 0.99 2.1E-05 39.9 20.3 182 67-279 223-407 (430)
79 KOG0310|consensus 96.0 0.9 2E-05 39.4 16.4 146 96-279 120-269 (487)
80 PRK04922 tolB translocation pr 96.0 1.1 2.4E-05 39.7 20.0 184 67-281 228-414 (433)
81 cd00094 HX Hemopexin-like repe 95.8 0.63 1.4E-05 36.2 15.8 145 94-281 12-178 (194)
82 PF10282 Lactonase: Lactonase, 95.7 1.1 2.4E-05 38.3 20.6 189 68-284 16-230 (345)
83 cd00200 WD40 WD40 domain, foun 95.4 1.2 2.5E-05 35.9 18.7 146 98-282 62-211 (289)
84 PRK04792 tolB translocation pr 95.3 2 4.2E-05 38.3 20.2 145 114-284 242-388 (448)
85 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.3 2.3 4.9E-05 38.8 18.0 119 92-234 63-196 (527)
86 PRK05137 tolB translocation pr 95.2 2.2 4.7E-05 37.9 20.0 191 67-284 226-418 (435)
87 PRK11028 6-phosphogluconolacto 95.1 1.8 3.9E-05 36.7 23.2 94 67-173 57-157 (330)
88 TIGR02800 propeller_TolB tol-p 94.9 2.4 5.3E-05 37.1 20.0 183 67-279 214-398 (417)
89 PF12217 End_beta_propel: Cata 94.9 1.6 3.5E-05 35.0 13.8 136 66-206 101-258 (367)
90 PRK04792 tolB translocation pr 94.9 2.7 5.8E-05 37.5 24.0 187 66-284 241-430 (448)
91 PTZ00421 coronin; Provisional 94.9 2.9 6.2E-05 37.7 21.5 153 99-284 138-296 (493)
92 cd00216 PQQ_DH Dehydrogenases 94.8 2.9 6.3E-05 37.7 22.7 62 66-128 119-191 (488)
93 KOG0316|consensus 94.6 1.8 3.9E-05 34.3 14.3 148 98-282 28-177 (307)
94 cd00200 WD40 WD40 domain, foun 94.5 2 4.3E-05 34.5 21.9 174 67-281 73-252 (289)
95 COG4257 Vgb Streptogramin lyas 94.5 1.7 3.6E-05 35.4 12.2 119 92-237 192-313 (353)
96 PRK13684 Ycf48-like protein; P 94.5 2.7 5.8E-05 35.8 19.3 163 68-261 153-322 (334)
97 TIGR03866 PQQ_ABC_repeats PQQ- 94.2 2.6 5.6E-05 34.6 23.6 135 67-233 53-191 (300)
98 PRK05137 tolB translocation pr 94.2 3.8 8.1E-05 36.4 19.9 146 114-284 226-372 (435)
99 PF14870 PSII_BNR: Photosynthe 94.0 3.2 7E-05 34.7 17.9 172 75-284 4-180 (302)
100 PRK04922 tolB translocation pr 93.9 4.3 9.4E-05 36.0 19.9 145 114-285 228-375 (433)
101 PRK04043 tolB translocation pr 93.9 4.2 9.2E-05 35.9 19.6 193 67-284 213-406 (419)
102 KOG0646|consensus 93.8 4.1 9E-05 35.4 14.3 27 251-284 287-313 (476)
103 KOG0316|consensus 93.8 2.7 5.9E-05 33.3 16.6 178 66-281 80-260 (307)
104 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.6 5.6 0.00012 36.3 21.7 103 67-178 79-197 (527)
105 KOG3545|consensus 93.4 3.4 7.3E-05 33.0 12.1 169 67-259 42-236 (249)
106 PLN00181 protein SPA1-RELATED; 93.3 8.4 0.00018 37.2 18.9 173 67-279 555-739 (793)
107 PRK00178 tolB translocation pr 93.1 5.8 0.00013 35.1 21.5 145 114-285 223-370 (430)
108 KOG0291|consensus 93.0 7.6 0.00016 36.2 19.1 147 98-279 361-509 (893)
109 TIGR02800 propeller_TolB tol-p 93.0 5.9 0.00013 34.8 20.0 144 114-284 214-360 (417)
110 PRK03629 tolB translocation pr 92.7 6.8 0.00015 34.7 24.1 185 66-281 222-409 (429)
111 PRK13684 Ycf48-like protein; P 92.5 6.1 0.00013 33.7 19.2 171 76-284 34-208 (334)
112 PF08268 FBA_3: F-box associat 92.1 3.3 7.1E-05 29.6 11.6 81 96-179 3-87 (129)
113 cd00216 PQQ_DH Dehydrogenases 92.0 9.2 0.0002 34.6 21.8 106 67-179 71-192 (488)
114 PLN02919 haloacid dehalogenase 91.9 15 0.00032 36.8 18.0 151 98-281 694-891 (1057)
115 PRK11028 6-phosphogluconolacto 91.8 7.3 0.00016 33.0 24.6 71 221-299 250-326 (330)
116 KOG2321|consensus 91.7 5.4 0.00012 35.9 12.1 97 163-281 154-261 (703)
117 PF02897 Peptidase_S9_N: Proly 91.6 8.9 0.00019 33.7 22.7 193 66-284 201-410 (414)
118 PLN00033 photosystem II stabil 91.6 8.7 0.00019 33.6 19.8 133 98-260 249-389 (398)
119 PRK03629 tolB translocation pr 91.5 9.5 0.00021 33.8 21.5 147 114-285 223-370 (429)
120 PRK04043 tolB translocation pr 91.2 10 0.00022 33.5 16.1 148 114-285 213-364 (419)
121 PRK02889 tolB translocation pr 90.9 11 0.00024 33.4 20.6 143 114-284 220-366 (427)
122 COG4946 Uncharacterized protei 90.6 12 0.00025 33.1 15.2 167 113-293 106-310 (668)
123 KOG0266|consensus 90.3 13 0.00028 33.3 18.8 179 67-281 225-412 (456)
124 PF08268 FBA_3: F-box associat 90.0 5.5 0.00012 28.5 9.3 84 142-237 2-88 (129)
125 KOG1036|consensus 89.8 10 0.00022 31.3 12.4 130 116-281 37-166 (323)
126 COG1520 FOG: WD40-like repeat 89.6 13 0.00028 32.2 18.1 140 67-235 78-225 (370)
127 KOG3545|consensus 89.5 9.6 0.00021 30.6 15.4 186 68-292 11-214 (249)
128 PF10282 Lactonase: Lactonase, 89.1 13 0.00029 31.7 22.5 217 21-277 15-274 (345)
129 PTZ00421 coronin; Provisional 89.0 17 0.00037 32.9 17.2 52 67-125 148-201 (493)
130 KOG0315|consensus 88.4 12 0.00025 30.1 16.0 189 44-282 9-201 (311)
131 cd00094 HX Hemopexin-like repe 88.2 10 0.00023 29.3 15.2 102 99-232 63-178 (194)
132 COG4257 Vgb Streptogramin lyas 87.7 14 0.00031 30.3 15.4 182 68-285 125-312 (353)
133 PLN00033 photosystem II stabil 87.2 20 0.00043 31.5 19.7 170 77-285 166-363 (398)
134 KOG2321|consensus 87.0 6.7 0.00014 35.3 9.2 97 65-175 153-261 (703)
135 TIGR02658 TTQ_MADH_Hv methylam 86.8 19 0.00042 30.9 24.3 115 7-128 13-142 (352)
136 KOG0289|consensus 86.4 21 0.00046 31.1 15.0 143 90-262 349-496 (506)
137 PF02239 Cytochrom_D1: Cytochr 85.4 24 0.00051 30.6 14.9 142 67-234 58-207 (369)
138 KOG0296|consensus 84.5 24 0.00052 30.0 16.0 144 98-281 75-223 (399)
139 PF02239 Cytochrom_D1: Cytochr 84.3 27 0.00058 30.3 15.3 180 66-281 15-205 (369)
140 KOG1036|consensus 83.7 24 0.00051 29.3 14.5 131 68-232 36-166 (323)
141 PRK02889 tolB translocation pr 83.4 32 0.00069 30.5 23.6 180 67-278 220-403 (427)
142 PF09910 DUF2139: Uncharacteri 83.0 26 0.00055 29.1 16.5 158 80-258 26-219 (339)
143 PRK10115 protease 2; Provision 82.8 45 0.00097 31.8 18.8 192 66-285 198-401 (686)
144 KOG0315|consensus 82.4 24 0.00053 28.4 17.8 179 66-280 60-247 (311)
145 PTZ00420 coronin; Provisional 82.4 41 0.0009 31.1 18.2 147 100-281 139-296 (568)
146 KOG0649|consensus 81.2 27 0.00058 28.1 13.8 149 78-259 100-263 (325)
147 PF09910 DUF2139: Uncharacteri 80.9 31 0.00067 28.7 14.0 126 66-203 77-219 (339)
148 KOG1332|consensus 80.5 28 0.00062 28.0 14.1 48 229-284 243-293 (299)
149 PF06433 Me-amine-dh_H: Methyl 80.2 36 0.00078 29.0 17.3 75 197-284 249-326 (342)
150 PLN00181 protein SPA1-RELATED; 78.6 67 0.0015 31.2 21.2 22 98-124 629-650 (793)
151 PF14583 Pectate_lyase22: Olig 78.5 44 0.00096 29.0 14.0 182 67-262 102-303 (386)
152 KOG0278|consensus 78.5 34 0.00073 27.7 12.3 84 114-207 205-288 (334)
153 TIGR03074 PQQ_membr_DH membran 78.5 66 0.0014 31.0 18.0 34 92-131 188-223 (764)
154 KOG0286|consensus 77.8 39 0.00084 28.0 15.7 123 68-207 78-208 (343)
155 KOG0291|consensus 77.8 64 0.0014 30.5 19.8 151 99-284 319-472 (893)
156 COG1520 FOG: WD40-like repeat 75.2 54 0.0012 28.3 18.9 153 94-284 64-225 (370)
157 PF13088 BNR_2: BNR repeat-lik 74.9 44 0.00096 27.2 11.0 146 97-257 117-275 (275)
158 KOG4649|consensus 74.9 45 0.00097 27.2 10.1 91 163-281 32-126 (354)
159 PRK01742 tolB translocation pr 73.9 64 0.0014 28.6 22.8 161 67-262 228-392 (429)
160 PF02897 Peptidase_S9_N: Proly 73.6 63 0.0014 28.4 16.1 148 67-237 252-412 (414)
161 KOG1898|consensus 73.6 99 0.0022 30.6 15.5 171 67-260 853-1037(1205)
162 PF13088 BNR_2: BNR repeat-lik 73.4 49 0.0011 27.0 10.3 131 66-202 133-275 (275)
163 KOG0318|consensus 73.1 54 0.0012 29.5 9.9 105 145-278 454-560 (603)
164 PTZ00420 coronin; Provisional 72.9 80 0.0017 29.3 16.8 96 67-173 148-249 (568)
165 KOG0263|consensus 72.2 55 0.0012 30.7 10.2 107 142-279 542-650 (707)
166 KOG0279|consensus 72.0 54 0.0012 27.0 16.0 147 98-282 74-226 (315)
167 KOG0289|consensus 72.0 69 0.0015 28.1 11.9 119 139-290 351-473 (506)
168 KOG0640|consensus 70.6 50 0.0011 27.6 8.6 98 163-282 237-339 (430)
169 PF06433 Me-amine-dh_H: Methyl 69.9 70 0.0015 27.3 15.4 60 65-128 65-132 (342)
170 COG4946 Uncharacterized protei 69.9 82 0.0018 28.1 19.6 217 16-284 201-437 (668)
171 PLN02919 haloacid dehalogenase 69.1 1.4E+02 0.0029 30.3 21.3 154 98-284 635-839 (1057)
172 KOG0299|consensus 68.9 83 0.0018 27.8 10.7 147 95-281 210-359 (479)
173 KOG2111|consensus 68.2 72 0.0016 26.8 14.3 137 98-263 58-203 (346)
174 COG4447 Uncharacterized protei 67.9 58 0.0012 26.9 8.4 99 92-205 48-146 (339)
175 KOG0265|consensus 67.7 71 0.0015 26.6 10.8 64 98-178 58-126 (338)
176 TIGR02658 TTQ_MADH_Hv methylam 67.3 82 0.0018 27.2 20.0 55 220-283 278-335 (352)
177 PRK02888 nitrous-oxide reducta 67.1 1.1E+02 0.0024 28.6 12.4 54 221-281 296-354 (635)
178 KOG1332|consensus 65.8 70 0.0015 25.9 14.0 103 100-238 176-296 (299)
179 KOG0318|consensus 64.8 1.1E+02 0.0024 27.7 17.7 69 192-280 449-519 (603)
180 COG2706 3-carboxymuconate cycl 64.8 88 0.0019 26.6 19.5 194 47-277 54-273 (346)
181 PF13570 PQQ_3: PQQ-like domai 62.6 17 0.00037 19.6 3.4 26 246-279 15-40 (40)
182 KOG0649|consensus 62.3 83 0.0018 25.5 16.7 120 66-206 135-264 (325)
183 KOG0278|consensus 61.7 86 0.0019 25.5 9.6 93 164-282 165-258 (334)
184 KOG0266|consensus 60.4 1.3E+02 0.0028 27.0 16.4 105 98-233 214-322 (456)
185 KOG2048|consensus 60.0 1.5E+02 0.0033 27.7 20.2 238 22-301 48-300 (691)
186 PF08662 eIF2A: Eukaryotic tra 59.8 80 0.0017 24.4 10.9 75 221-302 83-165 (194)
187 KOG4378|consensus 58.7 1.4E+02 0.003 26.9 11.6 90 164-279 187-281 (673)
188 KOG1897|consensus 58.4 2E+02 0.0043 28.5 19.1 174 65-263 748-934 (1096)
189 KOG0306|consensus 57.1 1.4E+02 0.0029 28.5 9.7 98 140-262 378-475 (888)
190 PF07734 FBA_1: F-box associat 56.4 81 0.0018 23.5 8.7 81 95-179 2-90 (164)
191 KOG0305|consensus 55.6 1.6E+02 0.0035 26.7 14.1 80 67-155 197-279 (484)
192 KOG0646|consensus 55.3 1.5E+02 0.0033 26.3 11.7 63 87-156 80-145 (476)
193 PRK01742 tolB translocation pr 55.2 1.5E+02 0.0033 26.2 18.8 138 114-284 228-367 (429)
194 KOG0639|consensus 54.7 1.7E+02 0.0036 26.5 10.5 38 191-241 470-507 (705)
195 KOG0281|consensus 54.2 1.4E+02 0.003 25.5 10.7 52 221-281 340-391 (499)
196 KOG1898|consensus 53.2 2.5E+02 0.0054 28.1 14.3 118 164-304 912-1031(1205)
197 PF15525 DUF4652: Domain of un 52.5 1.1E+02 0.0023 23.7 11.2 73 162-242 86-161 (200)
198 PF07433 DUF1513: Protein of u 51.8 1.5E+02 0.0032 25.0 14.9 144 87-240 3-157 (305)
199 COG3386 Gluconolactonase [Carb 51.1 1.5E+02 0.0033 25.0 19.0 179 66-279 46-244 (307)
200 PRK01029 tolB translocation pr 50.8 1.8E+02 0.0039 25.8 19.0 59 221-285 351-410 (428)
201 KOG0282|consensus 49.9 78 0.0017 28.1 6.7 61 198-281 270-333 (503)
202 KOG3881|consensus 49.7 1.7E+02 0.0038 25.3 11.9 149 100-281 162-323 (412)
203 KOG0263|consensus 49.6 2.4E+02 0.0051 26.8 10.7 95 97-207 544-640 (707)
204 KOG0322|consensus 47.3 1.6E+02 0.0035 24.2 9.0 54 191-262 255-314 (323)
205 PF14583 Pectate_lyase22: Olig 47.0 1.9E+02 0.0041 25.3 8.7 79 145-244 46-125 (386)
206 KOG2048|consensus 47.0 2.5E+02 0.0054 26.4 15.0 52 114-175 47-101 (691)
207 KOG1445|consensus 46.9 1.7E+02 0.0036 27.4 8.5 58 164-230 742-799 (1012)
208 KOG2315|consensus 46.5 2.3E+02 0.0051 25.9 11.9 75 221-302 294-376 (566)
209 PLN03215 ascorbic acid mannose 46.4 2E+02 0.0044 25.1 15.7 98 76-183 189-304 (373)
210 PLN03215 ascorbic acid mannose 46.1 2E+02 0.0044 25.1 12.7 105 123-240 189-305 (373)
211 KOG0772|consensus 45.9 2.3E+02 0.0051 25.7 14.3 145 98-279 226-395 (641)
212 TIGR03074 PQQ_membr_DH membran 45.6 3E+02 0.0065 26.8 22.4 37 141-178 312-352 (764)
213 KOG0274|consensus 44.5 2.6E+02 0.0057 25.8 15.2 147 95-281 337-485 (537)
214 PF07734 FBA_1: F-box associat 43.5 1.4E+02 0.0029 22.3 11.7 86 142-239 2-93 (164)
215 COG3823 Glutamine cyclotransfe 43.0 1.7E+02 0.0037 23.3 8.5 98 140-262 50-150 (262)
216 PF07433 DUF1513: Protein of u 42.5 2.1E+02 0.0045 24.2 18.6 207 66-290 27-258 (305)
217 KOG0293|consensus 42.4 2.4E+02 0.0052 24.9 14.2 144 98-282 323-474 (519)
218 KOG0281|consensus 41.8 1.4E+02 0.0031 25.5 6.8 79 114-207 340-419 (499)
219 PF00400 WD40: WD domain, G-be 41.4 53 0.0011 17.0 3.5 18 252-276 22-39 (39)
220 KOG1446|consensus 37.6 2.5E+02 0.0054 23.6 15.2 184 67-281 80-265 (311)
221 KOG0308|consensus 36.8 3.7E+02 0.0079 25.3 10.2 95 145-262 129-234 (735)
222 COG4880 Secreted protein conta 36.3 3.1E+02 0.0068 24.4 13.6 55 65-124 404-459 (603)
223 PF11134 Phage_stabilise: Phag 35.5 1.1E+02 0.0023 27.2 5.4 13 270-282 307-319 (469)
224 KOG0772|consensus 35.4 3.5E+02 0.0076 24.7 13.9 128 87-242 315-456 (641)
225 PF13859 BNR_3: BNR repeat-lik 33.8 2.9E+02 0.0064 23.4 15.0 187 92-290 2-217 (310)
226 COG0823 TolB Periplasmic compo 32.6 3.6E+02 0.0079 24.0 11.9 148 114-285 218-366 (425)
227 PF13540 RCC1_2: Regulator of 31.8 75 0.0016 15.9 2.8 18 188-205 8-25 (30)
228 PF00780 CNH: CNH domain; Int 31.2 2.9E+02 0.0062 22.4 14.5 49 77-132 126-175 (275)
229 KOG0286|consensus 30.8 3.2E+02 0.007 22.9 20.4 184 47-281 111-306 (343)
230 KOG0640|consensus 29.6 3.5E+02 0.0076 22.9 10.9 85 114-207 238-326 (430)
231 PF12217 End_beta_propel: Cata 29.4 3.2E+02 0.007 22.5 11.7 62 92-153 194-257 (367)
232 KOG0647|consensus 28.8 3.6E+02 0.0077 22.8 15.1 54 164-231 94-147 (347)
233 PF14781 BBS2_N: Ciliary BBSom 28.4 2.4E+02 0.0051 20.5 11.1 56 221-284 73-133 (136)
234 KOG0308|consensus 27.6 5.3E+02 0.011 24.4 13.2 65 98-175 129-204 (735)
235 KOG0282|consensus 26.8 3.8E+02 0.0082 24.1 7.3 51 145-207 269-321 (503)
236 COG2706 3-carboxymuconate cycl 26.5 4.2E+02 0.009 22.8 19.7 168 99-292 52-239 (346)
237 COG3386 Gluconolactonase [Carb 25.9 4.1E+02 0.0088 22.5 20.7 172 66-263 84-278 (307)
238 KOG0319|consensus 25.9 6E+02 0.013 24.4 11.7 64 98-175 203-271 (775)
239 PTZ00334 trans-sialidase; Prov 25.6 6.4E+02 0.014 24.6 9.8 66 221-290 287-354 (780)
240 KOG0307|consensus 25.2 7.2E+02 0.016 25.1 9.8 97 164-281 184-287 (1049)
241 KOG0647|consensus 25.0 4.2E+02 0.0092 22.4 12.0 33 98-135 83-115 (347)
242 KOG0274|consensus 24.9 5.6E+02 0.012 23.8 19.1 136 114-284 311-447 (537)
243 COG0823 TolB Periplasmic compo 24.8 5E+02 0.011 23.2 15.5 149 67-237 218-367 (425)
244 KOG4378|consensus 24.4 2.7E+02 0.0058 25.3 6.0 66 93-173 215-281 (673)
245 PF15525 DUF4652: Domain of un 23.6 3.6E+02 0.0077 21.0 11.2 67 111-179 85-155 (200)
246 KOG2315|consensus 23.5 5.9E+02 0.013 23.5 11.8 64 145-230 282-345 (566)
247 TIGR03032 conserved hypothetic 23.2 4.8E+02 0.01 22.3 13.2 135 92-259 106-258 (335)
248 PF08662 eIF2A: Eukaryotic tra 23.2 3.5E+02 0.0077 20.8 13.4 108 145-279 71-180 (194)
249 KOG1897|consensus 22.9 7.9E+02 0.017 24.7 17.3 167 19-204 748-930 (1096)
250 KOG4649|consensus 22.8 4.4E+02 0.0096 21.8 13.4 54 114-179 33-90 (354)
251 PF03088 Str_synth: Strictosid 22.6 2.4E+02 0.0052 18.7 5.3 72 198-278 10-87 (89)
252 PF06739 SBBP: Beta-propeller 22.2 1.4E+02 0.0031 15.9 3.3 19 189-207 15-33 (38)
253 PF00780 CNH: CNH domain; Int 21.9 4.3E+02 0.0094 21.4 14.2 52 118-179 120-172 (275)
254 COG4447 Uncharacterized protei 21.8 4.8E+02 0.01 21.9 6.8 91 173-286 31-121 (339)
255 smart00564 PQQ beta-propeller 21.6 1.2E+02 0.0027 14.9 4.3 26 143-177 4-31 (33)
256 PF00614 PLDc: Phospholipase D 21.3 91 0.002 15.5 1.7 16 248-263 9-24 (28)
257 KOG0639|consensus 20.6 6.6E+02 0.014 23.0 10.4 110 93-231 469-583 (705)
258 PF08950 DUF1861: Protein of u 20.3 5.1E+02 0.011 21.6 8.5 62 142-206 33-95 (298)
259 PRK10115 protease 2; Provision 20.0 7.9E+02 0.017 23.6 20.7 193 66-284 152-352 (686)
No 1
>KOG4441|consensus
Probab=100.00 E-value=1.2e-48 Score=346.16 Aligned_cols=276 Identities=30% Similarity=0.541 Sum_probs=248.0
Q ss_pred ceeEEecccccc--eeEEEEEEeec--CceeeecccccccccceE------EEEeCccCc-CCCCcccceeeceEEEEeC
Q psy9754 6 DWELICKEGTEG--IKLLVIWIMDI--VTYDLSIERVSQRYDVKI------NSLAGGVDP-SSDEKTTDIVSNSVWSFNP 74 (306)
Q Consensus 6 ~~~l~~~gG~~~--~~~~~~~~~~~--~~W~~~~~~p~~r~~~~~------i~v~GG~~~-~~~~~~~~~~~~~~~~~d~ 74 (306)
.+.|+++||... .....+..||+ +.|..+++||.+|..+++ ||++||++. .. .++++++||+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~-------~l~~ve~YD~ 356 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSD-------RLSSVERYDP 356 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCc-------ccceEEEecC
Confidence 468999999864 55668999999 679999999999998888 999999984 32 6899999999
Q ss_pred CCCCeeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEccc
Q psy9754 75 NNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGY 154 (306)
Q Consensus 75 ~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~ 154 (306)
.+++|..+++|+.+|..+++++++++||++||.++...++++++|||.+++|+..++|+..|.++++++++++||++||.
T Consensus 357 ~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 357 RTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred CCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCc
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceE
Q psy9754 155 TGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWK 234 (306)
Q Consensus 155 ~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~ 234 (306)
+.... ..+++++|||.+++|+.+ ++|+.+|.++++++.+ ++||++||.+... ....+++||+.+++|.
T Consensus 437 ~~~~~--~l~sve~YDP~t~~W~~~-~~M~~~R~~~g~a~~~-~~iYvvGG~~~~~--------~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 437 DGSSN--CLNSVECYDPETNTWTLI-APMNTRRSGFGVAVLN-GKIYVVGGFDGTS--------ALSSVERYDPETNQWT 504 (571)
T ss_pred CCCcc--ccceEEEEcCCCCceeec-CCcccccccceEEEEC-CEEEEECCccCCC--------ccceEEEEcCCCCcee
Confidence 87763 278999999999999999 9999999999999999 9999999987632 2367999999999999
Q ss_pred ecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccceeccCCCCcccccceeeEEecC
Q psy9754 235 FVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPATILGHSSVALPL 303 (306)
Q Consensus 235 ~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~ 303 (306)
.+++|+.+|..++++.+++++|++||.+. ...++.+.+|||++++|+. ...+...|...+++++..
T Consensus 505 ~v~~m~~~rs~~g~~~~~~~ly~vGG~~~--~~~l~~ve~ydp~~d~W~~-~~~~~~~~~~~~~~~~~~ 570 (571)
T KOG4441|consen 505 MVAPMTSPRSAVGVVVLGGKLYAVGGFDG--NNNLNTVECYDPETDTWTE-VTEPESGRGGAGVAVIPM 570 (571)
T ss_pred EcccCccccccccEEEECCEEEEEecccC--ccccceeEEcCCCCCceee-CCCccccccCcceEEecC
Confidence 99999999999999999999999999665 4677999999999999999 566666666666666543
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2e-45 Score=326.93 Aligned_cols=258 Identities=21% Similarity=0.325 Sum_probs=219.3
Q ss_pred eEEecccccceeEEEEEEeec--CceeeecccccccccceE------EEEeCccCcCCCCcccceeeceEEEEeCCCCCe
Q psy9754 8 ELICKEGTEGIKLLVIWIMDI--VTYDLSIERVSQRYDVKI------NSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQW 79 (306)
Q Consensus 8 ~l~~~gG~~~~~~~~~~~~~~--~~W~~~~~~p~~r~~~~~------i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W 79 (306)
.|++.||........++.||+ ++|..++++|.+|..+++ ||++||...... ..+++++||+.+++|
T Consensus 259 ~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~------~~~~v~~Yd~~~n~W 332 (557)
T PHA02713 259 CLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNP------SLNKVYKINIENKIH 332 (557)
T ss_pred EEEEecCccccCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCC------ccceEEEEECCCCeE
Confidence 455555532222235789999 789999999999988766 999999753221 478999999999999
Q ss_pred eeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCC
Q psy9754 80 TQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKM 159 (306)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~ 159 (306)
..+++||.+|..+++++++++||++||.+.....+++++|||.+++|+.+++||.+|..+++++++++||++||......
T Consensus 333 ~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~ 412 (557)
T PHA02713 333 VELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHID 412 (557)
T ss_pred eeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccc
Confidence 99999999999999999999999999987666678899999999999999999999999999999999999999764210
Q ss_pred ---------------CCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceee
Q psy9754 160 ---------------NPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLD 224 (306)
Q Consensus 160 ---------------~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~ 224 (306)
....+.+++|||++++|+.+ ++++.+|..+++++++ ++||++||.+.... ....++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~~~r~~~~~~~~~-~~IYv~GG~~~~~~-------~~~~ve 483 (557)
T PHA02713 413 YTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFWTGTIRPGVVSHK-DDIYVVCDIKDEKN-------VKTCIF 483 (557)
T ss_pred cccccccccccccccccccceEEEECCCCCeEeec-CCCCcccccCcEEEEC-CEEEEEeCCCCCCc-------cceeEE
Confidence 01247899999999999999 8899999999988888 99999999763221 124579
Q ss_pred EEECCC-CceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccceecc
Q psy9754 225 VFVSNE-KEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKG 285 (306)
Q Consensus 225 ~y~~~~-~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~ 285 (306)
+||+.+ ++|+.+++||.+|..++++.++++||++||.+.. ..+++||+.+++|+.+
T Consensus 484 ~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~-----~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 484 RYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESY-----MLQDTFNVYTYEWNHI 540 (557)
T ss_pred EecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecce-----eehhhcCcccccccch
Confidence 999999 8999999999999999999999999999998752 4799999999999884
No 3
>KOG4441|consensus
Probab=100.00 E-value=6.7e-43 Score=309.51 Aligned_cols=238 Identities=28% Similarity=0.532 Sum_probs=218.3
Q ss_pred eEEEEeCccCcCCCCcccceeeceEEEEeCCCCCeeeCCCCCCCccceeeEEECCEEEEEccCC-CCCCCceeEEEeCCC
Q psy9754 45 KINSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQD-CKTLLSSVECYDPVA 123 (306)
Q Consensus 45 ~~i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~~d~~~ 123 (306)
..||++||...... ..+.+..||+.+++|..+++||.+|..+++++++++||++||.+ +...++++++||+.+
T Consensus 285 ~~l~~vGG~~~~~~------~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQ------SLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CeEEEECCCCCCCc------ccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCC
Confidence 34999999986322 68999999999999999999999999999999999999999999 678889999999999
Q ss_pred CcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEE
Q psy9754 124 HTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYII 203 (306)
Q Consensus 124 ~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~ 203 (306)
++|..+++|+.+|..+++++++|.||++||.++... .+++++||+.+++|+.+ ++++.+|.++++++++ ++||++
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~---l~svE~YDp~~~~W~~v-a~m~~~r~~~gv~~~~-g~iYi~ 433 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKS---LNSVECYDPVTNKWTPV-APMLTRRSGHGVAVLG-GKLYII 433 (571)
T ss_pred CceeccCCccCccccceeEEECCEEEEEeccccccc---cccEEEecCCCCccccc-CCCCcceeeeEEEEEC-CEEEEE
Confidence 999999999999999999999999999999997665 68999999999999999 8888899999999998 999999
Q ss_pred cCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeecccccee
Q psy9754 204 GGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWI 283 (306)
Q Consensus 204 GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~ 283 (306)
||...... .+.++++|||.+++|+.+++|+.+|..++++.+++.||++||.+. ...+..+++|||++++|+
T Consensus 434 GG~~~~~~-------~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~--~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 434 GGGDGSSN-------CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG--TSALSSVERYDPETNQWT 504 (571)
T ss_pred cCcCCCcc-------ccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC--CCccceEEEEcCCCCcee
Confidence 99876542 458899999999999999999999999999999999999999997 345677999999999999
Q ss_pred ccCCCCcccccceeeEEecC
Q psy9754 284 KGVSGLPATILGHSSVALPL 303 (306)
Q Consensus 284 ~~~~~~p~~r~~~~~~~~~~ 303 (306)
. ++.|+.+|..++++++..
T Consensus 505 ~-v~~m~~~rs~~g~~~~~~ 523 (571)
T KOG4441|consen 505 M-VAPMTSPRSAVGVVVLGG 523 (571)
T ss_pred E-cccCccccccccEEEECC
Confidence 9 799999999999998763
No 4
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.6e-41 Score=287.48 Aligned_cols=268 Identities=19% Similarity=0.256 Sum_probs=207.6
Q ss_pred Cceeeecc----cccccccceE------EEEeCccCcCCCCcccceeeceEEEEeCCCCCeeeCCCCC-CCc---cceee
Q psy9754 29 VTYDLSIE----RVSQRYDVKI------NSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMT-YPR---KIFSF 94 (306)
Q Consensus 29 ~~W~~~~~----~p~~r~~~~~------i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W~~~~~~~-~~~---~~~~~ 94 (306)
.+|..+.. +|.||.+|++ |||+||...... ...+++++||+.+++|..+++++ .|| ..+++
T Consensus 7 ~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~-----~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~ 81 (341)
T PLN02153 7 GGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNE-----HIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRM 81 (341)
T ss_pred CeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCC-----ceeCcEEEEECCCCEEEEcCccCCCCCCccCceEE
Confidence 57998865 7899999888 999999864321 14689999999999999987764 343 36788
Q ss_pred EEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCC-----cccccceeeEEECCEEEEEcccCCCCC---CCCCccE
Q psy9754 95 VSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPL-----KIARMGMAVAEINDKIWIAGGYTGDKM---NPVTDKV 166 (306)
Q Consensus 95 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~-----~~~~~~~~~~~~~~~iyv~GG~~~~~~---~~~~~~~ 166 (306)
++++++||++||.......+++++||+.+++|+.++++ |.+|..|++++.+++|||+||...... ....+++
T Consensus 82 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 82 VAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred EEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceE
Confidence 88999999999987776778999999999999999877 788999999999999999999864321 1124689
Q ss_pred EEEeCCCCeeEEccccc---CCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEeccc---CC
Q psy9754 167 ECYDPRTNTWTTLATKL---RYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTE---LV 240 (306)
Q Consensus 167 ~~~d~~~~~W~~~~~~~---~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~---~p 240 (306)
++||+++++|+.+ +.+ +.+|.++++++++ ++||++||................++++||+.+++|+++.. +|
T Consensus 162 ~~yd~~~~~W~~l-~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P 239 (341)
T PLN02153 162 EAYNIADGKWVQL-PDPGENFEKRGGAGFAVVQ-GKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP 239 (341)
T ss_pred EEEECCCCeEeeC-CCCCCCCCCCCcceEEEEC-CeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCC
Confidence 9999999999998 443 3678888888887 99999998753210000001124679999999999998874 68
Q ss_pred cccccceeeeeCCEEEEEeCccCc-------cccccceEEEeeccccceeccC----CCCcccccceeeEEecC
Q psy9754 241 VPRHAHSASVLSSQILIIGGVTTV-------YKRTLKSVECWCFDRQAWIKGV----SGLPATILGHSSVALPL 303 (306)
Q Consensus 241 ~~~~~~~~~~~~~~i~v~GG~~~~-------~~~~~~~~~~yd~~~~~W~~~~----~~~p~~r~~~~~~~~~~ 303 (306)
.+|..++++.++++||++||.... .....+++++||+++++|+.+. +.+|.+|..++++.+..
T Consensus 240 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~ 313 (341)
T PLN02153 240 SARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYG 313 (341)
T ss_pred CCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCC
Confidence 889999999999999999997421 1123568999999999998842 34555566566666543
No 5
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3.1e-41 Score=295.60 Aligned_cols=276 Identities=16% Similarity=0.242 Sum_probs=221.9
Q ss_pred cceeEEecccccceeEEE--EEEeec------Cceeeecc---cccccccceE------EEEeCccCcCCCCcccceeec
Q psy9754 5 WDWELICKEGTEGIKLLV--IWIMDI------VTYDLSIE---RVSQRYDVKI------NSLAGGVDPSSDEKTTDIVSN 67 (306)
Q Consensus 5 ~~~~l~~~gG~~~~~~~~--~~~~~~------~~W~~~~~---~p~~r~~~~~------i~v~GG~~~~~~~~~~~~~~~ 67 (306)
.+++|+.|.|+....+.. ++.+++ ++|..+.+ +|.||..|++ |||+||...... ...+
T Consensus 119 ~~~~ivgf~G~~~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~-----~~~~ 193 (470)
T PLN02193 119 QGGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQ-----PIDK 193 (470)
T ss_pred cCCeEEEEeccCCCcEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCC-----CeeC
Confidence 477899999986555443 444453 58998765 6889999988 999999854321 1457
Q ss_pred eEEEEeCCCCCeeeCCC---CCC-CccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCC---ccccccee
Q psy9754 68 SVWSFNPNNKQWTQEPN---MTY-PRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPL---KIARMGMA 140 (306)
Q Consensus 68 ~~~~~d~~t~~W~~~~~---~~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~---~~~~~~~~ 140 (306)
++|+||+++++|+.++. +|. +|..++++.++++|||+||......++++++||+.+++|++++++ |.+|..|+
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 89999999999998764 333 356788889999999999988767789999999999999999887 78999999
Q ss_pred eEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEccc--ccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCccccc
Q psy9754 141 VAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLAT--KLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMY 218 (306)
Q Consensus 141 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~ 218 (306)
++.++++|||+||...... .+.+++||+.+++|+.++. .++.+|..+++++++ ++||++||.+..
T Consensus 274 ~~~~~~~iYv~GG~~~~~~---~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~-gkiyviGG~~g~--------- 340 (470)
T PLN02193 274 MAADEENVYVFGGVSATAR---LKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQ-GKVWVVYGFNGC--------- 340 (470)
T ss_pred EEEECCEEEEECCCCCCCC---cceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEEC-CcEEEEECCCCC---------
Confidence 9999999999999875443 5789999999999999842 256778888888887 999999997532
Q ss_pred ccceeeEEECCCCceEecccC---CcccccceeeeeCCEEEEEeCccCcc-------ccccceEEEeeccccceeccCCC
Q psy9754 219 SVSDLDVFVSNEKEWKFVTEL---VVPRHAHSASVLSSQILIIGGVTTVY-------KRTLKSVECWCFDRQAWIKGVSG 288 (306)
Q Consensus 219 ~~~~~~~y~~~~~~W~~~~~~---p~~~~~~~~~~~~~~i~v~GG~~~~~-------~~~~~~~~~yd~~~~~W~~~~~~ 288 (306)
...++++||+.+++|+.+..+ |.+|..++++.++++|||+||..... ....+++++||+++++|+.+ ..
T Consensus 341 ~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~-~~ 419 (470)
T PLN02193 341 EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL-DK 419 (470)
T ss_pred ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc-cc
Confidence 247899999999999988754 88899999999999999999986411 12456899999999999984 32
Q ss_pred ------CcccccceeeE
Q psy9754 289 ------LPATILGHSSV 299 (306)
Q Consensus 289 ------~p~~r~~~~~~ 299 (306)
.|.+|..|+++
T Consensus 420 ~~~~~~~P~~R~~~~~~ 436 (470)
T PLN02193 420 FGEEEETPSSRGWTAST 436 (470)
T ss_pred CCCCCCCCCCCccccce
Confidence 46778777653
No 6
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.7e-40 Score=296.47 Aligned_cols=269 Identities=22% Similarity=0.386 Sum_probs=219.3
Q ss_pred eEEecccccceeEEEEEEeec--CceeeecccccccccceE-----EEEeCccCcCCCCcccceeeceEEEEeCCCCCee
Q psy9754 8 ELICKEGTEGIKLLVIWIMDI--VTYDLSIERVSQRYDVKI-----NSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWT 80 (306)
Q Consensus 8 ~l~~~gG~~~~~~~~~~~~~~--~~W~~~~~~p~~r~~~~~-----i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W~ 80 (306)
.+++.||.. .....+..|++ .+|..+++.|......++ ||++||...... ..++++.||+.+++|.
T Consensus 252 ~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~------~~~~v~~yd~~~~~W~ 324 (534)
T PHA03098 252 IIYIHITMS-IFTYNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNL------SVNSVVSYDTKTKSWN 324 (534)
T ss_pred ceEeecccc-hhhceeeecchhhhhcccccCccccccceEEEECCEEEEECCCcCCCC------eeccEEEEeCCCCeee
Confidence 344444443 22334556666 788888777644332233 999999865432 5679999999999999
Q ss_pred eCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCC
Q psy9754 81 QEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMN 160 (306)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~ 160 (306)
.+++||.+|..++++.++++||++||.......+++++||+.+++|+.++++|.+|..++++.++++||++||......
T Consensus 325 ~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~- 403 (534)
T PHA03098 325 KVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDE- 403 (534)
T ss_pred ECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCc-
Confidence 9999999999999999999999999988666778999999999999999999999999999999999999999754332
Q ss_pred CCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCC
Q psy9754 161 PVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELV 240 (306)
Q Consensus 161 ~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p 240 (306)
..+.+++||+.+++|+.+ +++|.+|.+++++..+ ++||++||....... .....+++||+.+++|+.++.+|
T Consensus 404 -~~~~v~~yd~~t~~W~~~-~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~-----~~~~~v~~yd~~~~~W~~~~~~~ 475 (534)
T PHA03098 404 -LLKTVECFSLNTNKWSKG-SPLPISHYGGCAIYHD-GKIYVIGGISYIDNI-----KVYNIVESYNPVTNKWTELSSLN 475 (534)
T ss_pred -ccceEEEEeCCCCeeeec-CCCCccccCceEEEEC-CEEEEECCccCCCCC-----cccceEEEecCCCCceeeCCCCC
Confidence 258899999999999999 7888999988888887 999999997643221 12356999999999999999999
Q ss_pred cccccceeeeeCCEEEEEeCccCccccccceEEEeeccccceeccCCCCcccccc
Q psy9754 241 VPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPATILG 295 (306)
Q Consensus 241 ~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~p~~r~~ 295 (306)
.+|..++++.++++||++||.... ...+++++||+++++|+. ++.+|.-...
T Consensus 476 ~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~v~~yd~~~~~W~~-~~~~p~~~~~ 527 (534)
T PHA03098 476 FPRINASLCIFNNKIYVVGGDKYE--YYINEIEVYDDKTNTWTL-FCKFPKVIGS 527 (534)
T ss_pred cccccceEEEECCEEEEEcCCcCC--cccceeEEEeCCCCEEEe-cCCCcccccc
Confidence 999999999999999999998753 235789999999999998 6777754443
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.5e-39 Score=275.38 Aligned_cols=266 Identities=17% Similarity=0.291 Sum_probs=201.0
Q ss_pred ccceeEEecccccc---eeEEEEEEeec--Cceeeecccc-cccc---cceE------EEEeCccCcCCCCcccceeece
Q psy9754 4 IWDWELICKEGTEG---IKLLVIWIMDI--VTYDLSIERV-SQRY---DVKI------NSLAGGVDPSSDEKTTDIVSNS 68 (306)
Q Consensus 4 ~~~~~l~~~gG~~~---~~~~~~~~~~~--~~W~~~~~~p-~~r~---~~~~------i~v~GG~~~~~~~~~~~~~~~~ 68 (306)
..+++|||+||... ....+++.||+ ++|..+++++ .||. ++++ ||+|||..... .+++
T Consensus 30 ~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~-------~~~~ 102 (341)
T PLN02153 30 VVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR-------EFSD 102 (341)
T ss_pred EECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC-------ccCc
Confidence 45789999999842 22358999999 7899887654 3432 4544 99999986532 4689
Q ss_pred EEEEeCCCCCeeeCCCC-----CCCccceeeEEECCEEEEEccCCCC------CCCceeEEEeCCCCcEEeccCCc---c
Q psy9754 69 VWSFNPNNKQWTQEPNM-----TYPRKIFSFVSCLDKIYAIGGQDCK------TLLSSVECYDPVAHTWEDVAPLK---I 134 (306)
Q Consensus 69 ~~~~d~~t~~W~~~~~~-----~~~~~~~~~~~~~~~iyv~GG~~~~------~~~~~~~~~d~~~~~w~~~~~~~---~ 134 (306)
+++||+.+++|+.++++ |.+|..|+++.++++|||+||.... ..++++++||+.+++|++++++. .
T Consensus 103 v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~ 182 (341)
T PLN02153 103 FYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFE 182 (341)
T ss_pred EEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCC
Confidence 99999999999999877 7889999999999999999998643 13568999999999999998764 6
Q ss_pred cccceeeEEECCEEEEEcccCCC-----CCCCCCccEEEEeCCCCeeEEccc--ccCCcceeEEEEEEeCCEEEEEcCCC
Q psy9754 135 ARMGMAVAEINDKIWIAGGYTGD-----KMNPVTDKVECYDPRTNTWTTLAT--KLRYPRYLATLVSVNNEKLYIIGGAS 207 (306)
Q Consensus 135 ~~~~~~~~~~~~~iyv~GG~~~~-----~~~~~~~~~~~~d~~~~~W~~~~~--~~~~~~~~~~~~~~~~~~iyi~GG~~ 207 (306)
+|.++++++++++||++||.... ......+.+++||+++++|+++.. .+|.+|..+++++++ ++||++||..
T Consensus 183 ~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~-~~iyv~GG~~ 261 (341)
T PLN02153 183 KRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVG-KYIIIFGGEV 261 (341)
T ss_pred CCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEEC-CEEEEECccc
Confidence 88999999999999999986421 111124789999999999999842 357789888988888 9999999974
Q ss_pred CCCCC-CcccccccceeeEEECCCCceEecc-----cCCcccccceeeee--CCEEEEEeCccCccccccceEEEeecc
Q psy9754 208 QTDAT-NTQKMYSVSDLDVFVSNEKEWKFVT-----ELVVPRHAHSASVL--SSQILIIGGVTTVYKRTLKSVECWCFD 278 (306)
Q Consensus 208 ~~~~~-~~~~~~~~~~~~~y~~~~~~W~~~~-----~~p~~~~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~yd~~ 278 (306)
..... ........+++++||+.+++|+.+. ++|..+..++++.+ +++||++||.+... ..+++++.|+..
T Consensus 262 ~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~-~~~~~~~~~~~~ 339 (341)
T PLN02153 262 WPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTN-ERTDDLYFYAVN 339 (341)
T ss_pred CCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCC-ccccceEEEecc
Confidence 32110 0001123468999999999999886 33444443344433 56899999997642 567899999764
No 8
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=6.8e-40 Score=291.64 Aligned_cols=231 Identities=13% Similarity=0.242 Sum_probs=198.2
Q ss_pred eceEEEEeCCCCCeeeCCCCCCCccceeeEEECCEEEEEccCC-CCCCCceeEEEeCCCCcEEeccCCcccccceeeEEE
Q psy9754 66 SNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQD-CKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEI 144 (306)
Q Consensus 66 ~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~ 144 (306)
...+++||+.+++|..+++||.+|..+++++++++||++||.. .....+++++||+.+++|+++++|+.+|..++++++
T Consensus 271 ~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 271 NPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 3578999999999999999999999999999999999999975 334578899999999999999999999999999999
Q ss_pred CCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCc----------
Q psy9754 145 NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNT---------- 214 (306)
Q Consensus 145 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~---------- 214 (306)
+++||++||..+... .+.+++||+.+++|+.+ ++++.+|..+++++++ ++||++||.........
T Consensus 351 ~g~IYviGG~~~~~~---~~sve~Ydp~~~~W~~~-~~mp~~r~~~~~~~~~-g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 351 DDTIYAIGGQNGTNV---ERTIECYTMGDDKWKML-PDMPIALSSYGMCVLD-QYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred CCEEEEECCcCCCCC---CceEEEEECCCCeEEEC-CCCCcccccccEEEEC-CEEEEEeCCCccccccccccccccccc
Confidence 999999999865432 57899999999999999 8899999998888888 99999999753211000
Q ss_pred ccccccceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccc-cceeccCCCCcccc
Q psy9754 215 QKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDR-QAWIKGVSGLPATI 293 (306)
Q Consensus 215 ~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~-~~W~~~~~~~p~~r 293 (306)
........+++|||.+++|+.+++|+.+|..++++.++++||++||.+... ...+.+++|||++ ++|+. +++||.+|
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~-~~~~~ve~Ydp~~~~~W~~-~~~m~~~r 503 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEK-NVKTCIFRYNTNTYNGWEL-ITTTESRL 503 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCC-ccceeEEEecCCCCCCeeE-ccccCccc
Confidence 001124679999999999999999999999999999999999999986421 2235689999999 89999 89999999
Q ss_pred cceeeEEecC
Q psy9754 294 LGHSSVALPL 303 (306)
Q Consensus 294 ~~~~~~~~~~ 303 (306)
..++++++..
T Consensus 504 ~~~~~~~~~~ 513 (557)
T PHA02713 504 SALHTILHDN 513 (557)
T ss_pred ccceeEEECC
Confidence 9999999863
No 9
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=8.3e-40 Score=275.16 Aligned_cols=251 Identities=14% Similarity=0.156 Sum_probs=199.0
Q ss_pred CcccceeEEecccccce-----------eEEEEEEee-c-C--ceeeecccccccccceE------EEEeCccCcCCCCc
Q psy9754 2 SEIWDWELICKEGTEGI-----------KLLVIWIMD-I-V--TYDLSIERVSQRYDVKI------NSLAGGVDPSSDEK 60 (306)
Q Consensus 2 ~~~~~~~l~~~gG~~~~-----------~~~~~~~~~-~-~--~W~~~~~~p~~r~~~~~------i~v~GG~~~~~~~~ 60 (306)
.+++++.|||+||.+.. ...+++.|+ + . +|..++++|.+|..+++ ||++||.....
T Consensus 9 ~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~--- 85 (323)
T TIGR03548 9 AGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSE--- 85 (323)
T ss_pred eeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCC---
Confidence 57889999999997442 234677774 4 2 69999999999976655 99999986432
Q ss_pred ccceeeceEEEEeCCCCCe----eeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcc-c
Q psy9754 61 TTDIVSNSVWSFNPNNKQW----TQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKI-A 135 (306)
Q Consensus 61 ~~~~~~~~~~~~d~~t~~W----~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~-~ 135 (306)
.++++++||+.+++| +.++++|.+|..+++++++++||++||.......+++++||+.+++|++++++|. +
T Consensus 86 ----~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~ 161 (323)
T TIGR03548 86 ----RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP 161 (323)
T ss_pred ----CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC
Confidence 478999999999988 7889999999999999999999999998665667899999999999999999884 7
Q ss_pred ccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccC---Cc--ceeEEEEEEeCCEEEEEcCCCCCC
Q psy9754 136 RMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLR---YP--RYLATLVSVNNEKLYIIGGASQTD 210 (306)
Q Consensus 136 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~---~~--~~~~~~~~~~~~~iyi~GG~~~~~ 210 (306)
|..+.+++++++|||+||..... ..++++||+++++|+.+ ++++ .| +..++.+++.+++||++||.+...
T Consensus 162 r~~~~~~~~~~~iYv~GG~~~~~----~~~~~~yd~~~~~W~~~-~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~ 236 (323)
T TIGR03548 162 RVQPVCVKLQNELYVFGGGSNIA----YTDGYKYSPKKNQWQKV-ADPTTDSEPISLLGAASIKINESLLLCIGGFNKDV 236 (323)
T ss_pred CCcceEEEECCEEEEEcCCCCcc----ccceEEEecCCCeeEEC-CCCCCCCCceeccceeEEEECCCEEEEECCcCHHH
Confidence 88888889999999999976432 35689999999999999 4432 23 334444555558999999986321
Q ss_pred CCC------------------------cccccccceeeEEECCCCceEecccCC-cccccceeeeeCCEEEEEeCccCc
Q psy9754 211 ATN------------------------TQKMYSVSDLDVFVSNEKEWKFVTELV-VPRHAHSASVLSSQILIIGGVTTV 264 (306)
Q Consensus 211 ~~~------------------------~~~~~~~~~~~~y~~~~~~W~~~~~~p-~~~~~~~~~~~~~~i~v~GG~~~~ 264 (306)
..+ ........++++||+.+++|+.++++| .+|..++++.++++||++||....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~p 315 (323)
T TIGR03548 237 YNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGELKP 315 (323)
T ss_pred HHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEeccccC
Confidence 000 000112357999999999999999887 578899999999999999998753
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=7.9e-39 Score=272.03 Aligned_cols=265 Identities=18% Similarity=0.263 Sum_probs=197.7
Q ss_pred cccceeEEecccccceeEEEEEEeec----Cceeeecccc-cccccceE------EEEeCccCcCCCCcccceeeceEEE
Q psy9754 3 EIWDWELICKEGTEGIKLLVIWIMDI----VTYDLSIERV-SQRYDVKI------NSLAGGVDPSSDEKTTDIVSNSVWS 71 (306)
Q Consensus 3 ~~~~~~l~~~gG~~~~~~~~~~~~~~----~~W~~~~~~p-~~r~~~~~------i~v~GG~~~~~~~~~~~~~~~~~~~ 71 (306)
++.+++|||+||... ..++.||+ ++|..+++|| .+|..+++ |||+||........ ....++++++
T Consensus 14 ~~~~~~vyv~GG~~~---~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~-~~~~~~~v~~ 89 (346)
T TIGR03547 14 AIIGDKVYVGLGSAG---TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEG-SPQVFDDVYR 89 (346)
T ss_pred EEECCEEEEEccccC---CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCC-cceecccEEE
Confidence 367899999999743 34677774 6899999999 58887766 99999986432100 1125789999
Q ss_pred EeCCCCCeeeCC-CCCCCccceeeE-EECCEEEEEccCCCCC----------------------------------CCce
Q psy9754 72 FNPNNKQWTQEP-NMTYPRKIFSFV-SCLDKIYAIGGQDCKT----------------------------------LLSS 115 (306)
Q Consensus 72 ~d~~t~~W~~~~-~~~~~~~~~~~~-~~~~~iyv~GG~~~~~----------------------------------~~~~ 115 (306)
||+.+++|+.++ ++|.+|..++++ .++++||++||..... ..++
T Consensus 90 Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (346)
T TIGR03547 90 YDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKN 169 (346)
T ss_pred EECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccce
Confidence 999999999997 456667667666 6899999999976320 1378
Q ss_pred eEEEeCCCCcEEeccCCcc-cccceeeEEECCEEEEEcccCCCCCCCCCccEEEE--eCCCCeeEEcccccCCcc-----
Q psy9754 116 VECYDPVAHTWEDVAPLKI-ARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECY--DPRTNTWTTLATKLRYPR----- 187 (306)
Q Consensus 116 ~~~~d~~~~~w~~~~~~~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~--d~~~~~W~~~~~~~~~~~----- 187 (306)
+++||+.+++|+.+++||. +|..+++++++++|||+||....... ...++.| |+++++|+.+ ++++.+|
T Consensus 170 v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~--~~~~~~y~~~~~~~~W~~~-~~m~~~r~~~~~ 246 (346)
T TIGR03547 170 VLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLR--TAEVKQYLFTGGKLEWNKL-PPLPPPKSSSQE 246 (346)
T ss_pred EEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCcc--chheEEEEecCCCceeeec-CCCCCCCCCccc
Confidence 9999999999999999996 68888999999999999997543321 2445555 4577899999 7776654
Q ss_pred --eeEEEEEEeCCEEEEEcCCCCCCCCC---------cccccccceeeEEECCCCceEecccCCcccccceeeeeCCEEE
Q psy9754 188 --YLATLVSVNNEKLYIIGGASQTDATN---------TQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQIL 256 (306)
Q Consensus 188 --~~~~~~~~~~~~iyi~GG~~~~~~~~---------~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~ 256 (306)
..+++++++ ++||++||.+...... .........+++||+++++|+.+.++|.+|..++++.++++||
T Consensus 247 ~~~~~~a~~~~-~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iy 325 (346)
T TIGR03547 247 GLAGAFAGISN-GVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVL 325 (346)
T ss_pred cccEEeeeEEC-CEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEE
Confidence 244456666 9999999975321100 0000112468999999999999999999999888888999999
Q ss_pred EEeCccCccccccceEEEee
Q psy9754 257 IIGGVTTVYKRTLKSVECWC 276 (306)
Q Consensus 257 v~GG~~~~~~~~~~~~~~yd 276 (306)
++||.+... ...++|+.+-
T Consensus 326 v~GG~~~~~-~~~~~v~~~~ 344 (346)
T TIGR03547 326 LIGGENSGG-KAVTDVYLLS 344 (346)
T ss_pred EEeccCCCC-CEeeeEEEEE
Confidence 999987532 4556776553
No 11
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.6e-38 Score=271.94 Aligned_cols=272 Identities=19% Similarity=0.278 Sum_probs=204.5
Q ss_pred ccceeEEecccccceeEEEEEEeec----Cceeeecccc-cccccceE------EEEeCccCcCCCCcccceeeceEEEE
Q psy9754 4 IWDWELICKEGTEGIKLLVIWIMDI----VTYDLSIERV-SQRYDVKI------NSLAGGVDPSSDEKTTDIVSNSVWSF 72 (306)
Q Consensus 4 ~~~~~l~~~gG~~~~~~~~~~~~~~----~~W~~~~~~p-~~r~~~~~------i~v~GG~~~~~~~~~~~~~~~~~~~~ 72 (306)
..+++|||+||..... ++.||. ++|..++++| .+|.++++ |||+||....... +....++++++|
T Consensus 36 ~~~~~iyv~gG~~~~~---~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~-~~~~~~~~v~~Y 111 (376)
T PRK14131 36 IDNNTVYVGLGSAGTS---WYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSE-GSPQVFDDVYKY 111 (376)
T ss_pred EECCEEEEEeCCCCCe---EEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCC-CceeEcccEEEE
Confidence 4689999999975433 566665 5799999998 47877765 9999998641110 111257899999
Q ss_pred eCCCCCeeeCCC-CCCCccceeeEE-ECCEEEEEccCCCC----------------------------------CCCcee
Q psy9754 73 NPNNKQWTQEPN-MTYPRKIFSFVS-CLDKIYAIGGQDCK----------------------------------TLLSSV 116 (306)
Q Consensus 73 d~~t~~W~~~~~-~~~~~~~~~~~~-~~~~iyv~GG~~~~----------------------------------~~~~~~ 116 (306)
|+.+++|+.+++ +|.++..|++++ .+++||++||.... ...+++
T Consensus 112 D~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v 191 (376)
T PRK14131 112 DPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEV 191 (376)
T ss_pred eCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceE
Confidence 999999999985 466677777766 79999999997531 124789
Q ss_pred EEEeCCCCcEEeccCCcc-cccceeeEEECCEEEEEcccCCCCCCCCCccE--EEEeCCCCeeEEcccccCCcce-----
Q psy9754 117 ECYDPVAHTWEDVAPLKI-ARMGMAVAEINDKIWIAGGYTGDKMNPVTDKV--ECYDPRTNTWTTLATKLRYPRY----- 188 (306)
Q Consensus 117 ~~~d~~~~~w~~~~~~~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~--~~~d~~~~~W~~~~~~~~~~~~----- 188 (306)
++||+.+++|+.++++|. ++.+++++.++++|||+||....... ...+ ..||+++++|+.+ +++|.+|.
T Consensus 192 ~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~--~~~~~~~~~~~~~~~W~~~-~~~p~~~~~~~~~ 268 (376)
T PRK14131 192 LSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLR--TDAVKQGKFTGNNLKWQKL-PDLPPAPGGSSQE 268 (376)
T ss_pred EEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcC--ChhheEEEecCCCcceeec-CCCCCCCcCCcCC
Confidence 999999999999999996 68888888999999999997543321 2333 4567889999999 77766653
Q ss_pred ---eEEEEEEeCCEEEEEcCCCCCCCCC---------cccccccceeeEEECCCCceEecccCCcccccceeeeeCCEEE
Q psy9754 189 ---LATLVSVNNEKLYIIGGASQTDATN---------TQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQIL 256 (306)
Q Consensus 189 ---~~~~~~~~~~~iyi~GG~~~~~~~~---------~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~ 256 (306)
.+.+++.+ ++||++||........ .........+++||+++++|+.++.+|.+|..++++.++++||
T Consensus 269 ~~~~~~a~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iy 347 (376)
T PRK14131 269 GVAGAFAGYSN-GVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVL 347 (376)
T ss_pred ccceEeceeEC-CEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCEEE
Confidence 12234556 9999999976422100 0001112357899999999999999999999999999999999
Q ss_pred EEeCccCccccccceEEEeeccccceec
Q psy9754 257 IIGGVTTVYKRTLKSVECWCFDRQAWIK 284 (306)
Q Consensus 257 v~GG~~~~~~~~~~~~~~yd~~~~~W~~ 284 (306)
++||.... ...++++++|++++++++.
T Consensus 348 v~GG~~~~-~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 348 LIGGETAG-GKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEcCCCCC-CcEeeeEEEEEEcCCEEEE
Confidence 99997643 2567899999999888754
No 12
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.2e-38 Score=277.57 Aligned_cols=264 Identities=18% Similarity=0.332 Sum_probs=206.9
Q ss_pred cccceeEEecccccc--e-eEEEEEEeec--Cceeeecc---cccc-cccceE------EEEeCccCcCCCCcccceeec
Q psy9754 3 EIWDWELICKEGTEG--I-KLLVIWIMDI--VTYDLSIE---RVSQ-RYDVKI------NSLAGGVDPSSDEKTTDIVSN 67 (306)
Q Consensus 3 ~~~~~~l~~~gG~~~--~-~~~~~~~~~~--~~W~~~~~---~p~~-r~~~~~------i~v~GG~~~~~~~~~~~~~~~ 67 (306)
+++++.||++||... . ...+++.||+ ++|+.++. +|.+ |..+++ |||+||..... .++
T Consensus 172 ~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-------~~n 244 (470)
T PLN02193 172 AQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-------QYN 244 (470)
T ss_pred EEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-------CCc
Confidence 456899999999732 2 2347999999 78998753 4443 445554 99999986532 578
Q ss_pred eEEEEeCCCCCeeeCCCC---CCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccC---Ccccccceee
Q psy9754 68 SVWSFNPNNKQWTQEPNM---TYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAP---LKIARMGMAV 141 (306)
Q Consensus 68 ~~~~~d~~t~~W~~~~~~---~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~---~~~~~~~~~~ 141 (306)
++++||+.+++|++++++ |.+|..|+++.++++|||+||.......+++++||+.+++|+++++ ++.+|.++++
T Consensus 245 dv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~ 324 (470)
T PLN02193 245 GFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGL 324 (470)
T ss_pred cEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEE
Confidence 999999999999999887 7899999999999999999998877778899999999999999865 5678899999
Q ss_pred EEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEccc--ccCCcceeEEEEEEeCCEEEEEcCCCCCCCCC-ccccc
Q psy9754 142 AEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLAT--KLRYPRYLATLVSVNNEKLYIIGGASQTDATN-TQKMY 218 (306)
Q Consensus 142 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~-~~~~~ 218 (306)
++++++||++||..... .+++++||+++++|+.+.. ..|.+|..++++.++ ++||++||........ .....
T Consensus 325 ~~~~gkiyviGG~~g~~----~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~ 399 (470)
T PLN02193 325 EVVQGKVWVVYGFNGCE----VDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVG-KHIVIFGGEIAMDPLAHVGPGQ 399 (470)
T ss_pred EEECCcEEEEECCCCCc----cCceEEEECCCCEEEEeccCCCCCCCcceeEEEEEC-CEEEEECCccCCccccccCccc
Confidence 99999999999976432 5889999999999999842 347789888888888 9999999986422110 00112
Q ss_pred ccceeeEEECCCCceEeccc------CCcccccceee--ee--CCEEEEEeCccCccccccceEEEeeccc
Q psy9754 219 SVSDLDVFVSNEKEWKFVTE------LVVPRHAHSAS--VL--SSQILIIGGVTTVYKRTLKSVECWCFDR 279 (306)
Q Consensus 219 ~~~~~~~y~~~~~~W~~~~~------~p~~~~~~~~~--~~--~~~i~v~GG~~~~~~~~~~~~~~yd~~~ 279 (306)
..+++++||+.+++|+.+.. .|.+|..++++ .+ ++.|+++||.... ...++++|+|++++
T Consensus 400 ~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~-~~~~~D~~~~~~~~ 469 (470)
T PLN02193 400 LTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPT-NDRFDDLFFYGIDS 469 (470)
T ss_pred eeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCc-cccccceEEEecCC
Confidence 34689999999999998874 35667766543 33 3459999999753 36679999998765
No 13
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=5.5e-38 Score=266.85 Aligned_cols=248 Identities=20% Similarity=0.323 Sum_probs=192.4
Q ss_pred ecccccccccceE------EEEeCccCcCCCCcccceeeceEEEEeC--CCCCeeeCCCCC-CCccceeeEEECCEEEEE
Q psy9754 34 SIERVSQRYDVKI------NSLAGGVDPSSDEKTTDIVSNSVWSFNP--NNKQWTQEPNMT-YPRKIFSFVSCLDKIYAI 104 (306)
Q Consensus 34 ~~~~p~~r~~~~~------i~v~GG~~~~~~~~~~~~~~~~~~~~d~--~t~~W~~~~~~~-~~~~~~~~~~~~~~iyv~ 104 (306)
+++||.+|..+++ |||+||.. .+.+++||+ .+++|..+++|| .+|..+++++++++||++
T Consensus 1 ~~~lp~~~~~~~~~~~~~~vyv~GG~~-----------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~ 69 (346)
T TIGR03547 1 LPDLPVGFKNGTGAIIGDKVYVGLGSA-----------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVF 69 (346)
T ss_pred CCCCCccccCceEEEECCEEEEEcccc-----------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEE
Confidence 4678888886555 99999963 256889986 678899999999 589999999999999999
Q ss_pred ccCCCC------CCCceeEEEeCCCCcEEecc-CCcccccceeeE-EECCEEEEEcccCCCCC-----------------
Q psy9754 105 GGQDCK------TLLSSVECYDPVAHTWEDVA-PLKIARMGMAVA-EINDKIWIAGGYTGDKM----------------- 159 (306)
Q Consensus 105 GG~~~~------~~~~~~~~~d~~~~~w~~~~-~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~----------------- 159 (306)
||.... ..++++++||+.+++|++++ ++|..+.+++++ +++++||++||......
T Consensus 70 GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 149 (346)
T TIGR03547 70 GGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPK 149 (346)
T ss_pred eCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhh
Confidence 998542 24678999999999999997 456777777766 78999999999753210
Q ss_pred --------------CCCCccEEEEeCCCCeeEEcccccCC-cceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceee
Q psy9754 160 --------------NPVTDKVECYDPRTNTWTTLATKLRY-PRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLD 224 (306)
Q Consensus 160 --------------~~~~~~~~~~d~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~ 224 (306)
....+.+++||+.+++|+.+ +++|. +|..++++.++ ++||++||...... ...+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~-~~~p~~~r~~~~~~~~~-~~iyv~GG~~~~~~-------~~~~~~ 220 (346)
T TIGR03547 150 DKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNL-GENPFLGTAGSAIVHKG-NKLLLINGEIKPGL-------RTAEVK 220 (346)
T ss_pred hhhHHHHhCCChhHcCccceEEEEECCCCceeEC-ccCCCCcCCCceEEEEC-CEEEEEeeeeCCCc-------cchheE
Confidence 00136899999999999999 77775 67777777777 99999999753221 123455
Q ss_pred EEE--CCCCceEecccCCcccc-------cceeeeeCCEEEEEeCccCccc---------------cccceEEEeecccc
Q psy9754 225 VFV--SNEKEWKFVTELVVPRH-------AHSASVLSSQILIIGGVTTVYK---------------RTLKSVECWCFDRQ 280 (306)
Q Consensus 225 ~y~--~~~~~W~~~~~~p~~~~-------~~~~~~~~~~i~v~GG~~~~~~---------------~~~~~~~~yd~~~~ 280 (306)
.|+ +++++|+.++.||.+|. .++++.++++||++||.+.... ..+..+++||++++
T Consensus 221 ~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~ 300 (346)
T TIGR03547 221 QYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG 300 (346)
T ss_pred EEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC
Confidence 565 46779999999987652 3446678999999999763210 12246899999999
Q ss_pred ceeccCCCCcccccceeeEEec
Q psy9754 281 AWIKGVSGLPATILGHSSVALP 302 (306)
Q Consensus 281 ~W~~~~~~~p~~r~~~~~~~~~ 302 (306)
+|+. ++.||.+|..++++++.
T Consensus 301 ~W~~-~~~lp~~~~~~~~~~~~ 321 (346)
T TIGR03547 301 KWSK-VGKLPQGLAYGVSVSWN 321 (346)
T ss_pred cccc-cCCCCCCceeeEEEEcC
Confidence 9999 78999999998887665
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=4.3e-38 Score=276.46 Aligned_cols=203 Identities=23% Similarity=0.447 Sum_probs=182.0
Q ss_pred EEEeCccCcCCCCcccceeeceEEEEeCCCCCeeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCcE
Q psy9754 47 NSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTW 126 (306)
Q Consensus 47 i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w 126 (306)
||++||.+... ..+.+++|||.+++|..+++|+.+|..+++++++++||++||.+. ..++++||+.+++|
T Consensus 274 lyviGG~~~~~-------~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W 343 (480)
T PHA02790 274 VYLIGGWMNNE-------IHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAW 343 (480)
T ss_pred EEEEcCCCCCC-------cCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCCeE
Confidence 99999986432 468899999999999999999999999999999999999999754 26689999999999
Q ss_pred EeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCC
Q psy9754 127 EDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGA 206 (306)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~ 206 (306)
+.+++||.+|..+++++++++||++||.... .+.+++|||.+++|+.+ ++++.+|..+++++++ ++||++||.
T Consensus 344 ~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-----~~~ve~ydp~~~~W~~~-~~m~~~r~~~~~~~~~-~~IYv~GG~ 416 (480)
T PHA02790 344 VNMPSLLKPRCNPAVASINNVIYVIGGHSET-----DTTTEYLLPNHDQWQFG-PSTYYPHYKSCALVFG-RRLFLVGRN 416 (480)
T ss_pred EECCCCCCCCcccEEEEECCEEEEecCcCCC-----CccEEEEeCCCCEEEeC-CCCCCccccceEEEEC-CEEEEECCc
Confidence 9999999999999999999999999997532 35789999999999999 8899999998888888 999999984
Q ss_pred CCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccceec
Q psy9754 207 SQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIK 284 (306)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~ 284 (306)
+++||+++++|+.++++|.+|..++++.++++||++||.+.. ..++.+++||+++++|+.
T Consensus 417 ----------------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~--~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 417 ----------------AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRG--SYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred ----------------eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCC--cccceEEEEECCCCeEEe
Confidence 378999999999999999999999999999999999998642 235789999999999976
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2.1e-37 Score=260.54 Aligned_cols=242 Identities=19% Similarity=0.302 Sum_probs=192.3
Q ss_pred EEEeCccCcCCC---CcccceeeceEEEEeCCC--CCeeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeC
Q psy9754 47 NSLAGGVDPSSD---EKTTDIVSNSVWSFNPNN--KQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDP 121 (306)
Q Consensus 47 i~v~GG~~~~~~---~~~~~~~~~~~~~~d~~t--~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~ 121 (306)
|||+||.+.... +.+.+...+++++|+... .+|..+++||.+|..+++++++++||++||......++++++||+
T Consensus 16 l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~ 95 (323)
T TIGR03548 16 ILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITL 95 (323)
T ss_pred EEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEE
Confidence 999999876532 123345778899986333 269999999999988888889999999999887777889999999
Q ss_pred CCCcE----EeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccC-CcceeEEEEEEe
Q psy9754 122 VAHTW----EDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLR-YPRYLATLVSVN 196 (306)
Q Consensus 122 ~~~~w----~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~-~~~~~~~~~~~~ 196 (306)
.+++| +.++++|.+|..+++++++++||++||...... .+++++||+.+++|+++ ++++ .+|..++++.++
T Consensus 96 ~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~---~~~v~~yd~~~~~W~~~-~~~p~~~r~~~~~~~~~ 171 (323)
T TIGR03548 96 DESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKP---SNKSYLFNLETQEWFEL-PDFPGEPRVQPVCVKLQ 171 (323)
T ss_pred cCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCcc---CceEEEEcCCCCCeeEC-CCCCCCCCCcceEEEEC
Confidence 99987 788999999999999999999999999754332 58999999999999999 6665 478877777777
Q ss_pred CCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCC---ccc--ccce-eeeeCCEEEEEeCccCcc-----
Q psy9754 197 NEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELV---VPR--HAHS-ASVLSSQILIIGGVTTVY----- 265 (306)
Q Consensus 197 ~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p---~~~--~~~~-~~~~~~~i~v~GG~~~~~----- 265 (306)
++||++||..... ..++++||+.+++|+.+++++ .++ ..++ ++..+++||++||.+...
T Consensus 172 -~~iYv~GG~~~~~---------~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 241 (323)
T TIGR03548 172 -NELYVFGGGSNIA---------YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAV 241 (323)
T ss_pred -CEEEEEcCCCCcc---------ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHH
Confidence 9999999975321 246799999999999998753 233 2333 334489999999986421
Q ss_pred -------------------------ccccceEEEeeccccceeccCCCCc-ccccceeeEEecC
Q psy9754 266 -------------------------KRTLKSVECWCFDRQAWIKGVSGLP-ATILGHSSVALPL 303 (306)
Q Consensus 266 -------------------------~~~~~~~~~yd~~~~~W~~~~~~~p-~~r~~~~~~~~~~ 303 (306)
....+++++||+++++|+. ++.+| .+|..++++++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~~r~~~~~~~~~~ 304 (323)
T TIGR03548 242 IDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKS-IGNSPFFARCGAALLLTGN 304 (323)
T ss_pred hhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeE-cccccccccCchheEEECC
Confidence 0123679999999999999 67787 6899998888763
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1e-36 Score=260.82 Aligned_cols=253 Identities=21% Similarity=0.299 Sum_probs=194.2
Q ss_pred ceeeecccccccccceE------EEEeCccCcCCCCcccceeeceEEEEeCC--CCCeeeCCCCC-CCccceeeEEECCE
Q psy9754 30 TYDLSIERVSQRYDVKI------NSLAGGVDPSSDEKTTDIVSNSVWSFNPN--NKQWTQEPNMT-YPRKIFSFVSCLDK 100 (306)
Q Consensus 30 ~W~~~~~~p~~r~~~~~------i~v~GG~~~~~~~~~~~~~~~~~~~~d~~--t~~W~~~~~~~-~~~~~~~~~~~~~~ 100 (306)
.++.+++||.++..+++ |||+||... +.+++||+. +++|..++++| .+|..++++.++++
T Consensus 18 ~~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~-----------~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~ 86 (376)
T PRK14131 18 NAEQLPDLPVPFKNGTGAIDNNTVYVGLGSAG-----------TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGK 86 (376)
T ss_pred ecccCCCCCcCccCCeEEEECCEEEEEeCCCC-----------CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCE
Confidence 46788999998776655 999999632 347888886 47899999988 58999999999999
Q ss_pred EEEEccCCC-C-----CCCceeEEEeCCCCcEEeccC-CcccccceeeEE-ECCEEEEEcccCCCCC-------------
Q psy9754 101 IYAIGGQDC-K-----TLLSSVECYDPVAHTWEDVAP-LKIARMGMAVAE-INDKIWIAGGYTGDKM------------- 159 (306)
Q Consensus 101 iyv~GG~~~-~-----~~~~~~~~~d~~~~~w~~~~~-~~~~~~~~~~~~-~~~~iyv~GG~~~~~~------------- 159 (306)
||++||... . ..++++++||+.+++|+++++ .|..+.+|++++ .+++||++||......
T Consensus 87 IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~ 166 (376)
T PRK14131 87 LYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKD 166 (376)
T ss_pred EEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccc
Confidence 999999764 1 346789999999999999986 466777777766 8999999999753100
Q ss_pred ------------------CCCCccEEEEeCCCCeeEEcccccCC-cceeEEEEEEeCCEEEEEcCCCCCCCCCccccccc
Q psy9754 160 ------------------NPVTDKVECYDPRTNTWTTLATKLRY-PRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSV 220 (306)
Q Consensus 160 ------------------~~~~~~~~~~d~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~ 220 (306)
..+.+.+++||+.+++|+.+ +++|. +|..++++.++ ++||++||....... .
T Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~-~~~p~~~~~~~a~v~~~-~~iYv~GG~~~~~~~-------~ 237 (376)
T PRK14131 167 KTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNA-GESPFLGTAGSAVVIKG-NKLWLINGEIKPGLR-------T 237 (376)
T ss_pred hhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeEC-CcCCCCCCCcceEEEEC-CEEEEEeeeECCCcC-------C
Confidence 01247899999999999999 67775 67777777777 999999997432211 1
Q ss_pred ceee--EEECCCCceEecccCCccccc--------ceeeeeCCEEEEEeCccCccc---------------cccceEEEe
Q psy9754 221 SDLD--VFVSNEKEWKFVTELVVPRHA--------HSASVLSSQILIIGGVTTVYK---------------RTLKSVECW 275 (306)
Q Consensus 221 ~~~~--~y~~~~~~W~~~~~~p~~~~~--------~~~~~~~~~i~v~GG~~~~~~---------------~~~~~~~~y 275 (306)
.+++ .||+++++|+.++.+|.+|.. +.++.++++||++||.+.... ..+..+++|
T Consensus 238 ~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y 317 (376)
T PRK14131 238 DAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIY 317 (376)
T ss_pred hhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheE
Confidence 3333 457788999999999877632 224567999999999764210 112357899
Q ss_pred eccccceeccCCCCcccccceeeEEecC
Q psy9754 276 CFDRQAWIKGVSGLPATILGHSSVALPL 303 (306)
Q Consensus 276 d~~~~~W~~~~~~~p~~r~~~~~~~~~~ 303 (306)
|+++++|+. ++.||.+|..++++++..
T Consensus 318 d~~~~~W~~-~~~lp~~r~~~~av~~~~ 344 (376)
T PRK14131 318 ALVNGKWQK-VGELPQGLAYGVSVSWNN 344 (376)
T ss_pred EecCCcccc-cCcCCCCccceEEEEeCC
Confidence 999999998 789999999999887764
No 17
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=270.90 Aligned_cols=223 Identities=26% Similarity=0.473 Sum_probs=191.3
Q ss_pred cccceeEEecccccce--eEEEEEEeec--CceeeecccccccccceE------EEEeCccCcCCCCcccceeeceEEEE
Q psy9754 3 EIWDWELICKEGTEGI--KLLVIWIMDI--VTYDLSIERVSQRYDVKI------NSLAGGVDPSSDEKTTDIVSNSVWSF 72 (306)
Q Consensus 3 ~~~~~~l~~~gG~~~~--~~~~~~~~~~--~~W~~~~~~p~~r~~~~~------i~v~GG~~~~~~~~~~~~~~~~~~~~ 72 (306)
++.++.||++||.... ...+++.||+ ++|..++++|.+|.++++ ||++||..... ..+++++|
T Consensus 291 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~-------~~~~v~~y 363 (534)
T PHA03098 291 VVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSI-------SLNTVESW 363 (534)
T ss_pred EEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCE-------ecceEEEE
Confidence 4568899999998543 3458999999 789999999999999888 99999987322 57899999
Q ss_pred eCCCCCeeeCCCCCCCccceeeEEECCEEEEEccCCCC-CCCceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEE
Q psy9754 73 NPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCK-TLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIA 151 (306)
Q Consensus 73 d~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~ 151 (306)
|+.+++|+.++++|.+|..++++.++++||++||.... ..++++++||+.+++|+.++++|.+|.+++++.++++||++
T Consensus 364 d~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 364 KPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVI 443 (534)
T ss_pred cCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEE
Confidence 99999999999999999999999999999999997543 45688999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCC
Q psy9754 152 GGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEK 231 (306)
Q Consensus 152 GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~ 231 (306)
||..........+.+++||+++++|+.+ +.++.+|..++++..+ ++||++||...... .+++++||++++
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~--------~~~v~~yd~~~~ 513 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTEL-SSLNFPRINASLCIFN-NKIYVVGGDKYEYY--------INEIEVYDDKTN 513 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeC-CCCCcccccceEEEEC-CEEEEEcCCcCCcc--------cceeEEEeCCCC
Confidence 9976543222246799999999999999 7888889888888887 99999999875432 378999999999
Q ss_pred ceEecccCCcc
Q psy9754 232 EWKFVTELVVP 242 (306)
Q Consensus 232 ~W~~~~~~p~~ 242 (306)
+|+.+..+|..
T Consensus 514 ~W~~~~~~p~~ 524 (534)
T PHA03098 514 TWTLFCKFPKV 524 (534)
T ss_pred EEEecCCCccc
Confidence 99999876654
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=259.23 Aligned_cols=200 Identities=20% Similarity=0.261 Sum_probs=174.9
Q ss_pred cceeEEecccccc-eeEEEEEEeec--CceeeecccccccccceE------EEEeCccCcCCCCcccceeeceEEEEeCC
Q psy9754 5 WDWELICKEGTEG-IKLLVIWIMDI--VTYDLSIERVSQRYDVKI------NSLAGGVDPSSDEKTTDIVSNSVWSFNPN 75 (306)
Q Consensus 5 ~~~~l~~~gG~~~-~~~~~~~~~~~--~~W~~~~~~p~~r~~~~~------i~v~GG~~~~~~~~~~~~~~~~~~~~d~~ 75 (306)
.++.||+.||.++ .....++.||| ++|..+++||.+|..+++ ||++||... .+.+++||+.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~----------~~sve~ydp~ 339 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN----------PTSVERWFHG 339 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC----------CCceEEEECC
Confidence 6789999999754 33457899999 789999999999988776 999999752 2568999999
Q ss_pred CCCeeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccC
Q psy9754 76 NKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYT 155 (306)
Q Consensus 76 t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~ 155 (306)
+++|..+++||.+|..+++++++++||++||.... ...+++|||.+++|+.+++|+.+|..+++++++++||++||.
T Consensus 340 ~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~- 416 (480)
T PHA02790 340 DAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN- 416 (480)
T ss_pred CCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc-
Confidence 99999999999999999999999999999997543 367899999999999999999999999999999999999972
Q ss_pred CCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEe
Q psy9754 156 GDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKF 235 (306)
Q Consensus 156 ~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~ 235 (306)
+++||+++++|+.+ ++++.+|..+++++++ ++||++||.+... ....+++||+.+++|+.
T Consensus 417 ----------~e~ydp~~~~W~~~-~~m~~~r~~~~~~v~~-~~IYviGG~~~~~--------~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 417 ----------AEFYCESSNTWTLI-DDPIYPRDNPELIIVD-NKLLLIGGFYRGS--------YIDTIEVYNNRTYSWNI 476 (480)
T ss_pred ----------eEEecCCCCcEeEc-CCCCCCccccEEEEEC-CEEEEECCcCCCc--------ccceEEEEECCCCeEEe
Confidence 57899999999999 8889999999998888 9999999976322 13679999999999986
Q ss_pred cc
Q psy9754 236 VT 237 (306)
Q Consensus 236 ~~ 237 (306)
..
T Consensus 477 ~~ 478 (480)
T PHA02790 477 WD 478 (480)
T ss_pred cC
Confidence 53
No 19
>KOG4693|consensus
Probab=100.00 E-value=2e-35 Score=225.62 Aligned_cols=246 Identities=17% Similarity=0.287 Sum_probs=203.9
Q ss_pred cceeEEecccc------cceeEEEEEEeec--Cceeeecc-------------cccccccceE------EEEeCccCcCC
Q psy9754 5 WDWELICKEGT------EGIKLLVIWIMDI--VTYDLSIE-------------RVSQRYDVKI------NSLAGGVDPSS 57 (306)
Q Consensus 5 ~~~~l~~~gG~------~~~~~~~~~~~~~--~~W~~~~~-------------~p~~r~~~~~------i~v~GG~~~~~ 57 (306)
++..||.|||+ +...-.++..++. -+|.++++ .|..|++|++ +||.||.+..+
T Consensus 22 VG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~e 101 (392)
T KOG4693|consen 22 VGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDE 101 (392)
T ss_pred ecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcc
Confidence 47789999996 2233446777777 58988755 5567999998 99999998866
Q ss_pred CCcccceeeceEEEEeCCCCCeeeC---CCCCCCccceeeEEECCEEEEEccCCCC--CCCceeEEEeCCCCcEEec---
Q psy9754 58 DEKTTDIVSNSVWSFNPNNKQWTQE---PNMTYPRKIFSFVSCLDKIYAIGGQDCK--TLLSSVECYDPVAHTWEDV--- 129 (306)
Q Consensus 58 ~~~~~~~~~~~~~~~d~~t~~W~~~---~~~~~~~~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~~d~~~~~w~~~--- 129 (306)
. ..+.++.|||++++|.+. +.+|.+|..|++|+.++.+|||||+.++ ..++++..+|..+.+|+.+
T Consensus 102 g------aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tk 175 (392)
T KOG4693|consen 102 G------ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTK 175 (392)
T ss_pred c------ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhcc
Confidence 4 688999999999999765 5678999999999999999999999776 7789999999999999987
Q ss_pred cCCcccccceeeEEECCEEEEEcccCCCCCC------CCCccEEEEeCCCCeeEEccc--ccCCcceeEEEEEEeCCEEE
Q psy9754 130 APLKIARMGMAVAEINDKIWIAGGYTGDKMN------PVTDKVECYDPRTNTWTTLAT--KLRYPRYLATLVSVNNEKLY 201 (306)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~------~~~~~~~~~d~~~~~W~~~~~--~~~~~~~~~~~~~~~~~~iy 201 (306)
.+.|.-|..|++.++++++|||||..+.... ...+.+..+|+.|..|...++ ..|..|..|++.+.+ ++||
T Consensus 176 g~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYn-g~~Y 254 (392)
T KOG4693|consen 176 GDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYN-GKMY 254 (392)
T ss_pred CCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEc-ceEE
Confidence 4556778899999999999999998654321 124788999999999998742 346778889999998 9999
Q ss_pred EEcCCCCCCCCCcccccccceeeEEECCCCceEecc---cCCcccccceeeeeCCEEEEEeCccC
Q psy9754 202 IIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVT---ELVVPRHAHSASVLSSQILIIGGVTT 263 (306)
Q Consensus 202 i~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~---~~p~~~~~~~~~~~~~~i~v~GG~~~ 263 (306)
+|||++..-. .-.++++.||+.+..|+.+. .-|.+|..+++++.++++|+|||...
T Consensus 255 ~FGGYng~ln------~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 255 MFGGYNGTLN------VHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred Eecccchhhh------hhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 9999864322 23578999999999999886 56889999999999999999999765
No 20
>KOG4693|consensus
Probab=100.00 E-value=5.5e-35 Score=223.22 Aligned_cols=268 Identities=21% Similarity=0.298 Sum_probs=212.7
Q ss_pred ceee-ecccccccccceE------EEEeCccCcCCCCcccceeeceEEEEeCCCCCeeeCCC-------------CCCCc
Q psy9754 30 TYDL-SIERVSQRYDVKI------NSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPN-------------MTYPR 89 (306)
Q Consensus 30 ~W~~-~~~~p~~r~~~~~------i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W~~~~~-------------~~~~~ 89 (306)
+|+. +..-| .|-.|++ ||.|||+-..+...-+ -.-++..+|.++-+|.++++ .|..|
T Consensus 3 ~WTVHLeGGP-rRVNHAavaVG~riYSFGGYCsGedy~~~--~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqR 79 (392)
T KOG4693|consen 3 TWTVHLEGGP-RRVNHAAVAVGSRIYSFGGYCSGEDYDAK--DPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQR 79 (392)
T ss_pred eEEEEecCCc-ccccceeeeecceEEecCCcccccccccC--CcceeEEeeccceeEEecCcccccccccCCCCccchhh
Confidence 4654 33333 3455555 9999997433321100 13478899999999998864 24569
Q ss_pred cceeeEEECCEEEEEccCCCC-CCCceeEEEeCCCCcEEec---cCCcccccceeeEEECCEEEEEcccCCCCCCCCCcc
Q psy9754 90 KIFSFVSCLDKIYAIGGQDCK-TLLSSVECYDPVAHTWEDV---APLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDK 165 (306)
Q Consensus 90 ~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~w~~~---~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 165 (306)
+.|.++.+++++|+.||...+ ..-+.++.||+++++|.+. .-.|.+|.+|.+|+.++.+|||||+..+.. .++++
T Consensus 80 YGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~-~FS~d 158 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQ-RFSQD 158 (392)
T ss_pred cCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHH-hhhcc
Confidence 999999999999999998774 5668899999999999875 346889999999999999999999876543 36789
Q ss_pred EEEEeCCCCeeEEccc--ccCCcceeEEEEEEeCCEEEEEcCCCCCCC-CCcccccccceeeEEECCCCceEeccc---C
Q psy9754 166 VECYDPRTNTWTTLAT--KLRYPRYLATLVSVNNEKLYIIGGASQTDA-TNTQKMYSVSDLDVFVSNEKEWKFVTE---L 239 (306)
Q Consensus 166 ~~~~d~~~~~W~~~~~--~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~-~~~~~~~~~~~~~~y~~~~~~W~~~~~---~ 239 (306)
++++|..|.+|+.+.. .+|.=|-+|++.+++ +.+|||||...... ........+..+..+|..++.|...++ .
T Consensus 159 ~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~-~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~ 237 (392)
T KOG4693|consen 159 THVLDFATMTWREMHTKGDPPRWRDFHTASVID-GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMK 237 (392)
T ss_pred ceeEeccceeeeehhccCCCchhhhhhhhhhcc-ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcC
Confidence 9999999999999853 334446678888888 99999999865443 234444567889999999999996653 4
Q ss_pred CcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccceecc--CCCCcccccceeeEEec
Q psy9754 240 VVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKG--VSGLPATILGHSSVALP 302 (306)
Q Consensus 240 p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~--~~~~p~~r~~~~~~~~~ 302 (306)
|.+|..|++...+++||+|||.+..-+...+++|+|||.+..|..+ .+.-|.+|+++++|+.-
T Consensus 238 P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g 302 (392)
T KOG4693|consen 238 PGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSG 302 (392)
T ss_pred CCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEEC
Confidence 7789999999999999999999976667789999999999999765 56689999999999875
No 21
>KOG0379|consensus
Probab=99.98 E-value=1.6e-30 Score=227.44 Aligned_cols=254 Identities=24% Similarity=0.384 Sum_probs=214.1
Q ss_pred ecccccccccceE------EEEeCccCcCCCCcccceeec--eEEEEeCCCCCeeeC---CCCCCCccceeeEEECCEEE
Q psy9754 34 SIERVSQRYDVKI------NSLAGGVDPSSDEKTTDIVSN--SVWSFNPNNKQWTQE---PNMTYPRKIFSFVSCLDKIY 102 (306)
Q Consensus 34 ~~~~p~~r~~~~~------i~v~GG~~~~~~~~~~~~~~~--~~~~~d~~t~~W~~~---~~~~~~~~~~~~~~~~~~iy 102 (306)
....|.+|..|++ +|||||...... .. ++|++|.++..|... ...|.+|..|.++.++++||
T Consensus 54 ~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~-------~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~ 126 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLIGNKLYVFGGYGSGDR-------LTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLY 126 (482)
T ss_pred CCCCcchhhccceeEECCEEEEECCCCCCCc-------cccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEE
Confidence 3557788999998 999999876543 23 599999999999765 45678999999999999999
Q ss_pred EEccCCC-CCCCceeEEEeCCCCcEEecc---CCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEE
Q psy9754 103 AIGGQDC-KTLLSSVECYDPVAHTWEDVA---PLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTT 178 (306)
Q Consensus 103 v~GG~~~-~~~~~~~~~~d~~~~~w~~~~---~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~ 178 (306)
+|||... .....+++.||+.+++|+.+. ..|.+|.+|+++++++++|||||...... ..+++++||+++.+|.+
T Consensus 127 lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~--~~ndl~i~d~~~~~W~~ 204 (482)
T KOG0379|consen 127 LFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD--SLNDLHIYDLETSTWSE 204 (482)
T ss_pred EEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc--ceeeeeeecccccccee
Confidence 9999985 466789999999999999874 45789999999999999999999887664 37999999999999999
Q ss_pred cc--cccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecc---cCCcccccceeeeeCC
Q psy9754 179 LA--TKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVT---ELVVPRHAHSASVLSS 253 (306)
Q Consensus 179 ~~--~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~---~~p~~~~~~~~~~~~~ 253 (306)
+. ...|.||.+|++++++ ++++++||.+..+ ..+++++++|+.+.+|..+. ..|.+|..|.++..+.
T Consensus 205 ~~~~g~~P~pR~gH~~~~~~-~~~~v~gG~~~~~-------~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~ 276 (482)
T KOG0379|consen 205 LDTQGEAPSPRYGHAMVVVG-NKLLVFGGGDDGD-------VYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGD 276 (482)
T ss_pred cccCCCCCCCCCCceEEEEC-CeEEEEeccccCC-------ceecceEeeecccceeeeccccCCCCCCcceeeeEEECC
Confidence 84 4567899999999999 8999999887332 35789999999999999664 6789999999998899
Q ss_pred EEEEEeCccCccccccceEEEeeccccceeccC--C-CCcccccceeeEEecCC
Q psy9754 254 QILIIGGVTTVYKRTLKSVECWCFDRQAWIKGV--S-GLPATILGHSSVALPLK 304 (306)
Q Consensus 254 ~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~--~-~~p~~r~~~~~~~~~~~ 304 (306)
+++++||........+.++|.|+.+++.|+.+. . ..|.+|..|+++.+...
T Consensus 277 ~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (482)
T KOG0379|consen 277 HLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDEL 330 (482)
T ss_pred EEEEEcCCcccccccccccccccccccceeeeeccccccccccccccceeeccC
Confidence 999999988642236789999999999998763 3 45888999998887643
No 22
>KOG1230|consensus
Probab=99.97 E-value=6.8e-31 Score=211.98 Aligned_cols=247 Identities=20% Similarity=0.331 Sum_probs=196.6
Q ss_pred ccccccccceE--------EEEeCccCcCCCCcccceeeceEEEEeCCCCCeeeC--CCCCCCccceeeEEE-CCEEEEE
Q psy9754 36 ERVSQRYDVKI--------NSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQE--PNMTYPRKIFSFVSC-LDKIYAI 104 (306)
Q Consensus 36 ~~p~~r~~~~~--------i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W~~~--~~~~~~~~~~~~~~~-~~~iyv~ 104 (306)
+.|.||.+.++ |++|||...+.+ +-..++++|+||.+++.|+.+ +..|.||..|.++++ .+.+|+|
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngq---kT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~f 138 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQ---KTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLF 138 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecce---eEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEe
Confidence 45678888877 999999765432 223789999999999999987 566889999999988 4899999
Q ss_pred ccCCCC------CCCceeEEEeCCCCcEEecc--CCcccccceeeEEECCEEEEEcccCCCCC-CCCCccEEEEeCCCCe
Q psy9754 105 GGQDCK------TLLSSVECYDPVAHTWEDVA--PLKIARMGMAVAEINDKIWIAGGYTGDKM-NPVTDKVECYDPRTNT 175 (306)
Q Consensus 105 GG~~~~------~~~~~~~~~d~~~~~w~~~~--~~~~~~~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~~~~d~~~~~ 175 (306)
||--.. ...+++|+||..+++|+++. --|.+|++|.+++...+|++|||+-+... ....+++++||+.+-+
T Consensus 139 GGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtyk 218 (521)
T KOG1230|consen 139 GGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYK 218 (521)
T ss_pred ccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecccee
Confidence 996443 45689999999999999985 35689999999999999999999754432 2346899999999999
Q ss_pred eEEccccc--CCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccc-cccceeeEEECCC-----CceEeccc---CCcccc
Q psy9754 176 WTTLATKL--RYPRYLATLVSVNNEKLYIIGGASQTDATNTQKM-YSVSDLDVFVSNE-----KEWKFVTE---LVVPRH 244 (306)
Q Consensus 176 W~~~~~~~--~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~-~~~~~~~~y~~~~-----~~W~~~~~---~p~~~~ 244 (306)
|+++.+.- |.||+++.+++..++.||+.||++.......... ....+++.+++.. -.|+++.+ .|.+|.
T Consensus 219 W~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRs 298 (521)
T KOG1230|consen 219 WSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRS 298 (521)
T ss_pred eeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCC
Confidence 99996544 7899999999996799999999875442211111 1246889999887 45777764 488999
Q ss_pred cceeeee-CCEEEEEeCccCc-------cccccceEEEeeccccceecc
Q psy9754 245 AHSASVL-SSQILIIGGVTTV-------YKRTLKSVECWCFDRQAWIKG 285 (306)
Q Consensus 245 ~~~~~~~-~~~i~v~GG~~~~-------~~~~~~~~~~yd~~~~~W~~~ 285 (306)
++++++. +++-|.|||.... ...+.+++|.||+..++|..+
T Consensus 299 gfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 299 GFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred ceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 9998887 7799999998652 124779999999999999663
No 23
>KOG4152|consensus
Probab=99.96 E-value=2.5e-28 Score=202.28 Aligned_cols=257 Identities=21% Similarity=0.365 Sum_probs=205.8
Q ss_pred Cceeee----cccccccccceE------EEEeCccCcCCCCcccceeeceEEEEeCCCCCeee---CCCCCCCccceeeE
Q psy9754 29 VTYDLS----IERVSQRYDVKI------NSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQ---EPNMTYPRKIFSFV 95 (306)
Q Consensus 29 ~~W~~~----~~~p~~r~~~~~------i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W~~---~~~~~~~~~~~~~~ 95 (306)
-+|..+ ++.|.||-+|.+ |++|||.++. ..+++..||..+++|.. .++.|.+.+.|..+
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG--------iiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfv 88 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG--------IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFV 88 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCccc--------chhhhhhhccccceeecchhcCCCCCchhhcceE
Confidence 468765 778888988887 8999998765 57899999999999964 47888888889988
Q ss_pred EECCEEEEEccCCCC-CCCceeEEEeCCCCcEEeccC-------CcccccceeeEEECCEEEEEcccCCCCCCC------
Q psy9754 96 SCLDKIYAIGGQDCK-TLLSSVECYDPVAHTWEDVAP-------LKIARMGMAVAEINDKIWIAGGYTGDKMNP------ 161 (306)
Q Consensus 96 ~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~w~~~~~-------~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~------ 161 (306)
..+.+||+|||..+- ++.+++|.+....-.|+++.+ +|.+|.+|...+++++-|+|||..++.+++
T Consensus 89 cdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPr 168 (830)
T KOG4152|consen 89 CDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPR 168 (830)
T ss_pred ecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccch
Confidence 889999999997664 677777766555666777743 567899999999999999999976554442
Q ss_pred CCccEEEEeCCCCe----eEEcc--cccCCcceeEEEEEEe-----CCEEEEEcCCCCCCCCCcccccccceeeEEECCC
Q psy9754 162 VTDKVECYDPRTNT----WTTLA--TKLRYPRYLATLVSVN-----NEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNE 230 (306)
Q Consensus 162 ~~~~~~~~d~~~~~----W~~~~--~~~~~~~~~~~~~~~~-----~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~ 230 (306)
.++++|+.++...+ |...- ...|.+|..|+++... ..++|++||++.-. +.++|.+|+++
T Consensus 169 YLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R---------LgDLW~Ldl~T 239 (830)
T KOG4152|consen 169 YLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR---------LGDLWTLDLDT 239 (830)
T ss_pred hhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc---------ccceeEEecce
Confidence 46889999887554 87653 5678889988888873 25799999998653 57899999999
Q ss_pred CceEecc---cCCcccccceeeeeCCEEEEEeCccCcc----------c--cccceEEEeeccccceeccC------CCC
Q psy9754 231 KEWKFVT---ELVVPRHAHSASVLSSQILIIGGVTTVY----------K--RTLKSVECWCFDRQAWIKGV------SGL 289 (306)
Q Consensus 231 ~~W~~~~---~~p~~~~~~~~~~~~~~i~v~GG~~~~~----------~--~~~~~~~~yd~~~~~W~~~~------~~~ 289 (306)
.+|.+.. ..|.+|..|++..++++||||||....- . ...+++-++++++..|+.++ ..+
T Consensus 240 l~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~ti 319 (830)
T KOG4152|consen 240 LTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTI 319 (830)
T ss_pred eecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccccccc
Confidence 9999765 5688999999999999999999964311 0 25578889999999998763 238
Q ss_pred cccccceeeEEec
Q psy9754 290 PATILGHSSVALP 302 (306)
Q Consensus 290 p~~r~~~~~~~~~ 302 (306)
|-+|.+|+|+.+-
T Consensus 320 PR~RAGHCAvAig 332 (830)
T KOG4152|consen 320 PRARAGHCAVAIG 332 (830)
T ss_pred ccccccceeEEec
Confidence 9999999999875
No 24
>KOG4152|consensus
Probab=99.96 E-value=2.7e-28 Score=202.11 Aligned_cols=250 Identities=16% Similarity=0.225 Sum_probs=200.2
Q ss_pred ccceeEEecccccceeEEEEEEeec--Cceee---ecccccccccceE------EEEeCccCcCCCCcccceeeceEEEE
Q psy9754 4 IWDWELICKEGTEGIKLLVIWIMDI--VTYDL---SIERVSQRYDVKI------NSLAGGVDPSSDEKTTDIVSNSVWSF 72 (306)
Q Consensus 4 ~~~~~l~~~gG~~~~~~~~~~~~~~--~~W~~---~~~~p~~r~~~~~------i~v~GG~~~~~~~~~~~~~~~~~~~~ 72 (306)
.+..-+++|||.+.+...++..|+. +.|.. -+++|.+-..+.+ ||+|||+.+... +++++|.+
T Consensus 40 aikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGk------YsNdLYEL 113 (830)
T KOG4152|consen 40 AIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGK------YSNDLYEL 113 (830)
T ss_pred eeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeecc------ccchHHHh
Confidence 3566789999999988889999999 78953 3777776666655 999999977653 67777666
Q ss_pred eCCCCCeeeC-------CCCCCCccceeeEEECCEEEEEccCCCC---------CCCceeEEEeCCCCc----EEec---
Q psy9754 73 NPNNKQWTQE-------PNMTYPRKIFSFVSCLDKIYAIGGQDCK---------TLLSSVECYDPVAHT----WEDV--- 129 (306)
Q Consensus 73 d~~t~~W~~~-------~~~~~~~~~~~~~~~~~~iyv~GG~~~~---------~~~~~~~~~d~~~~~----w~~~--- 129 (306)
-...-.|+++ +++|.||-.|+...+++|.|+|||..++ .+++++|+.++..+. |+..
T Consensus 114 QasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~ 193 (830)
T KOG4152|consen 114 QASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITY 193 (830)
T ss_pred hhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEeccccc
Confidence 5555556665 3567899999999999999999998664 678999998887554 8764
Q ss_pred cCCcccccceeeEEE------CCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcc--cccCCcceeEEEEEEeCCEEE
Q psy9754 130 APLKIARMGMAVAEI------NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLA--TKLRYPRYLATLVSVNNEKLY 201 (306)
Q Consensus 130 ~~~~~~~~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~iy 201 (306)
..+|.+|..|+++.+ ..++||+||.++-. +++++.+|+++.+|.+.. ...|.||.-|++..++ +++|
T Consensus 194 Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R----LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IG-nKMy 268 (830)
T KOG4152|consen 194 GVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR----LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIG-NKMY 268 (830)
T ss_pred CCCCCCcccceeEEEEeccCCcceEEEEccccccc----ccceeEEecceeecccccccCCCCCCcccccceeec-ceeE
Confidence 567899999999887 24899999998765 689999999999998864 4568999999999999 9999
Q ss_pred EEcCCCCCCCC------CcccccccceeeEEECCCCceEecc-------cCCcccccceeeeeCCEEEEEeCccCc
Q psy9754 202 IIGGASQTDAT------NTQKMYSVSDLDVFVSNEKEWKFVT-------ELVVPRHAHSASVLSSQILIIGGVTTV 264 (306)
Q Consensus 202 i~GG~~~~~~~------~~~~~~~~~~~~~y~~~~~~W~~~~-------~~p~~~~~~~~~~~~~~i~v~GG~~~~ 264 (306)
+|||+...... .......++.+-+++++++.|+.+- ..|.+|.+|+++.++.+||+-.|.++-
T Consensus 269 vfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGY 344 (830)
T KOG4152|consen 269 VFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGY 344 (830)
T ss_pred EecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchh
Confidence 99997422211 1334456778899999999999553 368889999999999999999998863
No 25
>KOG0379|consensus
Probab=99.96 E-value=5.3e-27 Score=205.36 Aligned_cols=210 Identities=25% Similarity=0.356 Sum_probs=179.7
Q ss_pred CCCCCCCccceeeEEECCEEEEEccCCCCCCCce--eEEEeCCCCcEEecc---CCcccccceeeEEECCEEEEEcccCC
Q psy9754 82 EPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSS--VECYDPVAHTWEDVA---PLKIARMGMAVAEINDKIWIAGGYTG 156 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~--~~~~d~~~~~w~~~~---~~~~~~~~~~~~~~~~~iyv~GG~~~ 156 (306)
....|.+|+.|+++.+++++||+||......... ++++|..+..|.... ..|.+|.+|.++.++++||+|||...
T Consensus 54 ~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~ 133 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK 133 (482)
T ss_pred CCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC
Confidence 4556889999999999999999999887755555 999999999998763 45689999999999999999999886
Q ss_pred CCCCCCCccEEEEeCCCCeeEEcc--cccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceE
Q psy9754 157 DKMNPVTDKVECYDPRTNTWTTLA--TKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWK 234 (306)
Q Consensus 157 ~~~~~~~~~~~~~d~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~ 234 (306)
.... .++++.||+.+.+|..+. ..+|.+|.+|++++++ ++|||+||...... ..+++++||+++.+|.
T Consensus 134 ~~~~--~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~-------~~ndl~i~d~~~~~W~ 203 (482)
T KOG0379|consen 134 KYRN--LNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGD-------SLNDLHIYDLETSTWS 203 (482)
T ss_pred CCCC--hhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCccc-------ceeeeeeeccccccce
Confidence 3332 689999999999998874 3468899999999999 99999999876542 3689999999999999
Q ss_pred ecc---cCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccceeccC--CCCcccccceeeEEec
Q psy9754 235 FVT---ELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGV--SGLPATILGHSSVALP 302 (306)
Q Consensus 235 ~~~---~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~--~~~p~~r~~~~~~~~~ 302 (306)
++. +.|.+|.+|+++..+++++++||.. .....++++|++|+.+.+|..+. ..+|.+|.+|+.++..
T Consensus 204 ~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~-~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~ 275 (482)
T KOG0379|consen 204 ELDTQGEAPSPRYGHAMVVVGNKLLVFGGGD-DGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSG 275 (482)
T ss_pred ecccCCCCCCCCCCceEEEECCeEEEEeccc-cCCceecceEeeecccceeeeccccCCCCCCcceeeeEEEC
Confidence 876 5588999999999999999999988 23467899999999999998654 7789999999999654
No 26
>KOG1230|consensus
Probab=99.95 E-value=1.8e-27 Score=192.33 Aligned_cols=229 Identities=19% Similarity=0.265 Sum_probs=181.4
Q ss_pred eeEEecccc--ccee---EEEEEEeec--Cceeee--cccccccccceE-------EEEeCccCcCCCCcccceeeceEE
Q psy9754 7 WELICKEGT--EGIK---LLVIWIMDI--VTYDLS--IERVSQRYDVKI-------NSLAGGVDPSSDEKTTDIVSNSVW 70 (306)
Q Consensus 7 ~~l~~~gG~--~~~~---~~~~~~~~~--~~W~~~--~~~p~~r~~~~~-------i~v~GG~~~~~~~~~~~~~~~~~~ 70 (306)
+.|++|||. ++.. +.+++.|+. +.|..+ +..|.||+.|++ +++|||.... .++...-.++++|
T Consensus 79 eELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaS-Pnq~qF~HYkD~W 157 (521)
T KOG1230|consen 79 EELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFAS-PNQEQFHHYKDLW 157 (521)
T ss_pred ceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCC-cchhhhhhhhhee
Confidence 489999995 5443 448999999 789875 888889999998 8999996432 2233444688999
Q ss_pred EEeCCCCCeeeCC--CCCCCccceeeEEECCEEEEEccCCCC----CCCceeEEEeCCCCcEEeccC---Ccccccceee
Q psy9754 71 SFNPNNKQWTQEP--NMTYPRKIFSFVSCLDKIYAIGGQDCK----TLLSSVECYDPVAHTWEDVAP---LKIARMGMAV 141 (306)
Q Consensus 71 ~~d~~t~~W~~~~--~~~~~~~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d~~~~~w~~~~~---~~~~~~~~~~ 141 (306)
.||+.+++|+++. --|.+|.+|.+++...+|++|||.... .+.+++|+||+.+-+|+++.+ -|.+|+++..
T Consensus 158 ~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~ 237 (521)
T KOG1230|consen 158 LFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQF 237 (521)
T ss_pred eeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceE
Confidence 9999999999884 458889999999999999999998654 678999999999999999855 3689999999
Q ss_pred EEE-CCEEEEEcccCCCCCC------CCCccEEEEeCCC-----CeeEEcc--cccCCcceeEEEEEEeCCEEEEEcCCC
Q psy9754 142 AEI-NDKIWIAGGYTGDKMN------PVTDKVECYDPRT-----NTWTTLA--TKLRYPRYLATLVSVNNEKLYIIGGAS 207 (306)
Q Consensus 142 ~~~-~~~iyv~GG~~~~~~~------~~~~~~~~~d~~~-----~~W~~~~--~~~~~~~~~~~~~~~~~~~iyi~GG~~ 207 (306)
.+. ++.|||.||++..... ...++++.+++.+ ..|+++. ...|.||.+.++++..+++-+.|||..
T Consensus 238 ~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~ 317 (521)
T KOG1230|consen 238 SVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVC 317 (521)
T ss_pred EecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEeccee
Confidence 888 8999999998633211 1257889999998 6799883 335789999888888878999999987
Q ss_pred CCCCC-CcccccccceeeEEECCCCceEec
Q psy9754 208 QTDAT-NTQKMYSVSDLDVFVSNEKEWKFV 236 (306)
Q Consensus 208 ~~~~~-~~~~~~~~~~~~~y~~~~~~W~~~ 236 (306)
..... -.-.....++++.||+..++|...
T Consensus 318 D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 318 DLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred cccccchhhhhhhhhhhhheecccchhhHh
Confidence 52211 111223567899999999999844
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.88 E-value=1e-20 Score=151.26 Aligned_cols=267 Identities=20% Similarity=0.251 Sum_probs=186.8
Q ss_pred cccceeEEecccccceeEEEEEEeec-CceeeecccccccccceE-------EEEeCccCcCCCCcccceeeceEEEEeC
Q psy9754 3 EIWDWELICKEGTEGIKLLVIWIMDI-VTYDLSIERVSQRYDVKI-------NSLAGGVDPSSDEKTTDIVSNSVWSFNP 74 (306)
Q Consensus 3 ~~~~~~l~~~gG~~~~~~~~~~~~~~-~~W~~~~~~p~~r~~~~~-------i~v~GG~~~~~~~~~~~~~~~~~~~~d~ 74 (306)
+++++.+||.=|..++++-.+..-++ ..|+.++.+|.+....++ ||||||.-.... +..+..+++++|||
T Consensus 43 a~ig~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~--~~~~~~nd~Y~y~p 120 (381)
T COG3055 43 ALIGDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVS--SSPQVFNDAYRYDP 120 (381)
T ss_pred ceecceEEEEeccCCccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCC--CCceEeeeeEEecC
Confidence 57888999999988887644444444 789999999986555555 999999865544 33558999999999
Q ss_pred CCCCeeeCCC-CCCCccceeeEEECC-EEEEEccCCCC----------------------------------CCCceeEE
Q psy9754 75 NNKQWTQEPN-MTYPRKIFSFVSCLD-KIYAIGGQDCK----------------------------------TLLSSVEC 118 (306)
Q Consensus 75 ~t~~W~~~~~-~~~~~~~~~~~~~~~-~iyv~GG~~~~----------------------------------~~~~~~~~ 118 (306)
.+++|+++.. .|.....+.++.+++ +||++||.... .....+..
T Consensus 121 ~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~s 200 (381)
T COG3055 121 STNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLS 200 (381)
T ss_pred CCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccc
Confidence 9999999864 366677788888877 99999997532 23455678
Q ss_pred EeCCCCcEEeccCCcc-cccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeC--CCCeeEEcccccCCcceeE-----
Q psy9754 119 YDPVAHTWEDVAPLKI-ARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDP--RTNTWTTLATKLRYPRYLA----- 190 (306)
Q Consensus 119 ~d~~~~~w~~~~~~~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~--~~~~W~~~~~~~~~~~~~~----- 190 (306)
|+|.+++|+.+...|. .+.+++++.-++++.++-|.....-+ +..+.+++. ...+|..+ +++|.+....
T Consensus 201 y~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLR--t~~~k~~~~~~~~~~w~~l-~~lp~~~~~~~eGvA 277 (381)
T COG3055 201 YDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLR--TAEVKQADFGGDNLKWLKL-SDLPAPIGSNKEGVA 277 (381)
T ss_pred cccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCcc--ccceeEEEeccCceeeeec-cCCCCCCCCCccccc
Confidence 9999999999988774 56666666667889999986544432 344555554 46679999 5544332211
Q ss_pred --EEEEEeCCEEEEEcCCCCCCCC---------Ccc--cccccceeeEEECCCCceEecccCCcccccceeeeeCCEEEE
Q psy9754 191 --TLVSVNNEKLYIIGGASQTDAT---------NTQ--KMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILI 257 (306)
Q Consensus 191 --~~~~~~~~~iyi~GG~~~~~~~---------~~~--~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v 257 (306)
-.-.. ++++.+.||..-.... ..+ ...-..+++.+| .+.|+.+.++|.++.+..++..++.||+
T Consensus 278 Gaf~G~s-~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~vl~ 354 (381)
T COG3055 278 GAFSGKS-NGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKVLL 354 (381)
T ss_pred eecccee-CCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEEEecCCcEEE
Confidence 11122 4778888875311100 000 011134667776 8999999999999888888888999999
Q ss_pred EeCccCccccccceEEEeecc
Q psy9754 258 IGGVTTVYKRTLKSVECWCFD 278 (306)
Q Consensus 258 ~GG~~~~~~~~~~~~~~yd~~ 278 (306)
+||.+... .++.+|+....+
T Consensus 355 IGGE~~~G-ka~~~v~~l~~~ 374 (381)
T COG3055 355 IGGETSGG-KATTRVYSLSWD 374 (381)
T ss_pred EccccCCC-eeeeeEEEEEEc
Confidence 99998643 445556554433
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.82 E-value=1.6e-18 Score=138.81 Aligned_cols=250 Identities=19% Similarity=0.287 Sum_probs=178.1
Q ss_pred eeecccccccccceE------EEEeCccCcCCCCcccceeeceEEEEeCCC--CCeeeCCCCC-CCccceeeEEECCEEE
Q psy9754 32 DLSIERVSQRYDVKI------NSLAGGVDPSSDEKTTDIVSNSVWSFNPNN--KQWTQEPNMT-YPRKIFSFVSCLDKIY 102 (306)
Q Consensus 32 ~~~~~~p~~r~~~~~------i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t--~~W~~~~~~~-~~~~~~~~~~~~~~iy 102 (306)
+++|++|.+-.+.+- +||-=|. .-...|..|++. ..|+++...| .+|-...++.++++||
T Consensus 28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs-----------~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLy 96 (381)
T COG3055 28 GQLPDLPVGFKNGAGALIGDTVYVGLGS-----------AGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLY 96 (381)
T ss_pred ccCCCCCccccccccceecceEEEEecc-----------CCccceehhhhcCCCCceEcccCCCcccccchheeeCCeEE
Confidence 345777776444322 5654342 135567777765 5799999988 5588888888999999
Q ss_pred EEccCCCC-----CCCceeEEEeCCCCcEEeccCC-cccccceeeEEECC-EEEEEcccCCCCCCC--------------
Q psy9754 103 AIGGQDCK-----TLLSSVECYDPVAHTWEDVAPL-KIARMGMAVAEIND-KIWIAGGYTGDKMNP-------------- 161 (306)
Q Consensus 103 v~GG~~~~-----~~~~~~~~~d~~~~~w~~~~~~-~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~-------------- 161 (306)
+|||.... +..+++|+|||.+++|+++... |....++.++.+++ +||++||.+....+.
T Consensus 97 vFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~ 176 (381)
T COG3055 97 VFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEA 176 (381)
T ss_pred EeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHH
Confidence 99997654 5578999999999999999654 56678888888887 999999975332211
Q ss_pred -----------------CCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceee
Q psy9754 162 -----------------VTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLD 224 (306)
Q Consensus 162 -----------------~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~ 224 (306)
+...+..|||++++|+.+-..+-.++++++ ++..++++.++.|.-....+ +..+.
T Consensus 177 ~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa-~~~~~n~~~lInGEiKpGLR-------t~~~k 248 (381)
T COG3055 177 VDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSA-VVIKGNKLTLINGEIKPGLR-------TAEVK 248 (381)
T ss_pred HHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcc-eeecCCeEEEEcceecCCcc-------cccee
Confidence 247899999999999999334446677644 45555889999987654433 23455
Q ss_pred EEEC--CCCceEecccCCccccc-------ceeeeeCCEEEEEeCccCcc-----------------ccccceEEEeecc
Q psy9754 225 VFVS--NEKEWKFVTELVVPRHA-------HSASVLSSQILIIGGVTTVY-----------------KRTLKSVECWCFD 278 (306)
Q Consensus 225 ~y~~--~~~~W~~~~~~p~~~~~-------~~~~~~~~~i~v~GG~~~~~-----------------~~~~~~~~~yd~~ 278 (306)
+++. +..+|.++.++|.+... +..-..++.+.+.||.+... ....++||++|
T Consensus 249 ~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d-- 326 (381)
T COG3055 249 QADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD-- 326 (381)
T ss_pred EEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--
Confidence 5555 45689999888765332 12223488999999876432 12457888888
Q ss_pred ccceeccCCCCcccccceeeEEecC
Q psy9754 279 RQAWIKGVSGLPATILGHSSVALPL 303 (306)
Q Consensus 279 ~~~W~~~~~~~p~~r~~~~~~~~~~ 303 (306)
.+.|.. +.+||.++..-+++..+.
T Consensus 327 ~g~Wk~-~GeLp~~l~YG~s~~~nn 350 (381)
T COG3055 327 NGSWKI-VGELPQGLAYGVSLSYNN 350 (381)
T ss_pred CCceee-ecccCCCccceEEEecCC
Confidence 999998 899999888877776553
No 29
>KOG2437|consensus
Probab=99.62 E-value=6.3e-17 Score=134.73 Aligned_cols=253 Identities=15% Similarity=0.216 Sum_probs=165.8
Q ss_pred cceeEEeccccccee-EEEEEEeec--Cceeee---cccccccccceE--------EEEeCccCcCCCCcccceeeceEE
Q psy9754 5 WDWELICKEGTEGIK-LLVIWIMDI--VTYDLS---IERVSQRYDVKI--------NSLAGGVDPSSDEKTTDIVSNSVW 70 (306)
Q Consensus 5 ~~~~l~~~gG~~~~~-~~~~~~~~~--~~W~~~---~~~p~~r~~~~~--------i~v~GG~~~~~~~~~~~~~~~~~~ 70 (306)
..+.||++||++|.. +.++|.|.. +.|..+ +..|..|.||.+ ||+.|-+.+.+..+.. ...+++|
T Consensus 271 ~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~-s~RsDfW 349 (723)
T KOG2437|consen 271 QTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSK-SLRSDFW 349 (723)
T ss_pred CCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccccccccc-ccccceE
Confidence 356899999999987 559999999 569876 668999999999 9999988766543333 2567899
Q ss_pred EEeCCCCCeeeCC------CCCCCccceeeEEECCE--EEEEccCCCC---CCCceeEEEeCCCCcEEeccCC-------
Q psy9754 71 SFNPNNKQWTQEP------NMTYPRKIFSFVSCLDK--IYAIGGQDCK---TLLSSVECYDPVAHTWEDVAPL------- 132 (306)
Q Consensus 71 ~~d~~t~~W~~~~------~~~~~~~~~~~~~~~~~--iyv~GG~~~~---~~~~~~~~~d~~~~~w~~~~~~------- 132 (306)
+||..++.|.-+. --|..-..|.+++..++ |||+||..-. ....-+|.||.....|+.+..-
T Consensus 350 ~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~v 429 (723)
T KOG2437|consen 350 RFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPV 429 (723)
T ss_pred EEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcc
Confidence 9999999998763 12455678999988777 9999997544 4457789999999999887431
Q ss_pred ---cccccceeeEEE--CCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcc------cccCCcceeEEEEEEe--CCE
Q psy9754 133 ---KIARMGMAVAEI--NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLA------TKLRYPRYLATLVSVN--NEK 199 (306)
Q Consensus 133 ---~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~------~~~~~~~~~~~~~~~~--~~~ 199 (306)
..+|.+|.+-.+ +.++|++||...+.+ .+-...||+....=..++ ..+...+..+.-+... ..+
T Consensus 430 vE~~~sR~ghcmE~~~~n~~ly~fggq~s~~E---l~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~ 506 (723)
T KOG2437|consen 430 VEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTE---LNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNE 506 (723)
T ss_pred hhHHHHHHHHHHHhcCCCCeEEeccCcccceE---EeehhcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcc
Confidence 235666665443 678999999876655 344455554433322211 1111111111111221 245
Q ss_pred EEEEcCCCCCCCCCcccccccceeeEEECCCCceEeccc------------------------CCcccccceeeee--CC
Q psy9754 200 LYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTE------------------------LVVPRHAHSASVL--SS 253 (306)
Q Consensus 200 iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~------------------------~p~~~~~~~~~~~--~~ 253 (306)
|...-|........ ....-+++++|+..++.|..+.. +|.+|..|+.++. -.
T Consensus 507 i~~~~G~~~~~~~~--e~~~rns~wi~~i~~~~w~cI~~I~~~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~ 584 (723)
T KOG2437|consen 507 IHVLSGLSKDKEKR--EENVRNSFWIYDIVRNSWSCIYKIDQAAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHK 584 (723)
T ss_pred hhhhcccchhccCc--cccccCcEEEEEecccchhhHhhhHHhhccCCceeeccCCcccccceeccccchhHHHHHHhhh
Confidence 66665654322210 01123567888888888875531 2456667765543 56
Q ss_pred EEEEEeCccC
Q psy9754 254 QILIIGGVTT 263 (306)
Q Consensus 254 ~i~v~GG~~~ 263 (306)
-+|.+||...
T Consensus 585 ~~yl~Ggn~~ 594 (723)
T KOG2437|consen 585 VHYLFGGNPG 594 (723)
T ss_pred hhhhhcCCCC
Confidence 7899999876
No 30
>KOG2437|consensus
Probab=99.54 E-value=3.3e-15 Score=124.65 Aligned_cols=241 Identities=17% Similarity=0.233 Sum_probs=164.0
Q ss_pred Cceeeec----------ccccccccceE--------EEEeCccCcCCCCcccceeeceEEEEeCCCCCeeeC---CCCCC
Q psy9754 29 VTYDLSI----------ERVSQRYDVKI--------NSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQE---PNMTY 87 (306)
Q Consensus 29 ~~W~~~~----------~~p~~r~~~~~--------i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W~~~---~~~~~ 87 (306)
.+|.+++ ..|..|.+|++ ||+.||+++.. -+.++|.|+...++|..+ ...|.
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-------~l~DFW~Y~v~e~~W~~iN~~t~~PG 311 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-------DLADFWAYSVKENQWTCINRDTEGPG 311 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch-------hHHHHHhhcCCcceeEEeecCCCCCc
Confidence 4687653 34567999999 99999999876 489999999999999766 34688
Q ss_pred CccceeeEEE--CCEEEEEccCCCC------CCCceeEEEeCCCCcEEeccC------CcccccceeeEEECCE--EEEE
Q psy9754 88 PRKIFSFVSC--LDKIYAIGGQDCK------TLLSSVECYDPVAHTWEDVAP------LKIARMGMAVAEINDK--IWIA 151 (306)
Q Consensus 88 ~~~~~~~~~~--~~~iyv~GG~~~~------~~~~~~~~~d~~~~~w~~~~~------~~~~~~~~~~~~~~~~--iyv~ 151 (306)
.|..|.++.. ..|+|+.|-+-.. ..-+++|+||..++.|.-++- -|.....|.+++.+++ |||+
T Consensus 312 ~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVf 391 (723)
T KOG2437|consen 312 ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVF 391 (723)
T ss_pred chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEe
Confidence 8999988875 4599999976443 445789999999999988742 3566788999998776 9999
Q ss_pred cccCCCCCCCCCccEEEEeCCCCeeEEccccc---------CCcceeEEEEEEe-CCEEEEEcCCCCCCCCCcccccccc
Q psy9754 152 GGYTGDKMNPVTDKVECYDPRTNTWTTLATKL---------RYPRYLATLVSVN-NEKLYIIGGASQTDATNTQKMYSVS 221 (306)
Q Consensus 152 GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~---------~~~~~~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~~~~ 221 (306)
||..-..+......++.||.+...|..+.... ...|.++.+-.+. +..+|++||...... +.
T Consensus 392 GGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~E--------l~ 463 (723)
T KOG2437|consen 392 GGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTE--------LN 463 (723)
T ss_pred cCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceE--------Ee
Confidence 99876555444588999999999998763111 1234444444443 478999998764322 23
Q ss_pred eeeEEECCCCceEecc-------cCCcccccceeeee---CCEEEEEeCccCcc--c--cccceEEEeeccccceec
Q psy9754 222 DLDVFVSNEKEWKFVT-------ELVVPRHAHSASVL---SSQILIIGGVTTVY--K--RTLKSVECWCFDRQAWIK 284 (306)
Q Consensus 222 ~~~~y~~~~~~W~~~~-------~~p~~~~~~~~~~~---~~~i~v~GG~~~~~--~--~~~~~~~~yd~~~~~W~~ 284 (306)
-...|++....=..+. .+-..+.+..-+.. ...|.+.-|..... . ...+++|+|++.++.|.-
T Consensus 464 L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~c 540 (723)
T KOG2437|consen 464 LFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSC 540 (723)
T ss_pred ehhcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhh
Confidence 3455655433222111 11111222211222 45677777765321 1 234789999999999954
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.41 E-value=7.6e-13 Score=78.67 Aligned_cols=49 Identities=41% Similarity=0.645 Sum_probs=45.7
Q ss_pred CccceeeEEECCEEEEEccCCC-CCCCceeEEEeCCCCcEEeccCCcccc
Q psy9754 88 PRKIFSFVSCLDKIYAIGGQDC-KTLLSSVECYDPVAHTWEDVAPLKIAR 136 (306)
Q Consensus 88 ~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~~~~w~~~~~~~~~~ 136 (306)
||.+|++++++++|||+||..+ ....+++++||+.+++|+++++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6889999999999999999988 588899999999999999999999876
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.31 E-value=4.5e-12 Score=75.33 Aligned_cols=50 Identities=26% Similarity=0.496 Sum_probs=44.8
Q ss_pred ccccceeeeeCCEEEEEeCccCccccccceEEEeeccccceeccCCCCcccc
Q psy9754 242 PRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPATI 293 (306)
Q Consensus 242 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~p~~r 293 (306)
+|..++++.++++||++||.... ....+++++||+++++|+. +++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~-~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQ-LPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEE-CCCCCCCC
Confidence 57889999999999999999864 4667899999999999999 79999887
No 33
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.25 E-value=1.6e-11 Score=72.44 Aligned_cols=49 Identities=20% Similarity=0.487 Sum_probs=43.5
Q ss_pred CCEEEEEeCccCccccccceEEEeeccccceeccCCCCcccccceeeEEe
Q psy9754 252 SSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPATILGHSSVAL 301 (306)
Q Consensus 252 ~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~ 301 (306)
+++|||+||........++++|+||+++++|++ ++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~-~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTR-IGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEE-CCCCCCCccceEEEEC
Confidence 578999999985445778999999999999999 5999999999999974
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.21 E-value=2.7e-11 Score=71.04 Aligned_cols=46 Identities=43% Similarity=0.741 Sum_probs=42.5
Q ss_pred CccceeeEEECCEEEEEccCCC-CCCCceeEEEeCCCCcEEeccCCc
Q psy9754 88 PRKIFSFVSCLDKIYAIGGQDC-KTLLSSVECYDPVAHTWEDVAPLK 133 (306)
Q Consensus 88 ~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~~~~w~~~~~~~ 133 (306)
||..+++++++++||++||... ....+++++||+.+++|+++++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6889999999999999999988 688999999999999999999986
No 35
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=99.08 E-value=1.6e-08 Score=80.00 Aligned_cols=162 Identities=17% Similarity=0.326 Sum_probs=108.9
Q ss_pred eEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCC----CeeEEcccccCCcceeEE
Q psy9754 116 VECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRT----NTWTTLATKLRYPRYLAT 191 (306)
Q Consensus 116 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~----~~W~~~~~~~~~~~~~~~ 191 (306)
-..||+.+++++.+......-....+..-+|++.+.||.... ...+..|++.+ ..|.+....|..+|.+++
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G-----~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT 122 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG-----NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT 122 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc-----ccceEEEecCCCCCCCCceECcccccCCCcccc
Confidence 456999999999887543333333444568999999998763 35678888876 569988556899999999
Q ss_pred EEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCC-----CceEecccC--Ccccc-cceeeee-CCEEEEEeCcc
Q psy9754 192 LVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNE-----KEWKFVTEL--VVPRH-AHSASVL-SSQILIIGGVT 262 (306)
Q Consensus 192 ~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~-----~~W~~~~~~--p~~~~-~~~~~~~-~~~i~v~GG~~ 262 (306)
+..+.||+++|+||.... ..+.+.... ..|..+... ..+.. +..+..+ +|+||+++...
T Consensus 123 ~~~L~DG~vlIvGG~~~~------------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSNNP------------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred ceECCCCCEEEEeCcCCC------------cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 999999999999998732 223332211 122223221 12222 2233333 99999998754
Q ss_pred CccccccceEEEeeccccceeccCCCCccc-cc---ceeeEEecC
Q psy9754 263 TVYKRTLKSVECWCFDRQAWIKGVSGLPAT-IL---GHSSVALPL 303 (306)
Q Consensus 263 ~~~~~~~~~~~~yd~~~~~W~~~~~~~p~~-r~---~~~~~~~~~ 303 (306)
..+||+.++++..-++.+|.+ |. ..++|.+|+
T Consensus 191 ---------s~i~d~~~n~v~~~lP~lPg~~R~YP~sgssvmLPl 226 (243)
T PF07250_consen 191 ---------SIIYDYKTNTVVRTLPDLPGGPRNYPASGSSVMLPL 226 (243)
T ss_pred ---------cEEEeCCCCeEEeeCCCCCCCceecCCCcceEEecC
Confidence 458999999884337888865 33 257777776
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.05 E-value=7.7e-10 Score=65.22 Aligned_cols=46 Identities=28% Similarity=0.478 Sum_probs=41.0
Q ss_pred CccceeeEEECCEEEEEccC---CCCCCCceeEEEeCCCCcEEeccCCc
Q psy9754 88 PRKIFSFVSCLDKIYAIGGQ---DCKTLLSSVECYDPVAHTWEDVAPLK 133 (306)
Q Consensus 88 ~~~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~~d~~~~~w~~~~~~~ 133 (306)
||..|++++++++|||+||. ......+++++||+.+++|+++++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 58899999999999999999 34477899999999999999998875
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.05 E-value=5.9e-10 Score=65.71 Aligned_cols=47 Identities=32% Similarity=0.492 Sum_probs=42.6
Q ss_pred CCEEEEEccCC--CCCCCceeEEEeCCCCcEEeccCCcccccceeeEEE
Q psy9754 98 LDKIYAIGGQD--CKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEI 144 (306)
Q Consensus 98 ~~~iyv~GG~~--~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~ 144 (306)
+++|||+||.. ....++++++||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57999999998 457889999999999999999999999999998763
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.01 E-value=7.5e-10 Score=64.81 Aligned_cols=47 Identities=43% Similarity=0.831 Sum_probs=39.8
Q ss_pred cccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccC
Q psy9754 135 ARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLR 184 (306)
Q Consensus 135 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~ 184 (306)
+|.++++++++++||++||...... ..+++++||+++++|+++ ++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~--~~~~v~~yd~~~~~W~~~-~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQ--PTNSVEVYDPETNTWEEL-PPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSS--BEEEEEEEETTTTEEEEE-EEES
T ss_pred CCccCEEEEECCEEEEEeeecccCc--eeeeEEEEeCCCCEEEEc-CCCC
Confidence 5788999999999999999987322 379999999999999999 6654
No 39
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.00 E-value=4.7e-10 Score=66.29 Aligned_cols=46 Identities=30% Similarity=0.507 Sum_probs=31.4
Q ss_pred CccceeeEEE-CCEEEEEccCCCC-CCCceeEEEeCCCCcEEeccCCc
Q psy9754 88 PRKIFSFVSC-LDKIYAIGGQDCK-TLLSSVECYDPVAHTWEDVAPLK 133 (306)
Q Consensus 88 ~~~~~~~~~~-~~~iyv~GG~~~~-~~~~~~~~~d~~~~~w~~~~~~~ 133 (306)
||..|+++.+ +++|||+||...+ ..++++++||+.+++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 6889999988 5899999999887 68899999999999999998877
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.96 E-value=1.7e-09 Score=63.72 Aligned_cols=48 Identities=29% Similarity=0.450 Sum_probs=40.0
Q ss_pred ccccceeeeeCCEEEEEeCc-cCccccccceEEEeeccccceeccCCCCc
Q psy9754 242 PRHAHSASVLSSQILIIGGV-TTVYKRTLKSVECWCFDRQAWIKGVSGLP 290 (306)
Q Consensus 242 ~~~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~~~yd~~~~~W~~~~~~~p 290 (306)
+|..|+++.++++|||+||. ........+++++||+++++|++ ++.+|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~-~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTE-LSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEee-cCCCC
Confidence 57889999999999999999 33334677899999999999999 56554
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.94 E-value=1.1e-09 Score=64.63 Aligned_cols=48 Identities=23% Similarity=0.533 Sum_probs=31.3
Q ss_pred ccccceeeee-CCEEEEEeCccCccccccceEEEeeccccceeccCCCCcc
Q psy9754 242 PRHAHSASVL-SSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPA 291 (306)
Q Consensus 242 ~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~p~ 291 (306)
+|..|+++.+ +++|||+||.+... ..++++|+||+++++|++ ++.+|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~-~~~~d~~~~d~~~~~W~~-~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG-SPLNDLWIFDIETNTWTR-LPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T-EE---EEEEETTTTEEEE---SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC-cccCCEEEEECCCCEEEE-CCCCCC
Confidence 5889999998 68999999998643 578999999999999999 577773
No 42
>smart00612 Kelch Kelch domain.
Probab=98.92 E-value=2.1e-09 Score=62.91 Aligned_cols=47 Identities=43% Similarity=0.712 Sum_probs=42.1
Q ss_pred EEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEECC
Q psy9754 100 KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEIND 146 (306)
Q Consensus 100 ~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~ 146 (306)
+||++||.......+++++||+.+++|+..++|+.+|..++++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998766678899999999999999999999999999888764
No 43
>smart00612 Kelch Kelch domain.
Probab=98.90 E-value=4.1e-09 Score=61.68 Aligned_cols=46 Identities=26% Similarity=0.421 Sum_probs=40.0
Q ss_pred EEEeCccCcCCCCcccceeeceEEEEeCCCCCeeeCCCCCCCccceeeEEECC
Q psy9754 47 NSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLD 99 (306)
Q Consensus 47 i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~ 99 (306)
||++||..... .++++++||+.+++|+.+++|+.+|..++++.+++
T Consensus 2 iyv~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 2 IYVVGGFDGGQ-------RLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred EEEEeCCCCCc-------eeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 79999986422 58899999999999999999999999999887764
No 44
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.79 E-value=4.1e-06 Score=67.18 Aligned_cols=195 Identities=13% Similarity=0.120 Sum_probs=113.4
Q ss_pred ceEEEEeCCCCCeeeCCCCCCCcc---c-eeeEEEC----C-EEEEEccCCCCCCCceeEEEeCCCCcEEeccCCccc-c
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTYPRK---I-FSFVSCL----D-KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIA-R 136 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~~~~---~-~~~~~~~----~-~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~-~ 136 (306)
..+..+||.|++|..+++.+.++. . ......+ + ||..+...........+++|+..+++|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 568999999999999986554211 1 1111122 1 565554422122346788999999999998743321 1
Q ss_pred cceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEE-cccccCCc---ceeEEEEEEeCCEEEEEcCCCCCCCC
Q psy9754 137 MGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTT-LATKLRYP---RYLATLVSVNNEKLYIIGGASQTDAT 212 (306)
Q Consensus 137 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~~~~~---~~~~~~~~~~~~~iyi~GG~~~~~~~ 212 (306)
.....+.++|.||-+.-...... ...+..||..+.+|.+ + +.+... ......+..+ |+|.++.......
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~~~---~~~IvsFDl~~E~f~~~i-~~P~~~~~~~~~~~L~~~~-G~L~~v~~~~~~~-- 166 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKTNP---DYFIVSFDVSSERFKEFI-PLPCGNSDSVDYLSLINYK-GKLAVLKQKKDTN-- 166 (230)
T ss_pred ccCCeEEECCEEEEEEEECCCCC---cEEEEEEEcccceEeeee-ecCccccccccceEEEEEC-CEEEEEEecCCCC--
Confidence 12226678999988764332211 1279999999999995 5 222211 1234556666 8998876532211
Q ss_pred CcccccccceeeEEE-CCCCceEecccCCc---cccc----ceeeeeCCEEEEEeCccCccccccceEEEeecccc
Q psy9754 213 NTQKMYSVSDLDVFV-SNEKEWKFVTELVV---PRHA----HSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQ 280 (306)
Q Consensus 213 ~~~~~~~~~~~~~y~-~~~~~W~~~~~~p~---~~~~----~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~ 280 (306)
.-++|+.+ ....+|++.-.++. +... ...+.-+++|++...... ..-+..||++++
T Consensus 167 -------~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~-----~~~~~~y~~~~~ 230 (230)
T TIGR01640 167 -------NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN-----PFYIFYYNVGEN 230 (230)
T ss_pred -------cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC-----ceEEEEEeccCC
Confidence 13566653 33567997654432 2111 122333788888765411 023889999875
No 45
>PLN02772 guanylate kinase
Probab=98.69 E-value=1.7e-07 Score=78.87 Aligned_cols=85 Identities=19% Similarity=0.259 Sum_probs=68.3
Q ss_pred ccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcc--cccCCcceeEEEEEEeCCEEEEEcCCCCCCC
Q psy9754 134 IARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLA--TKLRYPRYLATLVSVNNEKLYIIGGASQTDA 211 (306)
Q Consensus 134 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~ 211 (306)
.++..++++.+++++||+||..+... ..+.+++||+.+++|.... ...|.+|.+|+++.+++++|+++++....+
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~--~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~- 99 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNT--LSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD- 99 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCcc--ccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc-
Confidence 46777899999999999999776431 3689999999999998864 667899999999999889999998655432
Q ss_pred CCcccccccceeeEEECCC
Q psy9754 212 TNTQKMYSVSDLDVFVSNE 230 (306)
Q Consensus 212 ~~~~~~~~~~~~~~y~~~~ 230 (306)
.++|.+..++
T Consensus 100 ---------~~~w~l~~~t 109 (398)
T PLN02772 100 ---------DSIWFLEVDT 109 (398)
T ss_pred ---------cceEEEEcCC
Confidence 4567766554
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.63 E-value=1.1e-07 Score=53.73 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=35.4
Q ss_pred CCCCccceeeEEECCEEEEEccCC--CCCCCceeEEEeCCCC
Q psy9754 85 MTYPRKIFSFVSCLDKIYAIGGQD--CKTLLSSVECYDPVAH 124 (306)
Q Consensus 85 ~~~~~~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~~d~~~~ 124 (306)
+|.+|..|+++.++++||++||.. .....+++|++|+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 488999999999999999999998 3577899999998763
No 47
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.59 E-value=2.4e-06 Score=67.82 Aligned_cols=154 Identities=12% Similarity=0.170 Sum_probs=96.9
Q ss_pred eeceEEEEeCCCCCeeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCC----CcEEecc-CCcccccce
Q psy9754 65 VSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVA----HTWEDVA-PLKIARMGM 139 (306)
Q Consensus 65 ~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~----~~w~~~~-~~~~~~~~~ 139 (306)
+...--.||+.+++++.+......-....+..-+|++.+.||... ..+.+-.|++.+ ..|.+.+ .|..+|=..
T Consensus 44 ~~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp 121 (243)
T PF07250_consen 44 GPAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP 121 (243)
T ss_pred ceEEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECcccccCCCccc
Confidence 455677899999999887643222212222334899999999755 335566678765 6798775 477777666
Q ss_pred eeEEE-CCEEEEEcccCCCCCCCCCccEEEEeCCC-----CeeEEccc--ccCCcceeEEEEEEeCCEEEEEcCCCCCCC
Q psy9754 140 AVAEI-NDKIWIAGGYTGDKMNPVTDKVECYDPRT-----NTWTTLAT--KLRYPRYLATLVSVNNEKLYIIGGASQTDA 211 (306)
Q Consensus 140 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~d~~~-----~~W~~~~~--~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~ 211 (306)
++..+ +|+++|+||.... ..+.++... ..|.-+.. .....-.+..+....+|+|++++...
T Consensus 122 T~~~L~DG~vlIvGG~~~~-------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~---- 190 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNNP-------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG---- 190 (243)
T ss_pred cceECCCCCEEEEeCcCCC-------cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC----
Confidence 66655 7999999997732 223333321 12222210 01112234456666779999998742
Q ss_pred CCcccccccceeeEEECCCCce-EecccCCcc
Q psy9754 212 TNTQKMYSVSDLDVFVSNEKEW-KFVTELVVP 242 (306)
Q Consensus 212 ~~~~~~~~~~~~~~y~~~~~~W-~~~~~~p~~ 242 (306)
-.+||+.++++ +.++.+|..
T Consensus 191 -----------s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 191 -----------SIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred -----------cEEEeCCCCeEEeeCCCCCCC
Confidence 37889999987 678888754
No 48
>PF13854 Kelch_5: Kelch motif
Probab=98.58 E-value=1.3e-07 Score=53.45 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=36.1
Q ss_pred CCcccccceeeeeCCEEEEEeCccCccccccceEEEeecccc
Q psy9754 239 LVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQ 280 (306)
Q Consensus 239 ~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~ 280 (306)
+|.+|..|+++..+++||++||.........+++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 488999999999999999999999533467799999998763
No 49
>PLN02772 guanylate kinase
Probab=98.55 E-value=6.7e-07 Score=75.38 Aligned_cols=84 Identities=23% Similarity=0.273 Sum_probs=68.0
Q ss_pred CCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEec---ccCCcccccceeeee-CCEEEEEe
Q psy9754 184 RYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFV---TELVVPRHAHSASVL-SSQILIIG 259 (306)
Q Consensus 184 ~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~---~~~p~~~~~~~~~~~-~~~i~v~G 259 (306)
..++..++++.++ +++|++||.+... ..+..+++||..+.+|... ++.|.+|.+|+++.+ +++|+|++
T Consensus 22 ~~~~~~~tav~ig-dk~yv~GG~~d~~-------~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~ 93 (398)
T PLN02772 22 VKPKNRETSVTIG-DKTYVIGGNHEGN-------TLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIK 93 (398)
T ss_pred CCCCCcceeEEEC-CEEEEEcccCCCc-------cccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEe
Confidence 3577888999999 9999999976542 1357899999999999954 477999999999998 78999998
Q ss_pred CccCccccccceEEEeeccc
Q psy9754 260 GVTTVYKRTLKSVECWCFDR 279 (306)
Q Consensus 260 G~~~~~~~~~~~~~~yd~~~ 279 (306)
+..... .++|.+..+|
T Consensus 94 ~~~~~~----~~~w~l~~~t 109 (398)
T PLN02772 94 KGSAPD----DSIWFLEVDT 109 (398)
T ss_pred CCCCCc----cceEEEEcCC
Confidence 776532 6788887765
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.34 E-value=8.7e-05 Score=59.53 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=97.1
Q ss_pred EECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccc---cc-eeeEEEC----C-EEEEEcccCCCCCCCCCccE
Q psy9754 96 SCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIAR---MG-MAVAEIN----D-KIWIAGGYTGDKMNPVTDKV 166 (306)
Q Consensus 96 ~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~---~~-~~~~~~~----~-~iyv~GG~~~~~~~~~~~~~ 166 (306)
.++|-|++... ..+.++||.|++|..+|+.+..+ .. ....-++ . ++..+....... ....+
T Consensus 3 sCnGLlc~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~---~~~~~ 72 (230)
T TIGR01640 3 PCDGLICFSYG-------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR---NQSEH 72 (230)
T ss_pred ccceEEEEecC-------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC---CCccE
Confidence 35677755432 56889999999999998654321 11 1111122 1 455444322111 13578
Q ss_pred EEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccc--
Q psy9754 167 ECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRH-- 244 (306)
Q Consensus 167 ~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~-- 244 (306)
++|+..+++|..+....+........+.++ |.||-+.-...... ...+..||+.+++|....++|....
T Consensus 73 ~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~-G~lyw~~~~~~~~~--------~~~IvsFDl~~E~f~~~i~~P~~~~~~ 143 (230)
T TIGR01640 73 QVYTLGSNSWRTIECSPPHHPLKSRGVCIN-GVLYYLAYTLKTNP--------DYFIVSFDVSSERFKEFIPLPCGNSDS 143 (230)
T ss_pred EEEEeCCCCccccccCCCCccccCCeEEEC-CEEEEEEEECCCCC--------cEEEEEEEcccceEeeeeecCcccccc
Confidence 999999999999842222111112255666 89998874322111 1268999999999996323444332
Q ss_pred --cceeeeeCCEEEEEeCccCccccccceEEEee-ccccceecc
Q psy9754 245 --AHSASVLSSQILIIGGVTTVYKRTLKSVECWC-FDRQAWIKG 285 (306)
Q Consensus 245 --~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd-~~~~~W~~~ 285 (306)
....+.++|+|.++...... ..-++|+.+ .+..+|++.
T Consensus 144 ~~~~~L~~~~G~L~~v~~~~~~---~~~~IWvl~d~~~~~W~k~ 184 (230)
T TIGR01640 144 VDYLSLINYKGKLAVLKQKKDT---NNFDLWVLNDAGKQEWSKL 184 (230)
T ss_pred ccceEEEEECCEEEEEEecCCC---CcEEEEEECCCCCCceeEE
Confidence 33455668998888654321 114677775 346679774
No 51
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.32 E-value=0.00091 Score=53.32 Aligned_cols=172 Identities=12% Similarity=0.093 Sum_probs=101.4
Q ss_pred eeeecccccccccceE-EEEeCccCcCCCCcccceeeceEEEEeCCCCCe-----------eeCCCCCCCccceeeEEE-
Q psy9754 31 YDLSIERVSQRYDVKI-NSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQW-----------TQEPNMTYPRKIFSFVSC- 97 (306)
Q Consensus 31 W~~~~~~p~~r~~~~~-i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W-----------~~~~~~~~~~~~~~~~~~- 97 (306)
.--+..+..++.+..- .++-||..+++. .++.+|.....+..- +-+++.|.+|+.|++-++
T Consensus 24 ~PAv~~~~~~~~~~~~~YlIHGGrTPNNE------lS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~ 97 (337)
T PF03089_consen 24 CPAVCHLSDPSDGEPEQYLIHGGRTPNNE------LSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVH 97 (337)
T ss_pred CccEeeecCCCCCCeeeEEecCCcCCCcc------cccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEE
Confidence 3334444444333333 555577776553 677777776554331 124788999999997766
Q ss_pred -C--CEEEEEccCCCC--------------CCCceeEEEeCCCCcEE--eccCCcccccceeeEEECCEEEEEcccCCCC
Q psy9754 98 -L--DKIYAIGGQDCK--------------TLLSSVECYDPVAHTWE--DVAPLKIARMGMAVAEINDKIWIAGGYTGDK 158 (306)
Q Consensus 98 -~--~~iyv~GG~~~~--------------~~~~~~~~~d~~~~~w~--~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~ 158 (306)
. ..+.+|||..-- .....|+.+|++-+-.+ .++.+....+.|.+..-++.+|++||..-..
T Consensus 98 SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~s 177 (337)
T PF03089_consen 98 SRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLES 177 (337)
T ss_pred ECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccC
Confidence 2 357788986421 33456777888876543 5788888999999999999999999975332
Q ss_pred CCCCCccEEEEeCC--CCe-eEEcccccCCcceeEEEEE--EeCCEEEEEcCCCCCC
Q psy9754 159 MNPVTDKVECYDPR--TNT-WTTLATKLRYPRYLATLVS--VNNEKLYIIGGASQTD 210 (306)
Q Consensus 159 ~~~~~~~~~~~d~~--~~~-W~~~~~~~~~~~~~~~~~~--~~~~~iyi~GG~~~~~ 210 (306)
... ..++++...+ ..+ .... ..++......++++ .+....+|+||+..+.
T Consensus 178 d~R-pp~l~rlkVdLllGSP~vsC-~vl~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 178 DSR-PPRLYRLKVDLLLGSPAVSC-TVLQGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred CCC-CCcEEEEEEeecCCCceeEE-EECCCCceEeeeeEeecCCCceEEEecccccc
Confidence 211 2345554322 111 1111 12222322223333 3356788999986543
No 52
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.24 E-value=0.00024 Score=56.44 Aligned_cols=187 Identities=17% Similarity=0.133 Sum_probs=102.9
Q ss_pred EEEEEccCCCC-CCCceeEEEeCCCCcE-----------EeccCCcccccceeeEEEC----CEEEEEcccCCCCCC---
Q psy9754 100 KIYAIGGQDCK-TLLSSVECYDPVAHTW-----------EDVAPLKIARMGMAVAEIN----DKIWIAGGYTGDKMN--- 160 (306)
Q Consensus 100 ~iyv~GG~~~~-~~~~~~~~~d~~~~~w-----------~~~~~~~~~~~~~~~~~~~----~~iyv~GG~~~~~~~--- 160 (306)
..+|.||.+.+ ..+.++|+....+..- +.+.+.|.+|++|++.++. ....+|||.+.-.-.
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 34445887765 5567777765554331 1136789999999987762 357889997532110
Q ss_pred --------CCCccEEEEeCCCCeeEEcc-cccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECC--
Q psy9754 161 --------PVTDKVECYDPRTNTWTTLA-TKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSN-- 229 (306)
Q Consensus 161 --------~~~~~~~~~d~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~-- 229 (306)
-....++.+|++-...+.-. +.+.....+|.+.+-+ +.+|++||.......- -..+++...+
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~-D~VYilGGHsl~sd~R------pp~l~rlkVdLl 192 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARN-DCVYILGGHSLESDSR------PPRLYRLKVDLL 192 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecC-ceEEEEccEEccCCCC------CCcEEEEEEeec
Confidence 01346788888877765531 4455666777776666 9999999987554330 0122332211
Q ss_pred CCc-eEecccCCcccccceeeee---CCEEEEEeCccCcccc---------ccceEEEeeccccceeccCCCCcccccce
Q psy9754 230 EKE-WKFVTELVVPRHAHSASVL---SSQILIIGGVTTVYKR---------TLKSVECWCFDRQAWIKGVSGLPATILGH 296 (306)
Q Consensus 230 ~~~-W~~~~~~p~~~~~~~~~~~---~~~i~v~GG~~~~~~~---------~~~~~~~yd~~~~~W~~~~~~~p~~r~~~ 296 (306)
-+. .-.-..++......++.+. .+..+++||....... .-+.+++=..+.-+|+. ++...|.++
T Consensus 193 lGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie~~E~P~Wt~---dI~hSrtWF 269 (337)
T PF03089_consen 193 LGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIEEREPPEWTG---DIKHSRTWF 269 (337)
T ss_pred CCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEeccCCCCCCCC---CcCcCcccc
Confidence 111 1111123334333333332 4677888987754321 11334444456667744 444444433
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.90 E-value=0.013 Score=51.10 Aligned_cols=173 Identities=8% Similarity=0.127 Sum_probs=100.4
Q ss_pred eceEEEEeCCCCC--eeeCCCCCC--CccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCc--EEeccCCccc----
Q psy9754 66 SNSVWSFNPNNKQ--WTQEPNMTY--PRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT--WEDVAPLKIA---- 135 (306)
Q Consensus 66 ~~~~~~~d~~t~~--W~~~~~~~~--~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--w~~~~~~~~~---- 135 (306)
...++.+|+++++ |+.-...|. .+...+.+..++.+|+..+. ..++.+|+.+++ |+.--..+..
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~------g~v~a~d~~~G~~~W~~~~~~~~~~~~~ 242 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN------GRVSAVLMEQGQLIWQQRISQPTGATEI 242 (394)
T ss_pred CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC------CEEEEEEccCChhhheeccccCCCccch
Confidence 3578999999886 876543221 12223344457777775432 457778888775 7642111110
Q ss_pred ----ccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCe--eEEcccccCCcceeEEEEEEeCCEEEEEcCCCCC
Q psy9754 136 ----RMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNT--WTTLATKLRYPRYLATLVSVNNEKLYIIGGASQT 209 (306)
Q Consensus 136 ----~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~ 209 (306)
.....-++.++.+|+.+. ...++++|+++.+ |+.-... . ...+..+ ++||+....
T Consensus 243 ~~~~~~~~sP~v~~~~vy~~~~---------~g~l~ald~~tG~~~W~~~~~~---~---~~~~~~~-~~vy~~~~~--- 303 (394)
T PRK11138 243 DRLVDVDTTPVVVGGVVYALAY---------NGNLVALDLRSGQIVWKREYGS---V---NDFAVDG-GRIYLVDQN--- 303 (394)
T ss_pred hcccccCCCcEEECCEEEEEEc---------CCeEEEEECCCCCEEEeecCCC---c---cCcEEEC-CEEEEEcCC---
Confidence 011233456888888652 2578999988765 8764111 1 1233444 899987532
Q ss_pred CCCCcccccccceeeEEECCCCc--eEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccc--eec
Q psy9754 210 DATNTQKMYSVSDLDVFVSNEKE--WKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQA--WIK 284 (306)
Q Consensus 210 ~~~~~~~~~~~~~~~~y~~~~~~--W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~--W~~ 284 (306)
..++.+|+.+.+ |+.-. ...+...+.+..++.||+... + ..++++|+++++ |+.
T Consensus 304 -----------g~l~ald~~tG~~~W~~~~--~~~~~~~sp~v~~g~l~v~~~-~-------G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 304 -----------DRVYALDTRGGVELWSQSD--LLHRLLTAPVLYNGYLVVGDS-E-------GYLHWINREDGRFVAQQ 361 (394)
T ss_pred -----------CeEEEEECCCCcEEEcccc--cCCCcccCCEEECCEEEEEeC-C-------CEEEEEECCCCCEEEEE
Confidence 457888887664 75321 112334455566888887532 2 357788887765 543
No 54
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.74 E-value=0.015 Score=46.69 Aligned_cols=171 Identities=12% Similarity=0.183 Sum_probs=100.4
Q ss_pred eceEEEEeCCCCC--eeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCc--EE-eccCCcc--cccc
Q psy9754 66 SNSVWSFNPNNKQ--WTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT--WE-DVAPLKI--ARMG 138 (306)
Q Consensus 66 ~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--w~-~~~~~~~--~~~~ 138 (306)
...++.+|+.+++ |+.-. +.+- ....+..++.||+... ...++.+|..+++ |+ .....+. ....
T Consensus 45 ~~~l~~~d~~tG~~~W~~~~--~~~~-~~~~~~~~~~v~v~~~------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~ 115 (238)
T PF13360_consen 45 DGNLYALDAKTGKVLWRFDL--PGPI-SGAPVVDGGRVYVGTS------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSS 115 (238)
T ss_dssp TSEEEEEETTTSEEEEEEEC--SSCG-GSGEEEETTEEEEEET------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--
T ss_pred CCEEEEEECCCCCEEEEeec--cccc-cceeeecccccccccc------eeeeEecccCCcceeeeeccccccccccccc
Confidence 5789999998886 65443 2221 1114666889988863 1378999988776 88 4433222 2233
Q ss_pred eeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCe--eEEcccccCCcce-------eEEEEEEeCCEEEEEcCCCCC
Q psy9754 139 MAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNT--WTTLATKLRYPRY-------LATLVSVNNEKLYIIGGASQT 209 (306)
Q Consensus 139 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~-------~~~~~~~~~~~iyi~GG~~~~ 209 (306)
......++.+|+... ...+..+|+++.+ |+.- ...+.... ..+...+.++.+|+..+..
T Consensus 116 ~~~~~~~~~~~~~~~---------~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-- 183 (238)
T PF13360_consen 116 SSPAVDGDRLYVGTS---------SGKLVALDPKTGKLLWKYP-VGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG-- 183 (238)
T ss_dssp SEEEEETTEEEEEET---------CSEEEEEETTTTEEEEEEE-SSTT-SS--EEEETTEEEEEECCTTEEEEECCTS--
T ss_pred cCceEecCEEEEEec---------cCcEEEEecCCCcEEEEee-cCCCCCCcceeeecccccceEEECCEEEEEcCCC--
Confidence 344455777777653 3679999999876 7664 22221111 1123333347888876643
Q ss_pred CCCCcccccccceeeEEECCCCc--eEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccc
Q psy9754 210 DATNTQKMYSVSDLDVFVSNEKE--WKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 210 ~~~~~~~~~~~~~~~~y~~~~~~--W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
.+..+|..+++ |+.. +.. .......-++.||+.. .. ..++++|+++++
T Consensus 184 ------------~~~~~d~~tg~~~w~~~--~~~--~~~~~~~~~~~l~~~~-~~-------~~l~~~d~~tG~ 233 (238)
T PF13360_consen 184 ------------RVVAVDLATGEKLWSKP--ISG--IYSLPSVDGGTLYVTS-SD-------GRLYALDLKTGK 233 (238)
T ss_dssp ------------SEEEEETTTTEEEEEEC--SS---ECECEECCCTEEEEEE-TT-------TEEEEEETTTTE
T ss_pred ------------eEEEEECCCCCEEEEec--CCC--ccCCceeeCCEEEEEe-CC-------CEEEEEECCCCC
Confidence 24555888887 7433 111 1112333477777776 44 589999998876
No 55
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.71 E-value=0.019 Score=48.93 Aligned_cols=123 Identities=15% Similarity=0.224 Sum_probs=80.6
Q ss_pred ECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCC--CCCccEEEE--e--
Q psy9754 97 CLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMN--PVTDKVECY--D-- 170 (306)
Q Consensus 97 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~--~~~~~~~~~--d-- 170 (306)
.+.+|+.++.. ..+.+||..+..-...|.+........+..++++||++......... .....++.+ +
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 48899998654 44788999999999889888777777777889999999875433211 000144444 3
Q ss_pred ------CCCCeeEEcccccCCcce-------eEEEEEEeCCEEEE-EcCCCCCCCCCcccccccceeeEEECCCCceEec
Q psy9754 171 ------PRTNTWTTLATKLRYPRY-------LATLVSVNNEKLYI-IGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFV 236 (306)
Q Consensus 171 ------~~~~~W~~~~~~~~~~~~-------~~~~~~~~~~~iyi-~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~ 236 (306)
....+|+.+ +++|..+. -.+-++++...|+| +.+.. ...+.||.++.+|++.
T Consensus 149 ~~~~~~~~~w~W~~L-P~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-------------~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 149 PDDPSPEESWSWRSL-PPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-------------WGTYSFDTESHEWRKH 214 (342)
T ss_pred cccccCCCcceEEcC-CCCCccccCCcccceEEEEEEecCCeEEEEecCCc-------------eEEEEEEcCCcceeec
Confidence 234468998 55554432 12233333478888 33321 2369999999999999
Q ss_pred ccC
Q psy9754 237 TEL 239 (306)
Q Consensus 237 ~~~ 239 (306)
...
T Consensus 215 GdW 217 (342)
T PF07893_consen 215 GDW 217 (342)
T ss_pred cce
Confidence 853
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.59 E-value=0.043 Score=47.91 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=89.1
Q ss_pred ceEEEEeCCCCC--eeeCCCCCCC--------ccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCc--EEeccCCcc
Q psy9754 67 NSVWSFNPNNKQ--WTQEPNMTYP--------RKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT--WEDVAPLKI 134 (306)
Q Consensus 67 ~~~~~~d~~t~~--W~~~~~~~~~--------~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--w~~~~~~~~ 134 (306)
..++.+|+++++ |+.-...+.. ....+.+..++.+|+.+.. ..++.+|+.+++ |+.-- ..
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~--~~ 286 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN------GNLVALDLRSGQIVWKREY--GS 286 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC------CeEEEEECCCCCEEEeecC--CC
Confidence 457788888775 7643211111 1123344568899987531 468889998876 87531 11
Q ss_pred cccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCe--eEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCC
Q psy9754 135 ARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNT--WTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDAT 212 (306)
Q Consensus 135 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~ 212 (306)
. ...+..+++||+... ...++.+|+++.+ |+.- .. ..+...+.+..+ +.||+....
T Consensus 287 ~---~~~~~~~~~vy~~~~---------~g~l~ald~~tG~~~W~~~-~~--~~~~~~sp~v~~-g~l~v~~~~------ 344 (394)
T PRK11138 287 V---NDFAVDGGRIYLVDQ---------NDRVYALDTRGGVELWSQS-DL--LHRLLTAPVLYN-GYLVVGDSE------ 344 (394)
T ss_pred c---cCcEEECCEEEEEcC---------CCeEEEEECCCCcEEEccc-cc--CCCcccCCEEEC-CEEEEEeCC------
Confidence 1 134567899999753 3578999988764 8653 11 112222334445 888875332
Q ss_pred CcccccccceeeEEECCCCc--eEecccCCcccccceeeeeCCEEEEEe
Q psy9754 213 NTQKMYSVSDLDVFVSNEKE--WKFVTELVVPRHAHSASVLSSQILIIG 259 (306)
Q Consensus 213 ~~~~~~~~~~~~~y~~~~~~--W~~~~~~p~~~~~~~~~~~~~~i~v~G 259 (306)
..++.+|..+.+ |+. .+.......+.+..+++||+..
T Consensus 345 --------G~l~~ld~~tG~~~~~~--~~~~~~~~s~P~~~~~~l~v~t 383 (394)
T PRK11138 345 --------GYLHWINREDGRFVAQQ--KVDSSGFLSEPVVADDKLLIQA 383 (394)
T ss_pred --------CEEEEEECCCCCEEEEE--EcCCCcceeCCEEECCEEEEEe
Confidence 457788887765 432 2222234445566788888774
No 57
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.58 E-value=0.028 Score=45.51 Aligned_cols=184 Identities=11% Similarity=0.110 Sum_probs=102.4
Q ss_pred eceEEEEeCCCCCeeeCCCCCCCccceeeEEE--CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCc-----ccccc
Q psy9754 66 SNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC--LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLK-----IARMG 138 (306)
Q Consensus 66 ~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~-----~~~~~ 138 (306)
...++++++.+++-..+.. +. -.+++.. ++.+|+... ....++|+.+++++.+...+ ..+..
T Consensus 21 ~~~i~~~~~~~~~~~~~~~-~~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~N 89 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVIDL-PG---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTVLADLPDGGVPFNRPN 89 (246)
T ss_dssp TTEEEEEETTTTEEEEEES-SS---EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEEEEEEETTCSCTEEEE
T ss_pred CCEEEEEECCCCeEEEEec-CC---CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEEEeeccCCCcccCCCc
Confidence 4689999998876544322 22 2333333 688888865 33456799999998886653 12222
Q ss_pred eeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCC-EEEEEcCCCCCCCCCcccc
Q psy9754 139 MAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNE-KLYIIGGASQTDATNTQKM 217 (306)
Q Consensus 139 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~iyi~GG~~~~~~~~~~~~ 217 (306)
-.++.-++.||+..-............++++++. .+.+.+...+..+ .+++...++ .||+..-..
T Consensus 90 D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds~~---------- 155 (246)
T PF08450_consen 90 DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVADSFN---------- 155 (246)
T ss_dssp EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEEETTT----------
T ss_pred eEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeeccccc----------
Confidence 2333346888886532222111001679999999 7766663333222 244444445 577754332
Q ss_pred cccceeeEEECCCCc--eE---ecccCCccc-ccceeeee-CCEEEEEeCccCccccccceEEEeeccccceec
Q psy9754 218 YSVSDLDVFVSNEKE--WK---FVTELVVPR-HAHSASVL-SSQILIIGGVTTVYKRTLKSVECWCFDRQAWIK 284 (306)
Q Consensus 218 ~~~~~~~~y~~~~~~--W~---~~~~~p~~~-~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~ 284 (306)
..+++|+++... +. .+..++... .--++++- +|+||+..-.. ..|++||++...-..
T Consensus 156 ---~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-------~~I~~~~p~G~~~~~ 219 (246)
T PF08450_consen 156 ---GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-------GRIVVFDPDGKLLRE 219 (246)
T ss_dssp ---TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-------TEEEEEETTSCEEEE
T ss_pred ---ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-------CEEEEECCCccEEEE
Confidence 568999886443 33 222333332 12334443 78999974323 579999999554444
No 58
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.53 E-value=0.049 Score=47.16 Aligned_cols=172 Identities=11% Similarity=0.140 Sum_probs=95.5
Q ss_pred eceEEEEeCCCCC--eeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCc--EEeccCCcc--cccce
Q psy9754 66 SNSVWSFNPNNKQ--WTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT--WEDVAPLKI--ARMGM 139 (306)
Q Consensus 66 ~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--w~~~~~~~~--~~~~~ 139 (306)
...++.+|..+++ |+.-.. .+ .....+..++.+|+..+ ...++.+|+.+++ |+.....+. .+...
T Consensus 114 ~g~l~ald~~tG~~~W~~~~~--~~-~~~~p~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~ 184 (377)
T TIGR03300 114 KGEVIALDAEDGKELWRAKLS--SE-VLSPPLVANGLVVVRTN------DGRLTALDAATGERLWTYSRVTPALTLRGSA 184 (377)
T ss_pred CCEEEEEECCCCcEeeeeccC--ce-eecCCEEECCEEEEECC------CCeEEEEEcCCCceeeEEccCCCceeecCCC
Confidence 3578999998875 865322 11 12233445778877643 2558889998765 775432221 12223
Q ss_pred eeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCe--eEEcccccCCc-----c---eeEEEEEEeCCEEEEEcCCCCC
Q psy9754 140 AVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNT--WTTLATKLRYP-----R---YLATLVSVNNEKLYIIGGASQT 209 (306)
Q Consensus 140 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~-----~---~~~~~~~~~~~~iyi~GG~~~~ 209 (306)
..+..++.+|+ +.. ...+..+|+++.+ |+.- ...+.. + ...+.+..+ +.+|+....
T Consensus 185 sp~~~~~~v~~-~~~--------~g~v~ald~~tG~~~W~~~-~~~~~g~~~~~~~~~~~~~p~~~~-~~vy~~~~~--- 250 (377)
T TIGR03300 185 SPVIADGGVLV-GFA--------GGKLVALDLQTGQPLWEQR-VALPKGRTELERLVDVDGDPVVDG-GQVYAVSYQ--- 250 (377)
T ss_pred CCEEECCEEEE-ECC--------CCEEEEEEccCCCEeeeec-cccCCCCCchhhhhccCCccEEEC-CEEEEEEcC---
Confidence 33455676654 321 2468899987764 8643 111111 0 112233334 788876432
Q ss_pred CCCCcccccccceeeEEECCCCc--eEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeecccc--ceec
Q psy9754 210 DATNTQKMYSVSDLDVFVSNEKE--WKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQ--AWIK 284 (306)
Q Consensus 210 ~~~~~~~~~~~~~~~~y~~~~~~--W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~--~W~~ 284 (306)
..++.+|+++.+ |+.-. ......+..+++||+... + ..++++|..++ .|+.
T Consensus 251 -----------g~l~a~d~~tG~~~W~~~~-----~~~~~p~~~~~~vyv~~~-~-------G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 251 -----------GRVAALDLRSGRVLWKRDA-----SSYQGPAVDDNRLYVTDA-D-------GVVVALDRRSGSELWKN 305 (377)
T ss_pred -----------CEEEEEECCCCcEEEeecc-----CCccCceEeCCEEEEECC-C-------CeEEEEECCCCcEEEcc
Confidence 457889987654 65421 112344456888888742 2 46888888765 4754
No 59
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.50 E-value=0.034 Score=44.56 Aligned_cols=175 Identities=14% Similarity=0.217 Sum_probs=99.4
Q ss_pred ceEEEEeCCCCC--eeeCCCCCCCcccee--eEEECCEEEEEccCCCCCCCceeEEEeCCCCc--EEeccCCccccccee
Q psy9754 67 NSVWSFNPNNKQ--WTQEPNMTYPRKIFS--FVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT--WEDVAPLKIARMGMA 140 (306)
Q Consensus 67 ~~~~~~d~~t~~--W~~~~~~~~~~~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--w~~~~~~~~~~~~~~ 140 (306)
..+..+|+.+++ |+.-. ..+..... .+..++.+|+..+ ...++++|..+++ |+.-.+ ......
T Consensus 3 g~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~--~~~~~~- 71 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL--GPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDLP--GPISGA- 71 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC--SSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEECS--SCGGSG-
T ss_pred CEEEEEECCCCCEEEEEEC--CCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeecc--ccccce-
Confidence 456788887775 76522 11122222 3446889999843 3678999998887 665432 221111
Q ss_pred eEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCe--eE-EcccccCCc-ceeEEEEEEeCCEEEEEcCCCCCCCCCccc
Q psy9754 141 VAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNT--WT-TLATKLRYP-RYLATLVSVNNEKLYIIGGASQTDATNTQK 216 (306)
Q Consensus 141 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~-~~~~~~~~~-~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~ 216 (306)
....++.+|+... .+.++.+|.++.+ |+ ......... .........+ +.+|+....
T Consensus 72 ~~~~~~~v~v~~~---------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------- 131 (238)
T PF13360_consen 72 PVVDGGRVYVGTS---------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSS---------- 131 (238)
T ss_dssp EEEETTEEEEEET---------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETC----------
T ss_pred eeecccccccccc---------eeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEecc----------
Confidence 3778899988762 2479999977665 98 442222222 2222333333 677665431
Q ss_pred ccccceeeEEECCCCc--eEecccCCccc--------ccceeeeeCCEEEEEeCccCccccccceEEEeeccccc--eec
Q psy9754 217 MYSVSDLDVFVSNEKE--WKFVTELVVPR--------HAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQA--WIK 284 (306)
Q Consensus 217 ~~~~~~~~~y~~~~~~--W~~~~~~p~~~--------~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~--W~~ 284 (306)
..+..+|+.+++ |+.-...+... ........++.+|+..+.. .+..+|.++++ |+.
T Consensus 132 ----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g--------~~~~~d~~tg~~~w~~ 199 (238)
T PF13360_consen 132 ----GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG--------RVVAVDLATGEKLWSK 199 (238)
T ss_dssp ----SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS--------SEEEEETTTTEEEEEE
T ss_pred ----CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC--------eEEEEECCCCCEEEEe
Confidence 568999988765 66433332211 1223333467888876544 24455888876 854
No 60
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.45 E-value=0.007 Score=51.49 Aligned_cols=125 Identities=18% Similarity=0.262 Sum_probs=77.8
Q ss_pred ECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCccccccccee
Q psy9754 144 INDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDL 223 (306)
Q Consensus 144 ~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~ 223 (306)
.+.+|+.++.. ....+||+++..-..+ +.+..+.....++.++ ++||++............... .-++
T Consensus 75 ~gskIv~~d~~---------~~t~vyDt~t~av~~~-P~l~~pk~~pisv~VG-~~LY~m~~~~~~~~~~~~~~~-~FE~ 142 (342)
T PF07893_consen 75 HGSKIVAVDQS---------GRTLVYDTDTRAVATG-PRLHSPKRCPISVSVG-DKLYAMDRSPFPEPAGRPDFP-CFEA 142 (342)
T ss_pred cCCeEEEEcCC---------CCeEEEECCCCeEecc-CCCCCCCcceEEEEeC-CeEEEeeccCccccccCccce-eEEE
Confidence 58899888542 4588999999998888 6676666666777778 789999876433221000000 2223
Q ss_pred eEEEC--------CCCceEecccCCcccc-------cceeeee-CCEEEE-EeCccCccccccceEEEeeccccceeccC
Q psy9754 224 DVFVS--------NEKEWKFVTELVVPRH-------AHSASVL-SSQILI-IGGVTTVYKRTLKSVECWCFDRQAWIKGV 286 (306)
Q Consensus 224 ~~y~~--------~~~~W~~~~~~p~~~~-------~~~~~~~-~~~i~v-~GG~~~~~~~~~~~~~~yd~~~~~W~~~~ 286 (306)
..|+. ..-.|+.+++.|.... -.+-+++ +..|+| +.+.. ...+.||.++.+|+. +
T Consensus 143 l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-------~GTysfDt~~~~W~~-~ 214 (342)
T PF07893_consen 143 LVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-------WGTYSFDTESHEWRK-H 214 (342)
T ss_pred eccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-------eEEEEEEcCCcceee-c
Confidence 33442 2236778777664432 2333444 557777 44432 247899999999988 5
Q ss_pred CC
Q psy9754 287 SG 288 (306)
Q Consensus 287 ~~ 288 (306)
++
T Consensus 215 Gd 216 (342)
T PF07893_consen 215 GD 216 (342)
T ss_pred cc
Confidence 54
No 61
>KOG2055|consensus
Probab=97.45 E-value=0.031 Score=47.75 Aligned_cols=126 Identities=13% Similarity=0.053 Sum_probs=73.6
Q ss_pred eceEEEEeCCCCCeeeCCCCC---CCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeE
Q psy9754 66 SNSVWSFNPNNKQWTQEPNMT---YPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVA 142 (306)
Q Consensus 66 ~~~~~~~d~~t~~W~~~~~~~---~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~ 142 (306)
..-++.||.++.+-.++.++- ..-....-++.++.+.++-|.. ..+......++.|-.--.++......+..
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----G~I~lLhakT~eli~s~KieG~v~~~~fs 353 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----GHIHLLHAKTKELITSFKIEGVVSDFTFS 353 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC-----ceEEeehhhhhhhhheeeeccEEeeEEEe
Confidence 466899999999988887653 1122223344566677776643 34555666677664333344444444444
Q ss_pred EECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCC
Q psy9754 143 EINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGA 206 (306)
Q Consensus 143 ~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~ 206 (306)
....+|+++|| .+.++++|+.++..... -.-.-...+.+.+.-.++..+..|..
T Consensus 354 Sdsk~l~~~~~---------~GeV~v~nl~~~~~~~r-f~D~G~v~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 354 SDSKELLASGG---------TGEVYVWNLRQNSCLHR-FVDDGSVHGTSLCISLNGSYLATGSD 407 (514)
T ss_pred cCCcEEEEEcC---------CceEEEEecCCcceEEE-EeecCccceeeeeecCCCceEEeccC
Confidence 45578888887 46799999999864443 11112223334443344675555543
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.38 E-value=0.078 Score=45.94 Aligned_cols=156 Identities=17% Similarity=0.174 Sum_probs=87.2
Q ss_pred ceEEEEeCCCCC--eeeCCCCCCCc--------cceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCc--EEeccCCcc
Q psy9754 67 NSVWSFNPNNKQ--WTQEPNMTYPR--------KIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT--WEDVAPLKI 134 (306)
Q Consensus 67 ~~~~~~d~~t~~--W~~~~~~~~~~--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--w~~~~~~~~ 134 (306)
..++.+|+++++ |+.-...+... .....+..++.||+.... ..++++|+.+++ |+.-. .
T Consensus 200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~~tG~~~W~~~~--~- 270 (377)
T TIGR03300 200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDLRSGRVLWKRDA--S- 270 (377)
T ss_pred CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEECCCCcEEEeecc--C-
Confidence 468889998875 75432212111 122334457888886431 458889998765 76531 1
Q ss_pred cccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCe--eEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCC
Q psy9754 135 ARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNT--WTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDAT 212 (306)
Q Consensus 135 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~ 212 (306)
.....+..+++||+... ...++++|..+.+ |+.- . +. .+...+.+..+ +.||+... +
T Consensus 271 --~~~~p~~~~~~vyv~~~---------~G~l~~~d~~tG~~~W~~~-~-~~-~~~~ssp~i~g-~~l~~~~~-~----- 329 (377)
T TIGR03300 271 --SYQGPAVDDNRLYVTDA---------DGVVVALDRRSGSELWKND-E-LK-YRQLTAPAVVG-GYLVVGDF-E----- 329 (377)
T ss_pred --CccCceEeCCEEEEECC---------CCeEEEEECCCCcEEEccc-c-cc-CCccccCEEEC-CEEEEEeC-C-----
Confidence 12233456889998742 3578999987664 7653 1 11 11222333344 77776432 1
Q ss_pred CcccccccceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeC
Q psy9754 213 NTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGG 260 (306)
Q Consensus 213 ~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG 260 (306)
..++.+|..+.+-...-+++......+.+..+++||+.+.
T Consensus 330 --------G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 330 --------GYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTR 369 (377)
T ss_pred --------CEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeC
Confidence 4578888876642211122222345566777888886654
No 63
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.38 E-value=0.025 Score=46.45 Aligned_cols=122 Identities=16% Similarity=0.317 Sum_probs=70.5
Q ss_pred EEEccCCCCC--CCceeEEEeCCCCcEEeccCCcccccceeeEEE-CCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEE
Q psy9754 102 YAIGGQDCKT--LLSSVECYDPVAHTWEDVAPLKIARMGMAVAEI-NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTT 178 (306)
Q Consensus 102 yv~GG~~~~~--~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~ 178 (306)
||.|-.+... .-..+-.||..+.+|.....--... -..+... ++++|+.|-....... ...+..||.++.+|+.
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~--~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTN--SSNLATYDFKNQTWSS 78 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCC--ceeEEEEecCCCeeee
Confidence 4444444433 2466788999999999886542111 1233333 6777777754433311 4679999999999999
Q ss_pred cccc----cCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEeccc
Q psy9754 179 LATK----LRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTE 238 (306)
Q Consensus 179 ~~~~----~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~ 238 (306)
+... +|.+.........+...+++.|..... ...+..| +..+|..+..
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g----------~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG----------STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEeceecCC----------CceEEEE--cCCceEeccc
Confidence 8431 233322111112233567777665221 1335555 6779998875
No 64
>KOG2055|consensus
Probab=97.24 E-value=0.035 Score=47.46 Aligned_cols=175 Identities=12% Similarity=0.095 Sum_probs=95.6
Q ss_pred EEEeCccCcCCCCcccceeeceEEEEeCCCCCeeeCCCCCCCccceeeE-EE-CCE-EEEEccCCCCCCCceeEEEeCCC
Q psy9754 47 NSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFV-SC-LDK-IYAIGGQDCKTLLSSVECYDPVA 123 (306)
Q Consensus 47 i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~-~~-~~~-iyv~GG~~~~~~~~~~~~~d~~~ 123 (306)
|++++|++. .-++|..|-+++. .+.++...+.-...+ .. +|. ..+.+|.. .-++.||+.+
T Consensus 227 lllvaG~d~----------~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr-----ky~ysyDle~ 289 (514)
T KOG2055|consen 227 LLLVAGLDG----------TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR-----KYLYSYDLET 289 (514)
T ss_pred eEEEecCCC----------cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccc-----eEEEEeeccc
Confidence 889999874 5678888888876 444443332221111 11 444 66666643 4478899999
Q ss_pred CcEEeccCCcc--ccc-ceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEE
Q psy9754 124 HTWEDVAPLKI--ARM-GMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKL 200 (306)
Q Consensus 124 ~~w~~~~~~~~--~~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i 200 (306)
.+-+++.++.. .+. ..--+..++.+.++-|.. +.|......|+.|..- -.++ ++.......-+..+|
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~--------G~I~lLhakT~eli~s-~Kie-G~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN--------GHIHLLHAKTKELITS-FKIE-GVVSDFTFSSDSKEL 359 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccC--------ceEEeehhhhhhhhhe-eeec-cEEeeEEEecCCcEE
Confidence 99998876542 112 112233344455555533 4567777777777432 2222 222111222222567
Q ss_pred EEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceee-eeCCEEEEEeCcc
Q psy9754 201 YIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSAS-VLSSQILIIGGVT 262 (306)
Q Consensus 201 yi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~-~~~~~i~v~GG~~ 262 (306)
++.||. ..+|++|+..+.-...-.-.......+.| .+++..+.+|...
T Consensus 360 ~~~~~~--------------GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~ 408 (514)
T KOG2055|consen 360 LASGGT--------------GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDS 408 (514)
T ss_pred EEEcCC--------------ceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCc
Confidence 777776 56899999877433222111122333333 3477766666443
No 65
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.22 E-value=0.022 Score=46.77 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=64.8
Q ss_pred CccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEeccc----
Q psy9754 163 TDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTE---- 238 (306)
Q Consensus 163 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~---- 238 (306)
...++.||+++.+|..+ ..--.. .-.++....+++||+.|-...... ....+-.||.++.+|+.+..
T Consensus 15 C~~lC~yd~~~~qW~~~-g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~-------~~~~la~yd~~~~~w~~~~~~~s~ 85 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSP-GNGISG-TVTDLQWASNNQLLVGGNFTLNGT-------NSSNLATYDFKNQTWSSLGGGSSN 85 (281)
T ss_pred CCEEEEEECCCCEeecC-CCCceE-EEEEEEEecCCEEEEEEeeEECCC-------CceeEEEEecCCCeeeecCCcccc
Confidence 47899999999999999 333122 223444444588888875543331 12568899999999997775
Q ss_pred -CCcccccceeeeeC-CEEEEEeCccCccccccceEEEeeccccceecc
Q psy9754 239 -LVVPRHAHSASVLS-SQILIIGGVTTVYKRTLKSVECWCFDRQAWIKG 285 (306)
Q Consensus 239 -~p~~~~~~~~~~~~-~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~ 285 (306)
+|.+.........+ ..+++.|.... ...+++.-+..+|..+
T Consensus 86 ~ipgpv~a~~~~~~d~~~~~~aG~~~~------g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 86 SIPGPVTALTFISNDGSNFWVAGRSAN------GSTFLMKYDGSSWSSI 128 (281)
T ss_pred cCCCcEEEEEeeccCCceEEEeceecC------CCceEEEEcCCceEec
Confidence 23332111111223 36777766532 2334444467789884
No 66
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=97.21 E-value=0.053 Score=43.80 Aligned_cols=184 Identities=12% Similarity=0.041 Sum_probs=104.5
Q ss_pred CCEEEEEccCCCCCCCceeEEEeC-----CCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCC
Q psy9754 98 LDKIYAIGGQDCKTLLSSVECYDP-----VAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPR 172 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~~d~-----~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~ 172 (306)
.++||++.+.... .+..|.. ..+...+.-.+|.+-.+.+.++++|.+|.--. .++.|.+||+.
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~--------~s~~IvkydL~ 97 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY--------NSRNIVKYDLT 97 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec--------CCceEEEEECc
Confidence 5688999886653 4555532 23334444456777778888889999987543 15889999999
Q ss_pred CCeeE---EcccccCC---c-----ceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCc
Q psy9754 173 TNTWT---TLATKLRY---P-----RYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVV 241 (306)
Q Consensus 173 ~~~W~---~~~~~~~~---~-----~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~ 241 (306)
+.+-. .++..... + -...-.++. +.-|+++=........ -.+-+.|+++..-+..-....
T Consensus 98 t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvD-E~GLWvIYat~~~~g~--------ivvskld~~tL~v~~tw~T~~ 168 (250)
T PF02191_consen 98 TRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVD-ENGLWVIYATEDNNGN--------IVVSKLDPETLSVEQTWNTSY 168 (250)
T ss_pred CCcEEEEEECCccccccccceecCCCceEEEEEc-CCCEEEEEecCCCCCc--------EEEEeeCcccCceEEEEEecc
Confidence 98755 34211101 0 011223333 3556666444333221 345556666544333333333
Q ss_pred ccc-cceeeeeCCEEEEEeCccCccccccceEEEeeccccceeccCCCCcccccceeeEEecCCC
Q psy9754 242 PRH-AHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPATILGHSSVALPLKS 305 (306)
Q Consensus 242 ~~~-~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~~ 305 (306)
.+. ...+.++-|.||++....... ..-.++||..+++=..+.-.++.+-..++++-.++.+
T Consensus 169 ~k~~~~naFmvCGvLY~~~s~~~~~---~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~d 230 (250)
T PF02191_consen 169 PKRSAGNAFMVCGVLYATDSYDTRD---TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRD 230 (250)
T ss_pred CchhhcceeeEeeEEEEEEECCCCC---cEEEEEEECCCCceeceeeeeccccCceEeeeECCCC
Confidence 433 334556699999998766421 2456899998876655322334444566666665544
No 67
>smart00284 OLF Olfactomedin-like domains.
Probab=96.90 E-value=0.16 Score=40.84 Aligned_cols=197 Identities=12% Similarity=0.079 Sum_probs=106.9
Q ss_pred CCCCeeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeC----CCCcEEeccCCcccccceeeEEECCEEEE
Q psy9754 75 NNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDP----VAHTWEDVAPLKIARMGMAVAEINDKIWI 150 (306)
Q Consensus 75 ~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~----~~~~w~~~~~~~~~~~~~~~~~~~~~iyv 150 (306)
..+.|.+-+..+.+. ++++|++.+... ..+.+..|.. ......+.-.+|.+-.+.+.++++|.+|.
T Consensus 19 ~~GaWmkD~~~~~~~--------~~~~wv~~~~~~--~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY 88 (255)
T smart00284 19 KSGAWMKDPLWNTTK--------KSLYWYMPLNTR--VLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYF 88 (255)
T ss_pred ccceeecCCCCCCCC--------CceEEEEccccC--CCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEE
Confidence 457785544322221 468888866431 1244555533 23344343456777888888999999998
Q ss_pred EcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcc------------eeEEEEEEeCCEEEEEcCCCCCCCCCccccc
Q psy9754 151 AGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPR------------YLATLVSVNNEKLYIIGGASQTDATNTQKMY 218 (306)
Q Consensus 151 ~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~------------~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~ 218 (306)
--.. +..+.+||+.+.+-... ..+|.+. ...-.++.. +-|+++=........
T Consensus 89 ~~~~--------s~~iiKydL~t~~v~~~-~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE-~GLWvIYat~~~~g~------ 152 (255)
T smart00284 89 NKFN--------SHDICRFDLTTETYQKE-PLLNGAGYNNRFPYAWGGFSDIDLAVDE-NGLWVIYATEQNAGK------ 152 (255)
T ss_pred EecC--------CccEEEEECCCCcEEEE-EecCccccccccccccCCCccEEEEEcC-CceEEEEeccCCCCC------
Confidence 5321 46899999999986433 2222211 112233333 445554222222111
Q ss_pred ccceeeEEECCCCceEecccCCcccccc-eeeeeCCEEEEEeCccCccccccceEEEeeccccceeccCCCCc--ccccc
Q psy9754 219 SVSDLDVFVSNEKEWKFVTELVVPRHAH-SASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLP--ATILG 295 (306)
Q Consensus 219 ~~~~~~~y~~~~~~W~~~~~~p~~~~~~-~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~p--~~r~~ 295 (306)
-.+-+.|+.+.+-+..-..+.++... .+.++-|.||++-.... ....-.++||..+++=. ...+| .....
T Consensus 153 --ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvCGvLY~~~s~~~---~~~~I~yayDt~t~~~~--~~~i~f~n~y~~ 225 (255)
T smart00284 153 --IVISKLNPATLTIENTWITTYNKRSASNAFMICGILYVTRSLGS---KGEKVFYAYDTNTGKEG--HLDIPFENMYEY 225 (255)
T ss_pred --EEEEeeCcccceEEEEEEcCCCcccccccEEEeeEEEEEccCCC---CCcEEEEEEECCCCccc--eeeeeecccccc
Confidence 34456777666555544555554444 45566999999964221 12245789999887632 34444 33444
Q ss_pred eeeEEecCC
Q psy9754 296 HSSVALPLK 304 (306)
Q Consensus 296 ~~~~~~~~~ 304 (306)
++++-.++.
T Consensus 226 ~s~l~YNP~ 234 (255)
T smart00284 226 ISMLDYNPN 234 (255)
T ss_pred ceeceeCCC
Confidence 555544443
No 68
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.88 E-value=0.19 Score=41.43 Aligned_cols=176 Identities=10% Similarity=-0.002 Sum_probs=83.2
Q ss_pred eceEEEEeCCCCCeeeCCCCCCCccceeeEEE-CC-EEEEEccCCCCCCCceeEEEeCCCCcEEe-ccCCcccccceeeE
Q psy9754 66 SNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC-LD-KIYAIGGQDCKTLLSSVECYDPVAHTWED-VAPLKIARMGMAVA 142 (306)
Q Consensus 66 ~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~d~~~~~w~~-~~~~~~~~~~~~~~ 142 (306)
...+..+|+.+++-...-.... . ...++.. ++ .+|+.++.+ ..+.+||..+.+... ++..... ..++
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~-~-~~~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~---~~~~ 79 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQ-R-PRGITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTLPSGPDP---ELFA 79 (300)
T ss_pred CCEEEEEECCCCceEEEEECCC-C-CCceEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEeccCCCCc---cEEE
Confidence 3578888988776432211111 1 1122222 33 567776532 557889988876543 2221111 1222
Q ss_pred E-EC-CEEEEEcccCCCCCCCCCccEEEEeCCCCeeE-EcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccc
Q psy9754 143 E-IN-DKIWIAGGYTGDKMNPVTDKVECYDPRTNTWT-TLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYS 219 (306)
Q Consensus 143 ~-~~-~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~ 219 (306)
. -+ +.+|+.++. .+.+..+|+.+.+-. .+ . ......++....++++++++....
T Consensus 80 ~~~~g~~l~~~~~~--------~~~l~~~d~~~~~~~~~~-~---~~~~~~~~~~~~dg~~l~~~~~~~----------- 136 (300)
T TIGR03866 80 LHPNGKILYIANED--------DNLVTVIDIETRKVLAEI-P---VGVEPEGMAVSPDGKIVVNTSETT----------- 136 (300)
T ss_pred ECCCCCEEEEEcCC--------CCeEEEEECCCCeEEeEe-e---CCCCcceEEECCCCCEEEEEecCC-----------
Confidence 2 23 456665431 246889998876422 22 1 111112334444577776654321
Q ss_pred cceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccce
Q psy9754 220 VSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282 (306)
Q Consensus 220 ~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W 282 (306)
..+..||..+.+-....... .+..+....-+++.+++++... ..+.+||.++.+.
T Consensus 137 -~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~------~~v~i~d~~~~~~ 191 (300)
T TIGR03866 137 -NMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIG------GTVSVIDVATRKV 191 (300)
T ss_pred -CeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCC------CEEEEEEcCccee
Confidence 23455676654332111111 1111112223555555554322 4688888877653
No 69
>smart00284 OLF Olfactomedin-like domains.
Probab=96.86 E-value=0.18 Score=40.64 Aligned_cols=185 Identities=11% Similarity=0.020 Sum_probs=102.6
Q ss_pred eEEEEeCccCcCCCCcccceeeceEEEEe----CCCCCeeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEe
Q psy9754 45 KINSLAGGVDPSSDEKTTDIVSNSVWSFN----PNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYD 120 (306)
Q Consensus 45 ~~i~v~GG~~~~~~~~~~~~~~~~~~~~d----~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d 120 (306)
..++++.+... ..+.++.|. ...+++.+.-.+|.+-.+.+.++.++.+|.--. ....+.+||
T Consensus 35 ~~~wv~~~~~~---------~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKyd 100 (255)
T smart00284 35 SLYWYMPLNTR---------VLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFD 100 (255)
T ss_pred ceEEEEccccC---------CCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec-----CCccEEEEE
Confidence 33777766431 134555553 233444444456777777788889999998633 236799999
Q ss_pred CCCCcEEeccCCcccc------------cceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcc-cccCCcc
Q psy9754 121 PVAHTWEDVAPLKIAR------------MGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLA-TKLRYPR 187 (306)
Q Consensus 121 ~~~~~w~~~~~~~~~~------------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~~~~~~ 187 (306)
+.+++-.....+|.+. ...-.++-++=|+++=....... .-.+.+.|+++..-++.= ...+. +
T Consensus 101 L~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g---~ivvSkLnp~tL~ve~tW~T~~~k-~ 176 (255)
T smart00284 101 LTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG---KIVISKLNPATLTIENTWITTYNK-R 176 (255)
T ss_pred CCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC---CEEEEeeCcccceEEEEEEcCCCc-c
Confidence 9999865444344221 11233444555777644333222 234567888776533320 11122 2
Q ss_pred eeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccc--cceeeee---CCEEEEE
Q psy9754 188 YLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRH--AHSASVL---SSQILII 258 (306)
Q Consensus 188 ~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~--~~~~~~~---~~~i~v~ 258 (306)
....+++++ |.||++-...... ..-.+.||..+++=+ ...+|.+.. .+++... +.+||+.
T Consensus 177 sa~naFmvC-GvLY~~~s~~~~~---------~~I~yayDt~t~~~~-~~~i~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 177 SASNAFMIC-GILYVTRSLGSKG---------EKVFYAYDTNTGKEG-HLDIPFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred cccccEEEe-eEEEEEccCCCCC---------cEEEEEEECCCCccc-eeeeeeccccccceeceeCCCCCeEEEE
Confidence 233567778 8999996422111 134688999887633 333444433 3333333 6678876
No 70
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.82 E-value=0.2 Score=40.54 Aligned_cols=166 Identities=14% Similarity=0.141 Sum_probs=85.4
Q ss_pred eEEEEeCCCCCeeeCCCCC-----CCccceeeEEECCEEEEEccCCCC-CCC--ceeEEEeCCCCcEEeccCCcccccce
Q psy9754 68 SVWSFNPNNKQWTQEPNMT-----YPRKIFSFVSCLDKIYAIGGQDCK-TLL--SSVECYDPVAHTWEDVAPLKIARMGM 139 (306)
Q Consensus 68 ~~~~~d~~t~~W~~~~~~~-----~~~~~~~~~~~~~~iyv~GG~~~~-~~~--~~~~~~d~~~~~w~~~~~~~~~~~~~ 139 (306)
....+|+.+++++.+...+ ..+.+-.++.-++.||+-.-.... ... ..++++++. ++.+.+..- -....
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pN 137 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPN 137 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEE
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--ccccc
Confidence 4456699999998776553 222222333347888887432222 112 679999999 665554321 11112
Q ss_pred eeEEE--CCEEEEEcccCCCCCCCCCccEEEEeCCCCe--eEEc--ccccCCcc-eeEEEEEEeCCEEEEEcCCCCCCCC
Q psy9754 140 AVAEI--NDKIWIAGGYTGDKMNPVTDKVECYDPRTNT--WTTL--ATKLRYPR-YLATLVSVNNEKLYIIGGASQTDAT 212 (306)
Q Consensus 140 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~--~~~~~~~~-~~~~~~~~~~~~iyi~GG~~~~~~~ 212 (306)
+.+.. ++.+|+.-- ....+++|++.... +... ....+... .--++++..++.||+..-..
T Consensus 138 Gi~~s~dg~~lyv~ds--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~----- 204 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADS--------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG----- 204 (246)
T ss_dssp EEEEETTSSEEEEEET--------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----
T ss_pred ceEECCcchheeeccc--------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----
Confidence 33333 346777421 14679999886332 3321 01222222 23345555579999974221
Q ss_pred CcccccccceeeEEECCCCceEecccCCcccccceeeee---CCEEEEEe
Q psy9754 213 NTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVL---SSQILIIG 259 (306)
Q Consensus 213 ~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~---~~~i~v~G 259 (306)
..+.+||++ ++-...-.+|.++ -..++.. .+.|||.-
T Consensus 205 --------~~I~~~~p~-G~~~~~i~~p~~~-~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 205 --------GRIVVFDPD-GKLLREIELPVPR-PTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --------TEEEEEETT-SCEEEEEE-SSSS-EEEEEEESTTSSEEEEEE
T ss_pred --------CEEEEECCC-ccEEEEEcCCCCC-EEEEEEECCCCCEEEEEe
Confidence 578999998 4434333455332 2233332 35677753
No 71
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.62 E-value=0.28 Score=39.66 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=103.9
Q ss_pred EEEeCccCcCCCCcccceeeceEEEEeC-----CCCCeeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeC
Q psy9754 47 NSLAGGVDPSSDEKTTDIVSNSVWSFNP-----NNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDP 121 (306)
Q Consensus 47 i~v~GG~~~~~~~~~~~~~~~~~~~~d~-----~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~ 121 (306)
+|++.+... +.++.|.- ..++..+.-.+|.+-.+.+.++.++.+|.--. ..+.+.+||+
T Consensus 33 iy~~~~~~~-----------~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL 96 (250)
T PF02191_consen 33 IYVTSGFSG-----------NTVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDL 96 (250)
T ss_pred EEEECccCC-----------CEEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec-----CCceEEEEEC
Confidence 888877543 24444422 23344444456666667777888998888743 3578999999
Q ss_pred CCCcEEeccCCcccc------------cceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCe----eEEcccccCC
Q psy9754 122 VAHTWEDVAPLKIAR------------MGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNT----WTTLATKLRY 185 (306)
Q Consensus 122 ~~~~w~~~~~~~~~~------------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~----W~~~~~~~~~ 185 (306)
.+++-..-..+|.+. ...-.++-++-|+|+-....... .-.+.+.|+++.+ |..- .+.
T Consensus 97 ~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g---~ivvskld~~tL~v~~tw~T~---~~k 170 (250)
T PF02191_consen 97 TTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG---NIVVSKLDPETLSVEQTWNTS---YPK 170 (250)
T ss_pred cCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC---cEEEEeeCcccCceEEEEEec---cCc
Confidence 999865222222221 12333444556787765544332 2356677777654 5432 223
Q ss_pred cceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccc--cceeeee---CCEEEEEe
Q psy9754 186 PRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRH--AHSASVL---SSQILIIG 259 (306)
Q Consensus 186 ~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~--~~~~~~~---~~~i~v~G 259 (306)
+.. ..+++++ |.||++....... ..-.+.||..+++=.. ..++.+.. ..++... +.+||+..
T Consensus 171 ~~~-~naFmvC-GvLY~~~s~~~~~---------~~I~yafDt~t~~~~~-~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 171 RSA-GNAFMVC-GVLYATDSYDTRD---------TEIFYAFDTYTGKEED-VSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred hhh-cceeeEe-eEEEEEEECCCCC---------cEEEEEEECCCCceec-eeeeeccccCceEeeeECCCCCeEEEEE
Confidence 333 3467777 8999998765432 1345889998777543 33444433 3333333 67888874
No 72
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.60 E-value=0.14 Score=41.38 Aligned_cols=109 Identities=20% Similarity=0.174 Sum_probs=72.5
Q ss_pred eEE-ECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCC
Q psy9754 94 FVS-CLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPR 172 (306)
Q Consensus 94 ~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~ 172 (306)
+.. .++.+|.--|.... +.+.++|+.+++-.+..++|..-.+-+++.++++||..-=. .+...+||.+
T Consensus 50 L~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk--------~~~~f~yd~~ 118 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK--------EGTGFVYDPN 118 (264)
T ss_dssp EEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS--------SSEEEEEETT
T ss_pred EEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec--------CCeEEEEccc
Confidence 444 47899998776553 77889999999988778888888888999999999997522 3678999998
Q ss_pred CCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCC
Q psy9754 173 TNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEK 231 (306)
Q Consensus 173 ~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~ 231 (306)
+-+ .+ ...+.+.-+=+++..+ .++++..|. ..++..||++-
T Consensus 119 tl~--~~-~~~~y~~EGWGLt~dg-~~Li~SDGS--------------~~L~~~dP~~f 159 (264)
T PF05096_consen 119 TLK--KI-GTFPYPGEGWGLTSDG-KRLIMSDGS--------------SRLYFLDPETF 159 (264)
T ss_dssp TTE--EE-EEEE-SSS--EEEECS-SCEEEE-SS--------------SEEEEE-TTT-
T ss_pred cce--EE-EEEecCCcceEEEcCC-CEEEEECCc--------------cceEEECCccc
Confidence 754 33 2223333333455444 788888885 56788888753
No 73
>KOG0310|consensus
Probab=96.60 E-value=0.1 Score=44.99 Aligned_cols=209 Identities=15% Similarity=0.170 Sum_probs=103.9
Q ss_pred ceeeecccccccccceE-EEEeCccCcCCCCcccceeeceEEEEeCCCCCeeeCCCCCCCccceee-EEECCEEEEEccC
Q psy9754 30 TYDLSIERVSQRYDVKI-NSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSF-VSCLDKIYAIGGQ 107 (306)
Q Consensus 30 ~W~~~~~~p~~r~~~~~-i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~-~~~~~~iyv~GG~ 107 (306)
-|.+.+..+.+.-+.++ -+.|+=..+..- --..+..+..|+..+..=.+.-. ..-+...++ ...+|+++.+|+.
T Consensus 13 ~w~~~~~~~~~ke~~~vssl~fsp~~P~d~---aVt~S~rvqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~ 88 (487)
T KOG0310|consen 13 YWRQETFPPVHKEHNSVSSLCFSPKHPYDF---AVTSSVRVQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDE 88 (487)
T ss_pred hhhhhcccccccccCcceeEecCCCCCCce---EEecccEEEEEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCC
Confidence 47666555555444444 334433222210 00145678888877643221100 112222333 3348999999985
Q ss_pred CCCCCCceeEEEeCCCCc-EEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeE-EcccccCC
Q psy9754 108 DCKTLLSSVECYDPVAHT-WEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWT-TLATKLRY 185 (306)
Q Consensus 108 ~~~~~~~~~~~~d~~~~~-w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~~~~ 185 (306)
. ..+.+||..+.. -+.+.....+......+..++.+++.|+-+ ..+-.+|..+..-+ ++......
T Consensus 89 s-----G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd--------~v~k~~d~s~a~v~~~l~~htDY 155 (487)
T KOG0310|consen 89 S-----GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD--------KVVKYWDLSTAYVQAELSGHTDY 155 (487)
T ss_pred c-----CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC--------ceEEEEEcCCcEEEEEecCCcce
Confidence 4 457889954422 111111111222222334678888888633 23444555554422 23222233
Q ss_pred cceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeee-C-CEEEEEeCccC
Q psy9754 186 PRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVL-S-SQILIIGGVTT 263 (306)
Q Consensus 186 ~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~-~-~~i~v~GG~~~ 263 (306)
-|+ ..+.-.+++|++.||+. ..+..||....+ ..+.++..+..--.++.+ . ..|...||.
T Consensus 156 VR~--g~~~~~~~hivvtGsYD-------------g~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn-- 217 (487)
T KOG0310|consen 156 VRC--GDISPANDHIVVTGSYD-------------GKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGN-- 217 (487)
T ss_pred eEe--eccccCCCeEEEecCCC-------------ceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCC--
Confidence 343 22333348999999987 567889988774 444444333222234444 3 344445553
Q ss_pred ccccccceEEEeecccc
Q psy9754 264 VYKRTLKSVECWCFDRQ 280 (306)
Q Consensus 264 ~~~~~~~~~~~yd~~~~ 280 (306)
.+-+||..++
T Consensus 218 -------~vkVWDl~~G 227 (487)
T KOG0310|consen 218 -------SVKVWDLTTG 227 (487)
T ss_pred -------eEEEEEecCC
Confidence 3557776543
No 74
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.43 E-value=0.13 Score=41.55 Aligned_cols=96 Identities=14% Similarity=0.158 Sum_probs=65.7
Q ss_pred ECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCccccccccee
Q psy9754 144 INDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDL 223 (306)
Q Consensus 144 ~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~ 223 (306)
.++.+|.-.|..+ .+.+.++|+++++-... .+++..-++-+++.++ ++||.+.=.+ ...
T Consensus 54 ~~g~LyESTG~yG------~S~l~~~d~~tg~~~~~-~~l~~~~FgEGit~~~-d~l~qLTWk~-------------~~~ 112 (264)
T PF05096_consen 54 DDGTLYESTGLYG------QSSLRKVDLETGKVLQS-VPLPPRYFGEGITILG-DKLYQLTWKE-------------GTG 112 (264)
T ss_dssp ETTEEEEEECSTT------EEEEEEEETTTSSEEEE-EE-TTT--EEEEEEET-TEEEEEESSS-------------SEE
T ss_pred CCCEEEEeCCCCC------cEEEEEEECCCCcEEEE-EECCccccceeEEEEC-CEEEEEEecC-------------CeE
Confidence 5789998877654 36899999999986655 4555555666666666 9999997654 567
Q ss_pred eEEECCCCceEecccCCcccccceeeeeCCEEEEEeCcc
Q psy9754 224 DVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVT 262 (306)
Q Consensus 224 ~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~ 262 (306)
.+||++ +++.+..++.+..+-+++.-+..+++--|.+
T Consensus 113 f~yd~~--tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 113 FVYDPN--TLKKIGTFPYPGEGWGLTSDGKRLIMSDGSS 149 (264)
T ss_dssp EEEETT--TTEEEEEEE-SSS--EEEECSSCEEEE-SSS
T ss_pred EEEccc--cceEEEEEecCCcceEEEcCCCEEEEECCcc
Confidence 899986 4677777766666667776677888887755
No 75
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.41 E-value=0.49 Score=40.01 Aligned_cols=140 Identities=14% Similarity=0.194 Sum_probs=81.9
Q ss_pred CEEEEEccCCC-C---CCC-ceeEEEeCCCC-----cEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEE
Q psy9754 99 DKIYAIGGQDC-K---TLL-SSVECYDPVAH-----TWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVEC 168 (306)
Q Consensus 99 ~~iyv~GG~~~-~---~~~-~~~~~~d~~~~-----~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 168 (306)
...+++|.... . ... ..+.+|+.... +.+.+......-.-.+.+.++++|.+.-| +.+..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g----------~~l~v 111 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG----------NKLYV 111 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET----------TEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec----------CEEEE
Confidence 46666664321 1 122 67888988885 55555544444444566777999666654 56788
Q ss_pred EeCCCCe-eEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccce
Q psy9754 169 YDPRTNT-WTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHS 247 (306)
Q Consensus 169 ~d~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~ 247 (306)
|+.+..+ +... .....+-...++...+ +.|++-.-.. .-.+..|+.+..+...++.-..++...+
T Consensus 112 ~~l~~~~~l~~~-~~~~~~~~i~sl~~~~-~~I~vgD~~~------------sv~~~~~~~~~~~l~~va~d~~~~~v~~ 177 (321)
T PF03178_consen 112 YDLDNSKTLLKK-AFYDSPFYITSLSVFK-NYILVGDAMK------------SVSLLRYDEENNKLILVARDYQPRWVTA 177 (321)
T ss_dssp EEEETTSSEEEE-EEE-BSSSEEEEEEET-TEEEEEESSS------------SEEEEEEETTTE-EEEEEEESS-BEEEE
T ss_pred EEccCcccchhh-heecceEEEEEEeccc-cEEEEEEccc------------CEEEEEEEccCCEEEEEEecCCCccEEE
Confidence 8888777 7777 4443333444555555 6666543321 1345677876667777776666777677
Q ss_pred eeee-CCEEEEEeCcc
Q psy9754 248 ASVL-SSQILIIGGVT 262 (306)
Q Consensus 248 ~~~~-~~~i~v~GG~~ 262 (306)
+..+ ++..++++-..
T Consensus 178 ~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 178 AEFLVDEDTIIVGDKD 193 (321)
T ss_dssp EEEE-SSSEEEEEETT
T ss_pred EEEecCCcEEEEEcCC
Confidence 7777 65555554433
No 76
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.40 E-value=0.29 Score=41.41 Aligned_cols=133 Identities=13% Similarity=0.090 Sum_probs=76.1
Q ss_pred CEEEEEcc-cCCCCCCCCC-ccEEEEeCCCC-----eeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCccccc
Q psy9754 146 DKIWIAGG-YTGDKMNPVT-DKVECYDPRTN-----TWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMY 218 (306)
Q Consensus 146 ~~iyv~GG-~~~~~~~~~~-~~~~~~d~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~ 218 (306)
...+++|- .......... +++..|+..+. +.+.+ ........-.+++.++ ++|++.-|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i-~~~~~~g~V~ai~~~~-~~lv~~~g------------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI-HSTEVKGPVTAICSFN-GRLVVAVG------------- 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE-EEEEESS-EEEEEEET-TEEEEEET-------------
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE-EEEeecCcceEhhhhC-CEEEEeec-------------
Confidence 45666663 3333322223 78999998885 55555 3323333334555665 88666555
Q ss_pred ccceeeEEECCCCc-eEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccceeccCCCCccccccee
Q psy9754 219 SVSDLDVFVSNEKE-WKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPATILGHS 297 (306)
Q Consensus 219 ~~~~~~~y~~~~~~-W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~p~~r~~~~ 297 (306)
..+.+|++..+. +...+....+-...++...++.|++.--..+ -.+..|+.+..+-.. +...+.++.-.+
T Consensus 107 --~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~s------v~~~~~~~~~~~l~~-va~d~~~~~v~~ 177 (321)
T PF03178_consen 107 --NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKS------VSLLRYDEENNKLIL-VARDYQPRWVTA 177 (321)
T ss_dssp --TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSS------EEEEEEETTTE-EEE-EEEESS-BEEEE
T ss_pred --CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccC------EEEEEEEccCCEEEE-EEecCCCccEEE
Confidence 457888888777 8888877666555566666775554432222 234455765555655 566666777777
Q ss_pred eEEec
Q psy9754 298 SVALP 302 (306)
Q Consensus 298 ~~~~~ 302 (306)
+..+.
T Consensus 178 ~~~l~ 182 (321)
T PF03178_consen 178 AEFLV 182 (321)
T ss_dssp EEEE-
T ss_pred EEEec
Confidence 77773
No 77
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.07 E-value=0.7 Score=38.53 Aligned_cols=194 Identities=12% Similarity=0.206 Sum_probs=85.8
Q ss_pred EEEEeCCCCCeeeCCC-CCCCccceeeEEE-CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEECC
Q psy9754 69 VWSFNPNNKQWTQEPN-MTYPRKIFSFVSC-LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEIND 146 (306)
Q Consensus 69 ~~~~d~~t~~W~~~~~-~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~ 146 (306)
+++-.-.=.+|++++. .+.|...+.+..+ ++.+.+++.. ..+++=.-.-.+|+.+..-...........-++
T Consensus 83 ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG 156 (302)
T PF14870_consen 83 LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR------GAIYRTTDGGKTWQAVVSETSGSINDITRSSDG 156 (302)
T ss_dssp EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--------EEEESSTTSSEEEEE-S----EEEEEE-TTS
T ss_pred EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeCCCCCCeeEcccCCcceeEeEEECCCC
Confidence 3444334467999862 2444444544444 6677777643 345555556778998764333222222333467
Q ss_pred EEEEEcccCCCCCCCCCccE-EEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeE
Q psy9754 147 KIWIAGGYTGDKMNPVTDKV-ECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDV 225 (306)
Q Consensus 147 ~iyv~GG~~~~~~~~~~~~~-~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~ 225 (306)
++++++- ...+ ...|+....|+.. ... ..|.-.++....++.|++++-- ..+..
T Consensus 157 ~~vavs~---------~G~~~~s~~~G~~~w~~~-~r~-~~~riq~~gf~~~~~lw~~~~G--------------g~~~~ 211 (302)
T PF14870_consen 157 RYVAVSS---------RGNFYSSWDPGQTTWQPH-NRN-SSRRIQSMGFSPDGNLWMLARG--------------GQIQF 211 (302)
T ss_dssp -EEEEET---------TSSEEEEE-TT-SS-EEE-E---SSS-EEEEEE-TTS-EEEEETT--------------TEEEE
T ss_pred cEEEEEC---------cccEEEEecCCCccceEE-ccC-ccceehhceecCCCCEEEEeCC--------------cEEEE
Confidence 7666653 2233 4558888889998 333 3444456666667888887521 12233
Q ss_pred EE--CCCCceEecccCCccccc---ceeeee-CCEEEEEeCccCccccccceEEEeeccccceeccCCCCcccccceeeE
Q psy9754 226 FV--SNEKEWKFVTELVVPRHA---HSASVL-SSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPATILGHSSV 299 (306)
Q Consensus 226 y~--~~~~~W~~~~~~p~~~~~---~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~ 299 (306)
=+ -...+|.+-. .|..... ..++.. ++.+++.||... +++=.-.-++|++.....+.+-.....+
T Consensus 212 s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G~--------l~~S~DgGktW~~~~~~~~~~~n~~~i~ 282 (302)
T PF14870_consen 212 SDDPDDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGSGT--------LLVSTDGGKTWQKDRVGENVPSNLYRIV 282 (302)
T ss_dssp EE-TTEEEEE---B--TTSS--S-EEEEEESSSS-EEEEESTT---------EEEESSTTSS-EE-GGGTTSSS---EEE
T ss_pred ccCCCCcccccccc-CCcccCceeeEEEEecCCCCEEEEeCCcc--------EEEeCCCCccceECccccCCCCceEEEE
Confidence 33 2345677632 2322222 233333 689999988653 4444556778987422223333333444
Q ss_pred Eec
Q psy9754 300 ALP 302 (306)
Q Consensus 300 ~~~ 302 (306)
.++
T Consensus 283 f~~ 285 (302)
T PF14870_consen 283 FVN 285 (302)
T ss_dssp EEE
T ss_pred EcC
Confidence 433
No 78
>PRK00178 tolB translocation protein TolB; Provisional
Probab=96.03 E-value=0.99 Score=39.91 Aligned_cols=182 Identities=8% Similarity=-0.014 Sum_probs=94.5
Q ss_pred ceEEEEeCCCCCeeeCCCCCCCccceeeEEE-CC-EEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEE
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC-LD-KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEI 144 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~ 144 (306)
..++.+|+.+++-+.+...+.. ....... ++ +|++.....+ ..+++++|..++..+++......-......--
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~--~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spD 297 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGL--NGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKD 297 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCC--cCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCCCCcCCeEECCC
Confidence 4688888888877666543321 1122222 44 4544322221 26789999999988877543321111221112
Q ss_pred CCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeC-CEEEEEcCCCCCCCCCccccccccee
Q psy9754 145 NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNN-EKLYIIGGASQTDATNTQKMYSVSDL 223 (306)
Q Consensus 145 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~iyi~GG~~~~~~~~~~~~~~~~~~ 223 (306)
+++|++.....+ ...++.+|+.+..++.+ ... ...........+ +.|++...... ...+
T Consensus 298 g~~i~f~s~~~g------~~~iy~~d~~~g~~~~l-t~~--~~~~~~~~~Spdg~~i~~~~~~~~-----------~~~l 357 (430)
T PRK00178 298 GRTLYFTSDRGG------KPQIYKVNVNGGRAERV-TFV--GNYNARPRLSADGKTLVMVHRQDG-----------NFHV 357 (430)
T ss_pred CCEEEEEECCCC------CceEEEEECCCCCEEEe-ecC--CCCccceEECCCCCEEEEEEccCC-----------ceEE
Confidence 345665532211 24789999988888777 221 111111222223 45555433211 1468
Q ss_pred eEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccc
Q psy9754 224 DVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDR 279 (306)
Q Consensus 224 ~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~ 279 (306)
+.+|+.+...+.+..... .......-+++.+++...... ...+++.+.+.
T Consensus 358 ~~~dl~tg~~~~lt~~~~--~~~p~~spdg~~i~~~~~~~g----~~~l~~~~~~g 407 (430)
T PRK00178 358 AAQDLQRGSVRILTDTSL--DESPSVAPNGTMLIYATRQQG----RGVLMLVSING 407 (430)
T ss_pred EEEECCCCCEEEccCCCC--CCCceECCCCCEEEEEEecCC----ceEEEEEECCC
Confidence 899999888777654321 111222336666666543321 14577777754
No 79
>KOG0310|consensus
Probab=96.03 E-value=0.9 Score=39.41 Aligned_cols=146 Identities=15% Similarity=0.222 Sum_probs=79.6
Q ss_pred EECCEEEEEccCCCCCCCceeEEEeCCCCcEE-eccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCC
Q psy9754 96 SCLDKIYAIGGQDCKTLLSSVECYDPVAHTWE-DVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTN 174 (306)
Q Consensus 96 ~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~-~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~ 174 (306)
..++.+++.|+-+. .+-.+|..+..-+ .+...........+...+++|++.||++ ..+-.||+.+.
T Consensus 120 ~~d~t~l~s~sDd~-----v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD--------g~vrl~DtR~~ 186 (487)
T KOG0310|consen 120 PQDNTMLVSGSDDK-----VVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYD--------GKVRLWDTRSL 186 (487)
T ss_pred ccCCeEEEecCCCc-----eEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCC--------ceEEEEEeccC
Confidence 34788888887442 3344566555531 2222223333344445688999999987 45778887766
Q ss_pred -eeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCC-cccccceeeee-
Q psy9754 175 -TWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELV-VPRHAHSASVL- 251 (306)
Q Consensus 175 -~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p-~~~~~~~~~~~- 251 (306)
.|..- -....|- -.++.+..+.+++..|. +.+-++|+.++. +.+..+. ....-.+++..
T Consensus 187 ~~~v~e-lnhg~pV--e~vl~lpsgs~iasAgG--------------n~vkVWDl~~G~-qll~~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 187 TSRVVE-LNHGCPV--ESVLALPSGSLIASAGG--------------NSVKVWDLTTGG-QLLTSMFNHNKTVTCLRLAS 248 (487)
T ss_pred CceeEE-ecCCCce--eeEEEcCCCCEEEEcCC--------------CeEEEEEecCCc-eehhhhhcccceEEEEEeec
Confidence 44332 2222222 13556665455555443 457788886554 2222222 11112222222
Q ss_pred CCEEEEEeCccCccccccceEEEeeccc
Q psy9754 252 SSQILIIGGVTTVYKRTLKSVECWCFDR 279 (306)
Q Consensus 252 ~~~i~v~GG~~~~~~~~~~~~~~yd~~~ 279 (306)
++.-++-||-+ ..|-+||..+
T Consensus 249 ~~~rLlS~sLD-------~~VKVfd~t~ 269 (487)
T KOG0310|consen 249 DSTRLLSGSLD-------RHVKVFDTTN 269 (487)
T ss_pred CCceEeecccc-------cceEEEEccc
Confidence 55777777777 5688898544
No 80
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.95 E-value=1.1 Score=39.74 Aligned_cols=184 Identities=8% Similarity=-0.007 Sum_probs=94.7
Q ss_pred ceEEEEeCCCCCeeeCCCCCCCccceeeEEECC-EEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEEC
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLD-KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEIN 145 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~ 145 (306)
..++.+|..+++-+.+...+..-. .....-++ +|++....++ ..+++++|+.+++.+++........... ..-+
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~~~~~~~~-~spD 302 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHFGIDTEPT-WAPD 302 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCCCCccceE-ECCC
Confidence 468888988887766655432111 11112244 5554432222 2579999999888776643322111111 2224
Q ss_pred C-EEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeC-CEEEEEcCCCCCCCCCccccccccee
Q psy9754 146 D-KIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNN-EKLYIIGGASQTDATNTQKMYSVSDL 223 (306)
Q Consensus 146 ~-~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~iyi~GG~~~~~~~~~~~~~~~~~~ 223 (306)
+ +|++.....+ ...++.+|..+.+.+.+ ... ...........+ ..|++..+... ...+
T Consensus 303 G~~l~f~sd~~g------~~~iy~~dl~~g~~~~l-t~~--g~~~~~~~~SpDG~~Ia~~~~~~~-----------~~~I 362 (433)
T PRK04922 303 GKSIYFTSDRGG------RPQIYRVAASGGSAERL-TFQ--GNYNARASVSPDGKKIAMVHGSGG-----------QYRI 362 (433)
T ss_pred CCEEEEEECCCC------CceEEEEECCCCCeEEe-ecC--CCCccCEEECCCCCEEEEEECCCC-----------ceeE
Confidence 4 4554432221 24688999888888776 321 112112222223 45555443211 1468
Q ss_pred eEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccc
Q psy9754 224 DVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 224 ~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
+++|+.++....+..-+. ...-...-+++.+++..... ....+++++++...
T Consensus 363 ~v~d~~~g~~~~Lt~~~~--~~~p~~spdG~~i~~~s~~~----g~~~L~~~~~~g~~ 414 (433)
T PRK04922 363 AVMDLSTGSVRTLTPGSL--DESPSFAPNGSMVLYATREG----GRGVLAAVSTDGRV 414 (433)
T ss_pred EEEECCCCCeEECCCCCC--CCCceECCCCCEEEEEEecC----CceEEEEEECCCCc
Confidence 999998888776653221 11112233666555544332 12568888886543
No 81
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.85 E-value=0.63 Score=36.16 Aligned_cols=145 Identities=13% Similarity=0.083 Sum_probs=74.1
Q ss_pred eEEECCEEEEEccCCCCCCCceeEEEeCCCCc--EEecc----CCcccccceeeEEE-CCEEEEEcccCCCCCCCCCccE
Q psy9754 94 FVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT--WEDVA----PLKIARMGMAVAEI-NDKIWIAGGYTGDKMNPVTDKV 166 (306)
Q Consensus 94 ~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--w~~~~----~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 166 (306)
++...+++|+|-| ..+++++..... -+.+. .+|. ...++.... ++++|+|-| +..
T Consensus 12 ~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg----------~~y 73 (194)
T cd00094 12 VTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG----------DKY 73 (194)
T ss_pred EEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC----------CEE
Confidence 3445699999977 557777764111 12221 1221 222222222 388999976 456
Q ss_pred EEEeCCCCee---EEcc--cccCC-cceeEEEEEEe-CCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEe----
Q psy9754 167 ECYDPRTNTW---TTLA--TKLRY-PRYLATLVSVN-NEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKF---- 235 (306)
Q Consensus 167 ~~~d~~~~~W---~~~~--~~~~~-~~~~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~---- 235 (306)
++|+..+... ..+. ..++. .... ++.... ++++|++-|. ..++||...++...
T Consensus 74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iD-AA~~~~~~~~~yfFkg~---------------~y~ry~~~~~~v~~~yP~ 137 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDLGFPPTVKQID-AALRWPDNGKTYFFKGD---------------KYWRYDEKTQKMDPGYPK 137 (194)
T ss_pred EEEcCcccccCCCcchhhcCCCCCCCCcc-EEEEEcCCCEEEEEeCC---------------EEEEEeCCCccccCCCCc
Confidence 6776553221 1110 11111 1222 333343 5899999873 45778765544321
Q ss_pred -ccc-CC-cccccceeeee-CCEEEEEeCccCccccccceEEEeeccccc
Q psy9754 236 -VTE-LV-VPRHAHSASVL-SSQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 236 -~~~-~p-~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
+.. .+ .+..-.++... ++++|+|-| +..+.||..+++
T Consensus 138 ~i~~~w~g~p~~idaa~~~~~~~~yfF~g---------~~y~~~d~~~~~ 178 (194)
T cd00094 138 LIETDFPGVPDKVDAAFRWLDGYYYFFKG---------DQYWRFDPRSKE 178 (194)
T ss_pred chhhcCCCcCCCcceeEEeCCCcEEEEEC---------CEEEEEeCccce
Confidence 111 11 11112233333 489999977 457899988765
No 82
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.74 E-value=1.1 Score=38.28 Aligned_cols=189 Identities=10% Similarity=0.079 Sum_probs=94.5
Q ss_pred eEEEEeCCCCCeeeCCCCCCCccceeeEE--ECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcc-cccceeeEE-
Q psy9754 68 SVWSFNPNNKQWTQEPNMTYPRKIFSFVS--CLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKI-ARMGMAVAE- 143 (306)
Q Consensus 68 ~~~~~d~~t~~W~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~-~~~~~~~~~- 143 (306)
.++.||.++++++.+........-.-++. -++.||+..........-..+..+..+++.+.+...+. ...-+.++.
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~ 95 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVD 95 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEEC
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEe
Confidence 45667889999987765332221112223 25688988654312222334445555578888876663 332223333
Q ss_pred -ECCEEEEEcccCCCCCCCCCccEEEEeCCCC-eeEEcc--------cc---cCCcceeEEEEEEeC-CEEEEEcCCCCC
Q psy9754 144 -INDKIWIAGGYTGDKMNPVTDKVECYDPRTN-TWTTLA--------TK---LRYPRYLATLVSVNN-EKLYIIGGASQT 209 (306)
Q Consensus 144 -~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~-~W~~~~--------~~---~~~~~~~~~~~~~~~-~~iyi~GG~~~~ 209 (306)
-+..||+.. +. .+.+..|++..+ +-.... .+ .+..-.-|.+....+ ..+|+..-.
T Consensus 96 ~~g~~l~van-y~-------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--- 164 (345)
T PF10282_consen 96 PDGRFLYVAN-YG-------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--- 164 (345)
T ss_dssp TTSSEEEEEE-TT-------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT---
T ss_pred cCCCEEEEEE-cc-------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC---
Confidence 234566653 11 356778877763 322220 00 111122344444444 456665421
Q ss_pred CCCCcccccccceeeEEECCCCc--eEecccC--Ccccccceeeee--CCEEEEEeCccCccccccceEEEeecc--ccc
Q psy9754 210 DATNTQKMYSVSDLDVFVSNEKE--WKFVTEL--VVPRHAHSASVL--SSQILIIGGVTTVYKRTLKSVECWCFD--RQA 281 (306)
Q Consensus 210 ~~~~~~~~~~~~~~~~y~~~~~~--W~~~~~~--p~~~~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~yd~~--~~~ 281 (306)
...+++|+.+... .+....+ |..-.-..++.. +..+|++.... +.+.+|+.. ++.
T Consensus 165 ----------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-------~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 165 ----------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-------NTVSVFDYDPSDGS 227 (345)
T ss_dssp ----------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT-------TEEEEEEEETTTTE
T ss_pred ----------CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC-------CcEEEEeecccCCc
Confidence 1567888887665 6553322 322111123332 45788887655 567777766 555
Q ss_pred eec
Q psy9754 282 WIK 284 (306)
Q Consensus 282 W~~ 284 (306)
++.
T Consensus 228 ~~~ 230 (345)
T PF10282_consen 228 LTE 230 (345)
T ss_dssp EEE
T ss_pred eeE
Confidence 533
No 83
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.36 E-value=1.2 Score=35.87 Aligned_cols=146 Identities=10% Similarity=0.136 Sum_probs=67.0
Q ss_pred CCEEEEEccCCCCCCCceeEEEeCCCCcEE-eccCCcccccceeeEEE-CCEEEEEcccCCCCCCCCCccEEEEeCCCCe
Q psy9754 98 LDKIYAIGGQDCKTLLSSVECYDPVAHTWE-DVAPLKIARMGMAVAEI-NDKIWIAGGYTGDKMNPVTDKVECYDPRTNT 175 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~-~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~ 175 (306)
+++.+++++.+ ..+.+||..+++.. .+... ...-..+... ++.+++.++. .+.+..||+.+..
T Consensus 62 ~~~~l~~~~~~-----~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~ 126 (289)
T cd00200 62 DGTYLASGSSD-----KTIRLWDLETGECVRTLTGH--TSYVSSVAFSPDGRILSSSSR--------DKTIKVWDVETGK 126 (289)
T ss_pred CCCEEEEEcCC-----CeEEEEEcCcccceEEEecc--CCcEEEEEEcCCCCEEEEecC--------CCeEEEEECCCcE
Confidence 44455555542 55778888775321 12111 1111122222 3455555541 2568889988554
Q ss_pred eEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCccc-ccceeeee-CC
Q psy9754 176 WTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPR-HAHSASVL-SS 253 (306)
Q Consensus 176 W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~-~~~~~~~~-~~ 253 (306)
-....... ...-.++....++.+++.+... ..+.+||+.+.+- +..+.... ...++... ++
T Consensus 127 ~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~-------------~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~ 189 (289)
T cd00200 127 CLTTLRGH--TDWVNSVAFSPDGTFVASSSQD-------------GTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDG 189 (289)
T ss_pred EEEEeccC--CCcEEEEEEcCcCCEEEEEcCC-------------CcEEEEEcccccc--ceeEecCccccceEEECCCc
Confidence 33221211 1111223333334555554422 4578888864332 11111111 12222332 44
Q ss_pred EEEEEeCccCccccccceEEEeeccccce
Q psy9754 254 QILIIGGVTTVYKRTLKSVECWCFDRQAW 282 (306)
Q Consensus 254 ~i~v~GG~~~~~~~~~~~~~~yd~~~~~W 282 (306)
..+++++.+ ..+.+||..+.+-
T Consensus 190 ~~l~~~~~~-------~~i~i~d~~~~~~ 211 (289)
T cd00200 190 EKLLSSSSD-------GTIKLWDLSTGKC 211 (289)
T ss_pred CEEEEecCC-------CcEEEEECCCCce
Confidence 455665554 4678888876444
No 84
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.33 E-value=2 Score=38.34 Aligned_cols=145 Identities=9% Similarity=-0.021 Sum_probs=77.3
Q ss_pred ceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEE
Q psy9754 114 SSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLV 193 (306)
Q Consensus 114 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~ 193 (306)
..++++|..+++-+.+...+.........--+++|++.....+ ...++.+|+++.+.+.+ ........ ...
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~~~~l-t~~~~~~~--~p~ 312 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKALTRI-TRHRAIDT--EPS 312 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCCeEEC-ccCCCCcc--ceE
Confidence 5789999988877666554432222222222445665543221 35799999999988877 33211111 122
Q ss_pred EEeCC-EEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeCC-EEEEEeCccCccccccce
Q psy9754 194 SVNNE-KLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSS-QILIIGGVTTVYKRTLKS 271 (306)
Q Consensus 194 ~~~~~-~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~ 271 (306)
...++ .|++...... ...++.+|+++++++.+.. ...........-++ .|++.+.... ...
T Consensus 313 wSpDG~~I~f~s~~~g-----------~~~Iy~~dl~~g~~~~Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g-----~~~ 375 (448)
T PRK04792 313 WHPDGKSLIFTSERGG-----------KPQIYRVNLASGKVSRLTF-EGEQNLGGSITPDGRSMIMVNRTNG-----KFN 375 (448)
T ss_pred ECCCCCEEEEEECCCC-----------CceEEEEECCCCCEEEEec-CCCCCcCeeECCCCCEEEEEEecCC-----ceE
Confidence 22234 4554432211 1568999998888887642 11111111222355 4444432221 246
Q ss_pred EEEeeccccceec
Q psy9754 272 VECWCFDRQAWIK 284 (306)
Q Consensus 272 ~~~yd~~~~~W~~ 284 (306)
++++|+++++.+.
T Consensus 376 I~~~dl~~g~~~~ 388 (448)
T PRK04792 376 IARQDLETGAMQV 388 (448)
T ss_pred EEEEECCCCCeEE
Confidence 8889998887655
No 85
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.28 E-value=2.3 Score=38.79 Aligned_cols=119 Identities=13% Similarity=0.173 Sum_probs=66.5
Q ss_pred eeeEEECCEEEEEccCCCCCCCceeEEEeCCCCc--EEeccCCcccc--------cceeeEEECCEEEEEcccCCCCCCC
Q psy9754 92 FSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT--WEDVAPLKIAR--------MGMAVAEINDKIWIAGGYTGDKMNP 161 (306)
Q Consensus 92 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--w~~~~~~~~~~--------~~~~~~~~~~~iyv~GG~~~~~~~~ 161 (306)
.+.+..++.||+.... ..++.+|..+++ |+.-...+... .....++.+++||+...
T Consensus 63 stPvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------- 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------- 128 (527)
T ss_pred cCCEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC--------
Confidence 3445668999997542 358889988775 87543322111 11234567888887432
Q ss_pred CCccEEEEeCCCCe--eEEcccccCCc-ceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCc--eE
Q psy9754 162 VTDKVECYDPRTNT--WTTLATKLRYP-RYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKE--WK 234 (306)
Q Consensus 162 ~~~~~~~~d~~~~~--W~~~~~~~~~~-~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~--W~ 234 (306)
...+.++|.++.+ |+.-....... ....+.++.+ +.||+-....... .-..+..||.++.+ |+
T Consensus 129 -dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~-g~Vivg~~~~~~~--------~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 129 -DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVK-GKVITGISGGEFG--------VRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred -CCEEEEEECCCCCEEeecccccccccccccCCcEEEC-CEEEEeecccccC--------CCcEEEEEECCCCceeEe
Confidence 3578999998776 86542222111 1112334444 7776643221111 11467888888764 66
No 86
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.15 E-value=2.2 Score=37.87 Aligned_cols=191 Identities=9% Similarity=-0.066 Sum_probs=95.0
Q ss_pred ceEEEEeCCCCCeeeCCCCCCCccceeeEEECC-EEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEEC
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLD-KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEIN 145 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~ 145 (306)
..++.+|+.+++.+.+...+..-.. ....-++ +|++....+. ..+++++|..++..+++...+.........--+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~-~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG 301 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFA-PRFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDG 301 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccC-cEECCCCCEEEEEEecCC---CceEEEEECCCCceEEccCCCCccCceeEcCCC
Confidence 5789999998887777654432111 1112244 4544433222 367899999988877765433221111111123
Q ss_pred CEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCC-EEEEEcCCCCCCCCCcccccccceee
Q psy9754 146 DKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNE-KLYIIGGASQTDATNTQKMYSVSDLD 224 (306)
Q Consensus 146 ~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~iyi~GG~~~~~~~~~~~~~~~~~~~ 224 (306)
.+|++.....+ ...++.+|......+.+ ... ..... ......++ .|++..... . ...++
T Consensus 302 ~~i~f~s~~~g------~~~Iy~~d~~g~~~~~l-t~~-~~~~~-~~~~SpdG~~ia~~~~~~-~----------~~~i~ 361 (435)
T PRK05137 302 SQIVFESDRSG------SPQLYVMNADGSNPRRI-SFG-GGRYS-TPVWSPRGDLIAFTKQGG-G----------QFSIG 361 (435)
T ss_pred CEEEEEECCCC------CCeEEEEECCCCCeEEe-ecC-CCccc-CeEECCCCCEEEEEEcCC-C----------ceEEE
Confidence 44554432111 24789999888777776 321 11111 12222234 454443211 1 14678
Q ss_pred EEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccceec
Q psy9754 225 VFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIK 284 (306)
Q Consensus 225 ~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~ 284 (306)
++|++......+..- .....-...-|++.+++....... .....++++|++...-..
T Consensus 362 ~~d~~~~~~~~lt~~--~~~~~p~~spDG~~i~~~~~~~~~-~~~~~L~~~dl~g~~~~~ 418 (435)
T PRK05137 362 VMKPDGSGERILTSG--FLVEGPTWAPNGRVIMFFRQTPGS-GGAPKLYTVDLTGRNERE 418 (435)
T ss_pred EEECCCCceEeccCC--CCCCCCeECCCCCEEEEEEccCCC-CCcceEEEEECCCCceEE
Confidence 888876665544321 111111222266555543322110 001468899987766555
No 87
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.12 E-value=1.8 Score=36.70 Aligned_cols=94 Identities=7% Similarity=0.045 Sum_probs=43.1
Q ss_pred ceEEEEeCC-CCCeeeCCCCCCCccceeeEEE-CC-EEEEEccCCCCCCCceeEEEeCCCCc--EEeccCCcccccceee
Q psy9754 67 NSVWSFNPN-NKQWTQEPNMTYPRKIFSFVSC-LD-KIYAIGGQDCKTLLSSVECYDPVAHT--WEDVAPLKIARMGMAV 141 (306)
Q Consensus 67 ~~~~~~d~~-t~~W~~~~~~~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~d~~~~~--w~~~~~~~~~~~~~~~ 141 (306)
..+..|+.. +++++.+...+.+..-..++.. ++ .+|+..- . ...+.+|+..++. .+.+..++.....|.+
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~-~----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~ 131 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASY-N----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSA 131 (330)
T ss_pred CcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEc-C----CCeEEEEEECCCCCCCCceeeccCCCcccEe
Confidence 445455553 5566555433332222223333 44 5666642 2 2556667765321 1122222222222333
Q ss_pred EEE-C-CEEEEEcccCCCCCCCCCccEEEEeCCC
Q psy9754 142 AEI-N-DKIWIAGGYTGDKMNPVTDKVECYDPRT 173 (306)
Q Consensus 142 ~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~d~~~ 173 (306)
+.. + +.+|+..- . .+.+.+||+.+
T Consensus 132 ~~~p~g~~l~v~~~-~-------~~~v~v~d~~~ 157 (330)
T PRK11028 132 NIDPDNRTLWVPCL-K-------EDRIRLFTLSD 157 (330)
T ss_pred EeCCCCCEEEEeeC-C-------CCEEEEEEECC
Confidence 333 3 46666542 1 36788998876
No 88
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.90 E-value=2.4 Score=37.15 Aligned_cols=183 Identities=8% Similarity=-0.035 Sum_probs=91.9
Q ss_pred ceEEEEeCCCCCeeeCCCCCCCccceeeEEE-CC-EEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEE
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC-LD-KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEI 144 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~ 144 (306)
..++.+|..+++-..+........ +.+.. ++ .|++.....+ ...++.+|..++..+++..............-
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~--~~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNG--APAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPD 288 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCcc--ceEECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCCCCCCCEEECCC
Confidence 468888988877665544332221 12222 44 5655433222 25788999998887776543321111111112
Q ss_pred CCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceee
Q psy9754 145 NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLD 224 (306)
Q Consensus 145 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~ 224 (306)
+.+|++...... ...++.+|..+..++.+... . ..........+++.+++...... ...++
T Consensus 289 g~~l~~~s~~~g------~~~iy~~d~~~~~~~~l~~~-~--~~~~~~~~spdg~~i~~~~~~~~----------~~~i~ 349 (417)
T TIGR02800 289 GKSIAFTSDRGG------SPQIYMMDADGGEVRRLTFR-G--GYNASPSWSPDGDLIAFVHREGG----------GFNIA 349 (417)
T ss_pred CCEEEEEECCCC------CceEEEEECCCCCEEEeecC-C--CCccCeEECCCCCEEEEEEccCC----------ceEEE
Confidence 345555432221 24789999988888777221 1 11112223334555555443221 15789
Q ss_pred EEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccc
Q psy9754 225 VFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDR 279 (306)
Q Consensus 225 ~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~ 279 (306)
.+|+.+..++.+..... ........+++.+++...... ...+++++.+.
T Consensus 350 ~~d~~~~~~~~l~~~~~--~~~p~~spdg~~l~~~~~~~~----~~~l~~~~~~g 398 (417)
T TIGR02800 350 VMDLDGGGERVLTDTGL--DESPSFAPNGRMILYATTRGG----RGVLGLVSTDG 398 (417)
T ss_pred EEeCCCCCeEEccCCCC--CCCceECCCCCEEEEEEeCCC----cEEEEEEECCC
Confidence 99998877766653211 111122335554444333221 14566666543
No 89
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=94.88 E-value=1.6 Score=34.99 Aligned_cols=136 Identities=11% Similarity=0.161 Sum_probs=62.7
Q ss_pred eceEEEEe---CCCCCeee--CCCCCC-------CccceeeEEECCEEEEEccCCCCCCCceeE--EEeC----CCCcEE
Q psy9754 66 SNSVWSFN---PNNKQWTQ--EPNMTY-------PRKIFSFVSCLDKIYAIGGQDCKTLLSSVE--CYDP----VAHTWE 127 (306)
Q Consensus 66 ~~~~~~~d---~~t~~W~~--~~~~~~-------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~--~~d~----~~~~w~ 127 (306)
....+.++ ...+.|+. ++..+. .-..|+.+.+++.-|.+|=...+.....+- .|.. ....-+
T Consensus 101 m~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vr 180 (367)
T PF12217_consen 101 MVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVR 180 (367)
T ss_dssp EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EE
T ss_pred hhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceee
Confidence 33444444 45677864 443332 234678888888778887544442223322 2221 122222
Q ss_pred -eccC-CcccccceeeEEECCEEEEEc-ccCCCCCCCCCccEEEEeCCCCeeEEcccccCCc-ceeEEEEEEeCCEEEEE
Q psy9754 128 -DVAP-LKIARMGMAVAEINDKIWIAG-GYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYP-RYLATLVSVNNEKLYII 203 (306)
Q Consensus 128 -~~~~-~~~~~~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~iyi~ 203 (306)
+++. ....-+..++-.+++.+|+.. |...... -+.+.+-+..-..|+.+ ..+... ....-.+..+ +.||+|
T Consensus 181 r~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~---GS~L~rs~d~G~~w~sl-rfp~nvHhtnlPFakvg-D~l~mF 255 (367)
T PF12217_consen 181 RIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNP---GSSLHRSDDNGQNWSSL-RFPNNVHHTNLPFAKVG-DVLYMF 255 (367)
T ss_dssp EE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS------EEEEESSTTSS-EEE-E-TT---SS---EEEET-TEEEEE
T ss_pred eechhhhccccccchhhhhCCEEEEEEcCcCCCCC---cceeeeecccCCchhhc-cccccccccCCCceeeC-CEEEEE
Confidence 2322 223334456667899999886 4433222 35677777777889998 322111 1112234445 899999
Q ss_pred cCC
Q psy9754 204 GGA 206 (306)
Q Consensus 204 GG~ 206 (306)
|..
T Consensus 256 gsE 258 (367)
T PF12217_consen 256 GSE 258 (367)
T ss_dssp EE-
T ss_pred ecc
Confidence 864
No 90
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.88 E-value=2.7 Score=37.50 Aligned_cols=187 Identities=4% Similarity=-0.050 Sum_probs=96.6
Q ss_pred eceEEEEeCCCCCeeeCCCCCCCccceeeEEE-CC-EEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEE
Q psy9754 66 SNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC-LD-KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAE 143 (306)
Q Consensus 66 ~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~ 143 (306)
...+|.+|+.+++-+.+...+..- ...... ++ .|++....+. ..+++.+|..+++.+++.............-
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~--~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSp 315 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGIN--GAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHRAIDTEPSWHP 315 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCc--CCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCCCccceEECC
Confidence 357999999888776665543221 122222 44 5655533222 3679999999998887754322111111111
Q ss_pred ECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCC-EEEEEcCCCCCCCCCcccccccce
Q psy9754 144 INDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNE-KLYIIGGASQTDATNTQKMYSVSD 222 (306)
Q Consensus 144 ~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~iyi~GG~~~~~~~~~~~~~~~~~ 222 (306)
-+..|++...... ...++.+|+++.+++.+ ... ...........++ .|++.+. ... ...
T Consensus 316 DG~~I~f~s~~~g------~~~Iy~~dl~~g~~~~L-t~~--g~~~~~~~~SpDG~~l~~~~~-~~g----------~~~ 375 (448)
T PRK04792 316 DGKSLIFTSERGG------KPQIYRVNLASGKVSRL-TFE--GEQNLGGSITPDGRSMIMVNR-TNG----------KFN 375 (448)
T ss_pred CCCEEEEEECCCC------CceEEEEECCCCCEEEE-ecC--CCCCcCeeECCCCCEEEEEEe-cCC----------ceE
Confidence 2345555432211 25789999999888877 311 1111112223334 4544432 211 156
Q ss_pred eeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccceec
Q psy9754 223 LDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIK 284 (306)
Q Consensus 223 ~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~ 284 (306)
++.+|+.+...+.+..-.. ...-...-+++.+++...... ...+++++. ++.+..
T Consensus 376 I~~~dl~~g~~~~lt~~~~--d~~ps~spdG~~I~~~~~~~g----~~~l~~~~~-~G~~~~ 430 (448)
T PRK04792 376 IARQDLETGAMQVLTSTRL--DESPSVAPNGTMVIYSTTYQG----KQVLAAVSI-DGRFKA 430 (448)
T ss_pred EEEEECCCCCeEEccCCCC--CCCceECCCCCEEEEEEecCC----ceEEEEEEC-CCCceE
Confidence 8889998888776653221 111122335554444333221 145777776 445544
No 91
>PTZ00421 coronin; Provisional
Probab=94.85 E-value=2.9 Score=37.74 Aligned_cols=153 Identities=12% Similarity=0.153 Sum_probs=71.7
Q ss_pred CEEEEEccCCCCCCCceeEEEeCCCCcEE-eccCCcccccceeeE-EECCEEEEEcccCCCCCCCCCccEEEEeCCCCee
Q psy9754 99 DKIYAIGGQDCKTLLSSVECYDPVAHTWE-DVAPLKIARMGMAVA-EINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTW 176 (306)
Q Consensus 99 ~~iyv~GG~~~~~~~~~~~~~d~~~~~w~-~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W 176 (306)
+.+++.|+.+ ..+.+||..+++-. .+....... ..++ .-++.+++.|+.+ ..+.+||+.+.+-
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~~l~~h~~~V--~sla~spdG~lLatgs~D--------g~IrIwD~rsg~~ 202 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVEVIKCHSDQI--TSLEWNLDGSLLCTTSKD--------KKLNIIDPRDGTI 202 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEEEEcCCCCce--EEEEEECCCCEEEEecCC--------CEEEEEECCCCcE
Confidence 3566667654 45778888876532 121111111 1111 2256666666543 4688899887653
Q ss_pred -EEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcc-cccceeeee--C
Q psy9754 177 -TTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVP-RHAHSASVL--S 252 (306)
Q Consensus 177 -~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~-~~~~~~~~~--~ 252 (306)
..+ ......... ..+...++..++..|.+... -..+.+||+.+..- .+...... .....+... +
T Consensus 203 v~tl-~~H~~~~~~-~~~w~~~~~~ivt~G~s~s~---------Dr~VklWDlr~~~~-p~~~~~~d~~~~~~~~~~d~d 270 (493)
T PTZ00421 203 VSSV-EAHASAKSQ-RCLWAKRKDLIITLGCSKSQ---------QRQIMLWDTRKMAS-PYSTVDLDQSSALFIPFFDED 270 (493)
T ss_pred EEEE-ecCCCCcce-EEEEcCCCCeEEEEecCCCC---------CCeEEEEeCCCCCC-ceeEeccCCCCceEEEEEcCC
Confidence 222 111111111 12222223334444432111 15678888864331 11110000 011112222 5
Q ss_pred CEEEEEeCccCccccccceEEEeeccccceec
Q psy9754 253 SQILIIGGVTTVYKRTLKSVECWCFDRQAWIK 284 (306)
Q Consensus 253 ~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~ 284 (306)
+.++++||... ..+.+||+.+++...
T Consensus 271 ~~~L~lggkgD------g~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 271 TNLLYIGSKGE------GNIRCFELMNERLTF 296 (493)
T ss_pred CCEEEEEEeCC------CeEEEEEeeCCceEE
Confidence 67777777532 568888888776543
No 92
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.85 E-value=2.9 Score=37.75 Aligned_cols=62 Identities=10% Similarity=0.156 Sum_probs=35.7
Q ss_pred eceEEEEeCCCCC--eeeCCCCCC-Cc--cceeeEEECCEEEEEccCCCC----CCCceeEEEeCCCCc--EEe
Q psy9754 66 SNSVWSFNPNNKQ--WTQEPNMTY-PR--KIFSFVSCLDKIYAIGGQDCK----TLLSSVECYDPVAHT--WED 128 (306)
Q Consensus 66 ~~~~~~~d~~t~~--W~~~~~~~~-~~--~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~d~~~~~--w~~ 128 (306)
...++.+|.+|++ |+.-...+. .. ...+.+..++.+|+. ..... .....++.+|..+++ |+.
T Consensus 119 ~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg-~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 119 DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIG-SSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEe-ccccccccCCCCcEEEEEECCCCceeeEe
Confidence 4578999998876 875433221 11 123344456666654 22211 123578899998876 864
No 93
>KOG0316|consensus
Probab=94.62 E-value=1.8 Score=34.27 Aligned_cols=148 Identities=14% Similarity=0.193 Sum_probs=94.0
Q ss_pred CCEEEEEccCCCCCCCceeEEEeCCCCcEE-eccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCee
Q psy9754 98 LDKIYAIGGQDCKTLLSSVECYDPVAHTWE-DVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTW 176 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~-~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W 176 (306)
+++..+..|.+ +.+-.+||..+.-- .......+....+...-+.++.-.|| -..++.+|..+.+-
T Consensus 28 dGnY~ltcGsd-----rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg---------Dk~v~vwDV~TGkv 93 (307)
T KOG0316|consen 28 DGNYCLTCGSD-----RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG---------DKAVQVWDVNTGKV 93 (307)
T ss_pred CCCEEEEcCCC-----ceEEeecccccceeeeecCCCceeeeccccccccccccCCC---------CceEEEEEcccCee
Confidence 55666666644 44555677766632 23333344444444444556666665 35689999999875
Q ss_pred EEcccccCCcceeEEEEEEeC-CEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeCCEE
Q psy9754 177 TTLATKLRYPRYLATLVSVNN-EKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQI 255 (306)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~-~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i 255 (306)
.+- -.-..+. .-.+.+++ ..+++-|+.. ..+..+|-.+...+++..+...+.....+.+.++.
T Consensus 94 ~Rr-~rgH~aq--VNtV~fNeesSVv~SgsfD-------------~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~he 157 (307)
T KOG0316|consen 94 DRR-FRGHLAQ--VNTVRFNEESSVVASGSFD-------------SSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHE 157 (307)
T ss_pred eee-cccccce--eeEEEecCcceEEEecccc-------------ceeEEEEcccCCCCccchhhhhcCceeEEEecccE
Confidence 433 1111111 22445553 4566666654 67899999999999998888888888888888888
Q ss_pred EEEeCccCccccccceEEEeeccccce
Q psy9754 256 LIIGGVTTVYKRTLKSVECWCFDRQAW 282 (306)
Q Consensus 256 ~v~GG~~~~~~~~~~~~~~yd~~~~~W 282 (306)
.+.|..+ .++-.||+..++=
T Consensus 158 IvaGS~D-------GtvRtydiR~G~l 177 (307)
T KOG0316|consen 158 IVAGSVD-------GTVRTYDIRKGTL 177 (307)
T ss_pred EEeeccC-------CcEEEEEeeccee
Confidence 8888777 3566777766553
No 94
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.54 E-value=2 Score=34.46 Aligned_cols=174 Identities=10% Similarity=0.107 Sum_probs=78.7
Q ss_pred ceEEEEeCCCCCeeeCCCCCCCccceeeEEE-CCEEEEEccCCCCCCCceeEEEeCCCCcEE-eccCCcccccceeeEEE
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC-LDKIYAIGGQDCKTLLSSVECYDPVAHTWE-DVAPLKIARMGMAVAEI 144 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~-~~~~~~~~~~~~~~~~~ 144 (306)
..+..||..+++-...-... .....++... ++.+++.++.+ ..+.+||..+.+-. .+.. ....-..+...
T Consensus 73 ~~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~ 144 (289)
T cd00200 73 KTIRLWDLETGECVRTLTGH-TSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTLRG--HTDWVNSVAFS 144 (289)
T ss_pred CeEEEEEcCcccceEEEecc-CCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEecc--CCCcEEEEEEc
Confidence 56778887764321111111 1111222222 34566665522 45778888755422 2221 11111222333
Q ss_pred C-CEEEEEcccCCCCCCCCCccEEEEeCCCCee-EEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccce
Q psy9754 145 N-DKIWIAGGYTGDKMNPVTDKVECYDPRTNTW-TTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSD 222 (306)
Q Consensus 145 ~-~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W-~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~ 222 (306)
. +.+++.+. . .+.+..||..+.+- ..+ .. .. ..-.++....++..+++++.. ..
T Consensus 145 ~~~~~l~~~~-~-------~~~i~i~d~~~~~~~~~~-~~-~~-~~i~~~~~~~~~~~l~~~~~~-------------~~ 200 (289)
T cd00200 145 PDGTFVASSS-Q-------DGTIKLWDLRTGKCVATL-TG-HT-GEVNSVAFSPDGEKLLSSSSD-------------GT 200 (289)
T ss_pred CcCCEEEEEc-C-------CCcEEEEEccccccceeE-ec-Cc-cccceEEECCCcCEEEEecCC-------------Cc
Confidence 3 44444443 1 24688888875432 222 11 11 111223333445455555542 45
Q ss_pred eeEEECCCCceEecccC-Ccccccceeeee-CCEEEEEeCccCccccccceEEEeeccccc
Q psy9754 223 LDVFVSNEKEWKFVTEL-VVPRHAHSASVL-SSQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 223 ~~~y~~~~~~W~~~~~~-p~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
+.+||....... ..+ .......++... ++.+++.++.+ ..+.+||..+.+
T Consensus 201 i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~i~i~~~~~~~ 252 (289)
T cd00200 201 IKLWDLSTGKCL--GTLRGHENGVNSVAFSPDGYLLASGSED-------GTIRVWDLRTGE 252 (289)
T ss_pred EEEEECCCCcee--cchhhcCCceEEEEEcCCCcEEEEEcCC-------CcEEEEEcCCce
Confidence 788888764332 222 111122223333 45666665534 468888887544
No 95
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.53 E-value=1.7 Score=35.36 Aligned_cols=119 Identities=12% Similarity=0.225 Sum_probs=72.2
Q ss_pred eeeEEE-CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeE--EECCEEEEEcccCCCCCCCCCccEEE
Q psy9754 92 FSFVSC-LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVA--EINDKIWIAGGYTGDKMNPVTDKVEC 168 (306)
Q Consensus 92 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~ 168 (306)
..+|+. ++.+|+..=.. +-+-..|+.+..-+.++.......+...+ --.+++++.- .. ...+.+
T Consensus 192 yGi~atpdGsvwyaslag-----naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~witt----wg----~g~l~r 258 (353)
T COG4257 192 YGICATPDGSVWYASLAG-----NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITT----WG----TGSLHR 258 (353)
T ss_pred cceEECCCCcEEEEeccc-----cceEEcccccCCcceecCCCcccccccccccCccCcEEEec----cC----CceeeE
Confidence 344443 88898883322 44566788888666655433222222222 2346788761 11 468999
Q ss_pred EeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecc
Q psy9754 169 YDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVT 237 (306)
Q Consensus 169 ~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~ 237 (306)
||+.+.+|.+-+.+-..+|-. ++-+...+++++---. ...+.++|+.+.+++.++
T Consensus 259 fdPs~~sW~eypLPgs~arpy-s~rVD~~grVW~sea~-------------agai~rfdpeta~ftv~p 313 (353)
T COG4257 259 FDPSVTSWIEYPLPGSKARPY-SMRVDRHGRVWLSEAD-------------AGAIGRFDPETARFTVLP 313 (353)
T ss_pred eCcccccceeeeCCCCCCCcc-eeeeccCCcEEeeccc-------------cCceeecCcccceEEEec
Confidence 999999999983333344543 4444445788874221 256899999999887654
No 96
>PRK13684 Ycf48-like protein; Provisional
Probab=94.50 E-value=2.7 Score=35.82 Aligned_cols=163 Identities=13% Similarity=0.193 Sum_probs=80.8
Q ss_pred eEEEEeCCCCCeeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEE-EeCCCCcEEeccCCcccccceeeEE-EC
Q psy9754 68 SVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVEC-YDPVAHTWEDVAPLKIARMGMAVAE-IN 145 (306)
Q Consensus 68 ~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~-~d~~~~~w~~~~~~~~~~~~~~~~~-~~ 145 (306)
.+++=+-.=.+|+.+.... ....+.+....+..+++.|... .++. .|....+|+.++. +..+.-..++. -+
T Consensus 153 ~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G-----~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~ 225 (334)
T PRK13684 153 AIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRG-----NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPD 225 (334)
T ss_pred eEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCc-----eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCC
Confidence 4555544446899886533 2233444444444444433222 2222 2445568998865 33333333333 46
Q ss_pred CEEEEEcccCCCCCCCCCccEEEEe-C-CCCeeEEcccccCCcc-eeEEEEEEeCCEEEEEcCCCCCCCCCcccccccce
Q psy9754 146 DKIWIAGGYTGDKMNPVTDKVECYD-P-RTNTWTTLATKLRYPR-YLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSD 222 (306)
Q Consensus 146 ~~iyv~GG~~~~~~~~~~~~~~~~d-~-~~~~W~~~~~~~~~~~-~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~ 222 (306)
+.++++|.. -...+. . .-.+|+.+..+..... ...++....++.++++|... .
T Consensus 226 g~~~~vg~~----------G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G--------------~ 281 (334)
T PRK13684 226 GNLWMLARG----------GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG--------------T 281 (334)
T ss_pred CCEEEEecC----------CEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCC--------------e
Confidence 788888642 122331 2 3347997622111111 22334444457888887542 1
Q ss_pred eeEEECCCCceEeccc-CCcccccceeeee-CCEEEEEeCc
Q psy9754 223 LDVFVSNEKEWKFVTE-LVVPRHAHSASVL-SSQILIIGGV 261 (306)
Q Consensus 223 ~~~y~~~~~~W~~~~~-~p~~~~~~~~~~~-~~~i~v~GG~ 261 (306)
+..-.-.-.+|+.+.. -..+.....++.. +++.|++|..
T Consensus 282 v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 282 LLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred EEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCC
Confidence 2222223468998753 1222344455555 6677777654
No 97
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.25 E-value=2.6 Score=34.63 Aligned_cols=135 Identities=14% Similarity=0.086 Sum_probs=62.9
Q ss_pred ceEEEEeCCCCCeee-CCCCCCCccceeeEEE-C-CEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEE
Q psy9754 67 NSVWSFNPNNKQWTQ-EPNMTYPRKIFSFVSC-L-DKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAE 143 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~-~~~~~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~ 143 (306)
+.+..||..+++... +.....+ ..++.. + +.+|+.++.+ ..+.++|+.+.+- +..++.......++.
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~--~~~~~~~~~~~~~~~ 122 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSGPDP---ELFALHPNGKILYIANEDD-----NLVTVIDIETRKV--LAEIPVGVEPEGMAV 122 (300)
T ss_pred CeEEEEECCCCcEEEeccCCCCc---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCeE--EeEeeCCCCcceEEE
Confidence 568889988876543 2221111 122222 3 4566665422 4688889887542 211211111122222
Q ss_pred -ECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccce
Q psy9754 144 -INDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSD 222 (306)
Q Consensus 144 -~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~ 222 (306)
-++.+++++... .+.+..+|..+.+-.........++ .+....+++.+++++... ..
T Consensus 123 ~~dg~~l~~~~~~-------~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~s~dg~~l~~~~~~~------------~~ 180 (300)
T TIGR03866 123 SPDGKIVVNTSET-------TNMAHFIDTKTYEIVDNVLVDQRPR---FAEFTADGKELWVSSEIG------------GT 180 (300)
T ss_pred CCCCCEEEEEecC-------CCeEEEEeCCCCeEEEEEEcCCCcc---EEEECCCCCEEEEEcCCC------------CE
Confidence 356666655322 1345667877655332101111121 222333455544443321 45
Q ss_pred eeEEECCCCce
Q psy9754 223 LDVFVSNEKEW 233 (306)
Q Consensus 223 ~~~y~~~~~~W 233 (306)
+.+||+.+.+.
T Consensus 181 v~i~d~~~~~~ 191 (300)
T TIGR03866 181 VSVIDVATRKV 191 (300)
T ss_pred EEEEEcCccee
Confidence 78888876543
No 98
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.22 E-value=3.8 Score=36.38 Aligned_cols=146 Identities=12% Similarity=-0.052 Sum_probs=73.6
Q ss_pred ceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEE
Q psy9754 114 SSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLV 193 (306)
Q Consensus 114 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~ 193 (306)
..++++|+.+++.+.+...+.........--+.+|++.....+ ...++.+|+++.....+ ...+.... ...
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~L-t~~~~~~~--~~~ 296 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGTTTRL-TDSPAIDT--SPS 296 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC------CceEEEEECCCCceEEc-cCCCCccC--cee
Confidence 6799999999888777655432222222222345555432221 35789999998887777 33221111 122
Q ss_pred EEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeCC-EEEEEeCccCccccccceE
Q psy9754 194 SVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSS-QILIIGGVTTVYKRTLKSV 272 (306)
Q Consensus 194 ~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~ 272 (306)
...+++-+++...... ...++++|.+....+.+.... .........-++ .|++...... ...+
T Consensus 297 ~spDG~~i~f~s~~~g----------~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~-----~~~i 360 (435)
T PRK05137 297 YSPDGSQIVFESDRSG----------SPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGGG-----QFSI 360 (435)
T ss_pred EcCCCCEEEEEECCCC----------CCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCCC-----ceEE
Confidence 2233443333321111 146888998877766654321 111111122244 4444432111 1467
Q ss_pred EEeeccccceec
Q psy9754 273 ECWCFDRQAWIK 284 (306)
Q Consensus 273 ~~yd~~~~~W~~ 284 (306)
+++|++++....
T Consensus 361 ~~~d~~~~~~~~ 372 (435)
T PRK05137 361 GVMKPDGSGERI 372 (435)
T ss_pred EEEECCCCceEe
Confidence 888876655433
No 99
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.96 E-value=3.2 Score=34.67 Aligned_cols=172 Identities=11% Similarity=0.184 Sum_probs=77.1
Q ss_pred CCCCeeeCCCCCCCccceeeEEE-CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCc-cc--ccceeeEEECCEEEE
Q psy9754 75 NNKQWTQEPNMTYPRKIFSFVSC-LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLK-IA--RMGMAVAEINDKIWI 150 (306)
Q Consensus 75 ~t~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~-~~--~~~~~~~~~~~~iyv 150 (306)
....|+.+.. |.......+... ++.-|++|-. ..+++=+-.-.+|+....-. .. .....+...++..|+
T Consensus 4 ~~~~W~~v~l-~t~~~l~dV~F~d~~~G~~VG~~------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~i 76 (302)
T PF14870_consen 4 SGNSWQQVSL-PTDKPLLDVAFVDPNHGWAVGAY------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWI 76 (302)
T ss_dssp SS--EEEEE--S-SS-EEEEEESSSS-EEEEETT------TEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEE
T ss_pred cCCCcEEeec-CCCCceEEEEEecCCEEEEEecC------CEEEEECCCCccccccccCCCccceeeEEEEEecCCceEE
Confidence 3567988763 444444555555 4678888753 22333334456798875322 22 222344456788998
Q ss_pred EcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCC
Q psy9754 151 AGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNE 230 (306)
Q Consensus 151 ~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~ 230 (306)
+|- ...+..-.-.-.+|++++.+.+.+........++++.+++++.. ..+++=.=.-
T Consensus 77 vG~---------~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~--------------G~iy~T~DgG 133 (302)
T PF14870_consen 77 VGE---------PGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR--------------GAIYRTTDGG 133 (302)
T ss_dssp EEE---------TTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----------------EEEESSTT
T ss_pred EcC---------CceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC--------------CcEEEeCCCC
Confidence 873 12344444456789998433445544455666676888887643 2233333345
Q ss_pred CceEecccCCcccccceeeee-CCEEEEEeCccCccccccceEEEeeccccceec
Q psy9754 231 KEWKFVTELVVPRHAHSASVL-SSQILIIGGVTTVYKRTLKSVECWCFDRQAWIK 284 (306)
Q Consensus 231 ~~W~~~~~~p~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~ 284 (306)
.+|+.+..-...-. ..+... ++++++++..-. -..-+|+....|+.
T Consensus 134 ~tW~~~~~~~~gs~-~~~~r~~dG~~vavs~~G~-------~~~s~~~G~~~w~~ 180 (302)
T PF14870_consen 134 KTWQAVVSETSGSI-NDITRSSDGRYVAVSSRGN-------FYSSWDPGQTTWQP 180 (302)
T ss_dssp SSEEEEE-S----E-EEEEE-TTS-EEEEETTSS-------EEEEE-TT-SS-EE
T ss_pred CCeeEcccCCccee-EeEEECCCCcEEEEECccc-------EEEEecCCCccceE
Confidence 68998765433322 222333 667666664331 12234555556655
No 100
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.92 E-value=4.3 Score=35.98 Aligned_cols=145 Identities=12% Similarity=0.019 Sum_probs=76.3
Q ss_pred ceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEE
Q psy9754 114 SSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLV 193 (306)
Q Consensus 114 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~ 193 (306)
..++++|..+++-+.+...+.........--+.+|++.....+ ...++.+|+.+...+.+ ........ ...
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~~~~l-t~~~~~~~--~~~ 298 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQLTRL-TNHFGIDT--EPT 298 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC------CceEEEEECCCCCeEEC-ccCCCCcc--ceE
Confidence 6688999998887777654432211111112345655432221 25799999998887776 32211111 122
Q ss_pred EEeCCE-EEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeee-eCC-EEEEEeCccCccccccc
Q psy9754 194 SVNNEK-LYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASV-LSS-QILIIGGVTTVYKRTLK 270 (306)
Q Consensus 194 ~~~~~~-iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~-~~~-~i~v~GG~~~~~~~~~~ 270 (306)
...+++ |++...... ...++.+|..+...+.+..- ......... -++ .|++..+... ..
T Consensus 299 ~spDG~~l~f~sd~~g-----------~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~-----~~ 360 (433)
T PRK04922 299 WAPDGKSIYFTSDRGG-----------RPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGSGG-----QY 360 (433)
T ss_pred ECCCCCEEEEEECCCC-----------CceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECCCC-----ce
Confidence 233444 444322211 14688889888877766421 122222222 244 5555544221 13
Q ss_pred eEEEeeccccceecc
Q psy9754 271 SVECWCFDRQAWIKG 285 (306)
Q Consensus 271 ~~~~yd~~~~~W~~~ 285 (306)
.++++|+.+++.+.+
T Consensus 361 ~I~v~d~~~g~~~~L 375 (433)
T PRK04922 361 RIAVMDLSTGSVRTL 375 (433)
T ss_pred eEEEEECCCCCeEEC
Confidence 788999988877653
No 101
>PRK04043 tolB translocation protein TolB; Provisional
Probab=93.91 E-value=4.2 Score=35.87 Aligned_cols=193 Identities=8% Similarity=-0.014 Sum_probs=102.2
Q ss_pred ceEEEEeCCCCCeeeCCCCCCCccceeeEEECC-EEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEEC
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLD-KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEIN 145 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~ 145 (306)
.++|.+|+.+++=+.+...+..- ......-++ +|.+.-.... ..+++.+|..++.++++...+..-......--+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~-~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG 288 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGML-VVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDD 288 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcE-EeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccCCCccCccEECCCC
Confidence 47888998887766665422111 111122244 5555433222 368999999999998886544321222222234
Q ss_pred CEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeE
Q psy9754 146 DKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDV 225 (306)
Q Consensus 146 ~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~ 225 (306)
.+|++.....+ ...++.+|+.+...+++ ... ..... ...-....|............ .....++.
T Consensus 289 ~~I~F~Sdr~g------~~~Iy~~dl~~g~~~rl-t~~--g~~~~-~~SPDG~~Ia~~~~~~~~~~~-----~~~~~I~v 353 (419)
T PRK04043 289 KRIVFVSDRLG------YPNIFMKKLNSGSVEQV-VFH--GKNNS-SVSTYKNYIVYSSRETNNEFG-----KNTFNLYL 353 (419)
T ss_pred CEEEEEECCCC------CceEEEEECCCCCeEeC-ccC--CCcCc-eECCCCCEEEEEEcCCCcccC-----CCCcEEEE
Confidence 57877654321 35799999999888777 321 11221 222222445444332211100 01257899
Q ss_pred EECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccceec
Q psy9754 226 FVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIK 284 (306)
Q Consensus 226 y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~ 284 (306)
+|++++.++.+.... ....-...-||+.+++-.... ....+++++++.+.=..
T Consensus 354 ~d~~~g~~~~LT~~~--~~~~p~~SPDG~~I~f~~~~~----~~~~L~~~~l~g~~~~~ 406 (419)
T PRK04043 354 ISTNSDYIRRLTANG--VNQFPRFSSDGGSIMFIKYLG----NQSALGIIRLNYNKSFL 406 (419)
T ss_pred EECCCCCeEECCCCC--CcCCeEECCCCCEEEEEEccC----CcEEEEEEecCCCeeEE
Confidence 999999988877532 222222233665444432221 12467888887655444
No 102
>KOG0646|consensus
Probab=93.80 E-value=4.1 Score=35.37 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=22.4
Q ss_pred eCCEEEEEeCccCccccccceEEEeeccccceec
Q psy9754 251 LSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIK 284 (306)
Q Consensus 251 ~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~ 284 (306)
.|+.+++.|+.+ ..+.+||+.+.+-.+
T Consensus 287 ~DgtlLlSGd~d-------g~VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 287 TDGTLLLSGDED-------GKVCVWDIYSKQCIR 313 (476)
T ss_pred cCccEEEeeCCC-------CCEEEEecchHHHHH
Confidence 499999999988 578899998877644
No 103
>KOG0316|consensus
Probab=93.80 E-value=2.7 Score=33.27 Aligned_cols=178 Identities=16% Similarity=0.173 Sum_probs=101.3
Q ss_pred eceEEEEeCCCCCeeeCCCCCCCccceeeEEECC--EEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEE
Q psy9754 66 SNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLD--KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAE 143 (306)
Q Consensus 66 ~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~ 143 (306)
.+.+..+|.+|++-.+. +..-...-.++..++ .+.+-|+.+ .++-.+|..+++.+++..+..++.+.....
T Consensus 80 Dk~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~ePiQildea~D~V~Si~ 152 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFEPIQILDEAKDGVSSID 152 (307)
T ss_pred CceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEecccc-----ceeEEEEcccCCCCccchhhhhcCceeEEE
Confidence 46789999999863211 111111222344443 555556654 568889999999999999888998888888
Q ss_pred ECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCccccccccee
Q psy9754 144 INDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDL 223 (306)
Q Consensus 144 ~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~ 223 (306)
+.++..|.|-.+ ..+..||+...+-..- .+..|-. +.....++.-.++|-.. ..+
T Consensus 153 v~~heIvaGS~D--------GtvRtydiR~G~l~sD--y~g~pit--~vs~s~d~nc~La~~l~-------------stl 207 (307)
T KOG0316|consen 153 VAEHEIVAGSVD--------GTVRTYDIRKGTLSSD--YFGHPIT--SVSFSKDGNCSLASSLD-------------STL 207 (307)
T ss_pred ecccEEEeeccC--------CcEEEEEeecceeehh--hcCCcce--eEEecCCCCEEEEeecc-------------cee
Confidence 888876666433 4577888777654331 2222221 22223345555555433 445
Q ss_pred eEEECCCCceEec-ccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccc
Q psy9754 224 DVFVSNEKEWKFV-TELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 224 ~~y~~~~~~W~~~-~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
...|-++++.-+. .-....-+-.-++..+..-.|++|... ..|+.||+...+
T Consensus 208 rLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSED------G~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 208 RLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSED------GKVYFWDLVDET 260 (307)
T ss_pred eecccchhHHHHHhcccccceeeeeeeecccceeEEeccCC------ceEEEEEeccce
Confidence 6666655542211 100111122345555555666666554 578888886654
No 104
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.63 E-value=5.6 Score=36.31 Aligned_cols=103 Identities=15% Similarity=0.213 Sum_probs=59.5
Q ss_pred ceEEEEeCCCCC--eeeCCCCCCC--------ccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCc--EEecc-CCc
Q psy9754 67 NSVWSFNPNNKQ--WTQEPNMTYP--------RKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT--WEDVA-PLK 133 (306)
Q Consensus 67 ~~~~~~d~~t~~--W~~~~~~~~~--------~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--w~~~~-~~~ 133 (306)
..++.+|..|++ |+.-...+.. .....++..+++||+... ...++.+|..+++ |+.-. ++.
T Consensus 79 g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------dg~l~ALDa~TGk~~W~~~~~~~~ 152 (527)
T TIGR03075 79 SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------DARLVALDAKTGKVVWSKKNGDYK 152 (527)
T ss_pred CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------CCEEEEEECCCCCEEeeccccccc
Confidence 468899988865 8754332211 112234556788887532 2468899998887 76532 222
Q ss_pred cc-ccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCe--eEE
Q psy9754 134 IA-RMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNT--WTT 178 (306)
Q Consensus 134 ~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~ 178 (306)
.. .....-++.+++||+........ ....+..||.++.+ |+.
T Consensus 153 ~~~~~tssP~v~~g~Vivg~~~~~~~---~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 153 AGYTITAAPLVVKGKVITGISGGEFG---VRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred ccccccCCcEEECCEEEEeecccccC---CCcEEEEEECCCCceeEec
Confidence 11 11223345688877753222111 14689999998876 764
No 105
>KOG3545|consensus
Probab=93.37 E-value=3.4 Score=33.03 Aligned_cols=169 Identities=13% Similarity=0.140 Sum_probs=96.2
Q ss_pred ceEEEEeC----CCCCeeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCc---EEeccCCcc-----
Q psy9754 67 NSVWSFNP----NNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT---WEDVAPLKI----- 134 (306)
Q Consensus 67 ~~~~~~d~----~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~---w~~~~~~~~----- 134 (306)
..++-|.. ..+.+...-.+|.+-....-++.++.+|.-.+. ...+.+|++.+.. +..++.+..
T Consensus 42 ~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~~-----t~~ivky~l~~~~~~~~~~lp~a~y~~~~~ 116 (249)
T KOG3545|consen 42 LMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKAG-----TRNIIKYDLETRTVAGSAALPYAGYHNPSP 116 (249)
T ss_pred ceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeeccC-----CcceEEEEeecceeeeeeeccccccCCCcc
Confidence 34444543 334566666677777777788889988887532 3667889988844 455543321
Q ss_pred ----cccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCC----eeEEcccccCCcceeEEEEEEeCCEEEEEcCC
Q psy9754 135 ----ARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTN----TWTTLATKLRYPRYLATLVSVNNEKLYIIGGA 206 (306)
Q Consensus 135 ----~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~----~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~ 206 (306)
+....-.++-++-++++=-..+... .-.+.+.|+.+- +|... . ..+....+++++ |.+|++-..
T Consensus 117 y~~~g~sdiD~avDE~GLWviYat~~~~g---~iv~skLdp~tl~~e~tW~T~---~-~k~~~~~aF~iC-GvLY~v~S~ 188 (249)
T KOG3545|consen 117 YYWGGHSDIDLAVDENGLWVIYATPENAG---TIVLSKLDPETLEVERTWNTT---L-PKRSAGNAFMIC-GVLYVVHSY 188 (249)
T ss_pred cccCCCccccceecccceeEEecccccCC---cEEeeccCHHHhheeeeeccc---c-CCCCcCceEEEe-eeeEEEecc
Confidence 2222334444555676654443332 223477777533 46332 1 223334567788 899999877
Q ss_pred CCCCCCCccccccccee-eEEECCCCceEecccCCccccc--ceeeee---CCEEEEEe
Q psy9754 207 SQTDATNTQKMYSVSDL-DVFVSNEKEWKFVTELVVPRHA--HSASVL---SSQILIIG 259 (306)
Q Consensus 207 ~~~~~~~~~~~~~~~~~-~~y~~~~~~W~~~~~~p~~~~~--~~~~~~---~~~i~v~G 259 (306)
.... ..+ +.||..+++=+ ..++|.+..+ .++... |.++|+..
T Consensus 189 ~~~~----------~~i~yaydt~~~~~~-~~~ipf~N~y~~~~~idYNP~D~~LY~wd 236 (249)
T KOG3545|consen 189 NCTH----------TQISYAYDTTTGTQE-RIDLPFPNPYSYATMIDYNPRDRRLYAWD 236 (249)
T ss_pred ccCC----------ceEEEEEEcCCCcee-cccccccchhhhhhccCCCcccceeeEec
Confidence 6543 223 78998877753 3444554332 233322 67788873
No 106
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.25 E-value=8.4 Score=37.23 Aligned_cols=173 Identities=14% Similarity=0.098 Sum_probs=79.9
Q ss_pred ceEEEEeCCCCCeeeCCCCCCCccceeeEEE--CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEE-
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC--LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAE- 143 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~- 143 (306)
..+..+|..+++-...-... ...-.+++.. ++.+++.|+.+ ..+.+||..+..-. ..+.....-..+..
T Consensus 555 g~v~lWd~~~~~~~~~~~~H-~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~~~~~~~--~~~~~~~~v~~v~~~ 626 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEH-EKRVWSIDYSSADPTLLASGSDD-----GSVKLWSINQGVSI--GTIKTKANICCVQFP 626 (793)
T ss_pred CeEEEEECCCCeEEEEecCC-CCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEECCCCcEE--EEEecCCCeEEEEEe
Confidence 45677787765432111111 1112233332 45677777754 45777888765421 11111111111111
Q ss_pred -ECCEEEEEcccCCCCCCCCCccEEEEeCCCCe--eEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCccccccc
Q psy9754 144 -INDKIWIAGGYTGDKMNPVTDKVECYDPRTNT--WTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSV 220 (306)
Q Consensus 144 -~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~ 220 (306)
.++.++++|+.+ +.+..||+.+.. ...+ ...... ...+.+.++..++.++..
T Consensus 627 ~~~g~~latgs~d--------g~I~iwD~~~~~~~~~~~-~~h~~~---V~~v~f~~~~~lvs~s~D------------- 681 (793)
T PLN00181 627 SESGRSLAFGSAD--------HKVYYYDLRNPKLPLCTM-IGHSKT---VSYVRFVDSSTLVSSSTD------------- 681 (793)
T ss_pred CCCCCEEEEEeCC--------CeEEEEECCCCCccceEe-cCCCCC---EEEEEEeCCCEEEEEECC-------------
Confidence 245666666533 568889987543 2222 111111 112222235556666543
Q ss_pred ceeeEEECCCC----ceEecccCCccccc--ceeeeeCCEEEEEeCccCccccccceEEEeeccc
Q psy9754 221 SDLDVFVSNEK----EWKFVTELVVPRHA--HSASVLSSQILIIGGVTTVYKRTLKSVECWCFDR 279 (306)
Q Consensus 221 ~~~~~y~~~~~----~W~~~~~~p~~~~~--~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~ 279 (306)
..+.+||+... .|..+..+...... ......++.+++.|+.+ ..+.+|+...
T Consensus 682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D-------~~v~iw~~~~ 739 (793)
T PLN00181 682 NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET-------NEVFVYHKAF 739 (793)
T ss_pred CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC-------CEEEEEECCC
Confidence 45677877532 23333222211111 11112256777777766 5677887653
No 107
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.14 E-value=5.8 Score=35.07 Aligned_cols=145 Identities=9% Similarity=-0.038 Sum_probs=76.7
Q ss_pred ceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEE
Q psy9754 114 SSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLV 193 (306)
Q Consensus 114 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~ 193 (306)
..++++|+.+++-+++...+.........--+++|++.....+ ...++.+|+++...+.+ ......-. ...
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~l-t~~~~~~~--~~~ 293 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQLSRV-TNHPAIDT--EPF 293 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC------CceEEEEECCCCCeEEc-ccCCCCcC--CeE
Confidence 5789999999887776544321111111112345554432111 25789999999988877 33221111 112
Q ss_pred EEeC-CEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceee-eeCC-EEEEEeCccCccccccc
Q psy9754 194 SVNN-EKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSAS-VLSS-QILIIGGVTTVYKRTLK 270 (306)
Q Consensus 194 ~~~~-~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~-~~~~-~i~v~GG~~~~~~~~~~ 270 (306)
...+ .+|++...... ...++.+|+.+.+++.+... ........ .-++ .|++...... ..
T Consensus 294 ~spDg~~i~f~s~~~g-----------~~~iy~~d~~~g~~~~lt~~--~~~~~~~~~Spdg~~i~~~~~~~~-----~~ 355 (430)
T PRK00178 294 WGKDGRTLYFTSDRGG-----------KPQIYKVNVNGGRAERVTFV--GNYNARPRLSADGKTLVMVHRQDG-----NF 355 (430)
T ss_pred ECCCCCEEEEEECCCC-----------CceEEEEECCCCCEEEeecC--CCCccceEECCCCCEEEEEEccCC-----ce
Confidence 2223 45655432211 14688999988887766421 11112222 2244 5555543221 13
Q ss_pred eEEEeeccccceecc
Q psy9754 271 SVECWCFDRQAWIKG 285 (306)
Q Consensus 271 ~~~~yd~~~~~W~~~ 285 (306)
.++++|+++++.+.+
T Consensus 356 ~l~~~dl~tg~~~~l 370 (430)
T PRK00178 356 HVAAQDLQRGSVRIL 370 (430)
T ss_pred EEEEEECCCCCEEEc
Confidence 688999988777653
No 108
>KOG0291|consensus
Probab=93.05 E-value=7.6 Score=36.16 Aligned_cols=147 Identities=11% Similarity=0.099 Sum_probs=78.4
Q ss_pred CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEE--ECCEEEEEcccCCCCCCCCCccEEEEeCCCCe
Q psy9754 98 LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAE--INDKIWIAGGYTGDKMNPVTDKVECYDPRTNT 175 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~ 175 (306)
++.+.+.|+.++ .+-+||..++..- ..+....+++++.. ..++..+.... -+.+..+|.+...
T Consensus 361 Dgq~iaTG~eDg-----KVKvWn~~SgfC~--vTFteHts~Vt~v~f~~~g~~llssSL--------DGtVRAwDlkRYr 425 (893)
T KOG0291|consen 361 DGQLIATGAEDG-----KVKVWNTQSGFCF--VTFTEHTSGVTAVQFTARGNVLLSSSL--------DGTVRAWDLKRYR 425 (893)
T ss_pred CCcEEEeccCCC-----cEEEEeccCceEE--EEeccCCCceEEEEEEecCCEEEEeec--------CCeEEeeeecccc
Confidence 677888877654 3555665554321 11112222222222 24444443322 2467788877665
Q ss_pred eEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeCCEE
Q psy9754 176 WTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQI 255 (306)
Q Consensus 176 W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i 255 (306)
--+. -..|.|.-..+.++...|.|++.|+.+ .-++++++..+++-..+-.=..+....-+....+.+
T Consensus 426 NfRT-ft~P~p~QfscvavD~sGelV~AG~~d------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~ 492 (893)
T KOG0291|consen 426 NFRT-FTSPEPIQFSCVAVDPSGELVCAGAQD------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSL 492 (893)
T ss_pred eeee-ecCCCceeeeEEEEcCCCCEEEeeccc------------eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCe
Confidence 3333 244556555555555568898888764 267888888888765443222222222222335566
Q ss_pred EEEeCccCccccccceEEEeeccc
Q psy9754 256 LIIGGVTTVYKRTLKSVECWCFDR 279 (306)
Q Consensus 256 ~v~GG~~~~~~~~~~~~~~yd~~~ 279 (306)
++-|..+ ++|-+||.-.
T Consensus 493 LaS~SWD-------kTVRiW~if~ 509 (893)
T KOG0291|consen 493 LASGSWD-------KTVRIWDIFS 509 (893)
T ss_pred EEecccc-------ceEEEEEeec
Confidence 6666555 5677777643
No 109
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.01 E-value=5.9 Score=34.76 Aligned_cols=144 Identities=11% Similarity=-0.048 Sum_probs=76.3
Q ss_pred ceeEEEeCCCCcEEeccCCcccccceeeEEEC-CEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEE
Q psy9754 114 SSVECYDPVAHTWEDVAPLKIARMGMAVAEIN-DKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATL 192 (306)
Q Consensus 114 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~ 192 (306)
..++++|..+++.+.+........... ..-+ +.|++.....+ ...++.+|+.+...+.+ ......... .
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~-~spDg~~l~~~~~~~~------~~~i~~~d~~~~~~~~l-~~~~~~~~~--~ 283 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPA-FSPDGSKLAVSLSKDG------NPDIYVMDLDGKQLTRL-TNGPGIDTE--P 283 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceE-ECCCCCEEEEEECCCC------CccEEEEECCCCCEEEC-CCCCCCCCC--E
Confidence 678899999887666654432222222 2224 45665533221 25789999998887777 322211111 1
Q ss_pred EEEeCC-EEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeee-eCCEEEEEeCccCccccccc
Q psy9754 193 VSVNNE-KLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASV-LSSQILIIGGVTTVYKRTLK 270 (306)
Q Consensus 193 ~~~~~~-~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~-~~~~i~v~GG~~~~~~~~~~ 270 (306)
....++ +|++...... ...++.+|..+..++.+..- ......... -+++.+++..... ...
T Consensus 284 ~~s~dg~~l~~~s~~~g-----------~~~iy~~d~~~~~~~~l~~~--~~~~~~~~~spdg~~i~~~~~~~----~~~ 346 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGG-----------SPQIYMMDADGGEVRRLTFR--GGYNASPSWSPDGDLIAFVHREG----GGF 346 (417)
T ss_pred EECCCCCEEEEEECCCC-----------CceEEEEECCCCCEEEeecC--CCCccCeEECCCCCEEEEEEccC----Cce
Confidence 112234 4544432211 14688899888877665422 111222222 2565555544332 124
Q ss_pred eEEEeeccccceec
Q psy9754 271 SVECWCFDRQAWIK 284 (306)
Q Consensus 271 ~~~~yd~~~~~W~~ 284 (306)
.++++|+.++.++.
T Consensus 347 ~i~~~d~~~~~~~~ 360 (417)
T TIGR02800 347 NIAVMDLDGGGERV 360 (417)
T ss_pred EEEEEeCCCCCeEE
Confidence 78999998876655
No 110
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.69 E-value=6.8 Score=34.70 Aligned_cols=185 Identities=6% Similarity=-0.074 Sum_probs=94.7
Q ss_pred eceEEEEeCCCCCeeeCCCCCCCccceeeEEE-CC-EEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEE
Q psy9754 66 SNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC-LD-KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAE 143 (306)
Q Consensus 66 ~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~ 143 (306)
...++.+|..+++-+.+...+..- ...... ++ +|++...... ...++++|..+++.+++.............-
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~~--~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP 296 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRHN--GAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSNNTEPTWFP 296 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCCc--CCeEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCCCCCcCceEECC
Confidence 357889999888766665543221 122222 44 5555433222 2468999999988777654322211111111
Q ss_pred ECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCE-EEEEcCCCCCCCCCcccccccce
Q psy9754 144 INDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEK-LYIIGGASQTDATNTQKMYSVSD 222 (306)
Q Consensus 144 ~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-iyi~GG~~~~~~~~~~~~~~~~~ 222 (306)
-+.+|++.....+ ...++.+|+.+..-+.+ ..... .. .......+++ |++.+.... ...
T Consensus 297 DG~~I~f~s~~~g------~~~Iy~~d~~~g~~~~l-t~~~~-~~-~~~~~SpDG~~Ia~~~~~~g-----------~~~ 356 (429)
T PRK03629 297 DSQNLAYTSDQAG------RPQVYKVNINGGAPQRI-TWEGS-QN-QDADVSSDGKFMVMVSSNGG-----------QQH 356 (429)
T ss_pred CCCEEEEEeCCCC------CceEEEEECCCCCeEEe-ecCCC-Cc-cCEEECCCCCEEEEEEccCC-----------Cce
Confidence 2334554432211 24788889888776666 22111 11 1122223344 444433221 146
Q ss_pred eeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccc
Q psy9754 223 LDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 223 ~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
++.+|++++.++.+.... ........-|++.+++.+.... ...+++.+.+...
T Consensus 357 I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~----~~~l~~~~~~G~~ 409 (429)
T PRK03629 357 IAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGM----GSVLNLVSTDGRF 409 (429)
T ss_pred EEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCC----ceEEEEEECCCCC
Confidence 888999998888776421 1111222247777766655431 1356666765433
No 111
>PRK13684 Ycf48-like protein; Provisional
Probab=92.49 E-value=6.1 Score=33.67 Aligned_cols=171 Identities=11% Similarity=0.194 Sum_probs=81.3
Q ss_pred CCCeeeCCCCCCCccceeeEEEC-CEEEEEccCCCCCCCceeEEEeCCCCcEEeccC-Cccccc-ceeeEEECCEEEEEc
Q psy9754 76 NKQWTQEPNMTYPRKIFSFVSCL-DKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAP-LKIARM-GMAVAEINDKIWIAG 152 (306)
Q Consensus 76 t~~W~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~-~~~~~~-~~~~~~~~~~iyv~G 152 (306)
...|+... +|.......++..+ +..|++|-. ..+++=+-.-.+|++... ++.... ...+...++..|+.|
T Consensus 34 ~~~W~~~~-~~~~~~l~~v~F~d~~~g~avG~~------G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G 106 (334)
T PRK13684 34 SSPWQVID-LPTEANLLDIAFTDPNHGWLVGSN------RTLLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVG 106 (334)
T ss_pred CCCcEEEe-cCCCCceEEEEEeCCCcEEEEECC------CEEEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeC
Confidence 45697775 34444445555554 566777642 223322234568998643 322211 222333355566665
Q ss_pred ccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCc
Q psy9754 153 GYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKE 232 (306)
Q Consensus 153 G~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~ 232 (306)
. ...+++-+-.-.+|+++......+........+.++.+++.|.. ..+++=+=.-.+
T Consensus 107 ~---------~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~--------------G~i~~S~DgG~t 163 (334)
T PRK13684 107 Q---------PSLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV--------------GAIYRTTDGGKN 163 (334)
T ss_pred C---------CceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc--------------ceEEEECCCCCC
Confidence 2 13344433344589998322122222223444554667766543 223333334568
Q ss_pred eEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEE-eeccccceec
Q psy9754 233 WKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVEC-WCFDRQAWIK 284 (306)
Q Consensus 233 W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~-yd~~~~~W~~ 284 (306)
|+.+...... ..+.+....+..+++.|... .++. .|....+|+.
T Consensus 164 W~~~~~~~~g-~~~~i~~~~~g~~v~~g~~G-------~i~~s~~~gg~tW~~ 208 (334)
T PRK13684 164 WEALVEDAAG-VVRNLRRSPDGKYVAVSSRG-------NFYSTWEPGQTAWTP 208 (334)
T ss_pred ceeCcCCCcc-eEEEEEECCCCeEEEEeCCc-------eEEEEcCCCCCeEEE
Confidence 9988754432 33344444344444433332 2222 2344457877
No 112
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=92.07 E-value=3.3 Score=29.63 Aligned_cols=81 Identities=7% Similarity=0.037 Sum_probs=54.9
Q ss_pred EECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCC---cccccceeeEEECCEEEEEcccCCCCCCCCCccEEEE-eC
Q psy9754 96 SCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPL---KIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECY-DP 171 (306)
Q Consensus 96 ~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~---~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~-d~ 171 (306)
.++|-+|-..-. .......+..||..+.+|+.++.. .........+.++|+|-++.-...... ..-.+++. |.
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~--~~~~iWvLeD~ 79 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEP--DSIDIWVLEDY 79 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCc--ceEEEEEeecc
Confidence 357878777665 223457788999999999887542 345566677888999988765443321 13467777 46
Q ss_pred CCCeeEEc
Q psy9754 172 RTNTWTTL 179 (306)
Q Consensus 172 ~~~~W~~~ 179 (306)
++.+|++.
T Consensus 80 ~k~~Wsk~ 87 (129)
T PF08268_consen 80 EKQEWSKK 87 (129)
T ss_pred ccceEEEE
Confidence 67789876
No 113
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.96 E-value=9.2 Score=34.55 Aligned_cols=106 Identities=13% Similarity=0.193 Sum_probs=56.9
Q ss_pred ceEEEEeCCCCC--eeeCCCCC----CCc-cceeeEEEC-CEEEEEccCCCCCCCceeEEEeCCCCc--EEeccCCcc--
Q psy9754 67 NSVWSFNPNNKQ--WTQEPNMT----YPR-KIFSFVSCL-DKIYAIGGQDCKTLLSSVECYDPVAHT--WEDVAPLKI-- 134 (306)
Q Consensus 67 ~~~~~~d~~t~~--W~~~~~~~----~~~-~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~d~~~~~--w~~~~~~~~-- 134 (306)
..++.+|..+++ |+.-...+ .+. ....++..+ ++||+... ...++.+|..+++ |+.-.....
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~g~v~AlD~~TG~~~W~~~~~~~~~~ 144 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------DGRLVALDAETGKQVWKFGNNDQVPP 144 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------CCeEEEEECCCCCEeeeecCCCCcCc
Confidence 568889988765 87543222 111 111233445 78887643 2568889998776 775432221
Q ss_pred -cccceeeEEECCEEEEEcccCCCC-CCCCCccEEEEeCCCCe--eEEc
Q psy9754 135 -ARMGMAVAEINDKIWIAGGYTGDK-MNPVTDKVECYDPRTNT--WTTL 179 (306)
Q Consensus 135 -~~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~~~d~~~~~--W~~~ 179 (306)
.......++.++.+|+ |...... .......++.+|.++.+ |+.-
T Consensus 145 ~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 145 GYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred ceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEee
Confidence 0112233455676665 3221111 00114678999998765 8653
No 114
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=91.87 E-value=15 Score=36.78 Aligned_cols=151 Identities=7% Similarity=0.059 Sum_probs=83.1
Q ss_pred CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCC----------c--cc-ccceeeEEE--CCEEEEEcccCCCCCCCC
Q psy9754 98 LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPL----------K--IA-RMGMAVAEI--NDKIWIAGGYTGDKMNPV 162 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~----------~--~~-~~~~~~~~~--~~~iyv~GG~~~~~~~~~ 162 (306)
++.|||.... ...++++|+.++.......- . .. ..-.++++. ++.|||....
T Consensus 694 ~g~LyVad~~-----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-------- 760 (1057)
T PLN02919 694 NEKVYIAMAG-----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-------- 760 (1057)
T ss_pred CCeEEEEECC-----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--------
Confidence 5788888542 25588888877765432110 0 00 111123332 3468887532
Q ss_pred CccEEEEeCCCCeeEEccc-cc--C--C--------------cceeEEEEEEeCCEEEEEcCCCCCCCCCccccccccee
Q psy9754 163 TDKVECYDPRTNTWTTLAT-KL--R--Y--------------PRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDL 223 (306)
Q Consensus 163 ~~~~~~~d~~~~~W~~~~~-~~--~--~--------------~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~ 223 (306)
.+.+.++|+++.....+.. .. + . -..-.+++...++.||+....+ ..+
T Consensus 761 n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-------------~rI 827 (1057)
T PLN02919 761 SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-------------HKI 827 (1057)
T ss_pred CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-------------CEE
Confidence 3678999988765332210 00 0 0 0011233444457899987553 678
Q ss_pred eEEECCCCceEecccCCc-----------cc-ccceeeee-CCEEEEEeCccCccccccceEEEeeccccc
Q psy9754 224 DVFVSNEKEWKFVTELVV-----------PR-HAHSASVL-SSQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 224 ~~y~~~~~~W~~~~~~p~-----------~~-~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
.++|+++.....+..... .. .-.+++.- ++++||....+ +.+.++|+++++
T Consensus 828 rviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-------n~Irvid~~~~~ 891 (1057)
T PLN02919 828 KKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-------SLIRYLDLNKGE 891 (1057)
T ss_pred EEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-------CEEEEEECCCCc
Confidence 999998877665442110 01 11233332 78899987666 578899988765
No 115
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=91.78 E-value=7.3 Score=32.97 Aligned_cols=71 Identities=8% Similarity=0.057 Sum_probs=34.5
Q ss_pred ceeeEEEC--CCCceEecccCCcccccceeeee-CC-EEEEEeCccCccccccceEEEeec--cccceeccCCCCccccc
Q psy9754 221 SDLDVFVS--NEKEWKFVTELVVPRHAHSASVL-SS-QILIIGGVTTVYKRTLKSVECWCF--DRQAWIKGVSGLPATIL 294 (306)
Q Consensus 221 ~~~~~y~~--~~~~W~~~~~~p~~~~~~~~~~~-~~-~i~v~GG~~~~~~~~~~~~~~yd~--~~~~W~~~~~~~p~~r~ 294 (306)
..+.+|++ +...++.+...+....-..+..- ++ .||+.+..+ +.+.+|+. +++.++. +...+.+..
T Consensus 250 ~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~-------~~v~v~~~~~~~g~l~~-~~~~~~g~~ 321 (330)
T PRK11028 250 SLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS-------HHISVYEIDGETGLLTE-LGRYAVGQG 321 (330)
T ss_pred CeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC-------CcEEEEEEcCCCCcEEE-ccccccCCC
Confidence 34555555 44455555544332111223332 44 666655333 45667654 5667766 455555444
Q ss_pred ceeeE
Q psy9754 295 GHSSV 299 (306)
Q Consensus 295 ~~~~~ 299 (306)
-.+..
T Consensus 322 P~~~~ 326 (330)
T PRK11028 322 PMWVS 326 (330)
T ss_pred ceEEE
Confidence 33333
No 116
>KOG2321|consensus
Probab=91.74 E-value=5.4 Score=35.86 Aligned_cols=97 Identities=14% Similarity=0.112 Sum_probs=51.9
Q ss_pred CccEEEEeCCCCeeEEcccccCCcceeEEEEEEe-CCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceE-------
Q psy9754 163 TDKVECYDPRTNTWTTLATKLRYPRYLATLVSVN-NEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWK------- 234 (306)
Q Consensus 163 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~------- 234 (306)
...++++|++.+.|-.. -....+... ++.++ -..|+.+|+.. ..++.+|+...+--
T Consensus 154 g~evYRlNLEqGrfL~P-~~~~~~~lN--~v~in~~hgLla~Gt~~-------------g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNP-FETDSGELN--VVSINEEHGLLACGTED-------------GVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred CcceEEEEccccccccc-cccccccce--eeeecCccceEEecccC-------------ceEEEecchhhhhheeeeccc
Confidence 46899999999998554 222222221 22222 24677888765 45777777644311
Q ss_pred ecccCCcccccceeee--e-CCEEEEEeCccCccccccceEEEeeccccc
Q psy9754 235 FVTELVVPRHAHSASV--L-SSQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 235 ~~~~~p~~~~~~~~~~--~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
.+...|..-...+... + ++.|-+.-|... ..+++||+.+.+
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~------G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTST------GSVLIYDLRASK 261 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccC------CcEEEEEcccCC
Confidence 1223333322333332 2 545555444433 568888887644
No 117
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.64 E-value=8.9 Score=33.69 Aligned_cols=193 Identities=12% Similarity=0.052 Sum_probs=98.9
Q ss_pred eceEEEEeCCCCCee--eCCCCCCCcc-ceeeEEE-CCE-EEEEccCCCCCCCceeEEEeCCCC-----cEEeccCCccc
Q psy9754 66 SNSVWSFNPNNKQWT--QEPNMTYPRK-IFSFVSC-LDK-IYAIGGQDCKTLLSSVECYDPVAH-----TWEDVAPLKIA 135 (306)
Q Consensus 66 ~~~~~~~d~~t~~W~--~~~~~~~~~~-~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~d~~~~-----~w~~~~~~~~~ 135 (306)
...+++....+..-+ .+-..+.... ...+... +++ |++.-.... . .+.++..+.... .|+.+.+-. .
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~-~-~s~v~~~d~~~~~~~~~~~~~l~~~~-~ 277 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT-S-ESEVYLLDLDDGGSPDAKPKLLSPRE-D 277 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS-S-EEEEEEEECCCTTTSS-SEEEEEESS-S
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc-c-CCeEEEEeccccCCCcCCcEEEeCCC-C
Confidence 567888888877654 2322233332 2233223 444 333333222 2 478899999875 677775422 2
Q ss_pred ccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCe---eEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCC
Q psy9754 136 RMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNT---WTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDAT 212 (306)
Q Consensus 136 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~---W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~ 212 (306)
-....+...++.+|+....... ...+...++.+.. |..+-.+......-..+...+ ++|++.--.+.
T Consensus 278 ~~~~~v~~~~~~~yi~Tn~~a~-----~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~Lvl~~~~~~---- 347 (414)
T PF02897_consen 278 GVEYYVDHHGDRLYILTNDDAP-----NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK-DYLVLSYRENG---- 347 (414)
T ss_dssp S-EEEEEEETTEEEEEE-TT-T-----T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET-TEEEEEEEETT----
T ss_pred ceEEEEEccCCEEEEeeCCCCC-----CcEEEEecccccccccceeEEcCCCCceeEEEEEEEC-CEEEEEEEECC----
Confidence 2223344458899998763332 3678889888775 664313222222333344444 88877643321
Q ss_pred CcccccccceeeEEECCCCceEec-ccCCcccccceeee-e-CCEEEE-EeCccCccccccceEEEeeccccceec
Q psy9754 213 NTQKMYSVSDLDVFVSNEKEWKFV-TELVVPRHAHSASV-L-SSQILI-IGGVTTVYKRTLKSVECWCFDRQAWIK 284 (306)
Q Consensus 213 ~~~~~~~~~~~~~y~~~~~~W~~~-~~~p~~~~~~~~~~-~-~~~i~v-~GG~~~~~~~~~~~~~~yd~~~~~W~~ 284 (306)
...+.++++. ..|... .++|..-...+... . .+.+++ +.+...+ ..++.||+++++-+.
T Consensus 348 -------~~~l~v~~~~-~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P-----~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 348 -------SSRLRVYDLD-DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTP-----PTVYRYDLATGELTL 410 (414)
T ss_dssp -------EEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEE-----EEEEEEETTTTCEEE
T ss_pred -------ccEEEEEECC-CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCC-----CEEEEEECCCCCEEE
Confidence 3678999987 233322 22332211111111 1 334444 4555443 689999999988655
No 118
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.63 E-value=8.7 Score=33.60 Aligned_cols=133 Identities=10% Similarity=0.097 Sum_probs=67.5
Q ss_pred CCEEEEEccCCCCCCCceeEE-EeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCC--
Q psy9754 98 LDKIYAIGGQDCKTLLSSVEC-YDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTN-- 174 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~-~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~-- 174 (306)
++.++++|-.. .+++ .|.....|+.+......+........++.++++|.. ..+..-+..-.
T Consensus 249 dG~~~~vg~~G------~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~---------G~l~~S~d~G~~~ 313 (398)
T PLN00033 249 DGDYVAVSSRG------NFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG---------GGLYVSKGTGLTE 313 (398)
T ss_pred CCCEEEEECCc------cEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC---------ceEEEecCCCCcc
Confidence 44566665422 2333 333334488886544444333334467888888742 23333333333
Q ss_pred ---eeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEeccc-CCcccccceeee
Q psy9754 175 ---TWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTE-LVVPRHAHSASV 250 (306)
Q Consensus 175 ---~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~-~p~~~~~~~~~~ 250 (306)
+|+++ ........-..+....++.++++|... .+.+-.-.-.+|+.... -+.+-....+..
T Consensus 314 ~~~~f~~~-~~~~~~~~l~~v~~~~d~~~~a~G~~G--------------~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f 378 (398)
T PLN00033 314 EDFDFEEA-DIKSRGFGILDVGYRSKKEAWAAGGSG--------------ILLRSTDGGKSWKRDKGADNIAANLYSVKF 378 (398)
T ss_pred cccceeec-ccCCCCcceEEEEEcCCCcEEEEECCC--------------cEEEeCCCCcceeEccccCCCCcceeEEEE
Confidence 45555 221122222344455568899988652 23444445678998752 222222334443
Q ss_pred e-CCEEEEEeC
Q psy9754 251 L-SSQILIIGG 260 (306)
Q Consensus 251 ~-~~~i~v~GG 260 (306)
. +++.|+.|-
T Consensus 379 ~~~~~g~~~G~ 389 (398)
T PLN00033 379 FDDKKGFVLGN 389 (398)
T ss_pred cCCCceEEEeC
Confidence 4 578888874
No 119
>PRK03629 tolB translocation protein TolB; Provisional
Probab=91.52 E-value=9.5 Score=33.81 Aligned_cols=147 Identities=9% Similarity=-0.058 Sum_probs=75.8
Q ss_pred ceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEE
Q psy9754 114 SSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLV 193 (306)
Q Consensus 114 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~ 193 (306)
..++++|..+++-+.+...+.........--+.+|++.....+ ...++.+|+++...+.+ ......- ....
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~~~~l-t~~~~~~--~~~~ 293 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQIRQV-TDGRSNN--TEPT 293 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCCEEEc-cCCCCCc--CceE
Confidence 5688899988877776654432222121112345665533221 24689999998888777 3322111 1222
Q ss_pred EEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeCCE-EEEEeCccCccccccceE
Q psy9754 194 SVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQ-ILIIGGVTTVYKRTLKSV 272 (306)
Q Consensus 194 ~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~-i~v~GG~~~~~~~~~~~~ 272 (306)
...+++.+++...... ...++.+|+++..-+.+.... .........-+++ |++.+.... ...+
T Consensus 294 wSPDG~~I~f~s~~~g----------~~~Iy~~d~~~g~~~~lt~~~-~~~~~~~~SpDG~~Ia~~~~~~g-----~~~I 357 (429)
T PRK03629 294 WFPDSQNLAYTSDQAG----------RPQVYKVNINGGAPQRITWEG-SQNQDADVSSDGKFMVMVSSNGG-----QQHI 357 (429)
T ss_pred ECCCCCEEEEEeCCCC----------CceEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEEccCC-----CceE
Confidence 2334543333322111 146788888877665553211 1111112223554 444443222 1468
Q ss_pred EEeeccccceecc
Q psy9754 273 ECWCFDRQAWIKG 285 (306)
Q Consensus 273 ~~yd~~~~~W~~~ 285 (306)
+++|+++++++.+
T Consensus 358 ~~~dl~~g~~~~L 370 (429)
T PRK03629 358 AKQDLATGGVQVL 370 (429)
T ss_pred EEEECCCCCeEEe
Confidence 8999998888764
No 120
>PRK04043 tolB translocation protein TolB; Provisional
Probab=91.17 E-value=10 Score=33.51 Aligned_cols=148 Identities=11% Similarity=0.009 Sum_probs=82.6
Q ss_pred ceeEEEeCCCCcEEeccCCcccccceeeEEEC-CEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEE
Q psy9754 114 SSVECYDPVAHTWEDVAPLKIARMGMAVAEIN-DKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATL 192 (306)
Q Consensus 114 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~ 192 (306)
.+++++|+.+++-+.+...+....... ..-+ .+|.+.-...+ ...++.+|..+..++++ ...+.. ....
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~-~SPDG~~la~~~~~~g------~~~Iy~~dl~~g~~~~L-T~~~~~--d~~p 282 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSD-VSKDGSKLLLTMAPKG------QPDIYLYDTNTKTLTQI-TNYPGI--DVNG 282 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeE-ECCCCCEEEEEEccCC------CcEEEEEECCCCcEEEc-ccCCCc--cCcc
Confidence 589999999988777765332221122 2224 45655443221 36899999999988888 433321 1112
Q ss_pred EEEeC-CEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeCCE-EEEEeCccCccc-ccc
Q psy9754 193 VSVNN-EKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQ-ILIIGGVTTVYK-RTL 269 (306)
Q Consensus 193 ~~~~~-~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~-i~v~GG~~~~~~-~~~ 269 (306)
....+ .+|++...... ...++++|+++++.+.+..- .... ....-+++ |.+......... ...
T Consensus 283 ~~SPDG~~I~F~Sdr~g-----------~~~Iy~~dl~~g~~~rlt~~--g~~~-~~~SPDG~~Ia~~~~~~~~~~~~~~ 348 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLG-----------YPNIFMKKLNSGSVEQVVFH--GKNN-SSVSTYKNYIVYSSRETNNEFGKNT 348 (419)
T ss_pred EECCCCCEEEEEECCCC-----------CceEEEEECCCCCeEeCccC--CCcC-ceECCCCCEEEEEEcCCCcccCCCC
Confidence 22223 46766643321 15789999998888766532 1111 22223554 444443221110 123
Q ss_pred ceEEEeeccccceecc
Q psy9754 270 KSVECWCFDRQAWIKG 285 (306)
Q Consensus 270 ~~~~~yd~~~~~W~~~ 285 (306)
.+++++|++++.++.+
T Consensus 349 ~~I~v~d~~~g~~~~L 364 (419)
T PRK04043 349 FNLYLISTNSDYIRRL 364 (419)
T ss_pred cEEEEEECCCCCeEEC
Confidence 5899999999998774
No 121
>PRK02889 tolB translocation protein TolB; Provisional
Probab=90.87 E-value=11 Score=33.37 Aligned_cols=143 Identities=10% Similarity=-0.008 Sum_probs=71.6
Q ss_pred ceeEEEeCCCCcEEeccCCcccccceeeEEEC-CEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEE
Q psy9754 114 SSVECYDPVAHTWEDVAPLKIARMGMAVAEIN-DKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATL 192 (306)
Q Consensus 114 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~ 192 (306)
..++++|..+++-+.+...+.... .....-+ .+|++.....+ ...++.+|......+.+ ........ ..
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~l-t~~~~~~~--~~ 289 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDG------NSQIYTVNADGSGLRRL-TQSSGIDT--EP 289 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCC------CceEEEEECCCCCcEEC-CCCCCCCc--Ce
Confidence 568999998887666654432211 1222223 45655433221 35788999887776666 32211111 12
Q ss_pred EEEeCCE-EEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeee-eCCE-EEEEeCccCcccccc
Q psy9754 193 VSVNNEK-LYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASV-LSSQ-ILIIGGVTTVYKRTL 269 (306)
Q Consensus 193 ~~~~~~~-iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~-~~~~-i~v~GG~~~~~~~~~ 269 (306)
....+++ |++..... . ...++.++..+...+.+.. . ......... -+++ |++...... .
T Consensus 290 ~wSpDG~~l~f~s~~~-g----------~~~Iy~~~~~~g~~~~lt~-~-g~~~~~~~~SpDG~~Ia~~s~~~g-----~ 351 (427)
T PRK02889 290 FFSPDGRSIYFTSDRG-G----------APQIYRMPASGGAAQRVTF-T-GSYNTSPRISPDGKLLAYISRVGG-----A 351 (427)
T ss_pred EEcCCCCEEEEEecCC-C----------CcEEEEEECCCCceEEEec-C-CCCcCceEECCCCCEEEEEEccCC-----c
Confidence 2233454 54432211 1 1467888877776665542 1 111112222 2554 444433221 1
Q ss_pred ceEEEeeccccceec
Q psy9754 270 KSVECWCFDRQAWIK 284 (306)
Q Consensus 270 ~~~~~yd~~~~~W~~ 284 (306)
..++++|+.+++...
T Consensus 352 ~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 352 FKLYVQDLATGQVTA 366 (427)
T ss_pred EEEEEEECCCCCeEE
Confidence 368888988777655
No 122
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=90.58 E-value=12 Score=33.11 Aligned_cols=167 Identities=11% Similarity=0.042 Sum_probs=84.1
Q ss_pred CceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCC--ccEEEEeCCCCeeEEcccccCCcceeE
Q psy9754 113 LSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVT--DKVECYDPRTNTWTTLATKLRYPRYLA 190 (306)
Q Consensus 113 ~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~--~~~~~~d~~~~~W~~~~~~~~~~~~~~ 190 (306)
..+++.++.+.++-+++.-+...-...+.-.-++.|.|....- .|+. ..+++.+........+ +..-+
T Consensus 106 taDly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~----tPF~q~~~lYkv~~dg~~~e~L------nlGpa 175 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFH----TPFSQWTELYKVNVDGIKTEPL------NLGPA 175 (668)
T ss_pred cccEEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccC----CCcccceeeeEEccCCceeeec------cCCce
Confidence 4678888888888777765532222222333467777764322 2233 2333333333334443 22223
Q ss_pred EEEEEeCCEEEEEcCCCCCCCCC--cccccccceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccc--
Q psy9754 191 TLVSVNNEKLYIIGGASQTDATN--TQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYK-- 266 (306)
Q Consensus 191 ~~~~~~~~~iyi~GG~~~~~~~~--~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~-- 266 (306)
+..+..++.+++ |- +..+... .-.-..-..+|+=.-...+++++-.|+..- .+.++++++||.+..+.+-.+
T Consensus 176 thiv~~dg~ivi-gR-ntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~v--S~PmIV~~RvYFlsD~eG~GnlY 251 (668)
T COG4946 176 THIVIKDGIIVI-GR-NTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNV--SSPMIVGERVYFLSDHEGVGNLY 251 (668)
T ss_pred eeEEEeCCEEEE-cc-CcccCcccccccCCccceEEEEecCCcceeeeeecCCCc--CCceEEcceEEEEecccCccceE
Confidence 455666575544 32 2111110 000001134565554445677766664432 234455777777754332110
Q ss_pred --------------------------------cccceEEEeeccccceeccCCCCcccc
Q psy9754 267 --------------------------------RTLKSVECWCFDRQAWIKGVSGLPATI 293 (306)
Q Consensus 267 --------------------------------~~~~~~~~yd~~~~~W~~~~~~~p~~r 293 (306)
+.-.++|.|||++..-+.+--.||..|
T Consensus 252 SvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~r 310 (668)
T COG4946 252 SVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDR 310 (668)
T ss_pred EeccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCcccc
Confidence 123579999999998877644555554
No 123
>KOG0266|consensus
Probab=90.34 E-value=13 Score=33.30 Aligned_cols=179 Identities=11% Similarity=0.101 Sum_probs=88.1
Q ss_pred ceEEEEeCCCC-Ce-eeCCCCCCCccceeeEEE-CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEE
Q psy9754 67 NSVWSFNPNNK-QW-TQEPNMTYPRKIFSFVSC-LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAE 143 (306)
Q Consensus 67 ~~~~~~d~~t~-~W-~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~ 143 (306)
..+..+|.+.+ +- +.+....... ++++.. .+.+++.|+.+ ..+.++|..+.+-.+.-.............
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D-----~tvriWd~~~~~~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD-----GTVRIWDVRTGECVRKLKGHSDGISGLAFS 297 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC-----CcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence 45677777443 21 2233222222 333333 55788888766 457778888855333211111111112222
Q ss_pred ECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeE---EcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCccccccc
Q psy9754 144 INDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWT---TLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSV 220 (306)
Q Consensus 144 ~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~---~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~ 220 (306)
-++.+++.+..+ ..+.+||+.+..-. .+ .....+. ....+....+-.|++.+...
T Consensus 298 ~d~~~l~s~s~d--------~~i~vwd~~~~~~~~~~~~-~~~~~~~-~~~~~~fsp~~~~ll~~~~d------------ 355 (456)
T KOG0266|consen 298 PDGNLLVSASYD--------GTIRVWDLETGSKLCLKLL-SGAENSA-PVTSVQFSPNGKYLLSASLD------------ 355 (456)
T ss_pred CCCCEEEEcCCC--------ccEEEEECCCCceeeeecc-cCCCCCC-ceeEEEECCCCcEEEEecCC------------
Confidence 356666666432 56889999988843 33 2222232 22333333244444444322
Q ss_pred ceeeEEECCCCceE-ecccCCcc-cccceeeee-CCEEEEEeCccCccccccceEEEeeccccc
Q psy9754 221 SDLDVFVSNEKEWK-FVTELVVP-RHAHSASVL-SSQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 221 ~~~~~y~~~~~~W~-~~~~~p~~-~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
..+-.||+....-. ........ +.....+.. +++..+.|+.+ ..+++||+.+..
T Consensus 356 ~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d-------~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSED-------GSVYVWDSSSGG 412 (456)
T ss_pred CeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCC-------ceEEEEeCCccc
Confidence 34566666544322 11111111 222233333 66777777766 678999998733
No 124
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=89.99 E-value=5.5 Score=28.48 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=53.0
Q ss_pred EEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccc--cCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccc
Q psy9754 142 AEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATK--LRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYS 219 (306)
Q Consensus 142 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~ 219 (306)
..+||-+|-..-..... ...+..||..+.+|+.+..+ ..........+..+ |+|.++.-..... ..
T Consensus 2 icinGvly~~a~~~~~~----~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~-G~L~~v~~~~~~~-------~~ 69 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSD----NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYK-GKLALVSYNDQGE-------PD 69 (129)
T ss_pred EEECcEEEeEEEECCCC----CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeC-CeEEEEEecCCCC-------cc
Confidence 34678887766552111 47899999999999888432 22334445666676 9998876543321 01
Q ss_pred cceeeEE-ECCCCceEecc
Q psy9754 220 VSDLDVF-VSNEKEWKFVT 237 (306)
Q Consensus 220 ~~~~~~y-~~~~~~W~~~~ 237 (306)
.-++|+. |....+|.+..
T Consensus 70 ~~~iWvLeD~~k~~Wsk~~ 88 (129)
T PF08268_consen 70 SIDIWVLEDYEKQEWSKKH 88 (129)
T ss_pred eEEEEEeeccccceEEEEE
Confidence 2456666 56678899664
No 125
>KOG1036|consensus
Probab=89.82 E-value=10 Score=31.31 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=68.5
Q ss_pred eEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEE
Q psy9754 116 VECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSV 195 (306)
Q Consensus 116 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~ 195 (306)
+-.||...+.- ...+.....-..++..+..=.+.||.+ ..+..||..+..=..+ .....+-. ++...
T Consensus 37 lrlYdv~~~~l--~~~~~~~~plL~c~F~d~~~~~~G~~d--------g~vr~~Dln~~~~~~i-gth~~~i~--ci~~~ 103 (323)
T KOG1036|consen 37 LRLYDVPANSL--KLKFKHGAPLLDCAFADESTIVTGGLD--------GQVRRYDLNTGNEDQI-GTHDEGIR--CIEYS 103 (323)
T ss_pred EEEEeccchhh--hhheecCCceeeeeccCCceEEEeccC--------ceEEEEEecCCcceee-ccCCCceE--EEEee
Confidence 45566666621 122222222223444554434455543 5788999998876666 33333322 12222
Q ss_pred eCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEe
Q psy9754 196 NNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECW 275 (306)
Q Consensus 196 ~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~y 275 (306)
.....+|.||+. ..+..+|+.+.. .....-.+. -..+..+.+..+++|+.+ ..+.+|
T Consensus 104 ~~~~~vIsgsWD-------------~~ik~wD~R~~~--~~~~~d~~k-kVy~~~v~g~~LvVg~~~-------r~v~iy 160 (323)
T KOG1036|consen 104 YEVGCVISGSWD-------------KTIKFWDPRNKV--VVGTFDQGK-KVYCMDVSGNRLVVGTSD-------RKVLIY 160 (323)
T ss_pred ccCCeEEEcccC-------------ccEEEEeccccc--cccccccCc-eEEEEeccCCEEEEeecC-------ceEEEE
Confidence 223455778886 567888886521 111222222 222334466777777766 578999
Q ss_pred eccccc
Q psy9754 276 CFDRQA 281 (306)
Q Consensus 276 d~~~~~ 281 (306)
|+.+..
T Consensus 161 DLRn~~ 166 (323)
T KOG1036|consen 161 DLRNLD 166 (323)
T ss_pred Eccccc
Confidence 987654
No 126
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.58 E-value=13 Score=32.16 Aligned_cols=140 Identities=11% Similarity=0.179 Sum_probs=75.9
Q ss_pred ceEEEEeCCCCC--eeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCc--EEeccCCcccccceeeE
Q psy9754 67 NSVWSFNPNNKQ--WTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT--WEDVAPLKIARMGMAVA 142 (306)
Q Consensus 67 ~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--w~~~~~~~~~~~~~~~~ 142 (306)
..++.+|+.+++ |+.....-...........+++||+-.... .++++|..+++ |+.-.... .+.....+
T Consensus 78 G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g------~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v 150 (370)
T COG1520 78 GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDG------KLYALDASTGTLVWSRNVGGS-PYYASPPV 150 (370)
T ss_pred CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccc------eEEEEECCCCcEEEEEecCCC-eEEecCcE
Confidence 379999999987 865433201111111222378877765422 68899996554 87654332 33333444
Q ss_pred EECCEEEEEcccCCCCCCCCCccEEEEeCCCCe--eEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCccccccc
Q psy9754 143 EINDKIWIAGGYTGDKMNPVTDKVECYDPRTNT--WTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSV 220 (306)
Q Consensus 143 ~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~ 220 (306)
..++.+|+... .+.++.+|..+.+ |+.-.......+.....+ ..++.+|+-.-. . .
T Consensus 151 ~~~~~v~~~s~---------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~---~-~-------- 208 (370)
T COG1520 151 VGDGTVYVGTD---------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDG---Y-D-------- 208 (370)
T ss_pred EcCcEEEEecC---------CCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCC---C-c--------
Confidence 55677776531 3678888877554 875422211222222222 444667664321 1 1
Q ss_pred ceeeEEECCCC--ceEe
Q psy9754 221 SDLDVFVSNEK--EWKF 235 (306)
Q Consensus 221 ~~~~~y~~~~~--~W~~ 235 (306)
..++.+|+.++ .|+.
T Consensus 209 ~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 209 GILYALNAEDGTLKWSQ 225 (370)
T ss_pred ceEEEEEccCCcEeeee
Confidence 35788888755 4763
No 127
>KOG3545|consensus
Probab=89.49 E-value=9.6 Score=30.56 Aligned_cols=186 Identities=17% Similarity=0.160 Sum_probs=101.9
Q ss_pred eEEEEeCCCCCeeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeC----CCCcEEeccCCcccccceeeEE
Q psy9754 68 SVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDP----VAHTWEDVAPLKIARMGMAVAE 143 (306)
Q Consensus 68 ~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~----~~~~w~~~~~~~~~~~~~~~~~ 143 (306)
.+.......+.|.+-+... ++++|+...... ..+..|.. ....+.+.=.+|..-.+.+-++
T Consensus 11 ~~~~~~~~~GsWmrDpl~~-----------~~r~~~~~~~~~----~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VV 75 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMRDPLPA-----------DDRIYVMNYFDG----LMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVV 75 (249)
T ss_pred EEEeeccccceeecCCCcc-----------cCceEEeccccC----ceEEEeccHHHhhccCcceEEeCCCCccccceEE
Confidence 3444555557785433211 678888844433 44555544 3344555556777778888888
Q ss_pred ECCEEEEEcccCCCCCCCCCccEEEEeCCCCe---eEEcccccC----Cc--c---eeEEEEEEeCCEEEEEcCCCCCCC
Q psy9754 144 INDKIWIAGGYTGDKMNPVTDKVECYDPRTNT---WTTLATKLR----YP--R---YLATLVSVNNEKLYIIGGASQTDA 211 (306)
Q Consensus 144 ~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~---W~~~~~~~~----~~--~---~~~~~~~~~~~~iyi~GG~~~~~~ 211 (306)
++|.+|.-... +..+.+||+.+.. +..++ ... .+ - ...-.++.. .-++++=-..+...
T Consensus 76 ynGs~yynk~~--------t~~ivky~l~~~~~~~~~~lp-~a~y~~~~~y~~~g~sdiD~avDE-~GLWviYat~~~~g 145 (249)
T KOG3545|consen 76 YNGSLYYNKAG--------TRNIIKYDLETRTVAGSAALP-YAGYHNPSPYYWGGHSDIDLAVDE-NGLWVIYATPENAG 145 (249)
T ss_pred EcceEEeeccC--------CcceEEEEeecceeeeeeecc-ccccCCCcccccCCCccccceecc-cceeEEecccccCC
Confidence 99998886521 5678999998854 55552 211 11 0 111223333 44444433332222
Q ss_pred CCcccccccceeeEEECCCCceEecccCCcc-cccceeeeeCCEEEEEeCccCccccccceE-EEeeccccceeccCCCC
Q psy9754 212 TNTQKMYSVSDLDVFVSNEKEWKFVTELVVP-RHAHSASVLSSQILIIGGVTTVYKRTLKSV-ECWCFDRQAWIKGVSGL 289 (306)
Q Consensus 212 ~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~-~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~-~~yd~~~~~W~~~~~~~ 289 (306)
. ..+-++|+.+-.-+..-....+ +....+.++-|.+|++-...... ..+ +.||..+++=+. .++
T Consensus 146 ~--------iv~skLdp~tl~~e~tW~T~~~k~~~~~aF~iCGvLY~v~S~~~~~----~~i~yaydt~~~~~~~--~~i 211 (249)
T KOG3545|consen 146 T--------IVLSKLDPETLEVERTWNTTLPKRSAGNAFMICGVLYVVHSYNCTH----TQISYAYDTTTGTQER--IDL 211 (249)
T ss_pred c--------EEeeccCHHHhheeeeeccccCCCCcCceEEEeeeeEEEeccccCC----ceEEEEEEcCCCceec--ccc
Confidence 1 2345566643333333233333 44455666799999997766432 223 789998877654 344
Q ss_pred ccc
Q psy9754 290 PAT 292 (306)
Q Consensus 290 p~~ 292 (306)
|.+
T Consensus 212 pf~ 214 (249)
T KOG3545|consen 212 PFP 214 (249)
T ss_pred ccc
Confidence 433
No 128
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=89.13 E-value=13 Score=31.74 Aligned_cols=217 Identities=13% Similarity=0.103 Sum_probs=102.8
Q ss_pred EEEEEeec--Cceeeecccc---ccccc-----ceEEEEeCccCcCCCCcccceeeceEEEEeCCCCCeeeCCCCCCCcc
Q psy9754 21 LVIWIMDI--VTYDLSIERV---SQRYD-----VKINSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRK 90 (306)
Q Consensus 21 ~~~~~~~~--~~W~~~~~~p---~~r~~-----~~~i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~ 90 (306)
..++.||. .+++.+.... .|.+- ...||+........ ..-..+.++..+++.+.+...+....
T Consensus 15 I~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~-------g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 15 IYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDS-------GGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTT-------TEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred EEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCC-------CCEEEEEECCCcceeEEeeeeccCCC
Confidence 34677766 5676554332 22221 11178775433111 23345666666678877766553333
Q ss_pred ceeeEEE---CCEEEEEccCCCCCCCceeEEEeCCCC-cEEecc---------CC---cccccceeeEEE-C-CEEEEEc
Q psy9754 91 IFSFVSC---LDKIYAIGGQDCKTLLSSVECYDPVAH-TWEDVA---------PL---KIARMGMAVAEI-N-DKIWIAG 152 (306)
Q Consensus 91 ~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~-~w~~~~---------~~---~~~~~~~~~~~~-~-~~iyv~G 152 (306)
..+.+.+ +..||+..-. ...+.+|+.... +-.... +- ......|.+... + +.+|+..
T Consensus 88 ~p~~i~~~~~g~~l~vany~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp CEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred CcEEEEEecCCCEEEEEEcc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 3333333 4466666321 255667776653 222211 11 112223344333 3 4677653
Q ss_pred ccCCCCCCCCCccEEEEeCCCCe--eEEcc-cccCCcceeEEEEEEeC-CEEEEEcCCCCCCCCCcccccccceeeEEEC
Q psy9754 153 GYTGDKMNPVTDKVECYDPRTNT--WTTLA-TKLRYPRYLATLVSVNN-EKLYIIGGASQTDATNTQKMYSVSDLDVFVS 228 (306)
Q Consensus 153 G~~~~~~~~~~~~~~~~d~~~~~--W~~~~-~~~~~~~~~~~~~~~~~-~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~ 228 (306)
.. .+.++.|+.+... .+... ...+....-..++...+ ..+|++...+ +.+.+|+.
T Consensus 163 -lG-------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-------------~~v~v~~~ 221 (345)
T PF10282_consen 163 -LG-------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-------------NTVSVFDY 221 (345)
T ss_dssp -TT-------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT-------------TEEEEEEE
T ss_pred -cC-------CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC-------------CcEEEEee
Confidence 11 4678888877665 54431 11122111113344433 5788887554 44555555
Q ss_pred C--CCceEecc---cCCcccc---cceeeee--CC-EEEEEeCccCccccccceEEEeec
Q psy9754 229 N--EKEWKFVT---ELVVPRH---AHSASVL--SS-QILIIGGVTTVYKRTLKSVECWCF 277 (306)
Q Consensus 229 ~--~~~W~~~~---~~p~~~~---~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~~~yd~ 277 (306)
. ...++.+. .+|.... ..+...+ ++ .||+..... +.+.+|++
T Consensus 222 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~-------~sI~vf~~ 274 (345)
T PF10282_consen 222 DPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS-------NSISVFDL 274 (345)
T ss_dssp ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT-------TEEEEEEE
T ss_pred cccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC-------CEEEEEEE
Confidence 4 66666443 3433211 2222223 44 567654333 56778877
No 129
>PTZ00421 coronin; Provisional
Probab=89.04 E-value=17 Score=32.88 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=28.0
Q ss_pred ceEEEEeCCCCCeeeCCCCCC-CccceeeEE-ECCEEEEEccCCCCCCCceeEEEeCCCCc
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTY-PRKIFSFVS-CLDKIYAIGGQDCKTLLSSVECYDPVAHT 125 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~-~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 125 (306)
..+..+|..+++-.. .+.. ...-.++.. -++.+++.|+.+ ..+.+||+.+++
T Consensus 148 gtVrIWDl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~ 201 (493)
T PTZ00421 148 MVVNVWDVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGT 201 (493)
T ss_pred CEEEEEECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCC-----CEEEEEECCCCc
Confidence 457778887764221 1111 111122222 266777777754 457788988765
No 130
>KOG0315|consensus
Probab=88.38 E-value=12 Score=30.14 Aligned_cols=189 Identities=13% Similarity=0.119 Sum_probs=94.5
Q ss_pred ceEEEEeCccCcCCCCcccceeeceEEEEeCCCCCeeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCC
Q psy9754 44 VKINSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVA 123 (306)
Q Consensus 44 ~~~i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~ 123 (306)
+.+|++..|++. ++-.+...|++-..--.-+......-...-+++....+|. ..+-.||..+
T Consensus 9 ~~viLvsA~YDh------------TIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~------qhvRlyD~~S 70 (311)
T KOG0315|consen 9 DPVILVSAGYDH------------TIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN------QHVRLYDLNS 70 (311)
T ss_pred CceEEEeccCcc------------eeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC------CeeEEEEccC
Confidence 455666666542 3333444555543322223333333223335566666663 4577899988
Q ss_pred CcEEeccCCcccccceee--EEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEE
Q psy9754 124 HTWEDVAPLKIARMGMAV--AEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLY 201 (306)
Q Consensus 124 ~~w~~~~~~~~~~~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iy 201 (306)
+.=..+..+-......++ ..++++....||-+ ..+-++|...-.-++. -..+.|-. +++... ++--
T Consensus 71 ~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD--------gt~kIWdlR~~~~qR~-~~~~spVn--~vvlhp-nQte 138 (311)
T KOG0315|consen 71 NNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED--------GTVKIWDLRSLSCQRN-YQHNSPVN--TVVLHP-NQTE 138 (311)
T ss_pred CCCCceeEEeccCCceEEEEEeecCeEEEecCCC--------ceEEEEeccCcccchh-ccCCCCcc--eEEecC-Ccce
Confidence 863333222222222222 33578888888754 3455666666444444 22232321 233333 3333
Q ss_pred EEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCccc-ccceeeee-CCEEEEEeCccCccccccceEEEeeccc
Q psy9754 202 IIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPR-HAHSASVL-SSQILIIGGVTTVYKRTLKSVECWCFDR 279 (306)
Q Consensus 202 i~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~-~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~ 279 (306)
++-|... ..++++|+.++...... +|..- .-.++.+. +|.+++.. .+. .++++|+.-+
T Consensus 139 Lis~dqs------------g~irvWDl~~~~c~~~l-iPe~~~~i~sl~v~~dgsml~a~-nnk------G~cyvW~l~~ 198 (311)
T KOG0315|consen 139 LISGDQS------------GNIRVWDLGENSCTHEL-IPEDDTSIQSLTVMPDGSMLAAA-NNK------GNCYVWRLLN 198 (311)
T ss_pred EEeecCC------------CcEEEEEccCCcccccc-CCCCCcceeeEEEcCCCcEEEEe-cCC------ccEEEEEccC
Confidence 3333321 56899999988765332 22222 22233333 66665554 333 5788998866
Q ss_pred cce
Q psy9754 280 QAW 282 (306)
Q Consensus 280 ~~W 282 (306)
.+-
T Consensus 199 ~~~ 201 (311)
T KOG0315|consen 199 HQT 201 (311)
T ss_pred CCc
Confidence 443
No 131
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=88.15 E-value=10 Score=29.32 Aligned_cols=102 Identities=21% Similarity=0.203 Sum_probs=55.6
Q ss_pred CEEEEEccCCCCCCCceeEEEeCCCCcE---EeccC--Ccc--cccceeeEEE-CCEEEEEcccCCCCCCCCCccEEEEe
Q psy9754 99 DKIYAIGGQDCKTLLSSVECYDPVAHTW---EDVAP--LKI--ARMGMAVAEI-NDKIWIAGGYTGDKMNPVTDKVECYD 170 (306)
Q Consensus 99 ~~iyv~GG~~~~~~~~~~~~~d~~~~~w---~~~~~--~~~--~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~d 170 (306)
+++|+|-| +..|+|+..+... +.+.. ++. ....++...- ++++|++.| +..++||
T Consensus 63 ~~~yfFkg-------~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg----------~~y~ry~ 125 (194)
T cd00094 63 GKIYFFKG-------DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG----------DKYWRYD 125 (194)
T ss_pred CEEEEECC-------CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC----------CEEEEEe
Confidence 89999977 5678887664221 11211 111 2222333222 689999987 4567777
Q ss_pred CCCCeeEEc-----ccc-cCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCc
Q psy9754 171 PRTNTWTTL-----ATK-LRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKE 232 (306)
Q Consensus 171 ~~~~~W~~~-----~~~-~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~ 232 (306)
..+++...- ... +..+..-.++....++++|++-| ...++||..+.+
T Consensus 126 ~~~~~v~~~yP~~i~~~w~g~p~~idaa~~~~~~~~yfF~g---------------~~y~~~d~~~~~ 178 (194)
T cd00094 126 EKTQKMDPGYPKLIETDFPGVPDKVDAAFRWLDGYYYFFKG---------------DQYWRFDPRSKE 178 (194)
T ss_pred CCCccccCCCCcchhhcCCCcCCCcceeEEeCCCcEEEEEC---------------CEEEEEeCccce
Confidence 655543211 000 11122112334444589999977 457889887665
No 132
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.69 E-value=14 Score=30.27 Aligned_cols=182 Identities=9% Similarity=0.054 Sum_probs=96.9
Q ss_pred eEEEEeCCCCCeeeCCCCCCCc--cceeeEEE--CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeE-
Q psy9754 68 SVWSFNPNNKQWTQEPNMTYPR--KIFSFVSC--LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVA- 142 (306)
Q Consensus 68 ~~~~~d~~t~~W~~~~~~~~~~--~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~- 142 (306)
.+-++|+++..-++.+ +|..+ .+.-..+. .+.++..|-..- --++||.++.-+..+.. ....-.++|
T Consensus 125 aI~R~dpkt~evt~f~-lp~~~a~~nlet~vfD~~G~lWFt~q~G~------yGrLdPa~~~i~vfpaP-qG~gpyGi~a 196 (353)
T COG4257 125 AIGRLDPKTLEVTRFP-LPLEHADANLETAVFDPWGNLWFTGQIGA------YGRLDPARNVISVFPAP-QGGGPYGICA 196 (353)
T ss_pred eeEEecCcccceEEee-cccccCCCcccceeeCCCccEEEeecccc------ceecCcccCceeeeccC-CCCCCcceEE
Confidence 6888999887665543 23333 23333444 357777753211 11466766665544432 222223333
Q ss_pred EECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccce
Q psy9754 143 EINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSD 222 (306)
Q Consensus 143 ~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~ 222 (306)
.-++.+|+..=. -+.+-..|+.+..=+.++.+..+....-.+-....+++.+..-. ...
T Consensus 197 tpdGsvwyasla--------gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg-------------~g~ 255 (353)
T COG4257 197 TPDGSVWYASLA--------GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG-------------TGS 255 (353)
T ss_pred CCCCcEEEEecc--------ccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccC-------------Cce
Confidence 357888886311 25677788887755555222111111111122223678776221 156
Q ss_pred eeEEECCCCceEecccCCc-ccccceeeeeCCEEEEEeCccCccccccceEEEeeccccceecc
Q psy9754 223 LDVFVSNEKEWKFVTELVV-PRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKG 285 (306)
Q Consensus 223 ~~~y~~~~~~W~~~~~~p~-~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~ 285 (306)
+++||+....|.+..-.-. +|.+..-+.-.|++++-.-.. +.+..||+++.+.+.+
T Consensus 256 l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~a-------gai~rfdpeta~ftv~ 312 (353)
T COG4257 256 LHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADA-------GAIGRFDPETARFTVL 312 (353)
T ss_pred eeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecccc-------CceeecCcccceEEEe
Confidence 8999999999997653222 222222222355666632222 4678999999888774
No 133
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.24 E-value=20 Score=31.46 Aligned_cols=170 Identities=8% Similarity=0.069 Sum_probs=80.3
Q ss_pred CCeeeCCCCC-CCccceeeEEE-CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCc------ccc------------
Q psy9754 77 KQWTQEPNMT-YPRKIFSFVSC-LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLK------IAR------------ 136 (306)
Q Consensus 77 ~~W~~~~~~~-~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~------~~~------------ 136 (306)
.+|+.++..+ .+........+ ++.++++|.. ..+++=+-...+|+.+...+ ...
T Consensus 166 ~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~G 239 (398)
T PLN00033 166 ETWERIPLSPKLPGEPVLIKATGPKSAEMVTDE------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTG 239 (398)
T ss_pred CCceECccccCCCCCceEEEEECCCceEEEecc------ceEEEECCCCCCceEcccccccccccccccccccccceecc
Confidence 5798875432 12112233334 4567777742 33555555567898862211 100
Q ss_pred cceeeE-EECCEEEEEcccCCCCCCCCCccEEEE-eCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCc
Q psy9754 137 MGMAVA-EINDKIWIAGGYTGDKMNPVTDKVECY-DPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNT 214 (306)
Q Consensus 137 ~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~-d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~ 214 (306)
....+. .-++.++++|- ...+++- |.....|+.+ ... .++...++....++.++++|...
T Consensus 240 sf~~v~~~~dG~~~~vg~---------~G~~~~s~d~G~~~W~~~-~~~-~~~~l~~v~~~~dg~l~l~g~~G------- 301 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSS---------RGNFYLTWEPGQPYWQPH-NRA-SARRIQNMGWRADGGLWLLTRGG------- 301 (398)
T ss_pred ceeeEEEcCCCCEEEEEC---------CccEEEecCCCCcceEEe-cCC-CccceeeeeEcCCCCEEEEeCCc-------
Confidence 001111 12344555542 2333433 3333449988 322 23333444455568999887432
Q ss_pred ccccccceeeEEECCCCce-----EecccCCcccccceeeee-CCEEEEEeCccCccccccceEEEeeccccceecc
Q psy9754 215 QKMYSVSDLDVFVSNEKEW-----KFVTELVVPRHAHSASVL-SSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKG 285 (306)
Q Consensus 215 ~~~~~~~~~~~y~~~~~~W-----~~~~~~p~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~ 285 (306)
.+..-+-....| ..+..........++... ++.++++|..- .+.+-...-+.|+..
T Consensus 302 -------~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G--------~v~~s~D~G~tW~~~ 363 (398)
T PLN00033 302 -------GLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSG--------ILLRSTDGGKSWKRD 363 (398)
T ss_pred -------eEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCC--------cEEEeCCCCcceeEc
Confidence 223322233334 443321112223334344 67888887643 244445567788773
No 134
>KOG2321|consensus
Probab=86.98 E-value=6.7 Score=35.31 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=54.0
Q ss_pred eeceEEEEeCCCCCeeeCCCCCCCccceeeEEEC--CEEEEEccCCCCCCCceeEEEeCCCCcEE-e------ccCCccc
Q psy9754 65 VSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCL--DKIYAIGGQDCKTLLSSVECYDPVAHTWE-D------VAPLKIA 135 (306)
Q Consensus 65 ~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~d~~~~~w~-~------~~~~~~~ 135 (306)
...++|++|++.++| +.++...-...-++.++ ..++++||.+ ..++.+|+...+-. . ++..|..
T Consensus 153 sg~evYRlNLEqGrf--L~P~~~~~~~lN~v~in~~hgLla~Gt~~-----g~VEfwDpR~ksrv~~l~~~~~v~s~pg~ 225 (703)
T KOG2321|consen 153 SGSEVYRLNLEQGRF--LNPFETDSGELNVVSINEEHGLLACGTED-----GVVEFWDPRDKSRVGTLDAASSVNSHPGG 225 (703)
T ss_pred cCcceEEEEcccccc--ccccccccccceeeeecCccceEEecccC-----ceEEEecchhhhhheeeecccccCCCccc
Confidence 357899999999998 33333222223334443 4677777754 45788888876622 1 2223322
Q ss_pred ccc--eeeEE-ECCEEEEEcccCCCCCCCCCccEEEEeCCCCe
Q psy9754 136 RMG--MAVAE-INDKIWIAGGYTGDKMNPVTDKVECYDPRTNT 175 (306)
Q Consensus 136 ~~~--~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~ 175 (306)
-.. .++.. -++-|-+.-|.. .+.++.||+.+.+
T Consensus 226 ~~~~svTal~F~d~gL~~aVGts-------~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 226 DAAPSVTALKFRDDGLHVAVGTS-------TGSVLIYDLRASK 261 (703)
T ss_pred cccCcceEEEecCCceeEEeecc-------CCcEEEEEcccCC
Confidence 111 22222 343555555544 4678888877654
No 135
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=86.81 E-value=19 Score=30.90 Aligned_cols=115 Identities=8% Similarity=-0.095 Sum_probs=65.7
Q ss_pred eeEEecccccceeEEEEEEeecCceeeecccccccccceE-------EEEeCccCcCCCCcccceeeceEEEEeCCCCCe
Q psy9754 7 WELICKEGTEGIKLLVIWIMDIVTYDLSIERVSQRYDVKI-------NSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQW 79 (306)
Q Consensus 7 ~~l~~~gG~~~~~~~~~~~~~~~~W~~~~~~p~~r~~~~~-------i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W 79 (306)
..+||.-.....-...+..+|..+++.++.++.....+.+ ||+.-.+..-... + +..+.+..||+.|.+-
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~-G--~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIAR-G--KRTDYVEVIDPQTHLP 89 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEecccccccc-C--CCCCEEEEEECccCcE
Confidence 3567766642111256778888778777666654443334 8888764322211 1 1467899999999875
Q ss_pred ee-CCCCCCCccc-----eeeE-EECC-EEEEEccCCCCCCCceeEEEeCCCCcEEe
Q psy9754 80 TQ-EPNMTYPRKI-----FSFV-SCLD-KIYAIGGQDCKTLLSSVECYDPVAHTWED 128 (306)
Q Consensus 80 ~~-~~~~~~~~~~-----~~~~-~~~~-~iyv~GG~~~~~~~~~~~~~d~~~~~w~~ 128 (306)
.. ++..+.||.. ...+ .-++ .+|+..- .....+-+.|..+++--.
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~----~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF----SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEecC----CCCCEEEEEECCCCcEEE
Confidence 43 3322333311 1222 2244 5777632 224778899999998654
No 136
>KOG0289|consensus
Probab=86.42 E-value=21 Score=31.06 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=77.1
Q ss_pred cceeeEEE-CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceee--EEECCEEEEEcccCCCCCCCCCccE
Q psy9754 90 KIFSFVSC-LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAV--AEINDKIWIAGGYTGDKMNPVTDKV 166 (306)
Q Consensus 90 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~~ 166 (306)
...+++.+ |+.|+..|-.+ ..+-+||..+.+ .+..+|.....-.+ ...||+..+.+ .++ .++
T Consensus 349 ~~ts~~fHpDgLifgtgt~d-----~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~-add-------~~V 413 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPD-----GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATA-ADD-------GSV 413 (506)
T ss_pred eeEEeeEcCCceEEeccCCC-----ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEE-ecC-------CeE
Confidence 34555555 56666665533 446678888777 55556542111122 22355544443 221 347
Q ss_pred EEEeCCCCe-eEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCccccc
Q psy9754 167 ECYDPRTNT-WTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHA 245 (306)
Q Consensus 167 ~~~d~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~ 245 (306)
-.+|+.... ...+ .++....-.+......+...+++|.. -.++.++-.+..|+.+..++....-
T Consensus 414 ~lwDLRKl~n~kt~--~l~~~~~v~s~~fD~SGt~L~~~g~~-------------l~Vy~~~k~~k~W~~~~~~~~~sg~ 478 (506)
T KOG0289|consen 414 KLWDLRKLKNFKTI--QLDEKKEVNSLSFDQSGTYLGIAGSD-------------LQVYICKKKTKSWTEIKELADHSGL 478 (506)
T ss_pred EEEEehhhccccee--eccccccceeEEEcCCCCeEEeecce-------------eEEEEEecccccceeeehhhhcccc
Confidence 888877654 2222 11111111222233346666777643 5678888889999999988766544
Q ss_pred ceeeee-CCEEEEEeCcc
Q psy9754 246 HSASVL-SSQILIIGGVT 262 (306)
Q Consensus 246 ~~~~~~-~~~i~v~GG~~ 262 (306)
...+.+ +...|++.|..
T Consensus 479 st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 479 STGVRFGEHAQYLASTSM 496 (506)
T ss_pred cceeeecccceEEeeccc
Confidence 455555 44455554433
No 137
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=85.43 E-value=24 Score=30.64 Aligned_cols=142 Identities=8% Similarity=0.047 Sum_probs=68.5
Q ss_pred ceEEEEeCCCCCeeeCCCCCCCccceeeEEE-CCEEEEEccCCCCCCCceeEEEeCCCCcEE-eccC--Cc----ccccc
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC-LDKIYAIGGQDCKTLLSSVECYDPVAHTWE-DVAP--LK----IARMG 138 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~-~~~~--~~----~~~~~ 138 (306)
..+-.+|+.+++ .+...+......+++.. +++..+.+.+.. ..+.++|..+.+-. .++. ++ .+|..
T Consensus 58 g~vsviD~~~~~--~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~----~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~ 131 (369)
T PF02239_consen 58 GTVSVIDLATGK--VVATIKVGGNPRGIAVSPDGKYVYVANYEP----GTVSVIDAETLEPVKTIPTGGMPVDGPESRVA 131 (369)
T ss_dssp SEEEEEETTSSS--EEEEEE-SSEEEEEEE--TTTEEEEEEEET----TEEEEEETTT--EEEEEE--EE-TTTS---EE
T ss_pred CeEEEEECCccc--EEEEEecCCCcceEEEcCCCCEEEEEecCC----CceeEeccccccceeecccccccccccCCCce
Confidence 468899998876 34444444444444443 555444444333 67888998877633 3322 11 22332
Q ss_pred eeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCccccc
Q psy9754 139 MAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMY 218 (306)
Q Consensus 139 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~ 218 (306)
.-.....+..|++.-.. ...++..|.....=... ......+.-+......+++-++.+-..
T Consensus 132 aIv~s~~~~~fVv~lkd-------~~~I~vVdy~d~~~~~~-~~i~~g~~~~D~~~dpdgry~~va~~~----------- 192 (369)
T PF02239_consen 132 AIVASPGRPEFVVNLKD-------TGEIWVVDYSDPKNLKV-TTIKVGRFPHDGGFDPDGRYFLVAANG----------- 192 (369)
T ss_dssp EEEE-SSSSEEEEEETT-------TTEEEEEETTTSSCEEE-EEEE--TTEEEEEE-TTSSEEEEEEGG-----------
T ss_pred eEEecCCCCEEEEEEcc-------CCeEEEEEeccccccce-eeecccccccccccCcccceeeecccc-----------
Confidence 22233345556654333 46777777655421111 222334454555555545555544221
Q ss_pred ccceeeEEECCCCceE
Q psy9754 219 SVSDLDVFVSNEKEWK 234 (306)
Q Consensus 219 ~~~~~~~y~~~~~~W~ 234 (306)
.+.+-+.|.++.+-.
T Consensus 193 -sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 193 -SNKIAVIDTKTGKLV 207 (369)
T ss_dssp -GTEEEEEETTTTEEE
T ss_pred -cceeEEEeeccceEE
Confidence 256778888776544
No 138
>KOG0296|consensus
Probab=84.50 E-value=24 Score=29.97 Aligned_cols=144 Identities=10% Similarity=0.120 Sum_probs=80.2
Q ss_pred CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccc--cceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCC--C
Q psy9754 98 LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIAR--MGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPR--T 173 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~--~ 173 (306)
+..+.+-||-++ ..+.++..++.| +..++.-. .-.....+++.+...|+.+ ..+.+++.. .
T Consensus 75 ~~~l~aTGGgDD-----~AflW~~~~ge~--~~eltgHKDSVt~~~FshdgtlLATGdms--------G~v~v~~~stg~ 139 (399)
T KOG0296|consen 75 NNNLVATGGGDD-----LAFLWDISTGEF--AGELTGHKDSVTCCSFSHDGTLLATGDMS--------GKVLVFKVSTGG 139 (399)
T ss_pred CCceEEecCCCc-----eEEEEEccCCcc--eeEecCCCCceEEEEEccCceEEEecCCC--------ccEEEEEcccCc
Confidence 456777777553 456677777774 22222211 2223344677777777755 345555544 4
Q ss_pred CeeEEcccccCCcceeEEEEEE-eCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeC
Q psy9754 174 NTWTTLATKLRYPRYLATLVSV-NNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLS 252 (306)
Q Consensus 174 ~~W~~~~~~~~~~~~~~~~~~~-~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~ 252 (306)
..|.-. ..... ..-... ...+|+++|-.. ..+|.|.+.+..-.++-+=+..+..++...-+
T Consensus 140 ~~~~~~-~e~~d----ieWl~WHp~a~illAG~~D-------------GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd 201 (399)
T KOG0296|consen 140 EQWKLD-QEVED----IEWLKWHPRAHILLAGSTD-------------GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD 201 (399)
T ss_pred eEEEee-cccCc----eEEEEecccccEEEeecCC-------------CcEEEEECCCcceeeEecCCCCCcccccccCC
Confidence 456554 21111 111222 236777776543 46799988875434443333444444555557
Q ss_pred CEEEEEeCccCccccccceEEEeeccccc
Q psy9754 253 SQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 253 ~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
|+..+.|-.+ ..+.+|++.+.+
T Consensus 202 GKr~~tgy~d-------gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 202 GKRILTGYDD-------GTIIVWNPKTGQ 223 (399)
T ss_pred CceEEEEecC-------ceEEEEecCCCc
Confidence 8777777665 567888888764
No 139
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=84.35 E-value=27 Score=30.33 Aligned_cols=180 Identities=14% Similarity=0.132 Sum_probs=87.4
Q ss_pred eceEEEEeCCCCCeeeCCCCCCCcccee-eEEE--CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeE
Q psy9754 66 SNSVWSFNPNNKQWTQEPNMTYPRKIFS-FVSC--LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVA 142 (306)
Q Consensus 66 ~~~~~~~d~~t~~W~~~~~~~~~~~~~~-~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~ 142 (306)
.+.+..+|..+++-. ..++.....|. .+.. +..+|+.+. + ..+.++|+.+.+ .+...+........+
T Consensus 15 ~~~v~viD~~t~~~~--~~i~~~~~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~--~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 15 SGSVAVIDGATNKVV--ARIPTGGAPHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGK--VVATIKVGGNPRGIA 84 (369)
T ss_dssp GTEEEEEETTT-SEE--EEEE-STTEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSS--EEEEEE-SSEEEEEE
T ss_pred CCEEEEEECCCCeEE--EEEcCCCCceeEEEecCCCCEEEEEcC-C-----CeEEEEECCccc--EEEEEecCCCcceEE
Confidence 567889998886532 22222222243 3333 357999853 2 468889999998 333333333333333
Q ss_pred E-ECCEEEEEcccCCCCCCCCCccEEEEeCCCCee-EEcc-ccc----CCcceeEEEEEEeCCEEEEEcCCCCCCCCCcc
Q psy9754 143 E-INDKIWIAGGYTGDKMNPVTDKVECYDPRTNTW-TTLA-TKL----RYPRYLATLVSVNNEKLYIIGGASQTDATNTQ 215 (306)
Q Consensus 143 ~-~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W-~~~~-~~~----~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~ 215 (306)
+ -+++..+++.+. .+.+.++|.++.+= ..++ ... +.+|. .+.+.......|++.-..
T Consensus 85 ~s~DG~~~~v~n~~-------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv-~aIv~s~~~~~fVv~lkd-------- 148 (369)
T PF02239_consen 85 VSPDGKYVYVANYE-------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRV-AAIVASPGRPEFVVNLKD-------- 148 (369)
T ss_dssp E--TTTEEEEEEEE-------TTEEEEEETTT--EEEEEE--EE-TTTS---E-EEEEE-SSSSEEEEEETT--------
T ss_pred EcCCCCEEEEEecC-------CCceeEeccccccceeecccccccccccCCCc-eeEEecCCCCEEEEEEcc--------
Confidence 3 455544444333 36788999888753 2221 111 22343 233333335556664332
Q ss_pred cccccceeeEEECCCCceEecccCCcccccceeeee-CCEEEEEeCccCccccccceEEEeeccccc
Q psy9754 216 KMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVL-SSQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 216 ~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
...++..|.....=.....+...+..|....- +++-|+++-... +.+-+.|.++++
T Consensus 149 ----~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s------n~i~viD~~~~k 205 (369)
T PF02239_consen 149 ----TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS------NKIAVIDTKTGK 205 (369)
T ss_dssp ----TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG------TEEEEEETTTTE
T ss_pred ----CCeEEEEEeccccccceeeecccccccccccCcccceeeeccccc------ceeEEEeeccce
Confidence 25678888765432233334445555555544 445554443222 466677766654
No 140
>KOG1036|consensus
Probab=83.73 E-value=24 Score=29.27 Aligned_cols=131 Identities=11% Similarity=0.181 Sum_probs=66.4
Q ss_pred eEEEEeCCCCCeeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEECCE
Q psy9754 68 SVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDK 147 (306)
Q Consensus 68 ~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~ 147 (306)
.+-.||..++.- ...+........++..+..=.+.||.+ ..+-+||..+..-.++.....+..+..-....+
T Consensus 36 slrlYdv~~~~l--~~~~~~~~plL~c~F~d~~~~~~G~~d-----g~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~- 107 (323)
T KOG1036|consen 36 SLRLYDVPANSL--KLKFKHGAPLLDCAFADESTIVTGGLD-----GQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG- 107 (323)
T ss_pred cEEEEeccchhh--hhheecCCceeeeeccCCceEEEeccC-----ceEEEEEecCCcceeeccCCCceEEEEeeccCC-
Confidence 455666665521 111122222233444565555566655 347789999888777765444333222222233
Q ss_pred EEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEE
Q psy9754 148 IWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFV 227 (306)
Q Consensus 148 iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~ 227 (306)
.+|.||++ ..+...|+.+..-. .....+..-.++ .+. +.++++|+.. ..+..||
T Consensus 108 ~vIsgsWD--------~~ik~wD~R~~~~~---~~~d~~kkVy~~-~v~-g~~LvVg~~~-------------r~v~iyD 161 (323)
T KOG1036|consen 108 CVISGSWD--------KTIKFWDPRNKVVV---GTFDQGKKVYCM-DVS-GNRLVVGTSD-------------RKVLIYD 161 (323)
T ss_pred eEEEcccC--------ccEEEEeccccccc---cccccCceEEEE-ecc-CCEEEEeecC-------------ceEEEEE
Confidence 46677765 45677777652111 111111121223 333 5566666654 5678898
Q ss_pred CCCCc
Q psy9754 228 SNEKE 232 (306)
Q Consensus 228 ~~~~~ 232 (306)
+.+..
T Consensus 162 LRn~~ 166 (323)
T KOG1036|consen 162 LRNLD 166 (323)
T ss_pred ccccc
Confidence 87654
No 141
>PRK02889 tolB translocation protein TolB; Provisional
Probab=83.37 E-value=32 Score=30.48 Aligned_cols=180 Identities=8% Similarity=-0.035 Sum_probs=88.9
Q ss_pred ceEEEEeCCCCCeeeCCCCCCCccceeeEEE-CC-EEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEE
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC-LD-KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEI 144 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~ 144 (306)
..++.+|+.+++=..+...+. ........ ++ +|++....+. ..++|.+|..++..+++......... ....-
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g--~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~-~~wSp 293 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKG--SNSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQSSGIDTE-PFFSP 293 (427)
T ss_pred cEEEEEECCCCCEEEeecCCC--CccceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECCCCCCCCcC-eEEcC
Confidence 569999998886555544331 11222222 44 5554433222 36788899887776665432211111 12222
Q ss_pred CC-EEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCC-EEEEEcCCCCCCCCCcccccccce
Q psy9754 145 ND-KIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNE-KLYIIGGASQTDATNTQKMYSVSD 222 (306)
Q Consensus 145 ~~-~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~iyi~GG~~~~~~~~~~~~~~~~~ 222 (306)
++ +|++.....+ ...++.+|..+...+.+ ... ...........++ .|+....... ...
T Consensus 294 DG~~l~f~s~~~g------~~~Iy~~~~~~g~~~~l-t~~--g~~~~~~~~SpDG~~Ia~~s~~~g-----------~~~ 353 (427)
T PRK02889 294 DGRSIYFTSDRGG------APQIYRMPASGGAAQRV-TFT--GSYNTSPRISPDGKLLAYISRVGG-----------AFK 353 (427)
T ss_pred CCCEEEEEecCCC------CcEEEEEECCCCceEEE-ecC--CCCcCceEECCCCCEEEEEEccCC-----------cEE
Confidence 44 5555432111 24688888877777666 211 1111122222234 4544433211 146
Q ss_pred eeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeecc
Q psy9754 223 LDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFD 278 (306)
Q Consensus 223 ~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~ 278 (306)
++++|+.++..+.+..-. ....-...-+++.+++...... ...+++.+..
T Consensus 354 I~v~d~~~g~~~~lt~~~--~~~~p~~spdg~~l~~~~~~~g----~~~l~~~~~~ 403 (427)
T PRK02889 354 LYVQDLATGQVTALTDTT--RDESPSFAPNGRYILYATQQGG----RSVLAAVSSD 403 (427)
T ss_pred EEEEECCCCCeEEccCCC--CccCceECCCCCEEEEEEecCC----CEEEEEEECC
Confidence 889999888776654321 1111122236666666544321 1456677764
No 142
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=83.03 E-value=26 Score=29.13 Aligned_cols=158 Identities=13% Similarity=0.040 Sum_probs=84.2
Q ss_pred eeCCCCCCC--ccceeeEEECCEEEEEccCCCC-----------------CCCceeEEEeCCCCcEEec--cCCcccccc
Q psy9754 80 TQEPNMTYP--RKIFSFVSCLDKIYAIGGQDCK-----------------TLLSSVECYDPVAHTWEDV--APLKIARMG 138 (306)
Q Consensus 80 ~~~~~~~~~--~~~~~~~~~~~~iyv~GG~~~~-----------------~~~~~~~~~d~~~~~w~~~--~~~~~~~~~ 138 (306)
+.+++.|.+ -.+.++..+++.||.-| +-.. .-.+.+-.||.++.+-+.+ ..+..+...
T Consensus 26 elvG~~P~SGGDTYNAV~~vDd~IyFGG-WVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~W 104 (339)
T PF09910_consen 26 ELVGPPPTSGGDTYNAVEWVDDFIYFGG-WVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKW 104 (339)
T ss_pred eeccCCCCCCCccceeeeeecceEEEee-eecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCcccc
Confidence 456666654 23445556688887654 3211 1235677888888874333 222333333
Q ss_pred eeeEE------ECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCC
Q psy9754 139 MAVAE------INDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDAT 212 (306)
Q Consensus 139 ~~~~~------~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~ 212 (306)
++=+. ++++|++.-+-. +. .--++..|..+..-+.+ ...|.+. ...+. +..+. +=.+-..
T Consensus 105 aGEVSdIlYdP~~D~LLlAR~DG-h~----nLGvy~ldr~~g~~~~L-~~~ps~K----G~~~~-D~a~F-~i~~~~~-- 170 (339)
T PF09910_consen 105 AGEVSDILYDPYEDRLLLARADG-HA----NLGVYSLDRRTGKAEKL-SSNPSLK----GTLVH-DYACF-GINNFHK-- 170 (339)
T ss_pred ccchhheeeCCCcCEEEEEecCC-cc----eeeeEEEcccCCceeec-cCCCCcC----ceEee-eeEEE-ecccccc--
Confidence 32221 367888875422 11 24678888888888888 4444332 22333 22222 1111111
Q ss_pred CcccccccceeeEEECCCCce--EecccC-------CcccccceeeeeCCEEEEE
Q psy9754 213 NTQKMYSVSDLDVFVSNEKEW--KFVTEL-------VVPRHAHSASVLSSQILII 258 (306)
Q Consensus 213 ~~~~~~~~~~~~~y~~~~~~W--~~~~~~-------p~~~~~~~~~~~~~~i~v~ 258 (306)
-...+.+||+.+++| +....- ...+....++...+++|.|
T Consensus 171 ------g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 171 ------GVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred ------CCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 247899999999999 332210 1123345566667777665
No 143
>PRK10115 protease 2; Provisional
Probab=82.77 E-value=45 Score=31.75 Aligned_cols=192 Identities=11% Similarity=0.013 Sum_probs=92.0
Q ss_pred eceEEEEeCCCCCee--eCCCCCCCccceeeEEE-CCEEEEEccCCCCCCCceeEEEeC--CCCcEE-eccCCcccccce
Q psy9754 66 SNSVWSFNPNNKQWT--QEPNMTYPRKIFSFVSC-LDKIYAIGGQDCKTLLSSVECYDP--VAHTWE-DVAPLKIARMGM 139 (306)
Q Consensus 66 ~~~~~~~d~~t~~W~--~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~--~~~~w~-~~~~~~~~~~~~ 139 (306)
...+|++++.|+.-+ .+-.-+........... +++..++..... ..+.++.++. .+..|. .++.-....+
T Consensus 198 ~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 273 (686)
T PRK10115 198 PYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEPFVFLPRRKDHEY-- 273 (686)
T ss_pred CCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCceEEEECCCCCEE--
Confidence 367888888877321 12111112222222223 444333433222 2355677773 334433 3322222222
Q ss_pred eeEEECCEEEEEcccCCCCCCCCCccEEEEeCC-CCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCccccc
Q psy9754 140 AVAEINDKIWIAGGYTGDKMNPVTDKVECYDPR-TNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMY 218 (306)
Q Consensus 140 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~ 218 (306)
.....++.+|+.-..... ...+...++. ...|+.+.+ ......-....... +.|++..-...
T Consensus 274 ~~~~~~~~ly~~tn~~~~-----~~~l~~~~~~~~~~~~~l~~-~~~~~~i~~~~~~~-~~l~~~~~~~g---------- 336 (686)
T PRK10115 274 SLDHYQHRFYLRSNRHGK-----NFGLYRTRVRDEQQWEELIP-PRENIMLEGFTLFT-DWLVVEERQRG---------- 336 (686)
T ss_pred EEEeCCCEEEEEEcCCCC-----CceEEEecCCCcccCeEEEC-CCCCCEEEEEEEEC-CEEEEEEEeCC----------
Confidence 233446788887654322 2456777776 578988833 22222222333334 77777643321
Q ss_pred ccceeeEEECCCCceEecccCCcccccceee-e--e-CCEEEE-EeCccCccccccceEEEeeccccceecc
Q psy9754 219 SVSDLDVFVSNEKEWKFVTELVVPRHAHSAS-V--L-SSQILI-IGGVTTVYKRTLKSVECWCFDRQAWIKG 285 (306)
Q Consensus 219 ~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~-~--~-~~~i~v-~GG~~~~~~~~~~~~~~yd~~~~~W~~~ 285 (306)
...+++++........+. ++.+....... . . ++.+++ +.+... -..++.||+++++|+.+
T Consensus 337 -~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~-----P~~~y~~d~~~~~~~~l 401 (686)
T PRK10115 337 -LTSLRQINRKTREVIGIA-FDDPAYVTWIAYNPEPETSRLRYGYSSMTT-----PDTLFELDMDTGERRVL 401 (686)
T ss_pred -EEEEEEEcCCCCceEEec-CCCCceEeeecccCCCCCceEEEEEecCCC-----CCEEEEEECCCCcEEEE
Confidence 255778887655555443 12121111111 1 1 234443 333332 26899999999888764
No 144
>KOG0315|consensus
Probab=82.44 E-value=24 Score=28.44 Aligned_cols=179 Identities=13% Similarity=0.126 Sum_probs=84.8
Q ss_pred eceEEEEeCCCCCeeeCCCCCCCccceeeEE--ECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEE
Q psy9754 66 SNSVWSFNPNNKQWTQEPNMTYPRKIFSFVS--CLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAE 143 (306)
Q Consensus 66 ~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~ 143 (306)
...+-.||..++.=..+...-..+..-.++. .+++-..-||.+. .+-++|+..-.-++.-..+.+.. .++.
T Consensus 60 ~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg-----t~kIWdlR~~~~qR~~~~~spVn--~vvl 132 (311)
T KOG0315|consen 60 NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG-----TVKIWDLRSLSCQRNYQHNSPVN--TVVL 132 (311)
T ss_pred CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc-----eEEEEeccCcccchhccCCCCcc--eEEe
Confidence 4678889998864221111112222323332 3677666677543 34556666633333222221111 2333
Q ss_pred ECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCc-ceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccce
Q psy9754 144 INDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYP-RYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSD 222 (306)
Q Consensus 144 ~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~ 222 (306)
+.+.--+|.|.. ...+.++|+.++..... .+|.. ..-.+..+..++++.+.. .+. ..
T Consensus 133 hpnQteLis~dq-------sg~irvWDl~~~~c~~~--liPe~~~~i~sl~v~~dgsml~a~-nnk------------G~ 190 (311)
T KOG0315|consen 133 HPNQTELISGDQ-------SGNIRVWDLGENSCTHE--LIPEDDTSIQSLTVMPDGSMLAAA-NNK------------GN 190 (311)
T ss_pred cCCcceEEeecC-------CCcEEEEEccCCccccc--cCCCCCcceeeEEEcCCCcEEEEe-cCC------------cc
Confidence 333322333322 46799999999987665 22222 222344444556665533 221 34
Q ss_pred eeEEECCCCce----EecccCCcccccceeeee--CCEEEEEeCccCccccccceEEEeecccc
Q psy9754 223 LDVFVSNEKEW----KFVTELVVPRHAHSASVL--SSQILIIGGVTTVYKRTLKSVECWCFDRQ 280 (306)
Q Consensus 223 ~~~y~~~~~~W----~~~~~~p~~~~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~yd~~~~ 280 (306)
++++++-+..- +++..++..-.+.--|.+ +++.++..+.+ +.+.+|+.++.
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd-------ktv~iwn~~~~ 247 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD-------KTVKIWNTDDF 247 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC-------ceEEEEecCCc
Confidence 67777655332 222222222112222223 66666666655 45666655543
No 145
>PTZ00420 coronin; Provisional
Probab=82.39 E-value=41 Score=31.08 Aligned_cols=147 Identities=10% Similarity=0.154 Sum_probs=67.8
Q ss_pred EEEEEccCCCCCCCceeEEEeCCCCcEE-eccCCcccccceeeE-EECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeE
Q psy9754 100 KIYAIGGQDCKTLLSSVECYDPVAHTWE-DVAPLKIARMGMAVA-EINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWT 177 (306)
Q Consensus 100 ~iyv~GG~~~~~~~~~~~~~d~~~~~w~-~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~ 177 (306)
.+++.+|.+ ..+.+||..+.+-. .+. .+. .-..+. ..++.+++.++.+ ..+.+||+.+.+-.
T Consensus 139 ~iLaSgS~D-----gtIrIWDl~tg~~~~~i~-~~~--~V~SlswspdG~lLat~s~D--------~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 139 YIMCSSGFD-----SFVNIWDIENEKRAFQIN-MPK--KLSSLKWNIKGNLLSGTCVG--------KHMHIIDPRKQEIA 202 (568)
T ss_pred eEEEEEeCC-----CeEEEEECCCCcEEEEEe-cCC--cEEEEEECCCCCEEEEEecC--------CEEEEEECCCCcEE
Confidence 455556654 45677888876521 111 111 111122 2356777666532 46889998876532
Q ss_pred -EcccccCCcceeEEEEEE----eCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCccccccee-eee
Q psy9754 178 -TLATKLRYPRYLATLVSV----NNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSA-SVL 251 (306)
Q Consensus 178 -~~~~~~~~~~~~~~~~~~----~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~-~~~ 251 (306)
.+ ......+.. ..+.. .++..++.+|.+... ...+.+||+.... ..+..+........+ ...
T Consensus 203 ~tl-~gH~g~~~s-~~v~~~~fs~d~~~IlTtG~d~~~---------~R~VkLWDlr~~~-~pl~~~~ld~~~~~L~p~~ 270 (568)
T PTZ00420 203 SSF-HIHDGGKNT-KNIWIDGLGGDDNYILSTGFSKNN---------MREMKLWDLKNTT-SALVTMSIDNASAPLIPHY 270 (568)
T ss_pred EEE-ecccCCcee-EEEEeeeEcCCCCEEEEEEcCCCC---------ccEEEEEECCCCC-CceEEEEecCCccceEEee
Confidence 22 111111111 11111 334555555554321 1457889886421 111111111001111 111
Q ss_pred ---CCEEEEEeCccCccccccceEEEeeccccc
Q psy9754 252 ---SSQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 252 ---~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
++.+|+.|..+ ..+.+|+...+.
T Consensus 271 D~~tg~l~lsGkGD-------~tIr~~e~~~~~ 296 (568)
T PTZ00420 271 DESTGLIYLIGKGD-------GNCRYYQHSLGS 296 (568)
T ss_pred eCCCCCEEEEEECC-------CeEEEEEccCCc
Confidence 46777777655 567888876553
No 146
>KOG0649|consensus
Probab=81.23 E-value=27 Score=28.11 Aligned_cols=149 Identities=19% Similarity=0.246 Sum_probs=80.6
Q ss_pred CeeeCCCCC-----CCccceeeEE-ECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEE--CCEEE
Q psy9754 78 QWTQEPNMT-----YPRKIFSFVS-CLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEI--NDKIW 149 (306)
Q Consensus 78 ~W~~~~~~~-----~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~--~~~iy 149 (306)
.|+...|+. .|..+..... ..+.|+..||. ..++..|.++++.++.-. .+.-+-|+++.- ++.|+
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQIL 172 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCccee
Confidence 477666553 3444443333 46789988873 557889999998765422 133344444442 33332
Q ss_pred EEcccCCCCCCCCCccEEEEeCCCCeeEEcccc-----cCCccee--EEEEEEeCCEEEEEcCCCCCCCCCcccccccce
Q psy9754 150 IAGGYTGDKMNPVTDKVECYDPRTNTWTTLATK-----LRYPRYL--ATLVSVNNEKLYIIGGASQTDATNTQKMYSVSD 222 (306)
Q Consensus 150 v~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-----~~~~~~~--~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~ 222 (306)
.|+-+ ..+.++|.+|.+-.++-.+ ...|..+ ..+...+ ..-.+.||. ..
T Consensus 173 -sG~ED--------GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~-edWlvCGgG--------------p~ 228 (325)
T KOG0649|consen 173 -SGAED--------GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN-EDWLVCGGG--------------PK 228 (325)
T ss_pred -ecCCC--------ccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc-CceEEecCC--------------Cc
Confidence 23322 4677889888886554221 1111122 2344444 556666664 34
Q ss_pred eeEEECCCCceEecccCCcccccceeeeeCCEEEEEe
Q psy9754 223 LDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIG 259 (306)
Q Consensus 223 ~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~G 259 (306)
+-.+++.+.+-+.+-++|.+ -+-+...++.+++.|
T Consensus 229 lslwhLrsse~t~vfpipa~--v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFPIPAR--VHLVDFVDDCVLIGG 263 (325)
T ss_pred eeEEeccCCCceEEEecccc--eeEeeeecceEEEec
Confidence 56677766665544444333 344444566666666
No 147
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=80.92 E-value=31 Score=28.67 Aligned_cols=126 Identities=12% Similarity=0.131 Sum_probs=69.2
Q ss_pred eceEEEEeCCCCC----eeeCCCCCCCccceeeE-----EECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccc
Q psy9754 66 SNSVWSFNPNNKQ----WTQEPNMTYPRKIFSFV-----SCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIAR 136 (306)
Q Consensus 66 ~~~~~~~d~~t~~----W~~~~~~~~~~~~~~~~-----~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~ 136 (306)
.+.+..||.++++ |++--.-+.. +.--+. -+++.|++.-+-. ...--+|..|..++.-+++.+-|..
T Consensus 77 YSHVH~yd~e~~~VrLLWkesih~~~~-WaGEVSdIlYdP~~D~LLlAR~DG--h~nLGvy~ldr~~g~~~~L~~~ps~- 152 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESIHDKTK-WAGEVSDILYDPYEDRLLLARADG--HANLGVYSLDRRTGKAEKLSSNPSL- 152 (339)
T ss_pred cceEEEEEcCCCeEEEEEecccCCccc-cccchhheeeCCCcCEEEEEecCC--cceeeeEEEcccCCceeeccCCCCc-
Confidence 5678999998876 6543322211 111111 1257888874321 1224578888889988888665543
Q ss_pred cceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCee--EEccccc------CCcceeEEEEEEeCCEEEEE
Q psy9754 137 MGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTW--TTLATKL------RYPRYLATLVSVNNEKLYII 203 (306)
Q Consensus 137 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W--~~~~~~~------~~~~~~~~~~~~~~~~iyi~ 203 (306)
-.+.+.+..+|-+ ...... ...+.++|+.+++| +...... ...+....++... ++++.|
T Consensus 153 --KG~~~~D~a~F~i--~~~~~g---~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~y-nR~faF 219 (339)
T PF09910_consen 153 --KGTLVHDYACFGI--NNFHKG---VSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAY-NRLFAF 219 (339)
T ss_pred --CceEeeeeEEEec--cccccC---CceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEe-eeEEEE
Confidence 1233334444433 222222 68899999999999 5542111 1112223455555 666665
No 148
>KOG1332|consensus
Probab=80.52 E-value=28 Score=27.98 Aligned_cols=48 Identities=23% Similarity=0.323 Sum_probs=29.7
Q ss_pred CCCceEecc--cCCcccccceeeeeCCEEEEEeCccCccccccceEEEeecc-ccceec
Q psy9754 229 NEKEWKFVT--ELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFD-RQAWIK 284 (306)
Q Consensus 229 ~~~~W~~~~--~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~-~~~W~~ 284 (306)
+...|+..- ++|.+ .++..-.+-|.++.++|.+ +.+.+|-+. .++|++
T Consensus 243 e~e~wk~tll~~f~~~-~w~vSWS~sGn~LaVs~Gd-------Nkvtlwke~~~Gkw~~ 293 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFPDV-VWRVSWSLSGNILAVSGGD-------NKVTLWKENVDGKWEE 293 (299)
T ss_pred ccCcccccccccCCcc-eEEEEEeccccEEEEecCC-------cEEEEEEeCCCCcEEE
Confidence 356777332 33333 3344445677788877766 567788776 459988
No 149
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=80.24 E-value=36 Score=28.98 Aligned_cols=75 Identities=9% Similarity=0.113 Sum_probs=39.7
Q ss_pred CCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeee-CC--EEEEEeCccCccccccceEE
Q psy9754 197 NEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVL-SS--QILIIGGVTTVYKRTLKSVE 273 (306)
Q Consensus 197 ~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~-~~--~i~v~GG~~~~~~~~~~~~~ 273 (306)
.++||++--.... ..+..+-.++|.||+++.+=...-+++.+ .-++.+- ++ .||.+-+.+ ..++
T Consensus 249 ~~rlyvLMh~g~~----gsHKdpgteVWv~D~~t~krv~Ri~l~~~--~~Si~Vsqd~~P~L~~~~~~~-------~~l~ 315 (342)
T PF06433_consen 249 SGRLYVLMHQGGE----GSHKDPGTEVWVYDLKTHKRVARIPLEHP--IDSIAVSQDDKPLLYALSAGD-------GTLD 315 (342)
T ss_dssp TTEEEEEEEE--T----T-TTS-EEEEEEEETTTTEEEEEEEEEEE--ESEEEEESSSS-EEEEEETTT-------TEEE
T ss_pred cCeEEEEecCCCC----CCccCCceEEEEEECCCCeEEEEEeCCCc--cceEEEccCCCcEEEEEcCCC-------CeEE
Confidence 5789887421110 11222457899999998764322222222 2234443 33 566665544 5799
Q ss_pred Eeeccccceec
Q psy9754 274 CWCFDRQAWIK 284 (306)
Q Consensus 274 ~yd~~~~~W~~ 284 (306)
+||..+++=..
T Consensus 316 v~D~~tGk~~~ 326 (342)
T PF06433_consen 316 VYDAATGKLVR 326 (342)
T ss_dssp EEETTT--EEE
T ss_pred EEeCcCCcEEe
Confidence 99999987543
No 150
>PLN00181 protein SPA1-RELATED; Provisional
Probab=78.57 E-value=67 Score=31.17 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=14.6
Q ss_pred CCEEEEEccCCCCCCCceeEEEeCCCC
Q psy9754 98 LDKIYAIGGQDCKTLLSSVECYDPVAH 124 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~~d~~~~ 124 (306)
++.+++.|+.+ ..+.+||..+.
T Consensus 629 ~g~~latgs~d-----g~I~iwD~~~~ 650 (793)
T PLN00181 629 SGRSLAFGSAD-----HKVYYYDLRNP 650 (793)
T ss_pred CCCEEEEEeCC-----CeEEEEECCCC
Confidence 46677777654 45778888654
No 151
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=78.48 E-value=44 Score=29.02 Aligned_cols=182 Identities=7% Similarity=-0.069 Sum_probs=73.0
Q ss_pred ceEEEEeCCCCCeeeCCCCCCCccceeeEEE--CCEEEEEccC---C----CC----------CCCceeEEEeCCCCcEE
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC--LDKIYAIGGQ---D----CK----------TLLSSVECYDPVAHTWE 127 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~---~----~~----------~~~~~~~~~d~~~~~w~ 127 (306)
..+++.|++|.+=+.+...|..-......+. ++..++.--. + .+ .....+...|+.+++.+
T Consensus 102 ~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~ 181 (386)
T PF14583_consen 102 RSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK 181 (386)
T ss_dssp TEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred CeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee
Confidence 4678889888776666665554333233322 2322211100 0 00 23445566777777665
Q ss_pred eccCCcccccceeeEE-ECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCC
Q psy9754 128 DVAPLKIARMGMAVAE-INDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGA 206 (306)
Q Consensus 128 ~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~ 206 (306)
.+-.-.. -.+|.-.. .+..+..+.--..... .-.+++..|........+...++....+|---......|+..+..
T Consensus 182 ~v~~~~~-wlgH~~fsP~dp~li~fCHEGpw~~--Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~ 258 (386)
T PF14583_consen 182 VVFEDTD-WLGHVQFSPTDPTLIMFCHEGPWDL--VDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT 258 (386)
T ss_dssp EEEEESS--EEEEEEETTEEEEEEEEE-S-TTT--SS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEE
T ss_pred EEEecCc-cccCcccCCCCCCEEEEeccCCcce--eceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeec
Confidence 5422111 11111111 1222333321111111 123889999887766666333333333444333332333333322
Q ss_pred CCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCcc
Q psy9754 207 SQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVT 262 (306)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~ 262 (306)
.. .. -.-+..||+++..=+.+.++| ...|-+...++.+++--|.+
T Consensus 259 ~~-~~--------~~~i~~~d~~t~~~~~~~~~p--~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 259 PG-GQ--------DFWIAGYDPDTGERRRLMEMP--WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT-T----------EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred CC-CC--------ceEEEeeCCCCCCceEEEeCC--ceeeeEEcCCCCEEEecCCC
Confidence 21 11 145777899877544444443 46677777799999887654
No 152
>KOG0278|consensus
Probab=78.48 E-value=34 Score=27.67 Aligned_cols=84 Identities=17% Similarity=0.113 Sum_probs=44.6
Q ss_pred ceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEE
Q psy9754 114 SSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLV 193 (306)
Q Consensus 114 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~ 193 (306)
+.+.-+|+.+-.--+--.||.....+.+ .=+..+||+||.+ ..+++||-.|..=... -.-....--|++-
T Consensus 205 ssV~Fwdaksf~~lKs~k~P~nV~SASL-~P~k~~fVaGged--------~~~~kfDy~TgeEi~~-~nkgh~gpVhcVr 274 (334)
T KOG0278|consen 205 SSVKFWDAKSFGLLKSYKMPCNVESASL-HPKKEFFVAGGED--------FKVYKFDYNTGEEIGS-YNKGHFGPVHCVR 274 (334)
T ss_pred ceeEEeccccccceeeccCccccccccc-cCCCceEEecCcc--------eEEEEEeccCCceeee-cccCCCCceEEEE
Confidence 4455566665554444455544432222 1245799999855 4678888777742221 0001111123333
Q ss_pred EEeCCEEEEEcCCC
Q psy9754 194 SVNNEKLYIIGGAS 207 (306)
Q Consensus 194 ~~~~~~iyi~GG~~ 207 (306)
...++.+|..|...
T Consensus 275 FSPdGE~yAsGSED 288 (334)
T KOG0278|consen 275 FSPDGELYASGSED 288 (334)
T ss_pred ECCCCceeeccCCC
Confidence 34479999998764
No 153
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=78.45 E-value=66 Score=31.03 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=23.8
Q ss_pred eeeEEECCEEEEEccCCCCCCCceeEEEeCCCCc--EEeccC
Q psy9754 92 FSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT--WEDVAP 131 (306)
Q Consensus 92 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--w~~~~~ 131 (306)
..-+.+++.||+... ...++.+|..+++ |+.-+.
T Consensus 188 ~TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~d~~ 223 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP------HNKVIALDAATGKEKWKFDPK 223 (764)
T ss_pred cCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCC
Confidence 445667999999854 2568888888776 776543
No 154
>KOG0286|consensus
Probab=77.79 E-value=39 Score=27.98 Aligned_cols=123 Identities=13% Similarity=0.142 Sum_probs=57.7
Q ss_pred eEEEEeCCCCCeeeCCCCCCCccceeeEEE-CCEEEEEccCCCCCCCceeEEEeCCCCcEE---eccC-CcccccceeeE
Q psy9754 68 SVWSFNPNNKQWTQEPNMTYPRKIFSFVSC-LDKIYAIGGQDCKTLLSSVECYDPVAHTWE---DVAP-LKIARMGMAVA 142 (306)
Q Consensus 68 ~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~---~~~~-~~~~~~~~~~~ 142 (306)
.+..+|.-|..=.+.-+||..- -..++.. .+.....||.++ .+-+|+..+..-+ +... ++.-.....+|
T Consensus 78 klIvWDs~TtnK~haipl~s~W-VMtCA~sPSg~~VAcGGLdN-----~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC 151 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPLPSSW-VMTCAYSPSGNFVACGGLDN-----KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCC 151 (343)
T ss_pred eEEEEEcccccceeEEecCcee-EEEEEECCCCCeEEecCcCc-----eeEEEecccccccccceeeeeecCccceeEEE
Confidence 4556665543222223333332 3333333 677777788775 3556777755322 2222 22222222333
Q ss_pred EE--CCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEe-CCEEEEEcCCC
Q psy9754 143 EI--NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVN-NEKLYIIGGAS 207 (306)
Q Consensus 143 ~~--~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~iyi~GG~~ 207 (306)
.+ +++|.--.| -..+..+|+++.+-..... --..-. .+..... +...|+.||..
T Consensus 152 ~f~dD~~ilT~SG---------D~TCalWDie~g~~~~~f~-GH~gDV-~slsl~p~~~ntFvSg~cD 208 (343)
T KOG0286|consen 152 RFLDDNHILTGSG---------DMTCALWDIETGQQTQVFH-GHTGDV-MSLSLSPSDGNTFVSGGCD 208 (343)
T ss_pred EEcCCCceEecCC---------CceEEEEEcccceEEEEec-CCcccE-EEEecCCCCCCeEEecccc
Confidence 33 344433223 2467788988887555411 111111 1111112 47788888765
No 155
>KOG0291|consensus
Probab=77.79 E-value=64 Score=30.51 Aligned_cols=151 Identities=9% Similarity=0.084 Sum_probs=77.7
Q ss_pred CEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEE
Q psy9754 99 DKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTT 178 (306)
Q Consensus 99 ~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~ 178 (306)
|.=..+|+.. +..+.+|+..+++.--...-...+.....-.-++.+.+.|+-+ +++-++|....-..-
T Consensus 319 GDWiA~g~~k----lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD--------gKVKvWn~~SgfC~v 386 (893)
T KOG0291|consen 319 GDWIAFGCSK----LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED--------GKVKVWNTQSGFCFV 386 (893)
T ss_pred CCEEEEcCCc----cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC--------CcEEEEeccCceEEE
Confidence 5555555533 3456667666665433322122222222222367777777644 467788877654332
Q ss_pred cccccCCcceeEEEEEEe-CCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeC--CEE
Q psy9754 179 LATKLRYPRYLATLVSVN-NEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLS--SQI 255 (306)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~--~~i 255 (306)
... .....++++.+. .++..+..... ..+..+|+...+=-..-..|.+. .++++..| |.|
T Consensus 387 TFt---eHts~Vt~v~f~~~g~~llssSLD-------------GtVRAwDlkRYrNfRTft~P~p~-QfscvavD~sGel 449 (893)
T KOG0291|consen 387 TFT---EHTSGVTAVQFTARGNVLLSSSLD-------------GTVRAWDLKRYRNFRTFTSPEPI-QFSCVAVDPSGEL 449 (893)
T ss_pred Eec---cCCCceEEEEEEecCCEEEEeecC-------------CeEEeeeecccceeeeecCCCce-eeeEEEEcCCCCE
Confidence 212 222333433333 35555543322 34566776544322222234443 34455554 889
Q ss_pred EEEeCccCccccccceEEEeeccccceec
Q psy9754 256 LIIGGVTTVYKRTLKSVECWCFDRQAWIK 284 (306)
Q Consensus 256 ~v~GG~~~~~~~~~~~~~~yd~~~~~W~~ 284 (306)
++.|+.+. -.+++|+.+|++=..
T Consensus 450 V~AG~~d~------F~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 450 VCAGAQDS------FEIFVWSVQTGQLLD 472 (893)
T ss_pred EEeeccce------EEEEEEEeecCeeee
Confidence 99988775 467788887776544
No 156
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=75.24 E-value=54 Score=28.34 Aligned_cols=153 Identities=14% Similarity=0.181 Sum_probs=83.8
Q ss_pred eEEECCEEEEEccCCCCCCCceeEEEeCCCCc--EEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeC
Q psy9754 94 FVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT--WEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDP 171 (306)
Q Consensus 94 ~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~ 171 (306)
.+..++++|+... ...++.+|+.+.+ |+.................+++||+-.. ...+++||.
T Consensus 64 ~~~~dg~v~~~~~------~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~---------~g~~y~ld~ 128 (370)
T COG1520 64 PADGDGTVYVGTR------DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW---------DGKLYALDA 128 (370)
T ss_pred cEeeCCeEEEecC------CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecc---------cceEEEEEC
Confidence 3666899999711 1268889999887 8654432111111222233788777543 236899998
Q ss_pred C--CCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCC--ceEecccCC-cccccc
Q psy9754 172 R--TNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEK--EWKFVTELV-VPRHAH 246 (306)
Q Consensus 172 ~--~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~--~W~~~~~~p-~~~~~~ 246 (306)
. +..|+.-... . ++. .+..+..++.+|+.... ..++.+|.++. .|+.-.+.+ ..+...
T Consensus 129 ~~G~~~W~~~~~~-~-~~~-~~~~v~~~~~v~~~s~~--------------g~~~al~~~tG~~~W~~~~~~~~~~~~~~ 191 (370)
T COG1520 129 STGTLVWSRNVGG-S-PYY-ASPPVVGDGTVYVGTDD--------------GHLYALNADTGTLKWTYETPAPLSLSIYG 191 (370)
T ss_pred CCCcEEEEEecCC-C-eEE-ecCcEEcCcEEEEecCC--------------CeEEEEEccCCcEEEEEecCCcccccccc
Confidence 5 4458776333 2 333 23344444677665311 45677777754 477333221 223333
Q ss_pred eeeeeCCEEEEEeCccCccccccceEEEeecccc--ceec
Q psy9754 247 SASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQ--AWIK 284 (306)
Q Consensus 247 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~--~W~~ 284 (306)
....-++.+|+-... . . ..++.+|++++ .|..
T Consensus 192 ~~~~~~~~vy~~~~~-~-~----~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 192 SPAIASGTVYVGSDG-Y-D----GILYALNAEDGTLKWSQ 225 (370)
T ss_pred CceeecceEEEecCC-C-c----ceEEEEEccCCcEeeee
Confidence 333446677766432 1 1 36888888654 4763
No 157
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=74.91 E-value=44 Score=27.22 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=73.3
Q ss_pred ECCEEEEEccCCCCCCCceeEEEeCC-CCcEEeccCCcc-cccceee-EE-ECCEEEEEcccCCCCCCCCCccEEEEeCC
Q psy9754 97 CLDKIYAIGGQDCKTLLSSVECYDPV-AHTWEDVAPLKI-ARMGMAV-AE-INDKIWIAGGYTGDKMNPVTDKVECYDPR 172 (306)
Q Consensus 97 ~~~~iyv~GG~~~~~~~~~~~~~d~~-~~~w~~~~~~~~-~~~~~~~-~~-~~~~iyv~GG~~~~~~~~~~~~~~~~d~~ 172 (306)
-++.+++..-............++.. ..+|+.....+. ......+ +. -+++|+++--.. .. ......+-..
T Consensus 117 ~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~----~~~~~~~S~D 191 (275)
T PF13088_consen 117 PDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GN----DDIYISRSTD 191 (275)
T ss_dssp CTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SS----TEEEEEEESS
T ss_pred cCCCEEEEEeeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CC----CcEEEEEECC
Confidence 37787777211111122333445554 556998876642 2332233 22 367888775332 11 1222333333
Q ss_pred -CCeeEEcc-cccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeE-EECC-CCceEecccCCccc----c
Q psy9754 173 -TNTWTTLA-TKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDV-FVSN-EKEWKFVTELVVPR----H 244 (306)
Q Consensus 173 -~~~W~~~~-~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~-y~~~-~~~W~~~~~~p~~~----~ 244 (306)
-.+|+... ..++.+......+...++.++++....... ..+.+ +..+ ..+|.....+.... .
T Consensus 192 ~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r----------~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~ 261 (275)
T PF13088_consen 192 GGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGR----------SNLSLYVSEDGGKTWSRPKTIDDGPNGDSG 261 (275)
T ss_dssp TTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTS----------EEEEEEEECTTCEEEEEEEEEEEEE-CCEE
T ss_pred CCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCC----------CceEEEEEeCCCCcCCccEEEeCCCCCcEE
Confidence 44698762 234555555555565678888887732111 22222 2333 67898766554433 4
Q ss_pred cceeeee-CCEEEE
Q psy9754 245 AHSASVL-SSQILI 257 (306)
Q Consensus 245 ~~~~~~~-~~~i~v 257 (306)
+..++.. +++|+|
T Consensus 262 Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 262 YPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEEETTEEEE
T ss_pred CCeeEEeCCCcCCC
Confidence 5556666 678886
No 158
>KOG4649|consensus
Probab=74.89 E-value=45 Score=27.25 Aligned_cols=91 Identities=15% Similarity=0.234 Sum_probs=56.2
Q ss_pred CccEEEEeCCCCe--eEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCC--ceEeccc
Q psy9754 163 TDKVECYDPRTNT--WTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEK--EWKFVTE 238 (306)
Q Consensus 163 ~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~--~W~~~~~ 238 (306)
...+..-|+++.+ |+.+ ...|.-.++++++ +. +++|-++ ..+|..+.+++ -|.....
T Consensus 32 s~~~~avd~~sG~~~We~i----lg~RiE~sa~vvg-df-VV~GCy~-------------g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAI----LGVRIECSAIVVG-DF-VVLGCYS-------------GGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred CceEEEecCCCCcEEeehh----hCceeeeeeEEEC-CE-EEEEEcc-------------CcEEEEEecchhheeeeeeh
Confidence 4677788888775 8877 2457766777777 55 5666654 44677777765 4775542
Q ss_pred CCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccc
Q psy9754 239 LVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 239 ~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
-.. ...+.+..++.+..+|.++ ...|+.|+.+..
T Consensus 93 ~~v--k~~a~~d~~~glIycgshd-------~~~yalD~~~~~ 126 (354)
T KOG4649|consen 93 ETV--KVRAQCDFDGGLIYCGSHD-------GNFYALDPKTYG 126 (354)
T ss_pred hhh--ccceEEcCCCceEEEecCC-------CcEEEecccccc
Confidence 211 1223344466666667666 467777877655
No 159
>PRK01742 tolB translocation protein TolB; Provisional
Probab=73.89 E-value=64 Score=28.59 Aligned_cols=161 Identities=6% Similarity=-0.042 Sum_probs=78.1
Q ss_pred ceEEEEeCCCCCeeeCCCCCCCccceeeEEE-CCE-EEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEE
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC-LDK-IYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEI 144 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~ 144 (306)
..++.+|..+++-+.+...+.. ....... +++ |++....++ ..++|.+|..++..+++......... ....-
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~--~~~~~wSPDG~~La~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~-~~wSp 301 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGH--NGAPAFSPDGSRLAFASSKDG---VLNIYVMGANGGTPSQLTSGAGNNTE-PSWSP 301 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCc--cCceeECCCCCEEEEEEecCC---cEEEEEEECCCCCeEeeccCCCCcCC-EEECC
Confidence 5688999988766555543321 1122222 554 444332222 24688889988877666442221111 11222
Q ss_pred CC-EEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCC-EEEEEcCCCCCCCCCcccccccce
Q psy9754 145 ND-KIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNE-KLYIIGGASQTDATNTQKMYSVSD 222 (306)
Q Consensus 145 ~~-~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~iyi~GG~~~~~~~~~~~~~~~~~ 222 (306)
++ +|++.....+ ...++.+|.....-+.+ .. .. .. .....++ .|++.++ ..
T Consensus 302 DG~~i~f~s~~~g------~~~I~~~~~~~~~~~~l-~~--~~-~~--~~~SpDG~~ia~~~~---------------~~ 354 (429)
T PRK01742 302 DGQSILFTSDRSG------SPQVYRMSASGGGASLV-GG--RG-YS--AQISADGKTLVMING---------------DN 354 (429)
T ss_pred CCCEEEEEECCCC------CceEEEEECCCCCeEEe-cC--CC-CC--ccCCCCCCEEEEEcC---------------CC
Confidence 44 4555432221 24677777665543333 11 11 11 1222234 4444432 23
Q ss_pred eeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCcc
Q psy9754 223 LDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVT 262 (306)
Q Consensus 223 ~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~ 262 (306)
+..+|+.+..++.+.... ........-++++++++...
T Consensus 355 i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 355 VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcC
Confidence 567898888887654221 11111223377777776554
No 160
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=73.61 E-value=63 Score=28.36 Aligned_cols=148 Identities=11% Similarity=0.101 Sum_probs=79.9
Q ss_pred ceEEEEeCCCC-----CeeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCc---EE-eccCCccccc
Q psy9754 67 NSVWSFNPNNK-----QWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT---WE-DVAPLKIARM 137 (306)
Q Consensus 67 ~~~~~~d~~t~-----~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~---w~-~~~~~~~~~~ 137 (306)
+.++.++.... .|..+.+ +.......+...++.+|+.-..+ .....+...+..+.. |. .+.+-.....
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~-~~~~~~~~v~~~~~~~yi~Tn~~--a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~ 328 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSP-REDGVEYYVDHHGDRLYILTNDD--APNGRLVAVDLADPSPAEWWTVLIPEDEDVS 328 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEE-SSSS-EEEEEEETTEEEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--SSSEE
T ss_pred CeEEEEeccccCCCcCCcEEEeC-CCCceEEEEEccCCEEEEeeCCC--CCCcEEEEecccccccccceeEEcCCCCcee
Confidence 67888888764 5666643 22223333444588999886532 233667778887665 66 4444333334
Q ss_pred ceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCC-CCeeEEcccccCCcceeEEEEEE--eCCEEEE-EcCCCCCCCCC
Q psy9754 138 GMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPR-TNTWTTLATKLRYPRYLATLVSV--NNEKLYI-IGGASQTDATN 213 (306)
Q Consensus 138 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~-~~~W~~~~~~~~~~~~~~~~~~~--~~~~iyi-~GG~~~~~~~~ 213 (306)
-..+...+++|++.-=.+. ...+.++|+. +..-..+ +++... ....... ..+.+++ +.+...
T Consensus 329 l~~~~~~~~~Lvl~~~~~~------~~~l~v~~~~~~~~~~~~--~~p~~g-~v~~~~~~~~~~~~~~~~ss~~~----- 394 (414)
T PF02897_consen 329 LEDVSLFKDYLVLSYRENG------SSRLRVYDLDDGKESREI--PLPEAG-SVSGVSGDFDSDELRFSYSSFTT----- 394 (414)
T ss_dssp EEEEEEETTEEEEEEEETT------EEEEEEEETT-TEEEEEE--ESSSSS-EEEEEES-TT-SEEEEEEEETTE-----
T ss_pred EEEEEEECCEEEEEEEECC------ccEEEEEECCCCcEEeee--cCCcce-EEeccCCCCCCCEEEEEEeCCCC-----
Confidence 4455567888877643221 5789999988 3333333 222221 1122221 1234433 344432
Q ss_pred cccccccceeeEEECCCCceEecc
Q psy9754 214 TQKMYSVSDLDVFVSNEKEWKFVT 237 (306)
Q Consensus 214 ~~~~~~~~~~~~y~~~~~~W~~~~ 237 (306)
-..++.||+.+++.+.+.
T Consensus 395 ------P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 395 ------PPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ------EEEEEEEETTTTCEEEEE
T ss_pred ------CCEEEEEECCCCCEEEEE
Confidence 257899999999877543
No 161
>KOG1898|consensus
Probab=73.56 E-value=99 Score=30.64 Aligned_cols=171 Identities=13% Similarity=0.166 Sum_probs=93.2
Q ss_pred ceEEEEeCCCCCeeeCCCCCCCccceeeEEE-----CCE-EEEEccCCCCC------CCceeEEEeCCCC--cEEeccCC
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC-----LDK-IYAIGGQDCKT------LLSSVECYDPVAH--TWEDVAPL 132 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~-----~~~-iyv~GG~~~~~------~~~~~~~~d~~~~--~w~~~~~~ 132 (306)
+.+.++|+.+++=..+-.++.-...++++.. +.. +..+|+..+.+ ....++.|+...+ +.+-+...
T Consensus 853 s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T 932 (1205)
T KOG1898|consen 853 SSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT 932 (1205)
T ss_pred ceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Confidence 3466666666554333333333333333332 223 44445443321 2234666665433 34444443
Q ss_pred cccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCC
Q psy9754 133 KIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDAT 212 (306)
Q Consensus 133 ~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~ 212 (306)
..+-.-++.+-..++++.-=| +.+++||...++--+. .....-+...+.+.....+|++ |-.. +
T Consensus 933 ~~~~~v~Ai~~f~~~~LagvG----------~~l~~YdlG~K~lLRk-~e~k~~p~~Is~iqt~~~RI~V-gD~q-e--- 996 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLAGVG----------RFLRLYDLGKKKLLRK-CELKFIPNRISSIQTYGARIVV-GDIQ-E--- 996 (1205)
T ss_pred CCCccceEEeccCCEEEEecc----------cEEEEeeCChHHHHhh-hhhccCceEEEEEeecceEEEE-eecc-c---
Confidence 444444566666775444222 6789999888764433 2222223333444555356655 3221 1
Q ss_pred CcccccccceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeC
Q psy9754 213 NTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGG 260 (306)
Q Consensus 213 ~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG 260 (306)
.-.+.+|+++.+....+..-|.+|.-.++..+|..=++.+.
T Consensus 997 -------SV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaD 1037 (1205)
T KOG1898|consen 997 -------SVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDTVAGAD 1037 (1205)
T ss_pred -------eEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCceeecc
Confidence 24578899999999999999999998888888654444443
No 162
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=73.41 E-value=49 Score=26.99 Aligned_cols=131 Identities=12% Similarity=0.200 Sum_probs=68.7
Q ss_pred eceEEEEeCCC-CCeeeCCCCC-CCc-cceeeEEE-CCEEEEEccCCCCCCCceeEEEeCC-CCcEEecc--CCcccccc
Q psy9754 66 SNSVWSFNPNN-KQWTQEPNMT-YPR-KIFSFVSC-LDKIYAIGGQDCKTLLSSVECYDPV-AHTWEDVA--PLKIARMG 138 (306)
Q Consensus 66 ~~~~~~~d~~t-~~W~~~~~~~-~~~-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~-~~~w~~~~--~~~~~~~~ 138 (306)
......++..- .+|+.....+ ... ...+++.. ++.|+++--..... ...+..... -.+|+... .++.....
T Consensus 133 ~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~~~~~~S~D~G~TWs~~~~~~~~~~~~~ 210 (275)
T PF13088_consen 133 FSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGND--DIYISRSTDGGRTWSPPQPTNLPNPNSS 210 (275)
T ss_dssp EEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSST--EEEEEEESSTTSS-EEEEEEECSSCCEE
T ss_pred cceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCCC--cEEEEEECCCCCcCCCceecccCcccCC
Confidence 34445555544 4598776553 222 23334433 67888886542111 333344444 44698754 34444444
Q ss_pred eeeEEE-CCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCC-c---ceeEEEEEEeCCEEEE
Q psy9754 139 MAVAEI-NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRY-P---RYLATLVSVNNEKLYI 202 (306)
Q Consensus 139 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~-~---~~~~~~~~~~~~~iyi 202 (306)
..+..+ +++++++........ .-.+..-.-.-.+|+.. ..+.. + -.+.+++...+++|||
T Consensus 211 ~~~~~~~~g~~~~~~~~~~~r~---~l~l~~S~D~g~tW~~~-~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 211 ISLVRLSDGRLLLVYNNPDGRS---NLSLYVSEDGGKTWSRP-KTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEECTTSEEEEEEECSSTSE---EEEEEEECTTCEEEEEE-EEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred ceEEEcCCCCEEEEEECCCCCC---ceEEEEEeCCCCcCCcc-EEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 444443 578888877322221 22344444446789876 33222 2 3567777887789986
No 163
>KOG0318|consensus
Probab=73.12 E-value=54 Score=29.50 Aligned_cols=105 Identities=15% Similarity=0.185 Sum_probs=53.2
Q ss_pred CCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceee
Q psy9754 145 NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLD 224 (306)
Q Consensus 145 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~ 224 (306)
++....+||.+ .++++|.+....-.+. .....-|...+.+.+..+--|+..|.. ...+.
T Consensus 454 ~~~~vaVGG~D--------gkvhvysl~g~~l~ee-~~~~~h~a~iT~vaySpd~~yla~~Da------------~rkvv 512 (603)
T KOG0318|consen 454 DGSEVAVGGQD--------GKVHVYSLSGDELKEE-AKLLEHRAAITDVAYSPDGAYLAAGDA------------SRKVV 512 (603)
T ss_pred CCCEEEEeccc--------ceEEEEEecCCcccce-eeeecccCCceEEEECCCCcEEEEecc------------CCcEE
Confidence 45556666654 3477887776553333 223333444445555433334443322 25677
Q ss_pred EEECCCCceEeccc--CCcccccceeeeeCCEEEEEeCccCccccccceEEEeecc
Q psy9754 225 VFVSNEKEWKFVTE--LVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFD 278 (306)
Q Consensus 225 ~y~~~~~~W~~~~~--~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~ 278 (306)
.||.++.+= +... +...|..+-+-.-+.+++..|+.+ ..+++|+.+
T Consensus 513 ~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlD-------t~Viiysv~ 560 (603)
T KOG0318|consen 513 LYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLD-------TNVIIYSVK 560 (603)
T ss_pred EEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEecccc-------ceEEEEEcc
Confidence 888765542 1111 112222222222267777777776 567777654
No 164
>PTZ00420 coronin; Provisional
Probab=72.91 E-value=80 Score=29.28 Aligned_cols=96 Identities=10% Similarity=0.128 Sum_probs=44.7
Q ss_pred ceEEEEeCCCCCeeeCCCCCCCccceeeEE-ECCEEEEEccCCCCCCCceeEEEeCCCCcEE-eccCCcccccceeeEE-
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVS-CLDKIYAIGGQDCKTLLSSVECYDPVAHTWE-DVAPLKIARMGMAVAE- 143 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~-~~~~~~~~~~~~~~~~- 143 (306)
..+..+|+.+++=. ..+..+....++.. .++.+++.++.+ ..+.+||+.+++-. .+......+.......
T Consensus 148 gtIrIWDl~tg~~~--~~i~~~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~ 220 (568)
T PTZ00420 148 SFVNIWDIENEKRA--FQINMPKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEIASSFHIHDGGKNTKNIWID 220 (568)
T ss_pred CeEEEEECCCCcEE--EEEecCCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcEEEEEecccCCceeEEEEee
Confidence 45677787765411 11111111222222 267777776643 45788999876522 1111111111111111
Q ss_pred ---ECCEEEEEcccCCCCCCCCCccEEEEeCCC
Q psy9754 144 ---INDKIWIAGGYTGDKMNPVTDKVECYDPRT 173 (306)
Q Consensus 144 ---~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~ 173 (306)
-++...+.+|.+... ...+..+|+.+
T Consensus 221 ~fs~d~~~IlTtG~d~~~----~R~VkLWDlr~ 249 (568)
T PTZ00420 221 GLGGDDNYILSTGFSKNN----MREMKLWDLKN 249 (568)
T ss_pred eEcCCCCEEEEEEcCCCC----ccEEEEEECCC
Confidence 234455555554322 24688888774
No 165
>KOG0263|consensus
Probab=72.15 E-value=55 Score=30.70 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=57.4
Q ss_pred EEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccc
Q psy9754 142 AEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVS 221 (306)
Q Consensus 142 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~ 221 (306)
..+.+.-|++.|..+ ..+..+|..+..-.++... -... -.+++....|+-...|+.. .
T Consensus 542 ~FHPNs~Y~aTGSsD-------~tVRlWDv~~G~~VRiF~G-H~~~-V~al~~Sp~Gr~LaSg~ed-------------~ 599 (707)
T KOG0263|consen 542 SFHPNSNYVATGSSD-------RTVRLWDVSTGNSVRIFTG-HKGP-VTALAFSPCGRYLASGDED-------------G 599 (707)
T ss_pred EECCcccccccCCCC-------ceEEEEEcCCCcEEEEecC-CCCc-eEEEEEcCCCceEeecccC-------------C
Confidence 344577788877432 3466777777765555211 1111 1233333335554555443 4
Q ss_pred eeeEEECCCCceEecccCCcccc-cceee-eeCCEEEEEeCccCccccccceEEEeeccc
Q psy9754 222 DLDVFVSNEKEWKFVTELVVPRH-AHSAS-VLSSQILIIGGVTTVYKRTLKSVECWCFDR 279 (306)
Q Consensus 222 ~~~~y~~~~~~W~~~~~~p~~~~-~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~ 279 (306)
.+.+||+.+.+- +.++-.... ..++. ..++.+++.||.+ ++|-+||...
T Consensus 600 ~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~D-------nsV~lWD~~~ 650 (707)
T KOG0263|consen 600 LIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGAD-------NSVRLWDLTK 650 (707)
T ss_pred cEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCC-------CeEEEEEchh
Confidence 578888876542 222211111 11111 2399999999988 5777887643
No 166
>KOG0279|consensus
Probab=72.03 E-value=54 Score=26.95 Aligned_cols=147 Identities=10% Similarity=0.083 Sum_probs=75.9
Q ss_pred CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEE-ECCEEEEEcccCCCCCCCCCccEEEEeCCCCee
Q psy9754 98 LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAE-INDKIWIAGGYTGDKMNPVTDKVECYDPRTNTW 176 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W 176 (306)
++...+.++++. .+-.+|..+.+-++.=. .+.+.-..+++ -+++-.|-|-.+ +.+-.+|+....=
T Consensus 74 dg~~alS~swD~-----~lrlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~qivSGSrD--------kTiklwnt~g~ck 139 (315)
T KOG0279|consen 74 DGNFALSASWDG-----TLRLWDLATGESTRRFV-GHTKDVLSVAFSTDNRQIVSGSRD--------KTIKLWNTLGVCK 139 (315)
T ss_pred CCceEEeccccc-----eEEEEEecCCcEEEEEE-ecCCceEEEEecCCCceeecCCCc--------ceeeeeeecccEE
Confidence 677777777663 45567888764322111 12222222222 245544444222 4566777666654
Q ss_pred EEcccccCCcceeEEEEEEe-C--CEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceee--ee
Q psy9754 177 TTLATKLRYPRYLATLVSVN-N--EKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSAS--VL 251 (306)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~-~--~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~--~~ 251 (306)
..+..... |.-.+.+.+. + +-+++-+|.. +.+-++|+.+-+-. ...+....+-..+ ..
T Consensus 140 ~t~~~~~~--~~WVscvrfsP~~~~p~Ivs~s~D-------------ktvKvWnl~~~~l~--~~~~gh~~~v~t~~vSp 202 (315)
T KOG0279|consen 140 YTIHEDSH--REWVSCVRFSPNESNPIIVSASWD-------------KTVKVWNLRNCQLR--TTFIGHSGYVNTVTVSP 202 (315)
T ss_pred EEEecCCC--cCcEEEEEEcCCCCCcEEEEccCC-------------ceEEEEccCCcchh--hccccccccEEEEEECC
Confidence 44423222 3333333333 2 3455555554 56788887654422 2222222222222 34
Q ss_pred CCEEEEEeCccCccccccceEEEeeccccce
Q psy9754 252 SSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282 (306)
Q Consensus 252 ~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W 282 (306)
||.+..-||++. .+..+|+...+-
T Consensus 203 DGslcasGgkdg-------~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 203 DGSLCASGGKDG-------EAMLWDLNEGKN 226 (315)
T ss_pred CCCEEecCCCCc-------eEEEEEccCCce
Confidence 999999999984 677778766554
No 167
>KOG0289|consensus
Probab=71.95 E-value=69 Score=28.12 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=62.7
Q ss_pred eeeEEE-CCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccc
Q psy9754 139 MAVAEI-NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKM 217 (306)
Q Consensus 139 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~ 217 (306)
++++.+ ++.||..|- . -..+-+||++... .+ ...|.-..-...+.+.++--|+.-+.+.
T Consensus 351 ts~~fHpDgLifgtgt-~-------d~~vkiwdlks~~--~~-a~Fpght~~vk~i~FsENGY~Lat~add--------- 410 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGT-P-------DGVVKIWDLKSQT--NV-AKFPGHTGPVKAISFSENGYWLATAADD--------- 410 (506)
T ss_pred EEeeEcCCceEEeccC-C-------CceEEEEEcCCcc--cc-ccCCCCCCceeEEEeccCceEEEEEecC---------
Confidence 344444 455555542 2 2467888988776 44 3333222223344444344444433322
Q ss_pred cccceeeEEECCCCceEecccCCcccc-cceeeee--CCEEEEEeCccCccccccceEEEeeccccceeccCCCCc
Q psy9754 218 YSVSDLDVFVSNEKEWKFVTELVVPRH-AHSASVL--SSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLP 290 (306)
Q Consensus 218 ~~~~~~~~y~~~~~~W~~~~~~p~~~~-~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~p 290 (306)
..+.++|+...+ .+..++.+-. ......+ -|..++++|.+ -.||.|+-.+.+|+. +..++
T Consensus 411 ---~~V~lwDLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~-------l~Vy~~~k~~k~W~~-~~~~~ 473 (506)
T KOG0289|consen 411 ---GSVKLWDLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD-------LQVYICKKKTKSWTE-IKELA 473 (506)
T ss_pred ---CeEEEEEehhhc--ccceeeccccccceeEEEcCCCCeEEeecce-------eEEEEEeccccccee-eehhh
Confidence 337888886544 2222222211 2223333 46777777766 478888889999988 44443
No 168
>KOG0640|consensus
Probab=70.56 E-value=50 Score=27.62 Aligned_cols=98 Identities=11% Similarity=0.164 Sum_probs=52.3
Q ss_pred CccEEEEeCCCCeeEEcccccCCcceeEEEEEE--e-CCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceE-eccc
Q psy9754 163 TDKVECYDPRTNTWTTLATKLRYPRYLATLVSV--N-NEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWK-FVTE 238 (306)
Q Consensus 163 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~--~-~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~-~~~~ 238 (306)
...+..||.+|-+..-- .. |......+...+ . .++||+.|... ..+-++|-.+++.. .+..
T Consensus 237 Hp~~rlYdv~T~Qcfvs-an-Pd~qht~ai~~V~Ys~t~~lYvTaSkD-------------G~IklwDGVS~rCv~t~~~ 301 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVS-AN-PDDQHTGAITQVRYSSTGSLYVTASKD-------------GAIKLWDGVSNRCVRTIGN 301 (430)
T ss_pred CCceeEEeccceeEeee-cC-cccccccceeEEEecCCccEEEEeccC-------------CcEEeeccccHHHHHHHHh
Confidence 35678999887764332 22 222111122222 2 58999998765 34677777666532 2222
Q ss_pred CCcccccceeeee-CCEEEEEeCccCccccccceEEEeeccccce
Q psy9754 239 LVVPRHAHSASVL-SSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282 (306)
Q Consensus 239 ~p~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W 282 (306)
-..+-.-+++... +++.++-.|.+ ..+.+|.+.++.-
T Consensus 302 AH~gsevcSa~Ftkn~kyiLsSG~D-------S~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 302 AHGGSEVCSAVFTKNGKYILSSGKD-------STVKLWEISTGRM 339 (430)
T ss_pred hcCCceeeeEEEccCCeEEeecCCc-------ceeeeeeecCCce
Confidence 2222222223333 66777777777 4567777766654
No 169
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=69.95 E-value=70 Score=27.33 Aligned_cols=60 Identities=20% Similarity=0.066 Sum_probs=34.4
Q ss_pred eeceEEEEeCCCCCeee---CCCCC----CCccceeeEEE-CCEEEEEccCCCCCCCceeEEEeCCCCcEEe
Q psy9754 65 VSNSVWSFNPNNKQWTQ---EPNMT----YPRKIFSFVSC-LDKIYAIGGQDCKTLLSSVECYDPVAHTWED 128 (306)
Q Consensus 65 ~~~~~~~~d~~t~~W~~---~~~~~----~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~ 128 (306)
..+-+..||..|-+=.. +|+.| .+..+....+- +..+||..= ....+|-+.|...++.-.
T Consensus 65 RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~----TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 65 RTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF----TPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE----SSSEEEEEEETTTTEEEE
T ss_pred ceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc----CCCCeEEEEECCCCceee
Confidence 57788999999875332 33321 11111122222 346777632 445888999999998754
No 170
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=69.86 E-value=82 Score=28.13 Aligned_cols=217 Identities=14% Similarity=0.109 Sum_probs=106.7
Q ss_pred cceeEEEEEEeec--CceeeecccccccccceE----EEEeCccCcCCCCcccceeeceEEEEeCCCCCeeeCCCCCCCc
Q psy9754 16 EGIKLLVIWIMDI--VTYDLSIERVSQRYDVKI----NSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPR 89 (306)
Q Consensus 16 ~~~~~~~~~~~~~--~~W~~~~~~p~~r~~~~~----i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~ 89 (306)
+++....+|.-.. ++++++-+|+...++.-+ ||.+--.+ ....++.-|..-+--++..+.. -
T Consensus 201 kGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~e----------G~GnlYSvdldGkDlrrHTnFt--d 268 (668)
T COG4946 201 KGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHE----------GVGNLYSVDLDGKDLRRHTNFT--D 268 (668)
T ss_pred cCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEeccc----------CccceEEeccCCchhhhcCCch--h
Confidence 4455555555444 467777777666555433 55443222 2455666666554444444332 1
Q ss_pred cceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccC-Ccccccc------------eeeEEE-CCEEEEEcccC
Q psy9754 90 KIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAP-LKIARMG------------MAVAEI-NDKIWIAGGYT 155 (306)
Q Consensus 90 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~-~~~~~~~------------~~~~~~-~~~iyv~GG~~ 155 (306)
+.+.-+..+++-.|| +...++|.|||.+..-+++.- +|..|.. -..+++ ++.|-++.
T Consensus 269 YY~R~~nsDGkrIvF------q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS--- 339 (668)
T COG4946 269 YYPRNANSDGKRIVF------QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS--- 339 (668)
T ss_pred ccccccCCCCcEEEE------ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe---
Confidence 122223456666666 223678999999999887642 2332211 011222 33443332
Q ss_pred CCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEe
Q psy9754 156 GDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKF 235 (306)
Q Consensus 156 ~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~ 235 (306)
.....++++..+-=.++ +....-|+. -.... ++-.++|-... ..+.+||..+.+-+.
T Consensus 340 -------RGkaFi~~~~~~~~iqv-~~~~~VrY~--r~~~~-~e~~vigt~dg------------D~l~iyd~~~~e~kr 396 (668)
T COG4946 340 -------RGKAFIMRPWDGYSIQV-GKKGGVRYR--RIQVD-PEGDVIGTNDG------------DKLGIYDKDGGEVKR 396 (668)
T ss_pred -------cCcEEEECCCCCeeEEc-CCCCceEEE--EEccC-CcceEEeccCC------------ceEEEEecCCceEEE
Confidence 34555655444433444 222223332 22222 33445543321 457888888777554
Q ss_pred cccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccceec
Q psy9754 236 VTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIK 284 (306)
Q Consensus 236 ~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~ 284 (306)
+.. +.++.....+.-+|+-.+++-.. -.+|++|++++.=+.
T Consensus 397 ~e~-~lg~I~av~vs~dGK~~vvaNdr-------~el~vididngnv~~ 437 (668)
T COG4946 397 IEK-DLGNIEAVKVSPDGKKVVVANDR-------FELWVIDIDNGNVRL 437 (668)
T ss_pred eeC-CccceEEEEEcCCCcEEEEEcCc-------eEEEEEEecCCCeeE
Confidence 442 33444433333466655554322 357777777665433
No 171
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=69.15 E-value=1.4e+02 Score=30.35 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=82.2
Q ss_pred CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCC-------cc--------cccceeeEEE--CCEEEEEcccCCCCCC
Q psy9754 98 LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPL-------KI--------ARMGMAVAEI--NDKIWIAGGYTGDKMN 160 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~-------~~--------~~~~~~~~~~--~~~iyv~GG~~~~~~~ 160 (306)
++.|||..... ..+.++|+.++.-+.+..- .. -..-..+++. ++.|||....
T Consensus 635 gn~LYVaDt~n-----~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~------ 703 (1057)
T PLN02919 635 KNLLYVADTEN-----HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG------ 703 (1057)
T ss_pred CCEEEEEeCCC-----ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC------
Confidence 45788875422 4577788887765554211 00 0011233333 5788887431
Q ss_pred CCCccEEEEeCCCCeeEEccccc---------CC---cceeEEEEEEeC-CEEEEEcCCCCCCCCCcccccccceeeEEE
Q psy9754 161 PVTDKVECYDPRTNTWTTLATKL---------RY---PRYLATLVSVNN-EKLYIIGGASQTDATNTQKMYSVSDLDVFV 227 (306)
Q Consensus 161 ~~~~~~~~~d~~~~~W~~~~~~~---------~~---~~~~~~~~~~~~-~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~ 227 (306)
.+.+++||+.+.....+.... .. ...-.+++...+ +.||+....+ +.+.++|
T Consensus 704 --~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-------------~~Irv~D 768 (1057)
T PLN02919 704 --QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-------------SSIRALD 768 (1057)
T ss_pred --CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-------------CeEEEEE
Confidence 367888988777654432110 00 001112333333 4599886543 6788899
Q ss_pred CCCCceEecc--c--CCc--------------cc--ccceeeee-CCEEEEEeCccCccccccceEEEeeccccceec
Q psy9754 228 SNEKEWKFVT--E--LVV--------------PR--HAHSASVL-SSQILIIGGVTTVYKRTLKSVECWCFDRQAWIK 284 (306)
Q Consensus 228 ~~~~~W~~~~--~--~p~--------------~~--~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~ 284 (306)
++++....+. . .+. .. .-.+++.- ++.|||....+ .++.+||++++....
T Consensus 769 ~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-------~rIrviD~~tg~v~t 839 (1057)
T PLN02919 769 LKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-------HKIKKLDPATKRVTT 839 (1057)
T ss_pred CCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-------CEEEEEECCCCeEEE
Confidence 8766533211 0 000 00 01133332 67899987655 679999998877654
No 172
>KOG0299|consensus
Probab=68.91 E-value=83 Score=27.79 Aligned_cols=147 Identities=15% Similarity=0.204 Sum_probs=73.2
Q ss_pred EEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccc-eeeEEEC--CEEEEEcccCCCCCCCCCccEEEEeC
Q psy9754 95 VSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMG-MAVAEIN--DKIWIAGGYTGDKMNPVTDKVECYDP 171 (306)
Q Consensus 95 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~-~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~d~ 171 (306)
+..+++.++.||.+. .+.++++.+..-.+. +..-|.. ..++... +.+|..+- -..+-.++.
T Consensus 210 vS~Dgkylatgg~d~-----~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~---------Drsvkvw~~ 273 (479)
T KOG0299|consen 210 VSSDGKYLATGGRDR-----HVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASA---------DRSVKVWSI 273 (479)
T ss_pred EcCCCcEEEecCCCc-----eEEEecCcccchhhc--ccccccceeeeeeecCccceeeeec---------CCceEEEeh
Confidence 344889999999764 466777776653222 2222211 1223332 45676542 234556665
Q ss_pred CCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeee
Q psy9754 172 RTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVL 251 (306)
Q Consensus 172 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~ 251 (306)
+..+..+.--..+..-. +.-+....+...+||.. .++..|.+...+ +.+ --+..-..-+++++
T Consensus 274 ~~~s~vetlyGHqd~v~--~IdaL~reR~vtVGgrD-------------rT~rlwKi~ees-qli-frg~~~sidcv~~I 336 (479)
T KOG0299|consen 274 DQLSYVETLYGHQDGVL--GIDALSRERCVTVGGRD-------------RTVRLWKIPEES-QLI-FRGGEGSIDCVAFI 336 (479)
T ss_pred hHhHHHHHHhCCcccee--eechhcccceEEecccc-------------ceeEEEeccccc-eee-eeCCCCCeeeEEEe
Confidence 55543222011111111 22222346788888875 445566553222 111 11112233456667
Q ss_pred CCEEEEEeCccCccccccceEEEeeccccc
Q psy9754 252 SSQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 252 ~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
++.=|+.|+-++ .+..|+..+.+
T Consensus 337 n~~HfvsGSdnG-------~IaLWs~~KKk 359 (479)
T KOG0299|consen 337 NDEHFVSGSDNG-------SIALWSLLKKK 359 (479)
T ss_pred cccceeeccCCc-------eEEEeeecccC
Confidence 888888887763 56666654433
No 173
>KOG2111|consensus
Probab=68.18 E-value=72 Score=26.79 Aligned_cols=137 Identities=11% Similarity=0.105 Sum_probs=63.7
Q ss_pred CCEEEEEccCCCC-CCCceeEEEeCCCCcEEeccCCc------ccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEe
Q psy9754 98 LDKIYAIGGQDCK-TLLSSVECYDPVAHTWEDVAPLK------IARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYD 170 (306)
Q Consensus 98 ~~~iyv~GG~~~~-~~~~~~~~~d~~~~~w~~~~~~~------~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d 170 (306)
-+.+-++||.... -..+.+.++|-..+.-..-..+. .-|..+-+++..++|||+-=.++ ...+..+|
T Consensus 58 ~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n------~k~l~~~e 131 (346)
T KOG2111|consen 58 SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDN------PKLLHVIE 131 (346)
T ss_pred hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCC------hhheeeee
Confidence 3566666766544 55688888885444321111111 12344455556666666532111 12222222
Q ss_pred CCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeee
Q psy9754 171 PRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASV 250 (306)
Q Consensus 171 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~ 250 (306)
....|..-++++...+..++++-|... ..+.+.|+...+=..-...+.-...-+++.
T Consensus 132 -----------t~~NPkGlC~~~~~~~k~~LafPg~k~------------GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~ 188 (346)
T KOG2111|consen 132 -----------TRSNPKGLCSLCPTSNKSLLAFPGFKT------------GQVQIVDLASTKPNAPSIINAHDSDIACVA 188 (346)
T ss_pred -----------cccCCCceEeecCCCCceEEEcCCCcc------------ceEEEEEhhhcCcCCceEEEcccCceeEEE
Confidence 112233334444444466777766542 456777775444310011111222233444
Q ss_pred e--CCEEEEEeCccC
Q psy9754 251 L--SSQILIIGGVTT 263 (306)
Q Consensus 251 ~--~~~i~v~GG~~~ 263 (306)
+ +|.++..+...+
T Consensus 189 Ln~~Gt~vATaStkG 203 (346)
T KOG2111|consen 189 LNLQGTLVATASTKG 203 (346)
T ss_pred EcCCccEEEEeccCc
Confidence 3 666666665443
No 174
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=67.91 E-value=58 Score=26.92 Aligned_cols=99 Identities=12% Similarity=0.260 Sum_probs=61.1
Q ss_pred eeeEEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeC
Q psy9754 92 FSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDP 171 (306)
Q Consensus 92 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~ 171 (306)
.+.+....+.+++|+.. .+..=|-..++|++.-........+.+.+.+.+=++.|- -..+..-+-
T Consensus 48 ia~~~~g~~gwlVg~rg------tiletdd~g~tw~qal~~~gr~~f~sv~f~~~egw~vGe---------~sqll~T~D 112 (339)
T COG4447 48 IAFTESGSHGWLVGGRG------TILETDDGGITWAQALDFLGRHAFHSVSFLGMEGWIVGE---------PSQLLHTTD 112 (339)
T ss_pred eeEeecCcceEEEcCcc------eEEEecCCcccchhhhchhhhhheeeeeeecccccccCC---------cceEEEecC
Confidence 34444577999999854 344556778889887665544444455555555555542 244555555
Q ss_pred CCCeeEEcccccCCcceeEEEEEEeCCEEEEEcC
Q psy9754 172 RTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGG 205 (306)
Q Consensus 172 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG 205 (306)
.-.+|.+++.....+-.-.+....++++-+++|-
T Consensus 113 gGqsWARi~~~e~~eg~~~sI~f~d~q~g~m~gd 146 (339)
T COG4447 113 GGQSWARIPLSEKLEGFPDSITFLDDQRGEMLGD 146 (339)
T ss_pred CCcchhhchhhcCCCCCcceeEEecchhhhhhcc
Confidence 6778999854444444445666666667777765
No 175
>KOG0265|consensus
Probab=67.68 E-value=71 Score=26.59 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=35.8
Q ss_pred CCEEEEEccCCCCCCCceeEE-EeCCCCcEEeccCCcccccceeeEE----ECCEEEEEcccCCCCCCCCCccEEEEeCC
Q psy9754 98 LDKIYAIGGQDCKTLLSSVEC-YDPVAHTWEDVAPLKIARMGMAVAE----INDKIWIAGGYTGDKMNPVTDKVECYDPR 172 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~-~d~~~~~w~~~~~~~~~~~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~~~d~~ 172 (306)
++..++-||.+..-. +|. |.-..|-|... .+.++.+-+ .+..|+-+|- -..+..+|.+
T Consensus 58 ~gs~~aSgG~Dr~I~---LWnv~gdceN~~~lk-----gHsgAVM~l~~~~d~s~i~S~gt---------Dk~v~~wD~~ 120 (338)
T KOG0265|consen 58 DGSCFASGGSDRAIV---LWNVYGDCENFWVLK-----GHSGAVMELHGMRDGSHILSCGT---------DKTVRGWDAE 120 (338)
T ss_pred CCCeEeecCCcceEE---EEeccccccceeeec-----cccceeEeeeeccCCCEEEEecC---------CceEEEEecc
Confidence 678888888775321 222 44556666543 222222222 1345666552 2578899999
Q ss_pred CCeeEE
Q psy9754 173 TNTWTT 178 (306)
Q Consensus 173 ~~~W~~ 178 (306)
+.+-..
T Consensus 121 tG~~~r 126 (338)
T KOG0265|consen 121 TGKRIR 126 (338)
T ss_pred cceeee
Confidence 887544
No 176
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=67.32 E-value=82 Score=27.16 Aligned_cols=55 Identities=11% Similarity=0.006 Sum_probs=36.9
Q ss_pred cceeeEEECCCCceEecccCCcccccceeeee-C-C-EEEEEeCccCccccccceEEEeecccccee
Q psy9754 220 VSDLDVFVSNEKEWKFVTELVVPRHAHSASVL-S-S-QILIIGGVTTVYKRTLKSVECWCFDRQAWI 283 (306)
Q Consensus 220 ~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~-~-~-~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~ 283 (306)
.+.++++|.. +++.+..++.++.-++++.- | . .+|+..+.+ +++.++|.++.+=.
T Consensus 278 ~~~V~ViD~~--t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s-------~~VsViD~~t~k~i 335 (352)
T TIGR02658 278 SRFLFVVDAK--TGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD-------KTLYIFDAETGKEL 335 (352)
T ss_pred CCEEEEEECC--CCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC-------CcEEEEECcCCeEE
Confidence 3678999875 55666666666655566654 3 4 567676555 57899999887653
No 177
>PRK02888 nitrous-oxide reductase; Validated
Probab=67.11 E-value=1.1e+02 Score=28.60 Aligned_cols=54 Identities=13% Similarity=0.181 Sum_probs=36.5
Q ss_pred ceeeEEECCC---CceEecccCCcccccceeeee-CC-EEEEEeCccCccccccceEEEeeccccc
Q psy9754 221 SDLDVFVSNE---KEWKFVTELVVPRHAHSASVL-SS-QILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 221 ~~~~~y~~~~---~~W~~~~~~p~~~~~~~~~~~-~~-~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
+.+-+.|..+ ..+..+..+|.++.-|++..- |+ ++|+.|+.+ +++-++|.++.+
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS-------~tVSVIDv~k~k 354 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS-------PTVTVIDVRKLD 354 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC-------CcEEEEEChhhh
Confidence 3466777665 135666777888888888876 55 566665555 678888887644
No 178
>KOG1332|consensus
Probab=65.85 E-value=70 Score=25.86 Aligned_cols=103 Identities=17% Similarity=0.330 Sum_probs=53.9
Q ss_pred EEEEEccCCCCCCCceeEEEeCCCCcEEec----------------cCCcccccceeeEEECCEEEEEcccCCCCCCCCC
Q psy9754 100 KIYAIGGQDCKTLLSSVECYDPVAHTWEDV----------------APLKIARMGMAVAEINDKIWIAGGYTGDKMNPVT 163 (306)
Q Consensus 100 ~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~----------------~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 163 (306)
+-++-||.++ +-.+|.||.. +|..- |....++...+.+..+++++|..
T Consensus 176 krlvSgGcDn---~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt----------- 239 (299)
T KOG1332|consen 176 KRLVSGGCDN---LVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT----------- 239 (299)
T ss_pred ceeeccCCcc---ceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE-----------
Confidence 5678889876 3445555543 55322 22334555555555666655542
Q ss_pred ccEEEEeCCCCeeEEcc-cccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECC-CCceEeccc
Q psy9754 164 DKVECYDPRTNTWTTLA-TKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSN-EKEWKFVTE 238 (306)
Q Consensus 164 ~~~~~~d~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~-~~~W~~~~~ 238 (306)
-+.+...|+.-. .+.|.+.+..+- .+. +.++.++|.+ +.+.++-.+ +++|+.+..
T Consensus 240 -----~~~e~e~wk~tll~~f~~~~w~vSW-S~s-Gn~LaVs~Gd-------------Nkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 240 -----KDEEYEPWKKTLLEEFPDVVWRVSW-SLS-GNILAVSGGD-------------NKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred -----ecCccCcccccccccCCcceEEEEE-ecc-ccEEEEecCC-------------cEEEEEEeCCCCcEEEccc
Confidence 233456675531 334444444443 333 4555555443 445555444 458998764
No 179
>KOG0318|consensus
Probab=64.84 E-value=1.1e+02 Score=27.70 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=42.7
Q ss_pred EEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeee--CCEEEEEeCccCcccccc
Q psy9754 192 LVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVL--SSQILIIGGVTTVYKRTL 269 (306)
Q Consensus 192 ~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~--~~~i~v~GG~~~~~~~~~ 269 (306)
.++..++.-+++||.. ..+++|.+..++-...+.+...|...+.+.. ++..++.|...
T Consensus 449 vAv~~~~~~vaVGG~D-------------gkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~------- 508 (603)
T KOG0318|consen 449 VAVSPDGSEVAVGGQD-------------GKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS------- 508 (603)
T ss_pred EEEcCCCCEEEEeccc-------------ceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC-------
Confidence 3344468889999986 4589998887765544444444444444444 56666666544
Q ss_pred ceEEEeecccc
Q psy9754 270 KSVECWCFDRQ 280 (306)
Q Consensus 270 ~~~~~yd~~~~ 280 (306)
..+.+||.+++
T Consensus 509 rkvv~yd~~s~ 519 (603)
T KOG0318|consen 509 RKVVLYDVASR 519 (603)
T ss_pred CcEEEEEcccC
Confidence 56667776543
No 180
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=64.80 E-value=88 Score=26.63 Aligned_cols=194 Identities=13% Similarity=0.111 Sum_probs=92.6
Q ss_pred EEEeCccCcCCCCcccceeeceEEEEeCCCCCeeeCCCCCCCccceeeEEE--CC-EEEEEccCCCCCCCceeEEEeCCC
Q psy9754 47 NSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC--LD-KIYAIGGQDCKTLLSSVECYDPVA 123 (306)
Q Consensus 47 i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~ 123 (306)
||++..-... ..-..|.+|+.+++-+.+...+.+....+-+.+ ++ .+|+. -+. ...+-+|-...
T Consensus 54 LY~v~~~~~~--------ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~A-nY~----~g~v~v~p~~~ 120 (346)
T COG2706 54 LYVVNEPGEE--------GGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVA-NYH----SGSVSVYPLQA 120 (346)
T ss_pred EEEEEecCCc--------CcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEE-Ecc----CceEEEEEccc
Confidence 7777543221 345678889988888777554444433333333 33 33333 221 13444444433
Q ss_pred C-c-EE------eccCCcccc-----cceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeE
Q psy9754 124 H-T-WE------DVAPLKIAR-----MGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLA 190 (306)
Q Consensus 124 ~-~-w~------~~~~~~~~~-----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~ 190 (306)
+ . |. ...+-|.+| .+++-..-++++.+.-... .+++..|+.+.+.-+......-.+..+.
T Consensus 121 dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-------~Dri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 121 DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-------TDRIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred CCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-------CceEEEEEcccCccccccccccCCCCCc
Confidence 1 1 11 112223333 2222223345433332111 5789999988777655421111222222
Q ss_pred -EEEEEeCC-EEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecc---cCCcc---cccceeeee--CCEEEEEeC
Q psy9754 191 -TLVSVNNE-KLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVT---ELVVP---RHAHSASVL--SSQILIIGG 260 (306)
Q Consensus 191 -~~~~~~~~-~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~---~~p~~---~~~~~~~~~--~~~i~v~GG 260 (306)
.++...++ ..|++.--+. .-.++.||....+.+.+. .+|.. ....++..+ +|+.+.+.-
T Consensus 194 RHi~FHpn~k~aY~v~EL~s-----------tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNS-----------TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN 262 (346)
T ss_pred ceEEEcCCCcEEEEEeccCC-----------EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec
Confidence 24444444 4688765442 245677777667777554 44432 223333333 665554432
Q ss_pred ccCccccccceEEEeec
Q psy9754 261 VTTVYKRTLKSVECWCF 277 (306)
Q Consensus 261 ~~~~~~~~~~~~~~yd~ 277 (306)
+.. +.+.+|.+
T Consensus 263 Rg~------dsI~~f~V 273 (346)
T COG2706 263 RGH------DSIAVFSV 273 (346)
T ss_pred CCC------CeEEEEEE
Confidence 222 45566644
No 181
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=62.59 E-value=17 Score=19.56 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=15.4
Q ss_pred ceeeeeCCEEEEEeCccCccccccceEEEeeccc
Q psy9754 246 HSASVLSSQILIIGGVTTVYKRTLKSVECWCFDR 279 (306)
Q Consensus 246 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~ 279 (306)
.+.++.++.+|+.+. + ..++++|+++
T Consensus 15 ~~~~v~~g~vyv~~~-d-------g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTG-D-------GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-T-T-------SEEEEEETT-
T ss_pred cCCEEECCEEEEEcC-C-------CEEEEEeCCC
Confidence 344556777777765 3 4788888764
No 182
>KOG0649|consensus
Probab=62.32 E-value=83 Score=25.46 Aligned_cols=120 Identities=18% Similarity=0.302 Sum_probs=60.5
Q ss_pred eceEEEEeCCCCCeeeCCCCCCCccceeeEEE--CCEEEEEccCCCCCCCceeEEEeCCCCcEEe-ccCC-----ccccc
Q psy9754 66 SNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC--LDKIYAIGGQDCKTLLSSVECYDPVAHTWED-VAPL-----KIARM 137 (306)
Q Consensus 66 ~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~-~~~~-----~~~~~ 137 (306)
...++..|.++++.+..-. -..-+-|+++.- ++.|+ -|+.+ ..+-++|..+.+-.+ +.+. ..+.-
T Consensus 135 D~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qil-sG~ED-----GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQIL-SGAED-----GTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred CeEEEEEEecCCEEEEEEc-CCcceeeeeeecccCccee-ecCCC-----ccEEEEeccccceeEEeccccChhhcCccc
Confidence 4678899999998765432 122344555543 33443 23333 345567888877543 3221 11112
Q ss_pred --ceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCC
Q psy9754 138 --GMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGA 206 (306)
Q Consensus 138 --~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~ 206 (306)
.-.+...+..-.|+||- ..+..+++...+-+.+ .+.| ++. ..+.+.++.+ +++|.
T Consensus 208 g~wigala~~edWlvCGgG---------p~lslwhLrsse~t~v-fpip-a~v--~~v~F~~d~v-l~~G~ 264 (325)
T KOG0649|consen 208 GKWIGALAVNEDWLVCGGG---------PKLSLWHLRSSESTCV-FPIP-ARV--HLVDFVDDCV-LIGGE 264 (325)
T ss_pred CceeEEEeccCceEEecCC---------CceeEEeccCCCceEE-Eecc-cce--eEeeeecceE-EEecc
Confidence 22444456667777762 3445666555554444 3332 222 3344442444 55553
No 183
>KOG0278|consensus
Probab=61.71 E-value=86 Score=25.47 Aligned_cols=93 Identities=17% Similarity=0.243 Sum_probs=50.4
Q ss_pred ccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCccc
Q psy9754 164 DKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPR 243 (306)
Q Consensus 164 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~ 243 (306)
..+..+|..+.+-..- -..+.+.. ++-+..+++|+.+.-. ..+-.+|+++ +..+.....|-
T Consensus 165 ~tVRLWD~rTgt~v~s-L~~~s~Vt--SlEvs~dG~ilTia~g--------------ssV~Fwdaks--f~~lKs~k~P~ 225 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQS-LEFNSPVT--SLEVSQDGRILTIAYG--------------SSVKFWDAKS--FGLLKSYKMPC 225 (334)
T ss_pred CceEEEEeccCcEEEE-EecCCCCc--ceeeccCCCEEEEecC--------------ceeEEecccc--ccceeeccCcc
Confidence 5677888888765433 23333332 3444555777665321 3455566543 33333322232
Q ss_pred ccceee-eeCCEEEEEeCccCccccccceEEEeeccccce
Q psy9754 244 HAHSAS-VLSSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282 (306)
Q Consensus 244 ~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W 282 (306)
.-.++. .-+..+||.||.+ -.+++||..++.=
T Consensus 226 nV~SASL~P~k~~fVaGged-------~~~~kfDy~TgeE 258 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGED-------FKVYKFDYNTGEE 258 (334)
T ss_pred ccccccccCCCceEEecCcc-------eEEEEEeccCCce
Confidence 212222 2266899999988 4678888777653
No 184
>KOG0266|consensus
Probab=60.41 E-value=1.3e+02 Score=27.02 Aligned_cols=105 Identities=13% Similarity=0.144 Sum_probs=57.3
Q ss_pred CCEEEEEccCCCCCCCceeEEEeCCCC-c-EEeccCCcccccceeeEEE-CCEEEEEcccCCCCCCCCCccEEEEeCCCC
Q psy9754 98 LDKIYAIGGQDCKTLLSSVECYDPVAH-T-WEDVAPLKIARMGMAVAEI-NDKIWIAGGYTGDKMNPVTDKVECYDPRTN 174 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~~d~~~~-~-w~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~ 174 (306)
+++ |++.|... ..+.++|.... . -+.+....... .+++.. .+.+++.|+.+ ..+.++|..+.
T Consensus 214 d~~-~l~s~s~D----~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D--------~tvriWd~~~~ 278 (456)
T KOG0266|consen 214 DGS-YLLSGSDD----KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD--------GTVRIWDVRTG 278 (456)
T ss_pred CCc-EEEEecCC----ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC--------CcEEEEeccCC
Confidence 444 55555443 55777888444 2 23334333333 333332 45677777654 56889999886
Q ss_pred eeEEcccccCCcceeEEEEEE-eCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCce
Q psy9754 175 TWTTLATKLRYPRYLATLVSV-NNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEW 233 (306)
Q Consensus 175 ~W~~~~~~~~~~~~~~~~~~~-~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W 233 (306)
+-.+. -...... .+.+.+ .++.+++.+... ..+.+||..+..-
T Consensus 279 ~~~~~-l~~hs~~--is~~~f~~d~~~l~s~s~d-------------~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 279 ECVRK-LKGHSDG--ISGLAFSPDGNLLVSASYD-------------GTIRVWDLETGSK 322 (456)
T ss_pred eEEEe-eeccCCc--eEEEEECCCCCEEEEcCCC-------------ccEEEEECCCCce
Confidence 55444 1111121 222333 357777777543 5688999887773
No 185
>KOG2048|consensus
Probab=59.95 E-value=1.5e+02 Score=27.68 Aligned_cols=238 Identities=13% Similarity=0.082 Sum_probs=104.7
Q ss_pred EEEEeec-Cceeeeccccc--ccccceEEEEeCccCcCCCCcccceeeceEEEEeCCCCCeeeCCCCCCCccceeeEEE-
Q psy9754 22 VIWIMDI-VTYDLSIERVS--QRYDVKINSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC- 97 (306)
Q Consensus 22 ~~~~~~~-~~W~~~~~~p~--~r~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~- 97 (306)
.+..|++ +.|-..+.++. -|.--+++++=||+-.... ....+-.+|+.+.+=...-+ +..-.-.+++..
T Consensus 48 ~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g------~sg~i~EwDl~~lk~~~~~d-~~gg~IWsiai~p 120 (691)
T KOG2048|consen 48 NIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSG------LSGSITEWDLHTLKQKYNID-SNGGAIWSIAINP 120 (691)
T ss_pred cEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeec------CCceEEEEecccCceeEEec-CCCcceeEEEeCC
Confidence 4778888 78855444443 3443344444444432221 24456666666543221111 122222333333
Q ss_pred CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEECCEEE-EEcccCCCCCCCCCccEEEEeCCCCee
Q psy9754 98 LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIW-IAGGYTGDKMNPVTDKVECYDPRTNTW 176 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iy-v~GG~~~~~~~~~~~~~~~~d~~~~~W 176 (306)
.+.+..+| +++ ..++.++...+.-+-...++......-....+.... ++||..+ ..+.++|.++.+=
T Consensus 121 ~~~~l~Ig-cdd----Gvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D-------g~Iriwd~~~~~t 188 (691)
T KOG2048|consen 121 ENTILAIG-CDD----GVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID-------GVIRIWDVKSGQT 188 (691)
T ss_pred ccceEEee-cCC----ceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC-------ceEEEEEcCCCce
Confidence 22344443 121 133334444444444444544433334444555555 7777553 2367777776653
Q ss_pred EEcccccCC---cc----eeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceee
Q psy9754 177 TTLATKLRY---PR----YLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSAS 249 (306)
Q Consensus 177 ~~~~~~~~~---~~----~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~ 249 (306)
-.+ -.+.. .+ .-=++..+. +...+.|-.. ..+..+|....+-.+--.....- -.+++
T Consensus 189 ~~~-~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~-------------G~V~FWd~~~gTLiqS~~~h~ad-Vl~La 252 (691)
T KOG2048|consen 189 LHI-ITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSA-------------GTVTFWDSIFGTLIQSHSCHDAD-VLALA 252 (691)
T ss_pred EEE-eeecccccccCCceEEEEEEEee-cCcEEEecCC-------------ceEEEEcccCcchhhhhhhhhcc-eeEEE
Confidence 332 11111 11 112334444 3333443322 45677777666532111111111 12233
Q ss_pred ee-CCEEEEEeCccCccccccceEEEeeccc--cceeccCCCCcccccceeeEEe
Q psy9754 250 VL-SSQILIIGGVTTVYKRTLKSVECWCFDR--QAWIKGVSGLPATILGHSSVAL 301 (306)
Q Consensus 250 ~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~--~~W~~~~~~~p~~r~~~~~~~~ 301 (306)
.- ++..++.+|.+ ..+..|...+ ++|..-....-.++.--+.++.
T Consensus 253 v~~~~d~vfsaGvd-------~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~ 300 (691)
T KOG2048|consen 253 VADNEDRVFSAGVD-------PKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVI 300 (691)
T ss_pred EcCCCCeEEEccCC-------CceEEEEecCCccceeeeccccCCcccceeeeee
Confidence 33 44566667777 3556665543 3586633333333333333333
No 186
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=59.79 E-value=80 Score=24.43 Aligned_cols=75 Identities=12% Similarity=0.169 Sum_probs=41.3
Q ss_pred ceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccceecc--------CCCCccc
Q psy9754 221 SDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKG--------VSGLPAT 292 (306)
Q Consensus 221 ~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~--------~~~~p~~ 292 (306)
..+..||++ .+.+..++......-.-..+|+.++++|..... .++.+||.++.+-..- +.=.|.+
T Consensus 83 ~~v~lyd~~---~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~----G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdG 155 (194)
T PF08662_consen 83 AKVTLYDVK---GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLN----GDLEFWDVRKKKKISTFEHSDATDVEWSPDG 155 (194)
T ss_pred cccEEEcCc---ccEeEeecCCCceEEEECCCCCEEEEEEccCCC----cEEEEEECCCCEEeeccccCcEEEEEEcCCC
Confidence 367888885 334444433222222222388888888865321 4688898875444221 1114666
Q ss_pred ccceeeEEec
Q psy9754 293 ILGHSSVALP 302 (306)
Q Consensus 293 r~~~~~~~~~ 302 (306)
|+-.+++..|
T Consensus 156 r~~~ta~t~~ 165 (194)
T PF08662_consen 156 RYLATATTSP 165 (194)
T ss_pred CEEEEEEecc
Confidence 7766666553
No 187
>KOG4378|consensus
Probab=58.66 E-value=1.4e+02 Score=26.92 Aligned_cols=90 Identities=10% Similarity=0.086 Sum_probs=45.3
Q ss_pred ccEEEEeCCCCe----eEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccC
Q psy9754 164 DKVECYDPRTNT----WTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTEL 239 (306)
Q Consensus 164 ~~~~~~d~~~~~----W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~ 239 (306)
..+..||.+..+ |.+. ... |..+.+....+ ..|++.=|.. ..++.||.....-...-
T Consensus 187 G~VtlwDv~g~sp~~~~~~~-HsA--P~~gicfspsn-e~l~vsVG~D-------------kki~~yD~~s~~s~~~l-- 247 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHASEA-HSA--PCRGICFSPSN-EALLVSVGYD-------------KKINIYDIRSQASTDRL-- 247 (673)
T ss_pred CeEEEEeccCCCcccchhhh-ccC--CcCcceecCCc-cceEEEeccc-------------ceEEEeeccccccccee--
Confidence 345566655443 6555 222 22333333334 5666655664 67899998754433211
Q ss_pred Ccccccceeeee-CCEEEEEeCccCccccccceEEEeeccc
Q psy9754 240 VVPRHAHSASVL-SSQILIIGGVTTVYKRTLKSVECWCFDR 279 (306)
Q Consensus 240 p~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~ 279 (306)
....-..+.+.. +|.++++|-.. .+++.||+..
T Consensus 248 ~y~~Plstvaf~~~G~~L~aG~s~-------G~~i~YD~R~ 281 (673)
T KOG4378|consen 248 TYSHPLSTVAFSECGTYLCAGNSK-------GELIAYDMRS 281 (673)
T ss_pred eecCCcceeeecCCceEEEeecCC-------ceEEEEeccc
Confidence 111112344444 45555555444 4677787754
No 188
>KOG1897|consensus
Probab=58.42 E-value=2e+02 Score=28.53 Aligned_cols=174 Identities=14% Similarity=0.164 Sum_probs=101.3
Q ss_pred eeceEEEEeCCCCCeeeCCCCCCCc--cceeeEEE----C-CEEEEEccCCC----C-CCCceeEEEeCCC-CcEEeccC
Q psy9754 65 VSNSVWSFNPNNKQWTQEPNMTYPR--KIFSFVSC----L-DKIYAIGGQDC----K-TLLSSVECYDPVA-HTWEDVAP 131 (306)
Q Consensus 65 ~~~~~~~~d~~t~~W~~~~~~~~~~--~~~~~~~~----~-~~iyv~GG~~~----~-~~~~~~~~~d~~~-~~w~~~~~ 131 (306)
-...+..||..| .+.+...+..+ ...+++++ + +..|++|-... . .....+.+|.... ++-+.+..
T Consensus 748 ~~s~l~vlD~nT--f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e 825 (1096)
T KOG1897|consen 748 EVSFLRVLDQNT--FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE 825 (1096)
T ss_pred eEEEEEEecCCc--eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee
Confidence 566778888765 45554443333 33333322 2 57888874211 1 2234455555555 67777777
Q ss_pred CcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCC
Q psy9754 132 LKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDA 211 (306)
Q Consensus 132 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~ 211 (306)
+-..-.-.+.+.+++++..-= ...+..|+..+.+=-.+......+-.-...-+. .+.|++..-..
T Consensus 826 ~~v~Gav~aL~~fngkllA~I----------n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~-gdeI~VgDlm~---- 890 (1096)
T KOG1897|consen 826 TVVKGAVYALVEFNGKLLAGI----------NQSVRLYEWTTERELRIECNISNPIIALDLQVK-GDEIAVGDLMR---- 890 (1096)
T ss_pred eeeccceeehhhhCCeEEEec----------CcEEEEEEccccceehhhhcccCCeEEEEEEec-CcEEEEeeccc----
Confidence 666666667788899865521 246777775555111110111112221122222 37777754332
Q ss_pred CCcccccccceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccC
Q psy9754 212 TNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTT 263 (306)
Q Consensus 212 ~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~ 263 (306)
.-.+..|+..++....++---.++...++..+++..|+.+-...
T Consensus 891 --------Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~g 934 (1096)
T KOG1897|consen 891 --------SITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSG 934 (1096)
T ss_pred --------eEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccc
Confidence 24567888888889999877778788888888988888876554
No 189
>KOG0306|consensus
Probab=57.11 E-value=1.4e+02 Score=28.52 Aligned_cols=98 Identities=12% Similarity=0.144 Sum_probs=48.8
Q ss_pred eeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccc
Q psy9754 140 AVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYS 219 (306)
Q Consensus 140 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~ 219 (306)
+.++.++.+.++.|.. +++-.+|..+.+..+. -. -. +-.+...+..++.+++|+.+
T Consensus 378 sl~vS~d~~~~~Sga~--------~SikiWn~~t~kciRT-i~--~~-y~l~~~Fvpgd~~Iv~G~k~------------ 433 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAG--------ESIKIWNRDTLKCIRT-IT--CG-YILASKFVPGDRYIVLGTKN------------ 433 (888)
T ss_pred EEEeecCceeeeecCC--------CcEEEEEccCcceeEE-ec--cc-cEEEEEecCCCceEEEeccC------------
Confidence 3445566666665532 4567777776654332 11 12 44555566635555666554
Q ss_pred cceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCcc
Q psy9754 220 VSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVT 262 (306)
Q Consensus 220 ~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~ 262 (306)
.++.+||+.+..--....-..+-.+.-....+++=++.||.+
T Consensus 434 -Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saD 475 (888)
T KOG0306|consen 434 -GELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSAD 475 (888)
T ss_pred -CceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCC
Confidence 567888876543221111111111111122266777777766
No 190
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=56.45 E-value=81 Score=23.51 Aligned_cols=81 Identities=10% Similarity=0.103 Sum_probs=46.5
Q ss_pred EEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCccccc----ceeeEE-ECCEEEEEcccCCCCCCCCCccEEEE
Q psy9754 95 VSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARM----GMAVAE-INDKIWIAGGYTGDKMNPVTDKVECY 169 (306)
Q Consensus 95 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~----~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~ 169 (306)
+.++|.+|=++-.........+..||..+.+.++.-++|.... .....+ .+++|.++--..... .-.+++.
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~----~~~IWvm 77 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETS----KIEIWVM 77 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCc----cEEEEEE
Confidence 4567888777665443322268889999999943334443222 233322 367887774311111 2466666
Q ss_pred e---CCCCeeEEc
Q psy9754 170 D---PRTNTWTTL 179 (306)
Q Consensus 170 d---~~~~~W~~~ 179 (306)
+ -...+|+++
T Consensus 78 ~~~~~~~~SWtK~ 90 (164)
T PF07734_consen 78 KKYGYGKESWTKL 90 (164)
T ss_pred eeeccCcceEEEE
Confidence 5 236789887
No 191
>KOG0305|consensus
Probab=55.62 E-value=1.6e+02 Score=26.66 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=42.8
Q ss_pred ceEEEEeCCCCCeeeCCCCCCCccceeeEEE--CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccce-eeEE
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC--LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGM-AVAE 143 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~-~~~~ 143 (306)
..+++++-.++.=..+.++. +.....+.. ++..+.+|-.+ ..++++|..+.. .+..+...+... ++..
T Consensus 197 ~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~-----g~v~iwD~~~~k--~~~~~~~~h~~rvg~la 267 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSD-----GTVQIWDVKEQK--KTRTLRGSHASRVGSLA 267 (484)
T ss_pred ceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecC-----CeEEEEehhhcc--ccccccCCcCceeEEEe
Confidence 35677777666655554443 323333333 46666665433 557788877665 233333322222 3334
Q ss_pred ECCEEEEEcccC
Q psy9754 144 INDKIWIAGGYT 155 (306)
Q Consensus 144 ~~~~iyv~GG~~ 155 (306)
-++.+...|..+
T Consensus 268 W~~~~lssGsr~ 279 (484)
T KOG0305|consen 268 WNSSVLSSGSRD 279 (484)
T ss_pred ccCceEEEecCC
Confidence 567777777654
No 192
>KOG0646|consensus
Probab=55.27 E-value=1.5e+02 Score=26.28 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=37.3
Q ss_pred CCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEE---ECCEEEEEcccCC
Q psy9754 87 YPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAE---INDKIWIAGGYTG 156 (306)
Q Consensus 87 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~---~~~~iyv~GG~~~ 156 (306)
.|...++++..+.-.|+++|... .++|++...++.- +.-+ .+++..-.+. -|+..++.||.++
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~----g~lYlWelssG~L--L~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTIS----GNLYLWELSSGIL--LNVL-SAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred cccceeeeecCCCceEEEeeccc----CcEEEEEeccccH--HHHH-HhhccceeEEEEeCCCcEEEecCCCc
Confidence 44445677777777888887433 5678887777652 1111 3333333332 3677777777663
No 193
>PRK01742 tolB translocation protein TolB; Provisional
Probab=55.23 E-value=1.5e+02 Score=26.25 Aligned_cols=138 Identities=9% Similarity=-0.049 Sum_probs=65.5
Q ss_pred ceeEEEeCCCCcEEeccCCcccccceeeEEECC-EEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEE
Q psy9754 114 SSVECYDPVAHTWEDVAPLKIARMGMAVAEIND-KIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATL 192 (306)
Q Consensus 114 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~ 192 (306)
..++++|..+++-+.+...+.... .....-++ +|++.....+ ...++.+|+.+.....+ ...... ....
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~~~~l-t~~~~~--~~~~ 297 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDG------VLNIYVMGANGGTPSQL-TSGAGN--NTEP 297 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCC------cEEEEEEECCCCCeEee-ccCCCC--cCCE
Confidence 568889998877666654432111 11222244 4544332221 23588889888777666 322111 1122
Q ss_pred EEEeCCE-EEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccce
Q psy9754 193 VSVNNEK-LYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKS 271 (306)
Q Consensus 193 ~~~~~~~-iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~ 271 (306)
....+++ |++...... ...++.++.....-+.+.. .. ......-+++.+++.+. ..
T Consensus 298 ~wSpDG~~i~f~s~~~g-----------~~~I~~~~~~~~~~~~l~~---~~-~~~~~SpDG~~ia~~~~--------~~ 354 (429)
T PRK01742 298 SWSPDGQSILFTSDRSG-----------SPQVYRMSASGGGASLVGG---RG-YSAQISADGKTLVMING--------DN 354 (429)
T ss_pred EECCCCCEEEEEECCCC-----------CceEEEEECCCCCeEEecC---CC-CCccCCCCCCEEEEEcC--------CC
Confidence 2223454 544432211 1356667665543333311 11 11112225544433322 24
Q ss_pred EEEeeccccceec
Q psy9754 272 VECWCFDRQAWIK 284 (306)
Q Consensus 272 ~~~yd~~~~~W~~ 284 (306)
++++|+.+++++.
T Consensus 355 i~~~Dl~~g~~~~ 367 (429)
T PRK01742 355 VVKQDLTSGSTEV 367 (429)
T ss_pred EEEEECCCCCeEE
Confidence 6678888877765
No 194
>KOG0639|consensus
Probab=54.71 E-value=1.7e+02 Score=26.54 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=26.2
Q ss_pred EEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCc
Q psy9754 191 TLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVV 241 (306)
Q Consensus 191 ~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~ 241 (306)
++-...+++-+|+||.. ..+-++|+..-+=..-++++.
T Consensus 470 SckL~pdgrtLivGGea-------------stlsiWDLAapTprikaelts 507 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEA-------------STLSIWDLAAPTPRIKAELTS 507 (705)
T ss_pred eeEecCCCceEEecccc-------------ceeeeeeccCCCcchhhhcCC
Confidence 44455578999999984 667888888766554455544
No 195
>KOG0281|consensus
Probab=54.21 E-value=1.4e+02 Score=25.55 Aligned_cols=52 Identities=13% Similarity=0.308 Sum_probs=33.4
Q ss_pred ceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccc
Q psy9754 221 SDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 221 ~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
..+..++..+.++ +-.+...+.+-+|....|+++|-|..+ +++-+||++.+.
T Consensus 340 RTikvW~~st~ef--vRtl~gHkRGIAClQYr~rlvVSGSSD-------ntIRlwdi~~G~ 391 (499)
T KOG0281|consen 340 RTIKVWSTSTCEF--VRTLNGHKRGIACLQYRDRLVVSGSSD-------NTIRLWDIECGA 391 (499)
T ss_pred ceEEEEeccceee--ehhhhcccccceehhccCeEEEecCCC-------ceEEEEeccccH
Confidence 4567777665544 445555666777778899988888766 344555555443
No 196
>KOG1898|consensus
Probab=53.20 E-value=2.5e+02 Score=28.13 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=67.7
Q ss_pred ccEEEEeCC--CCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCc
Q psy9754 164 DKVECYDPR--TNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVV 241 (306)
Q Consensus 164 ~~~~~~d~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~ 241 (306)
..++.|+.- .++.+-+ .....+..-++++... ++++. |.. +.+++|++-.++-.....+..
T Consensus 912 g~~ytyk~~~~g~~lell-h~T~~~~~v~Ai~~f~-~~~La--gvG-------------~~l~~YdlG~K~lLRk~e~k~ 974 (1205)
T KOG1898|consen 912 GFVYTYKFVRNGDKLELL-HKTEIPGPVGAICPFQ-GRVLA--GVG-------------RFLRLYDLGKKKLLRKCELKF 974 (1205)
T ss_pred CceEEEEEEecCceeeee-eccCCCccceEEeccC-CEEEE--ecc-------------cEEEEeeCChHHHHhhhhhcc
Confidence 346666533 2223333 3333333334556666 65544 332 568999998776554443333
Q ss_pred ccccceeeeeCCEEEEEeCccCccccccceEEEeeccccceeccCCCCcccccceeeEEecCC
Q psy9754 242 PRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPATILGHSSVALPLK 304 (306)
Q Consensus 242 ~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~ 304 (306)
-+..-+.......-.++|..... =..++|+++.|+-.. ..+.|.+|.-.++..++..
T Consensus 975 ~p~~Is~iqt~~~RI~VgD~qeS-----V~~~~y~~~~n~l~~-fadD~~pR~Vt~~~~lD~~ 1031 (1205)
T KOG1898|consen 975 IPNRISSIQTYGARIVVGDIQES-----VHFVRYRREDNQLIV-FADDPVPRHVTALELLDYD 1031 (1205)
T ss_pred CceEEEEEeecceEEEEeeccce-----EEEEEEecCCCeEEE-EeCCCccceeeEEEEecCC
Confidence 22333333344444455544421 356788999999988 6788999998888887754
No 197
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=52.54 E-value=1.1e+02 Score=23.69 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=41.8
Q ss_pred CCccEEEEeCCCCeeEEcccccCCcceeEE-EEEEeCCEE-EEEcC-CCCCCCCCcccccccceeeEEECCCCceEeccc
Q psy9754 162 VTDKVECYDPRTNTWTTLATKLRYPRYLAT-LVSVNNEKL-YIIGG-ASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTE 238 (306)
Q Consensus 162 ~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~i-yi~GG-~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~ 238 (306)
..+.++.+|..++.|..+.-......+.+- +.=+.+..| +++|. ...-.. -..+++|++.++.-+.+-+
T Consensus 86 giGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~--------GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSK--------GGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred cceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEcc--------CCeEEEEEccCCceeEeee
Confidence 378999999999998766211111112111 223334454 44441 111111 2679999999999887776
Q ss_pred CCcc
Q psy9754 239 LVVP 242 (306)
Q Consensus 239 ~p~~ 242 (306)
....
T Consensus 158 ~~dk 161 (200)
T PF15525_consen 158 WKDK 161 (200)
T ss_pred cccc
Confidence 5443
No 198
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=51.83 E-value=1.5e+02 Score=25.04 Aligned_cols=144 Identities=9% Similarity=0.026 Sum_probs=76.1
Q ss_pred CCccceeeEEE--CCEEEEEccCCCCCCCceeEEEeCCCCcEEe-ccCCc-ccccceeeEEECCE-EEEEcccCCCCCCC
Q psy9754 87 YPRKIFSFVSC--LDKIYAIGGQDCKTLLSSVECYDPVAHTWED-VAPLK-IARMGMAVAEINDK-IWIAGGYTGDKMNP 161 (306)
Q Consensus 87 ~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~-~~~~~-~~~~~~~~~~~~~~-iyv~GG~~~~~~~~ 161 (306)
.|--.|.++.. ...+.+|+-.-. .-..+||+.+.+-.. +.+.+ .--++|++..-+++ +|..-..-..
T Consensus 3 lP~RgH~~a~~p~~~~avafaRRPG----~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~---- 74 (305)
T PF07433_consen 3 LPARGHGVAAHPTRPEAVAFARRPG----TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYET---- 74 (305)
T ss_pred CCccccceeeCCCCCeEEEEEeCCC----cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCC----
Confidence 34334555555 456777765433 557789999988543 33322 33467888877765 4544332222
Q ss_pred CCccEEEEeCCCCeeEEcccccCCc-ceeEEEEEEeCC-EEEEEcC-CCCCCCC---CcccccccceeeEEECCCCceEe
Q psy9754 162 VTDKVECYDPRTNTWTTLATKLRYP-RYLATLVSVNNE-KLYIIGG-ASQTDAT---NTQKMYSVSDLDVFVSNEKEWKF 235 (306)
Q Consensus 162 ~~~~~~~~d~~~~~W~~~~~~~~~~-~~~~~~~~~~~~-~iyi~GG-~~~~~~~---~~~~~~~~~~~~~y~~~~~~W~~ 235 (306)
....|-+||.. ...+++ ...+.. -.-|-+....++ .|+|..| ....... +-.-..+-.++-..|..+.+-..
T Consensus 75 g~G~IgVyd~~-~~~~ri-~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~ 152 (305)
T PF07433_consen 75 GRGVIGVYDAA-RGYRRI-GEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE 152 (305)
T ss_pred CcEEEEEEECc-CCcEEE-eEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence 25789999988 666666 333322 223456666666 5655544 3322111 11111122345556676666443
Q ss_pred cccCC
Q psy9754 236 VTELV 240 (306)
Q Consensus 236 ~~~~p 240 (306)
.-.+|
T Consensus 153 q~~Lp 157 (305)
T PF07433_consen 153 QVELP 157 (305)
T ss_pred eeecC
Confidence 33343
No 199
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=51.13 E-value=1.5e+02 Score=25.01 Aligned_cols=179 Identities=14% Similarity=0.083 Sum_probs=85.0
Q ss_pred eceEEEEeCCCCCeeeCCCCCCCccceeeEEE--CCEEEEEccCCCCCCCceeEEEeCCCCcE-EeccCC----cccccc
Q psy9754 66 SNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC--LDKIYAIGGQDCKTLLSSVECYDPVAHTW-EDVAPL----KIARMG 138 (306)
Q Consensus 66 ~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~w-~~~~~~----~~~~~~ 138 (306)
-+.+++||+.+++=+.... |... .+.... ++.|.+.. ..+..+++.+..- +.+.+. +..|..
T Consensus 46 ~~~i~r~~~~~g~~~~~~~-p~~~--~~~~~~d~~g~Lv~~~--------~g~~~~~~~~~~~~t~~~~~~~~~~~~r~N 114 (307)
T COG3386 46 GGRIHRLDPETGKKRVFPS-PGGF--SSGALIDAGGRLIACE--------HGVRLLDPDTGGKITLLAEPEDGLPLNRPN 114 (307)
T ss_pred CCeEEEecCCcCceEEEEC-CCCc--ccceeecCCCeEEEEc--------cccEEEeccCCceeEEeccccCCCCcCCCC
Confidence 4577888887654333221 1111 222223 34554442 2234455543332 444322 233333
Q ss_pred eeeEEECCEEEEEccc---CCCCCCCCCccEEEEeCCCCeeEEcccc-cCCcceeEEEEEEeCC-EEEEEcCCCCCCCCC
Q psy9754 139 MAVAEINDKIWIAGGY---TGDKMNPVTDKVECYDPRTNTWTTLATK-LRYPRYLATLVSVNNE-KLYIIGGASQTDATN 213 (306)
Q Consensus 139 ~~~~~~~~~iyv~GG~---~~~~~~~~~~~~~~~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~-~iyi~GG~~~~~~~~ 213 (306)
=..+--++.||+-.-. .......-...++++|+. ...+++... +..+ .+++...++ .+|+.--.
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~---NGla~SpDg~tly~aDT~------- 183 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIP---NGLAFSPDGKTLYVADTP------- 183 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEec---CceEECCCCCEEEEEeCC-------
Confidence 3444456777775433 122222225689999984 555555222 2111 234444445 66665432
Q ss_pred cccccccceeeEEECCCCc--------eEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccc
Q psy9754 214 TQKMYSVSDLDVFVSNEKE--------WKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDR 279 (306)
Q Consensus 214 ~~~~~~~~~~~~y~~~~~~--------W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~ 279 (306)
...+++|+.+... +.... ...++--..++--+|.+|+...... ..|.+|+++.
T Consensus 184 ------~~~i~r~~~d~~~g~~~~~~~~~~~~-~~~G~PDG~~vDadG~lw~~a~~~g------~~v~~~~pdG 244 (307)
T COG3386 184 ------ANRIHRYDLDPATGPIGGRRGFVDFD-EEPGLPDGMAVDADGNLWVAAVWGG------GRVVRFNPDG 244 (307)
T ss_pred ------CCeEEEEecCcccCccCCcceEEEcc-CCCCCCCceEEeCCCCEEEecccCC------ceEEEECCCC
Confidence 2567777765311 11111 1112222233344888997544332 4788999983
No 200
>PRK01029 tolB translocation protein TolB; Provisional
Probab=50.81 E-value=1.8e+02 Score=25.84 Aligned_cols=59 Identities=12% Similarity=-0.065 Sum_probs=35.6
Q ss_pred ceeeEEECCCCceEecccCCcccccceeee-eCCEEEEEeCccCccccccceEEEeeccccceecc
Q psy9754 221 SDLDVFVSNEKEWKFVTELVVPRHAHSASV-LSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKG 285 (306)
Q Consensus 221 ~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~ 285 (306)
..+++||+.+.+.+.+...+. ....... -+++.+++..... ....++++|+++++.+.+
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~~~--~~~~p~wSpDG~~L~f~~~~~----g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTSPE--NKESPSWAIDSLHLVYSAGNS----NESELYLISLITKKTRKI 410 (428)
T ss_pred cEEEEEECCCCCeEEccCCCC--CccceEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEe
Confidence 578999999998887764321 1122222 2555444432221 125799999998888774
No 201
>KOG0282|consensus
Probab=49.91 E-value=78 Score=28.14 Aligned_cols=61 Identities=11% Similarity=0.227 Sum_probs=35.4
Q ss_pred CEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeee--CC-EEEEEeCccCccccccceEEE
Q psy9754 198 EKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVL--SS-QILIIGGVTTVYKRTLKSVEC 274 (306)
Q Consensus 198 ~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~~~ 274 (306)
+.-++..+.. ..+-.+|.++++-..--.+ . .-..++-. ++ ++|++||.+ .++-.
T Consensus 270 g~~fLS~sfD-------------~~lKlwDtETG~~~~~f~~--~-~~~~cvkf~pd~~n~fl~G~sd-------~ki~~ 326 (503)
T KOG0282|consen 270 GTSFLSASFD-------------RFLKLWDTETGQVLSRFHL--D-KVPTCVKFHPDNQNIFLVGGSD-------KKIRQ 326 (503)
T ss_pred CCeeeeeecc-------------eeeeeeccccceEEEEEec--C-CCceeeecCCCCCcEEEEecCC-------CcEEE
Confidence 5566666654 4567788887764422211 1 11122222 44 899999988 46677
Q ss_pred eeccccc
Q psy9754 275 WCFDRQA 281 (306)
Q Consensus 275 yd~~~~~ 281 (306)
||+.+++
T Consensus 327 wDiRs~k 333 (503)
T KOG0282|consen 327 WDIRSGK 333 (503)
T ss_pred EeccchH
Confidence 7776654
No 202
>KOG3881|consensus
Probab=49.72 E-value=1.7e+02 Score=25.34 Aligned_cols=149 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred EEEEEccCCCCCCCceeEEEeCCCCc--EEeccC------CcccccceeeEEECC--EEEEEcccCCCCCCCCCccEEEE
Q psy9754 100 KIYAIGGQDCKTLLSSVECYDPVAHT--WEDVAP------LKIARMGMAVAEIND--KIWIAGGYTGDKMNPVTDKVECY 169 (306)
Q Consensus 100 ~iyv~GG~~~~~~~~~~~~~d~~~~~--w~~~~~------~~~~~~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~~ 169 (306)
.|..+||..+ .+.+.++|.++.+ |+-... |..+.-...+..+.+ .--++-+.. ...+..|
T Consensus 162 ~Iva~GGke~---~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~-------~hqvR~Y 231 (412)
T KOG3881|consen 162 YIVATGGKEN---INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR-------YHQVRLY 231 (412)
T ss_pred ceEecCchhc---ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec-------ceeEEEe
Q ss_pred eCCCCe--eEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccce
Q psy9754 170 DPRTNT--WTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHS 247 (306)
Q Consensus 170 d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~ 247 (306)
|+..+. -.++ ..+..+-.+.+...-. +.||+-.-. ..+-.||.....---..---..-.-.+
T Consensus 232 Dt~~qRRPV~~f-d~~E~~is~~~l~p~g-n~Iy~gn~~--------------g~l~~FD~r~~kl~g~~~kg~tGsirs 295 (412)
T KOG3881|consen 232 DTRHQRRPVAQF-DFLENPISSTGLTPSG-NFIYTGNTK--------------GQLAKFDLRGGKLLGCGLKGITGSIRS 295 (412)
T ss_pred cCcccCcceeEe-ccccCcceeeeecCCC-cEEEEeccc--------------chhheecccCceeeccccCCccCCcce
Q ss_pred eeee-CCEEEEEeCccCccccccceEEEeeccccc
Q psy9754 248 ASVL-SSQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 248 ~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
.... ...++..+|-+ .-+-+||.++++
T Consensus 296 ih~hp~~~~las~GLD-------RyvRIhD~ktrk 323 (412)
T KOG3881|consen 296 IHCHPTHPVLASCGLD-------RYVRIHDIKTRK 323 (412)
T ss_pred EEEcCCCceEEeeccc-------eeEEEeecccch
No 203
>KOG0263|consensus
Probab=49.58 E-value=2.4e+02 Score=26.82 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=47.8
Q ss_pred ECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEE-CCEEEEEcccCCCCCCCCCccEEEEeCCCCe
Q psy9754 97 CLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEI-NDKIWIAGGYTGDKMNPVTDKVECYDPRTNT 175 (306)
Q Consensus 97 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~ 175 (306)
+.+.-|++.|... ..+-++|..++.-.++=.- +.+.-.+++.. .|+ |+..|.. -..+-.+|+.+.+
T Consensus 544 HPNs~Y~aTGSsD----~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr-~LaSg~e-------d~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 544 HPNSNYVATGSSD----RTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGR-YLASGDE-------DGLIKIWDLANGS 610 (707)
T ss_pred CCcccccccCCCC----ceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCc-eEeeccc-------CCcEEEEEcCCCc
Confidence 4566777766333 4566677777765444321 11111222222 454 4443322 2567888888764
Q ss_pred e-EEcccccCCcceeEEEEEEeCCEEEEEcCCC
Q psy9754 176 W-TTLATKLRYPRYLATLVSVNNEKLYIIGGAS 207 (306)
Q Consensus 176 W-~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~ 207 (306)
- ..+ ..- .... .++..-.++.+++.||..
T Consensus 611 ~v~~l-~~H-t~ti-~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 611 LVKQL-KGH-TGTI-YSLSFSRDGNVLASGGAD 640 (707)
T ss_pred chhhh-hcc-cCce-eEEEEecCCCEEEecCCC
Confidence 3 222 111 1211 233333368999999876
No 204
>KOG0322|consensus
Probab=47.27 E-value=1.6e+02 Score=24.22 Aligned_cols=54 Identities=15% Similarity=0.332 Sum_probs=31.9
Q ss_pred EEEEEe-CCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcc---cccceeeee--CCEEEEEeCcc
Q psy9754 191 TLVSVN-NEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVP---RHAHSASVL--SSQILIIGGVT 262 (306)
Q Consensus 191 ~~~~~~-~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~---~~~~~~~~~--~~~i~v~GG~~ 262 (306)
+.+.+. |++|+...|+. ..+.+| .|+.+.++..- +....++.+ +-.+...++.+
T Consensus 255 ~gvrIRpD~KIlATAGWD-------------~RiRVy-----swrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 255 SGVRIRPDGKILATAGWD-------------HRIRVY-----SWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred cceEEccCCcEEeecccC-------------CcEEEE-----EeccCCchhhhhhhhcceeEEEeCCCCchhhhccCC
Confidence 344443 69999999997 456777 46666655332 222222222 44777777766
No 205
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=47.02 E-value=1.9e+02 Score=25.29 Aligned_cols=79 Identities=15% Similarity=0.093 Sum_probs=39.3
Q ss_pred CCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCc-ceeEEEEEEeCCEEEEEcCCCCCCCCCccccccccee
Q psy9754 145 NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYP-RYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDL 223 (306)
Q Consensus 145 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~ 223 (306)
+++-++|.+.... ...++..|+++.+-+++ ...+.. ..+ ..+...+..+|.+-.. ..+
T Consensus 46 dG~kllF~s~~dg-----~~nly~lDL~t~~i~QL-Tdg~g~~~~g-~~~s~~~~~~~Yv~~~--------------~~l 104 (386)
T PF14583_consen 46 DGRKLLFASDFDG-----NRNLYLLDLATGEITQL-TDGPGDNTFG-GFLSPDDRALYYVKNG--------------RSL 104 (386)
T ss_dssp TS-EEEEEE-TTS-----S-EEEEEETTT-EEEE----SS-B-TTT--EE-TTSSEEEEEETT--------------TEE
T ss_pred CCCEEEEEeccCC-----CcceEEEEcccCEEEEC-ccCCCCCccc-eEEecCCCeEEEEECC--------------CeE
Confidence 4555555554322 36789999999999998 554422 332 3333444676555311 457
Q ss_pred eEEECCCCceEecccCCcccc
Q psy9754 224 DVFVSNEKEWKFVTELVVPRH 244 (306)
Q Consensus 224 ~~y~~~~~~W~~~~~~p~~~~ 244 (306)
...|+++.+=+.+-..|..-.
T Consensus 105 ~~vdL~T~e~~~vy~~p~~~~ 125 (386)
T PF14583_consen 105 RRVDLDTLEERVVYEVPDDWK 125 (386)
T ss_dssp EEEETTT--EEEEEE--TTEE
T ss_pred EEEECCcCcEEEEEECCcccc
Confidence 888888877656666665543
No 206
>KOG2048|consensus
Probab=47.02 E-value=2.5e+02 Score=26.35 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=30.8
Q ss_pred ceeEEEeCCCCcEEeccCC--cccccceeeEE-ECCEEEEEcccCCCCCCCCCccEEEEeCCCCe
Q psy9754 114 SSVECYDPVAHTWEDVAPL--KIARMGMAVAE-INDKIWIAGGYTGDKMNPVTDKVECYDPRTNT 175 (306)
Q Consensus 114 ~~~~~~d~~~~~w~~~~~~--~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~ 175 (306)
..+++|++..+ |-....+ +.-|+--+.+- -++++|-+|+ ...+..+|+.+..
T Consensus 47 g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~---------sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 47 GNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWAEGGRLFSSGL---------SGSITEWDLHTLK 101 (691)
T ss_pred CcEEEEccCCC-ceeeEEEecCCCCceeeEEEccCCeEEeecC---------CceEEEEecccCc
Confidence 66899999884 5433322 33333333333 4789999986 3455666665554
No 207
>KOG1445|consensus
Probab=46.87 E-value=1.7e+02 Score=27.42 Aligned_cols=58 Identities=12% Similarity=0.235 Sum_probs=32.3
Q ss_pred ccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCC
Q psy9754 164 DKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNE 230 (306)
Q Consensus 164 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~ 230 (306)
..+.+|+|....-.-...+-|....++-..-..+++++++-|...... ..+..||..+
T Consensus 742 g~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~Se---------RQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSE---------RQVQMYDAQT 799 (1012)
T ss_pred ceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccch---------hhhhhhhhhh
Confidence 567888887664222212333343333444444589988888865433 3456676543
No 208
>KOG2315|consensus
Probab=46.51 E-value=2.3e+02 Score=25.86 Aligned_cols=75 Identities=11% Similarity=0.106 Sum_probs=45.2
Q ss_pred ceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccc--------eeccCCCCccc
Q psy9754 221 SDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQA--------WIKGVSGLPAT 292 (306)
Q Consensus 221 ~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~--------W~~~~~~~p~~ 292 (306)
..+-+||++-+--. .+|.+........-.++|.++.|..... .+|++||..+.+ |+.+..=-|.+
T Consensus 294 Akvtifnlr~~~v~---df~egpRN~~~fnp~g~ii~lAGFGNL~----G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdG 366 (566)
T KOG2315|consen 294 AKVTIFNLRGKPVF---DFPEGPRNTAFFNPHGNIILLAGFGNLP----GDMEVWDVPNRKLIAKFKAANTTVFEWSPDG 366 (566)
T ss_pred ceEEEEcCCCCEeE---eCCCCCccceEECCCCCEEEEeecCCCC----CceEEEeccchhhccccccCCceEEEEcCCC
Confidence 45677877655433 3444433344444477888888876532 688999986643 33322224677
Q ss_pred ccceeeEEec
Q psy9754 293 ILGHSSVALP 302 (306)
Q Consensus 293 r~~~~~~~~~ 302 (306)
++...|.+.|
T Consensus 367 e~flTATTaP 376 (566)
T KOG2315|consen 367 EYFLTATTAP 376 (566)
T ss_pred cEEEEEeccc
Confidence 7777777665
No 209
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=46.37 E-value=2e+02 Score=25.07 Aligned_cols=98 Identities=11% Similarity=0.141 Sum_probs=53.9
Q ss_pred CCCeeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccC-----Cc--ccccceeeEEECCEE
Q psy9754 76 NKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAP-----LK--IARMGMAVAEINDKI 148 (306)
Q Consensus 76 t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~-----~~--~~~~~~~~~~~~~~i 148 (306)
.+.|+.+.. .....-.++.++|++|++.- ...++.++..- +-.++.+ +. ........+...|++
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdL 259 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGEL 259 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEE
Confidence 478998864 22224567888999999932 24456666321 1122221 11 111224456677888
Q ss_pred EEEcccCCCCC-----------CCCCccEEEEeCCCCeeEEccccc
Q psy9754 149 WIAGGYTGDKM-----------NPVTDKVECYDPRTNTWTTLATKL 183 (306)
Q Consensus 149 yv~GG~~~~~~-----------~~~~~~~~~~d~~~~~W~~~~~~~ 183 (306)
+++........ ....-.+++.|.+..+|.++ ..+
T Consensus 260 LmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV-~sL 304 (373)
T PLN03215 260 YIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEV-KTL 304 (373)
T ss_pred EEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEe-ccc
Confidence 88876422110 00112556668888899998 444
No 210
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=46.14 E-value=2e+02 Score=25.05 Aligned_cols=105 Identities=10% Similarity=0.049 Sum_probs=56.3
Q ss_pred CCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccc----cCCcc--eeEEEEEEe
Q psy9754 123 AHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATK----LRYPR--YLATLVSVN 196 (306)
Q Consensus 123 ~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~----~~~~~--~~~~~~~~~ 196 (306)
.+.|+.+.. .....--++.++|++|++.- ...++.++.+- .-+++.+. +...+ .....+...
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~---------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~ 256 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS---------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECC 256 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC---------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEEC
Confidence 489999974 22234477889999999831 34566666432 22232111 10111 122355555
Q ss_pred CCEEEEEcCCCCCCCCC----ccc--ccccceeeEEECCCCceEecccCC
Q psy9754 197 NEKLYIIGGASQTDATN----TQK--MYSVSDLDVFVSNEKEWKFVTELV 240 (306)
Q Consensus 197 ~~~iyi~GG~~~~~~~~----~~~--~~~~~~~~~y~~~~~~W~~~~~~p 240 (306)
|+++++.......... ... ....-.++..|.+..+|.++..+.
T Consensus 257 -GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 257 -GELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred -CEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 8899987642211100 000 011124566688889999998775
No 211
>KOG0772|consensus
Probab=45.90 E-value=2.3e+02 Score=25.73 Aligned_cols=145 Identities=14% Similarity=0.253 Sum_probs=70.6
Q ss_pred CCEEEEEccCCCCCCCceeEEEeCCCCcEEec-------cCCcccccceeeEEE-------CCEEEEEcccCCCCCCCCC
Q psy9754 98 LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDV-------APLKIARMGMAVAEI-------NDKIWIAGGYTGDKMNPVT 163 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~-------~~~~~~~~~~~~~~~-------~~~iyv~GG~~~~~~~~~~ 163 (306)
++.|.++.|.. ..-+||-...+|.+. .+|.... +|.+.+. +...|+..+.++
T Consensus 226 g~~iLvvsg~a------qakl~DRdG~~~~e~~KGDQYI~Dm~nTK-GHia~lt~g~whP~~k~~FlT~s~Dg------- 291 (641)
T KOG0772|consen 226 GDQILVVSGSA------QAKLLDRDGFEIVEFSKGDQYIRDMYNTK-GHIAELTCGCWHPDNKEEFLTCSYDG------- 291 (641)
T ss_pred CCeEEEEecCc------ceeEEccCCceeeeeeccchhhhhhhccC-CceeeeeccccccCcccceEEecCCC-------
Confidence 67888887743 344577777777653 2333222 2332221 334566555442
Q ss_pred ccEEEEeCCCCe--eEEcc-cccCCcceeEEEEEEe-CCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccC
Q psy9754 164 DKVECYDPRTNT--WTTLA-TKLRYPRYLATLVSVN-NEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTEL 239 (306)
Q Consensus 164 ~~~~~~d~~~~~--W~~~~-~~~~~~~~~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~ 239 (306)
.+..+|...-+ -+-+. ......|...+.|..+ ++++ |.+|... .+|.+++. ..|..-+.+
T Consensus 292 -tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~D------------GSIQ~W~~--~~~~v~p~~ 355 (641)
T KOG0772|consen 292 -TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLD------------GSIQIWDK--GSRTVRPVM 355 (641)
T ss_pred -cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccC------------Cceeeeec--CCcccccce
Confidence 23333332211 11111 2223445656666666 4666 5555432 34566654 344433322
Q ss_pred -----Ccccccceeeee--CCEEEEEeCccCccccccceEEEeeccc
Q psy9754 240 -----VVPRHAHSASVL--SSQILIIGGVTTVYKRTLKSVECWCFDR 279 (306)
Q Consensus 240 -----p~~~~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~yd~~~ 279 (306)
..+....+++.+ ++++++-=|.+ ..+-+||+..
T Consensus 356 ~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D-------~tLKvWDLrq 395 (641)
T KOG0772|consen 356 KVKDAHLPGQDITSISFSYDGNYLLSRGFD-------DTLKVWDLRQ 395 (641)
T ss_pred EeeeccCCCCceeEEEeccccchhhhccCC-------Cceeeeeccc
Confidence 112112233333 77777766666 5677888865
No 212
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=45.56 E-value=3e+02 Score=26.82 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=22.2
Q ss_pred eEEECCEEEEEcccCCC--CCCCCCccEEEEeCCCCe--eEE
Q psy9754 141 VAEINDKIWIAGGYTGD--KMNPVTDKVECYDPRTNT--WTT 178 (306)
Q Consensus 141 ~~~~~~~iyv~GG~~~~--~~~~~~~~~~~~d~~~~~--W~~ 178 (306)
-.+.++.|++ |+...+ ........+..||.+|.+ |+-
T Consensus 312 P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 312 PLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred CEEECCEEEE-EecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 3556777666 543222 111225789999999886 754
No 213
>KOG0274|consensus
Probab=44.48 E-value=2.6e+02 Score=25.85 Aligned_cols=147 Identities=16% Similarity=0.222 Sum_probs=71.6
Q ss_pred EEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccce-eeEEECC-EEEEEcccCCCCCCCCCccEEEEeCC
Q psy9754 95 VSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGM-AVAEIND-KIWIAGGYTGDKMNPVTDKVECYDPR 172 (306)
Q Consensus 95 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~-~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~d~~ 172 (306)
+.+++.+.+.|..+ ..+-++|+.+.+. +..+.. +.+. ....+++ ...+-|..+ ..+.++|+.
T Consensus 337 v~~~~~~lvsgs~d-----~~v~VW~~~~~~c--l~sl~g-H~~~V~sl~~~~~~~~~Sgs~D--------~~IkvWdl~ 400 (537)
T KOG0274|consen 337 VQLDEPLLVSGSYD-----GTVKVWDPRTGKC--LKSLSG-HTGRVYSLIVDSENRLLSGSLD--------TTIKVWDLR 400 (537)
T ss_pred EEecCCEEEEEecC-----ceEEEEEhhhcee--eeeecC-CcceEEEEEecCcceEEeeeec--------cceEeecCC
Confidence 34466777776654 3566778875553 222221 1111 1223444 444444433 346677777
Q ss_pred CCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeC
Q psy9754 173 TNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLS 252 (306)
Q Consensus 173 ~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~ 252 (306)
+.. +....+............. +++++-+... ..+.++|.+++.-...-.-+ ......+....
T Consensus 401 ~~~--~c~~tl~~h~~~v~~l~~~-~~~Lvs~~aD-------------~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~ 463 (537)
T KOG0274|consen 401 TKR--KCIHTLQGHTSLVSSLLLR-DNFLVSSSAD-------------GTIKLWDAEEGECLRTLEGR-HVGGVSALALG 463 (537)
T ss_pred chh--hhhhhhcCCcccccccccc-cceeEecccc-------------ccEEEeecccCceeeeeccC-CcccEEEeecC
Confidence 663 1101111111111222223 5666665543 45778888777655444333 22222233334
Q ss_pred CEEEEEeCccCccccccceEEEeeccccc
Q psy9754 253 SQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 253 ~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
...++..+.+ ..+.+||+.+.+
T Consensus 464 ~~~il~s~~~-------~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 464 KEEILCSSDD-------GSVKLWDLRSGT 485 (537)
T ss_pred cceEEEEecC-------CeeEEEecccCc
Confidence 5677776666 467777776654
No 214
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=43.48 E-value=1.4e+02 Score=22.29 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=46.0
Q ss_pred EEECCEEEEEcccCCCCCCCCCccEEEEeCCCCee-EEcccccCCc--ceeEEEEEEeCCEEEEEcCCCCCCCCCccccc
Q psy9754 142 AEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTW-TTLATKLRYP--RYLATLVSVNNEKLYIIGGASQTDATNTQKMY 218 (306)
Q Consensus 142 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W-~~~~~~~~~~--~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~ 218 (306)
+.++|.+|=+.-...... ...+..||..+.++ ..++.|.... ........+.+++|.++--....
T Consensus 2 V~vnG~~hW~~~~~~~~~---~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~--------- 69 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE---KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDET--------- 69 (164)
T ss_pred EEECCEEEeeEEecCCCC---ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCC---------
Confidence 457788876665443322 12699999999999 5652221111 12233333334778777321111
Q ss_pred ccceeeEEE---CCCCceEecccC
Q psy9754 219 SVSDLDVFV---SNEKEWKFVTEL 239 (306)
Q Consensus 219 ~~~~~~~y~---~~~~~W~~~~~~ 239 (306)
..-++|+-+ ....+|+++-.+
T Consensus 70 ~~~~IWvm~~~~~~~~SWtK~~~i 93 (164)
T PF07734_consen 70 SKIEIWVMKKYGYGKESWTKLFTI 93 (164)
T ss_pred ccEEEEEEeeeccCcceEEEEEEE
Confidence 113555544 236789977543
No 215
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=43.02 E-value=1.7e+02 Score=23.26 Aligned_cols=98 Identities=8% Similarity=0.122 Sum_probs=58.4
Q ss_pred eeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCe--eEEcccccCCcc-eeEEEEEEeCCEEEEEcCCCCCCCCCccc
Q psy9754 140 AVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNT--WTTLATKLRYPR-YLATLVSVNNEKLYIIGGASQTDATNTQK 216 (306)
Q Consensus 140 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~-~~~~~~~~~~~~iyi~GG~~~~~~~~~~~ 216 (306)
+....+++|+.-.|..+ .+++.++|+.+.+ |++- -+ + ++ ++-+.+..+ +.+|...-..
T Consensus 50 GL~~~~g~i~esTG~yg------~S~ir~~~L~~gq~~~s~~-l~-~-~~~FgEGit~~g-d~~y~LTw~e--------- 110 (262)
T COG3823 50 GLEYLDGHILESTGLYG------FSKIRVSDLTTGQEIFSEK-LA-P-DTVFGEGITKLG-DYFYQLTWKE--------- 110 (262)
T ss_pred ceeeeCCEEEEeccccc------cceeEEEeccCceEEEEee-cC-C-ccccccceeecc-ceEEEEEecc---------
Confidence 44556888888877654 3678999988665 5443 22 2 34 344555666 8999886433
Q ss_pred ccccceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCcc
Q psy9754 217 MYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVT 262 (306)
Q Consensus 217 ~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~ 262 (306)
..-+.||. ++.+.+...+.+-.+-+.+.-+..+.+-.|..
T Consensus 111 ----gvaf~~d~--~t~~~lg~~~y~GeGWgLt~d~~~LimsdGsa 150 (262)
T COG3823 111 ----GVAFKYDA--DTLEELGRFSYEGEGWGLTSDDKNLIMSDGSA 150 (262)
T ss_pred ----ceeEEECh--HHhhhhcccccCCcceeeecCCcceEeeCCce
Confidence 22356654 34555555555544455555566666666654
No 216
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.52 E-value=2.1e+02 Score=24.16 Aligned_cols=207 Identities=11% Similarity=0.090 Sum_probs=99.8
Q ss_pred eceEEEEeCCCCCeeeCCCCCCCccc--eeeEEECC-EEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcc-cccceee
Q psy9754 66 SNSVWSFNPNNKQWTQEPNMTYPRKI--FSFVSCLD-KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKI-ARMGMAV 141 (306)
Q Consensus 66 ~~~~~~~d~~t~~W~~~~~~~~~~~~--~~~~~~~~-~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~-~~~~~~~ 141 (306)
-.-.++||+.+++=...-..+..|++ |.+.+-++ .+|.--. +.+.....+-+||.. .+.+++..++. ...-|-+
T Consensus 27 G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEn-d~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel 104 (305)
T PF07433_consen 27 GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEN-DYETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHEL 104 (305)
T ss_pred CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecc-ccCCCcEEEEEEECc-CCcEEEeEecCCCcChhhE
Confidence 45678999999875443334555643 44555455 5555533 223445667889998 67777777663 3333444
Q ss_pred EEE-CC-EEEEE-cccCCCCC---CC-----CCccEEEEeCCCCeeEEcccccCC--cc-eeEEEEEEeCCEEEEEcCCC
Q psy9754 142 AEI-ND-KIWIA-GGYTGDKM---NP-----VTDKVECYDPRTNTWTTLATKLRY--PR-YLATLVSVNNEKLYIIGGAS 207 (306)
Q Consensus 142 ~~~-~~-~iyv~-GG~~~~~~---~~-----~~~~~~~~d~~~~~W~~~~~~~~~--~~-~~~~~~~~~~~~iyi~GG~~ 207 (306)
... ++ .|.|. ||...+.. .+ ...++...|..+.+-.+. -.+|. .+ +--.++.-. +-++++|..-
T Consensus 105 ~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q-~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~ 182 (305)
T PF07433_consen 105 LLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ-VELPPDLHQLSIRHLAVDG-DGTVAFAMQY 182 (305)
T ss_pred EEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee-eecCccccccceeeEEecC-CCcEEEEEec
Confidence 333 44 55555 44332211 01 124666777777764322 11211 11 111233344 3444555433
Q ss_pred CCCCCCcccccccceeeEEECCCCceEecccCC----cccccceeeee--CCEEE-EEeCccCccccccceEEEeecccc
Q psy9754 208 QTDATNTQKMYSVSDLDVFVSNEKEWKFVTELV----VPRHAHSASVL--SSQIL-IIGGVTTVYKRTLKSVECWCFDRQ 280 (306)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p----~~~~~~~~~~~--~~~i~-v~GG~~~~~~~~~~~~~~yd~~~~ 280 (306)
..... .. ..-+..++.... -+.+...+ .-+.+.+.+.. ++..+ +..-.. +.+.+||.+++
T Consensus 183 qg~~~---~~--~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG-------g~~~~~d~~tg 249 (305)
T PF07433_consen 183 QGDPG---DA--PPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG-------GRVAVWDAATG 249 (305)
T ss_pred CCCCC---cc--CCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC-------CEEEEEECCCC
Confidence 22211 01 112333333221 22222111 11234444444 44444 443333 67889999999
Q ss_pred ceeccCCCCc
Q psy9754 281 AWIKGVSGLP 290 (306)
Q Consensus 281 ~W~~~~~~~p 290 (306)
.|.. ...+|
T Consensus 250 ~~~~-~~~l~ 258 (305)
T PF07433_consen 250 RLLG-SVPLP 258 (305)
T ss_pred CEee-ccccC
Confidence 9977 44544
No 217
>KOG0293|consensus
Probab=42.45 E-value=2.4e+02 Score=24.86 Aligned_cols=144 Identities=13% Similarity=0.176 Sum_probs=76.5
Q ss_pred CCEEEEEccCCCCCCCceeEEEeCCCCc---EEeccCCcccccceeeEEEC-CEEEEEcccCCCCCCCCCccEEEEeCCC
Q psy9754 98 LDKIYAIGGQDCKTLLSSVECYDPVAHT---WEDVAPLKIARMGMAVAEIN-DKIWIAGGYTGDKMNPVTDKVECYDPRT 173 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~---w~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~d~~~ 173 (306)
++.=+|.|+.+ ..+.++|...+. |+-... ++..--+...+ ..+++++ . -..+..|+.++
T Consensus 323 Dg~~~V~Gs~d-----r~i~~wdlDgn~~~~W~gvr~---~~v~dlait~Dgk~vl~v~-~--------d~~i~l~~~e~ 385 (519)
T KOG0293|consen 323 DGFRFVTGSPD-----RTIIMWDLDGNILGNWEGVRD---PKVHDLAITYDGKYVLLVT-V--------DKKIRLYNREA 385 (519)
T ss_pred CCceeEecCCC-----CcEEEecCCcchhhccccccc---ceeEEEEEcCCCcEEEEEe-c--------ccceeeechhh
Confidence 77778888865 557777777554 765543 33333333344 4555554 1 24566777665
Q ss_pred CeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccC---Ccccccceeee
Q psy9754 174 NTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTEL---VVPRHAHSASV 250 (306)
Q Consensus 174 ~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~---p~~~~~~~~~~ 250 (306)
..=..+ -. .....++...-+++++.++.=.+ .++..+|++ +|..+... ...++--..|.
T Consensus 386 ~~dr~l-is--e~~~its~~iS~d~k~~LvnL~~-------------qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 386 RVDRGL-IS--EEQPITSFSISKDGKLALVNLQD-------------QEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred hhhhcc-cc--ccCceeEEEEcCCCcEEEEEccc-------------CeeEEeecc--hhhHHHHhhcccccceEEEecc
Confidence 543322 11 11112233444568888876543 567889887 44433322 22222222333
Q ss_pred -eCCEEEEEeCccCccccccceEEEeeccccce
Q psy9754 251 -LSSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282 (306)
Q Consensus 251 -~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W 282 (306)
..+.-|+..|... ..||+|+..+++=
T Consensus 448 gg~~~~fiaSGSED------~kvyIWhr~sgkl 474 (519)
T KOG0293|consen 448 GGGNDKFIASGSED------SKVYIWHRISGKL 474 (519)
T ss_pred CCCCcceEEecCCC------ceEEEEEccCCce
Confidence 2333555555443 6899988877653
No 218
>KOG0281|consensus
Probab=41.76 E-value=1.4e+02 Score=25.53 Aligned_cols=79 Identities=13% Similarity=0.276 Sum_probs=48.4
Q ss_pred ceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcc-cccCCcceeEEE
Q psy9754 114 SSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLA-TKLRYPRYLATL 192 (306)
Q Consensus 114 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~~~~~~~~~~~ 192 (306)
..+-+++..+... +..+..-+.+-++..+++++.|-|..+ +.+..+|.+.+..-++- +.....| .
T Consensus 340 RTikvW~~st~ef--vRtl~gHkRGIAClQYr~rlvVSGSSD--------ntIRlwdi~~G~cLRvLeGHEeLvR----c 405 (499)
T KOG0281|consen 340 RTIKVWSTSTCEF--VRTLNGHKRGIACLQYRDRLVVSGSSD--------NTIRLWDIECGACLRVLEGHEELVR----C 405 (499)
T ss_pred ceEEEEeccceee--ehhhhcccccceehhccCeEEEecCCC--------ceEEEEeccccHHHHHHhchHHhhh----h
Confidence 4455566665554 344556667778888999988776433 57888888877654441 1111223 3
Q ss_pred EEEeCCEEEEEcCCC
Q psy9754 193 VSVNNEKLYIIGGAS 207 (306)
Q Consensus 193 ~~~~~~~iyi~GG~~ 207 (306)
+.++ ++-.+-|++.
T Consensus 406 iRFd-~krIVSGaYD 419 (499)
T KOG0281|consen 406 IRFD-NKRIVSGAYD 419 (499)
T ss_pred eeec-Cceeeecccc
Confidence 4555 6666788875
No 219
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=41.44 E-value=53 Score=16.98 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=11.3
Q ss_pred CCEEEEEeCccCccccccceEEEee
Q psy9754 252 SSQILIIGGVTTVYKRTLKSVECWC 276 (306)
Q Consensus 252 ~~~i~v~GG~~~~~~~~~~~~~~yd 276 (306)
++..++.|+.+ +.+.+||
T Consensus 22 ~~~~~~s~~~D-------~~i~vwd 39 (39)
T PF00400_consen 22 DGNFLASGSSD-------GTIRVWD 39 (39)
T ss_dssp TSSEEEEEETT-------SEEEEEE
T ss_pred ccccceeeCCC-------CEEEEEC
Confidence 45677777766 4566664
No 220
>KOG1446|consensus
Probab=37.61 E-value=2.5e+02 Score=23.61 Aligned_cols=184 Identities=10% Similarity=0.080 Sum_probs=0.0
Q ss_pred ceEEEEeCCCCCeeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEECC
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEIND 146 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~ 146 (306)
+++-.++..+|+.-+.-+-..-+...-.+.-.+..++-++.+ +.+..+|....+ ...-|.......++.--.|
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D-----~tvrLWDlR~~~--cqg~l~~~~~pi~AfDp~G 152 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLD-----KTVRLWDLRVKK--CQGLLNLSGRPIAAFDPEG 152 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccC-----CeEEeeEecCCC--CceEEecCCCcceeECCCC
Q ss_pred EEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEE
Q psy9754 147 KIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVF 226 (306)
Q Consensus 147 ~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y 226 (306)
-|+.++-....-. +-++..||-.--+-..+ ......+...--..-+ |+..++.-.. ..+++.
T Consensus 153 LifA~~~~~~~Ik---LyD~Rs~dkgPF~tf~i-~~~~~~ew~~l~FS~d-GK~iLlsT~~-------------s~~~~l 214 (311)
T KOG1446|consen 153 LIFALANGSELIK---LYDLRSFDKGPFTTFSI-TDNDEAEWTDLEFSPD-GKSILLSTNA-------------SFIYLL 214 (311)
T ss_pred cEEEEecCCCeEE---EEEecccCCCCceeEcc-CCCCccceeeeEEcCC-CCEEEEEeCC-------------CcEEEE
Q ss_pred ECCCCceE-ecccCCcccccceeeee-CCEEEEEeCccCccccccceEEEeeccccc
Q psy9754 227 VSNEKEWK-FVTELVVPRHAHSASVL-SSQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 227 ~~~~~~W~-~~~~~p~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
|--.++-. .....|.....+..+.. -+--||++|.+. .++++|+.+++.
T Consensus 215 DAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~d------g~i~vw~~~tg~ 265 (311)
T KOG1446|consen 215 DAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDD------GTIHVWNLETGK 265 (311)
T ss_pred EccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCC------CcEEEEEcCCCc
No 221
>KOG0308|consensus
Probab=36.83 E-value=3.7e+02 Score=25.34 Aligned_cols=95 Identities=18% Similarity=0.236 Sum_probs=48.2
Q ss_pred CCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEE------cc-cccC-Cccee-EEEEEEeCCEEEEEcCCCCCCCCCcc
Q psy9754 145 NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTT------LA-TKLR-YPRYL-ATLVSVNNEKLYIIGGASQTDATNTQ 215 (306)
Q Consensus 145 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~------~~-~~~~-~~~~~-~~~~~~~~~~iyi~GG~~~~~~~~~~ 215 (306)
++.+++-||.+ ..+..+|..+..=+. +. ..+. .++.. .+.+.-+.+.+++-||..
T Consensus 129 ~~~lvaSgGLD--------~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte-------- 192 (735)
T KOG0308|consen 129 NNELVASGGLD--------RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE-------- 192 (735)
T ss_pred CceeEEecCCC--------ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc--------
Confidence 66788888865 456666666442111 10 1111 12211 233333346687777765
Q ss_pred cccccceeeEEECCCCceEecccCCcccccceeeee--CCEEEEEeCcc
Q psy9754 216 KMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVL--SSQILIIGGVT 262 (306)
Q Consensus 216 ~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~--~~~i~v~GG~~ 262 (306)
+++..||+.+.+ ++..+..-+...-+..+ +|+-.+-++.+
T Consensus 193 -----k~lr~wDprt~~--kimkLrGHTdNVr~ll~~dDGt~~ls~sSD 234 (735)
T KOG0308|consen 193 -----KDLRLWDPRTCK--KIMKLRGHTDNVRVLLVNDDGTRLLSASSD 234 (735)
T ss_pred -----cceEEecccccc--ceeeeeccccceEEEEEcCCCCeEeecCCC
Confidence 678999997664 22222222222333333 55555555555
No 222
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=36.33 E-value=3.1e+02 Score=24.41 Aligned_cols=55 Identities=13% Similarity=0.092 Sum_probs=30.5
Q ss_pred eeceEEEEeCCCCCeeeCCCC-CCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCC
Q psy9754 65 VSNSVWSFNPNNKQWTQEPNM-TYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAH 124 (306)
Q Consensus 65 ~~~~~~~~d~~t~~W~~~~~~-~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~ 124 (306)
..+.++.+|-.-+---++.-+ +..|. .++-..++..|++-=... +-+.+.|..+-
T Consensus 404 ~~N~vYilDe~lnvvGkltGl~~gERI-YAvRf~gdv~yiVTfrqt----DPlfviDlsNP 459 (603)
T COG4880 404 PVNAVYILDENLNVVGKLTGLAPGERI-YAVRFVGDVLYIVTFRQT----DPLFVIDLSNP 459 (603)
T ss_pred ccceeEEEcCCCcEEEEEeccCCCceE-EEEEEeCceEEEEEEecc----CceEEEEcCCC
Confidence 567888888765554444433 34443 344445777777743222 34555665543
No 223
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=35.47 E-value=1.1e+02 Score=27.19 Aligned_cols=13 Identities=15% Similarity=0.611 Sum_probs=10.8
Q ss_pred ceEEEeeccccce
Q psy9754 270 KSVECWCFDRQAW 282 (306)
Q Consensus 270 ~~~~~yd~~~~~W 282 (306)
+..++||..+++|
T Consensus 307 ~~tlcyD~at~~~ 319 (469)
T PF11134_consen 307 RKTLCYDAATSQW 319 (469)
T ss_pred CceEEEEcccCCc
Confidence 5788999999866
No 224
>KOG0772|consensus
Probab=35.39 E-value=3.5e+02 Score=24.70 Aligned_cols=128 Identities=16% Similarity=0.206 Sum_probs=60.8
Q ss_pred CCccceeeEEE--CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcc--c-----ccceeeEEECCEEEEEcccCCC
Q psy9754 87 YPRKIFSFVSC--LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKI--A-----RMGMAVAEINDKIWIAGGYTGD 157 (306)
Q Consensus 87 ~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~--~-----~~~~~~~~~~~~iyv~GG~~~~ 157 (306)
..|.....|.. ++++ +.+|+.. .++..++. ..|..-+.+.. + -...-+...++.+.+--|.++
T Consensus 315 g~Rv~~tsC~~nrdg~~-iAagc~D----GSIQ~W~~--~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~- 386 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKL-IAAGCLD----GSIQIWDK--GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD- 386 (641)
T ss_pred CcccCceeeecCCCcch-hhhcccC----Cceeeeec--CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC-
Confidence 44666666665 4555 7777665 55666665 33333333321 1 111223345677666655442
Q ss_pred CCCCCCccEEEEeCCC-----CeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCc
Q psy9754 158 KMNPVTDKVECYDPRT-----NTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKE 232 (306)
Q Consensus 158 ~~~~~~~~~~~~d~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~ 232 (306)
.+-++|+.+ +.|+-+ +. +.+. .-++.-.+++|++.|-....+.. ...++.||.. +
T Consensus 387 -------tLKvWDLrq~kkpL~~~tgL-~t-~~~~--tdc~FSPd~kli~TGtS~~~~~~-------~g~L~f~d~~--t 446 (641)
T KOG0772|consen 387 -------TLKVWDLRQFKKPLNVRTGL-PT-PFPG--TDCCFSPDDKLILTGTSAPNGMT-------AGTLFFFDRM--T 446 (641)
T ss_pred -------ceeeeeccccccchhhhcCC-Cc-cCCC--CccccCCCceEEEecccccCCCC-------CceEEEEecc--c
Confidence 333444432 235555 21 1222 12334445777776654332221 2357778764 4
Q ss_pred eEecccCCcc
Q psy9754 233 WKFVTELVVP 242 (306)
Q Consensus 233 W~~~~~~p~~ 242 (306)
...+..++..
T Consensus 447 ~d~v~ki~i~ 456 (641)
T KOG0772|consen 447 LDTVYKIDIS 456 (641)
T ss_pred eeeEEEecCC
Confidence 4444444333
No 225
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=33.76 E-value=2.9e+02 Score=23.35 Aligned_cols=187 Identities=12% Similarity=0.139 Sum_probs=84.4
Q ss_pred eeeEEECCEEEEEccCC-C-C---CCCceeEEEe-CCCCcEEeccCC--------cccccceeeEEECCEEEEEcccCCC
Q psy9754 92 FSFVSCLDKIYAIGGQD-C-K---TLLSSVECYD-PVAHTWEDVAPL--------KIARMGMAVAEINDKIWIAGGYTGD 157 (306)
Q Consensus 92 ~~~~~~~~~iyv~GG~~-~-~---~~~~~~~~~d-~~~~~w~~~~~~--------~~~~~~~~~~~~~~~iyv~GG~~~~ 157 (306)
++++.+++.|+.+.... . . ........+. ....+|+..... ......+++++-+++||++-|....
T Consensus 2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 56788899999886422 1 1 1222222333 445578764311 1122345667779999988664332
Q ss_pred CCCCCCccEEEE--eCCCCeeEEcccccCCc--c-------eeEEEEEEeCCEEEEE-cCCCCCCCCCcccccccceeeE
Q psy9754 158 KMNPVTDKVECY--DPRTNTWTTLATKLRYP--R-------YLATLVSVNNEKLYII-GGASQTDATNTQKMYSVSDLDV 225 (306)
Q Consensus 158 ~~~~~~~~~~~~--d~~~~~W~~~~~~~~~~--~-------~~~~~~~~~~~~iyi~-GG~~~~~~~~~~~~~~~~~~~~ 225 (306)
......-.+..+ +....+|... ..++.. . .+.+.+...++.|++- -+...... ....+.+
T Consensus 82 ~~~~~~~~llLvks~~~g~~W~~~-~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~-------~~~SlIi 153 (310)
T PF13859_consen 82 SAGADDWGLLLVKSTDGGIKWGDT-KSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGD-------GTVSLII 153 (310)
T ss_dssp --SSTTEEEEEEEEESSSSEE----EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT----------EEEEEE
T ss_pred cccccccceeeeeccCCcceeeec-ccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCcc-------ceEEEEE
Confidence 111001122222 3334469775 222111 0 1122233333444321 12222111 0256788
Q ss_pred EECC-CCceEecccCC-cccccceeeee-CCEEEEEeCccCccccccceEEEeeccccceeccCCCCc
Q psy9754 226 FVSN-EKEWKFVTELV-VPRHAHSASVL-SSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLP 290 (306)
Q Consensus 226 y~~~-~~~W~~~~~~p-~~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~p 290 (306)
|..+ ..+|+.-..++ .......++-. +++|+++.-++.. ..+||.-.-...+|++-+..|+
T Consensus 154 YS~d~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g----~rrVYeS~DmG~tWtea~gtls 217 (310)
T PF13859_consen 154 YSTDDGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDG----RRRVYESGDMGTTWTEALGTLS 217 (310)
T ss_dssp EESSTTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS-------EEEESSTTSS-EE-TTTTT
T ss_pred EECCCccceEeccccCCCCcceEEEEeccCCeeEEEEecccc----eEEEEEEcccceehhhccCccc
Confidence 8887 67899766554 44455666667 8899999776642 1355555556778988655554
No 226
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=32.57 E-value=3.6e+02 Score=24.04 Aligned_cols=148 Identities=5% Similarity=-0.085 Sum_probs=69.1
Q ss_pred ceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEE
Q psy9754 114 SSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLV 193 (306)
Q Consensus 114 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~ 193 (306)
..+++.|..++.-..+...+..-..+...--+.+|.+..-.+ . .-.++.+|....+-.++ ....-.-...+..
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd-g-----~~~iy~~dl~~~~~~~L-t~~~gi~~~Ps~s 290 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD-G-----SPDIYLMDLDGKNLPRL-TNGFGINTSPSWS 290 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC-C-----CccEEEEcCCCCcceec-ccCCccccCccCC
Confidence 445556666655444443322222222222333444433222 1 35799999988874444 2222111222222
Q ss_pred EEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEE
Q psy9754 194 SVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVE 273 (306)
Q Consensus 194 ~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~ 273 (306)
..+ .+|+....... . ..+++||++...=+.+..-... ..+-...-++..+++-+... +. .++.
T Consensus 291 pdG-~~ivf~Sdr~G---~--------p~I~~~~~~g~~~~riT~~~~~-~~~p~~SpdG~~i~~~~~~~---g~-~~i~ 353 (425)
T COG0823 291 PDG-SKIVFTSDRGG---R--------PQIYLYDLEGSQVTRLTFSGGG-NSNPVWSPDGDKIVFESSSG---GQ-WDID 353 (425)
T ss_pred CCC-CEEEEEeCCCC---C--------cceEEECCCCCceeEeeccCCC-CcCccCCCCCCEEEEEeccC---Cc-eeeE
Confidence 222 45554422211 1 4789999987765544421111 11222223555444433221 11 5688
Q ss_pred Eeeccccc-eecc
Q psy9754 274 CWCFDRQA-WIKG 285 (306)
Q Consensus 274 ~yd~~~~~-W~~~ 285 (306)
.+|+.++. |..+
T Consensus 354 ~~~~~~~~~~~~l 366 (425)
T COG0823 354 KNDLASGGKIRIL 366 (425)
T ss_pred EeccCCCCcEEEc
Confidence 88887666 7553
No 227
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=31.75 E-value=75 Score=15.86 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=12.4
Q ss_pred eeEEEEEEeCCEEEEEcC
Q psy9754 188 YLATLVSVNNEKLYIIGG 205 (306)
Q Consensus 188 ~~~~~~~~~~~~iyi~GG 205 (306)
..|+++...++++|.+|-
T Consensus 8 ~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 8 GYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp SSEEEEEE-TTEEEEEE-
T ss_pred CCEEEEEEcCCCEEEEcC
Confidence 346777777799999984
No 228
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=31.17 E-value=2.9e+02 Score=22.42 Aligned_cols=49 Identities=10% Similarity=-0.022 Sum_probs=29.8
Q ss_pred CCe-eeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCC
Q psy9754 77 KQW-TQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPL 132 (306)
Q Consensus 77 ~~W-~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~ 132 (306)
+++ ....++..+..-..++..++.|++.-. +..+.+|+.+..-+.+.++
T Consensus 126 ~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~-------~~f~~idl~~~~~~~l~~~ 175 (275)
T PF00780_consen 126 NSFSKLLKEISLPDPPSSIAFLGNKICVGTS-------KGFYLIDLNTGSPSELLDP 175 (275)
T ss_pred ccccceeEEEEcCCCcEEEEEeCCEEEEEeC-------CceEEEecCCCCceEEeCc
Confidence 445 455555555555556666677666632 5567788887776666543
No 229
>KOG0286|consensus
Probab=30.78 E-value=3.2e+02 Score=22.91 Aligned_cols=184 Identities=11% Similarity=0.132 Sum_probs=90.3
Q ss_pred EEEeCccCcCCCCcccceeeceEEEEeCCCCCe----eeCCCCCCCccceeeEEE-C-CEEEEEccCCCCCCCceeEEEe
Q psy9754 47 NSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQW----TQEPNMTYPRKIFSFVSC-L-DKIYAIGGQDCKTLLSSVECYD 120 (306)
Q Consensus 47 i~v~GG~~~~~~~~~~~~~~~~~~~~d~~t~~W----~~~~~~~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~d 120 (306)
.+-.||.+ +..-.|+..+..= .....++.-..+.+++.. + +.|.-..|- ..+..+|
T Consensus 111 ~VAcGGLd------------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD------~TCalWD 172 (343)
T KOG0286|consen 111 FVACGGLD------------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD------MTCALWD 172 (343)
T ss_pred eEEecCcC------------ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC------ceEEEEE
Confidence 66667764 3444566554321 122233433444455544 4 444444341 4566788
Q ss_pred CCCCcEEeccCCcccccc--eeeE--EECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEe
Q psy9754 121 PVAHTWEDVAPLKIARMG--MAVA--EINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVN 196 (306)
Q Consensus 121 ~~~~~w~~~~~~~~~~~~--~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~ 196 (306)
.++.+-... +. .+.+ .+.. -.+...||-||.+. ....+|.....-.+. ..-...-. .++..+.
T Consensus 173 ie~g~~~~~--f~-GH~gDV~slsl~p~~~ntFvSg~cD~--------~aklWD~R~~~c~qt-F~ghesDI-Nsv~ffP 239 (343)
T KOG0286|consen 173 IETGQQTQV--FH-GHTGDVMSLSLSPSDGNTFVSGGCDK--------SAKLWDVRSGQCVQT-FEGHESDI-NSVRFFP 239 (343)
T ss_pred cccceEEEE--ec-CCcccEEEEecCCCCCCeEEeccccc--------ceeeeeccCcceeEe-eccccccc-ceEEEcc
Confidence 888874322 11 1111 1111 12678899888663 234556555543332 11111111 2344445
Q ss_pred CCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeee--eCCEEEEEeCccCccccccceEEE
Q psy9754 197 NEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASV--LSSQILIIGGVTTVYKRTLKSVEC 274 (306)
Q Consensus 197 ~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~ 274 (306)
++.-+..|... .....||+..+.=-.+=+-+........+. .-|++++.|..+ ..+.+
T Consensus 240 ~G~afatGSDD-------------~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d-------~~c~v 299 (343)
T KOG0286|consen 240 SGDAFATGSDD-------------ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD-------FTCNV 299 (343)
T ss_pred CCCeeeecCCC-------------ceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecC-------CceeE
Confidence 56666665443 456788888765332222122222233333 378888888666 46777
Q ss_pred eeccccc
Q psy9754 275 WCFDRQA 281 (306)
Q Consensus 275 yd~~~~~ 281 (306)
||.-..+
T Consensus 300 WDtlk~e 306 (343)
T KOG0286|consen 300 WDTLKGE 306 (343)
T ss_pred eeccccc
Confidence 7764433
No 230
>KOG0640|consensus
Probab=29.56 E-value=3.5e+02 Score=22.93 Aligned_cols=85 Identities=12% Similarity=0.127 Sum_probs=43.5
Q ss_pred ceeEEEeCCCCcEEeccCCc-ccccceeeEE-E--CCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCccee
Q psy9754 114 SSVECYDPVAHTWEDVAPLK-IARMGMAVAE-I--NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYL 189 (306)
Q Consensus 114 ~~~~~~d~~~~~w~~~~~~~-~~~~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~ 189 (306)
..+-.||..+-+-= ++.-| ..+.+.-..+ + .++||+.|-++ +.+-.+|-..+...+.....-..-.-
T Consensus 238 p~~rlYdv~T~Qcf-vsanPd~qht~ai~~V~Ys~t~~lYvTaSkD--------G~IklwDGVS~rCv~t~~~AH~gsev 308 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCF-VSANPDDQHTGAITQVRYSSTGSLYVTASKD--------GAIKLWDGVSNRCVRTIGNAHGGSEV 308 (430)
T ss_pred CceeEEeccceeEe-eecCcccccccceeEEEecCCccEEEEeccC--------CcEEeeccccHHHHHHHHhhcCCcee
Confidence 44556777776632 22223 3333333332 2 57999998665 34556666555543321222222233
Q ss_pred EEEEEEeCCEEEEEcCCC
Q psy9754 190 ATLVSVNNEKLYIIGGAS 207 (306)
Q Consensus 190 ~~~~~~~~~~iyi~GG~~ 207 (306)
++++...+++.++..|..
T Consensus 309 cSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 309 CSAVFTKNGKYILSSGKD 326 (430)
T ss_pred eeEEEccCCeEEeecCCc
Confidence 445555557777766764
No 231
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=29.42 E-value=3.2e+02 Score=22.49 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=36.9
Q ss_pred eeeEEECCEEEEEc-cCCCCCCCceeEEEeCCCCcEEeccCC-cccccceeeEEECCEEEEEcc
Q psy9754 92 FSFVSCLDKIYAIG-GQDCKTLLSSVECYDPVAHTWEDVAPL-KIARMGMAVAEINDKIWIAGG 153 (306)
Q Consensus 92 ~~~~~~~~~iyv~G-G~~~~~~~~~~~~~d~~~~~w~~~~~~-~~~~~~~~~~~~~~~iyv~GG 153 (306)
.++-.+++++|+.- |....+.-+.+.+-+.....|+.+.-. ..-....-.+.+++.||+||-
T Consensus 194 PCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 194 PCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp EEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE
T ss_pred chhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEec
Confidence 34455699999984 544445557777888888889877532 233444455678999999985
No 232
>KOG0647|consensus
Probab=28.77 E-value=3.6e+02 Score=22.77 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=29.3
Q ss_pred ccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCC
Q psy9754 164 DKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEK 231 (306)
Q Consensus 164 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~ 231 (306)
+.+-.+|+++++-+.+...-...|.. ..+.-..-.+++.|.+. +.+-.+|+.+.
T Consensus 94 k~~k~wDL~S~Q~~~v~~Hd~pvkt~-~wv~~~~~~cl~TGSWD-------------KTlKfWD~R~~ 147 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAHDAPVKTC-HWVPGMNYQCLVTGSWD-------------KTLKFWDTRSS 147 (347)
T ss_pred CceEEEEccCCCeeeeeecccceeEE-EEecCCCcceeEecccc-------------cceeecccCCC
Confidence 56788999999888873222222322 22222213455555554 55666777643
No 233
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=28.36 E-value=2.4e+02 Score=20.55 Aligned_cols=56 Identities=20% Similarity=0.321 Sum_probs=33.3
Q ss_pred ceeeEEECCCCceEecccCCcccccceeeee---CCEEEEEeCccCccccccceEEEeeccccc--eec
Q psy9754 221 SDLDVFVSNEKEWKFVTELVVPRHAHSASVL---SSQILIIGGVTTVYKRTLKSVECWCFDRQA--WIK 284 (306)
Q Consensus 221 ~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~--W~~ 284 (306)
..+..||..++.=....++|.+-....+..+ ...+.++||.. .+.-||-+.++ |+.
T Consensus 73 t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGnc--------si~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 73 TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNC--------SIQGFDYEGNEIFWTV 133 (136)
T ss_pred ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceE--------EEEEeCCCCcEEEEEe
Confidence 5689999988764444455544322222222 56899999977 35566665443 543
No 234
>KOG0308|consensus
Probab=27.61 E-value=5.3e+02 Score=24.36 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=38.1
Q ss_pred CCEEEEEccCCCCCCCceeEEEeCCCCcEEe------c--cCCc-ccccceeeEEE--CCEEEEEcccCCCCCCCCCccE
Q psy9754 98 LDKIYAIGGQDCKTLLSSVECYDPVAHTWED------V--APLK-IARMGMAVAEI--NDKIWIAGGYTGDKMNPVTDKV 166 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~------~--~~~~-~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 166 (306)
++.+++-||.+. .+.++|..+..-+. + .+++ .++..-.+... .+.|++-||.. +.+
T Consensus 129 ~~~lvaSgGLD~-----~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte--------k~l 195 (735)
T KOG0308|consen 129 NNELVASGGLDR-----KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE--------KDL 195 (735)
T ss_pred CceeEEecCCCc-----cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc--------cce
Confidence 678888888774 46677777553211 1 2233 23333222222 34577777754 568
Q ss_pred EEEeCCCCe
Q psy9754 167 ECYDPRTNT 175 (306)
Q Consensus 167 ~~~d~~~~~ 175 (306)
..||+.+.+
T Consensus 196 r~wDprt~~ 204 (735)
T KOG0308|consen 196 RLWDPRTCK 204 (735)
T ss_pred EEecccccc
Confidence 889988774
No 235
>KOG0282|consensus
Probab=26.81 E-value=3.8e+02 Score=24.13 Aligned_cols=51 Identities=14% Similarity=0.349 Sum_probs=27.2
Q ss_pred CCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEe-C-CEEEEEcCCC
Q psy9754 145 NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVN-N-EKLYIIGGAS 207 (306)
Q Consensus 145 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~-~-~~iyi~GG~~ 207 (306)
.+.-|+..+++ ..+-.+|++|++-... ...... ..++..+ + .+++++||.+
T Consensus 269 ~g~~fLS~sfD--------~~lKlwDtETG~~~~~-f~~~~~---~~cvkf~pd~~n~fl~G~sd 321 (503)
T KOG0282|consen 269 CGTSFLSASFD--------RFLKLWDTETGQVLSR-FHLDKV---PTCVKFHPDNQNIFLVGGSD 321 (503)
T ss_pred cCCeeeeeecc--------eeeeeeccccceEEEE-EecCCC---ceeeecCCCCCcEEEEecCC
Confidence 34445555544 3566788888876543 111111 1222222 2 4888998875
No 236
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=26.52 E-value=4.2e+02 Score=22.79 Aligned_cols=168 Identities=8% Similarity=0.043 Sum_probs=83.8
Q ss_pred CEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCccccc--ceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCC-e
Q psy9754 99 DKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARM--GMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTN-T 175 (306)
Q Consensus 99 ~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~-~ 175 (306)
..+|++...++. .--..+.+|+.+++.+.+...+..-. .+.++..++++.+..-+. .+.+.+|.++++ .
T Consensus 52 ~~LY~v~~~~~~-ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~-------~g~v~v~p~~~dG~ 123 (346)
T COG2706 52 RHLYVVNEPGEE-GGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH-------SGSVSVYPLQADGS 123 (346)
T ss_pred CEEEEEEecCCc-CcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc-------CceEEEEEcccCCc
Confidence 468888665332 22445667888888888865443322 333333445444433322 466777777553 2
Q ss_pred -eEEc---c--cccCCcc---e-eEEEEEEeCCE-EEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCc--c
Q psy9754 176 -WTTL---A--TKLRYPR---Y-LATLVSVNNEK-LYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVV--P 242 (306)
Q Consensus 176 -W~~~---~--~~~~~~~---~-~~~~~~~~~~~-iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~--~ 242 (306)
|..+ . ...|.+| . .|.+....+++ |++..=. ...+..|+.+.+..++..+... +
T Consensus 124 l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-------------~Dri~~y~~~dg~L~~~~~~~v~~G 190 (346)
T COG2706 124 LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-------------TDRIFLYDLDDGKLTPADPAEVKPG 190 (346)
T ss_pred cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-------------CceEEEEEcccCccccccccccCCC
Confidence 2221 1 1112233 1 22333333353 4433211 2567889988777775543322 1
Q ss_pred c-ccceeeee-CCEEEEEeCccCccccccceEEEeeccccceecc--CCCCccc
Q psy9754 243 R-HAHSASVL-SSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKG--VSGLPAT 292 (306)
Q Consensus 243 ~-~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~--~~~~p~~ 292 (306)
- -.|-+..- +.-.|++..-+.. -.++.||....+-+++ +..||..
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~st-----V~v~~y~~~~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNST-----VDVLEYNPAVGKFEELQTIDTLPED 239 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCE-----EEEEEEcCCCceEEEeeeeccCccc
Confidence 1 11222222 4467888765531 3566666666676553 4455643
No 237
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=25.95 E-value=4.1e+02 Score=22.48 Aligned_cols=172 Identities=11% Similarity=0.061 Sum_probs=86.8
Q ss_pred eceEEEEeCCCCCe-eeCCC----CCCCccceeeEEECCEEEEEccC------CCCCCCceeEEEeCCCCcEEeccCC-c
Q psy9754 66 SNSVWSFNPNNKQW-TQEPN----MTYPRKIFSFVSCLDKIYAIGGQ------DCKTLLSSVECYDPVAHTWEDVAPL-K 133 (306)
Q Consensus 66 ~~~~~~~d~~t~~W-~~~~~----~~~~~~~~~~~~~~~~iyv~GG~------~~~~~~~~~~~~d~~~~~w~~~~~~-~ 133 (306)
...+++++++++.- +.+.+ .+..|.+=..+.-++.+|+---. ........+|++|+. .+..++..- .
T Consensus 84 ~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~ 162 (307)
T COG3386 84 EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDL 162 (307)
T ss_pred ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcE
Confidence 34566777654443 44432 23445555566667888876433 222445689999994 444444332 2
Q ss_pred ccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCC--------eeEEcccccCCcceeEEEEEEeCCEEEEEcC
Q psy9754 134 IARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTN--------TWTTLATKLRYPRYLATLVSVNNEKLYIIGG 205 (306)
Q Consensus 134 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~--------~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG 205 (306)
..-.+.+..--+..+|+.-= ..+.+++|+.... .+... ..... .--++++..++.||+...
T Consensus 163 ~~~NGla~SpDg~tly~aDT--------~~~~i~r~~~d~~~g~~~~~~~~~~~--~~~~G-~PDG~~vDadG~lw~~a~ 231 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADT--------PANRIHRYDLDPATGPIGGRRGFVDF--DEEPG-LPDGMAVDADGNLWVAAV 231 (307)
T ss_pred EecCceEECCCCCEEEEEeC--------CCCeEEEEecCcccCccCCcceEEEc--cCCCC-CCCceEEeCCCCEEEecc
Confidence 22222222223446666521 1367777766531 11111 11111 112345555789997554
Q ss_pred CCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeC---CEEEEEeCccC
Q psy9754 206 ASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLS---SQILIIGGVTT 263 (306)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~---~~i~v~GG~~~ 263 (306)
... ..+.+|+++ .+-...-.+|.. .-..++..+ +.|||......
T Consensus 232 ~~g------------~~v~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 232 WGG------------GRVVRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITSARSG 278 (307)
T ss_pred cCC------------ceEEEECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEecCCC
Confidence 432 367899987 433333344432 222333333 68999876654
No 238
>KOG0319|consensus
Probab=25.92 E-value=6e+02 Score=24.39 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=30.6
Q ss_pred CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEE-----CCEEEEEcccCCCCCCCCCccEEEEeCC
Q psy9754 98 LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEI-----NDKIWIAGGYTGDKMNPVTDKVECYDPR 172 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~~~~~d~~ 172 (306)
++.-.+.+|.+ +-+.++|..+.+-.+.-|......+....-. +..++..|| ...+..+|++
T Consensus 203 d~~~~ls~~RD-----kvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~---------~g~~~~~d~e 268 (775)
T KOG0319|consen 203 DSLELLSVGRD-----KVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGG---------SGVVQYWDSE 268 (775)
T ss_pred CCceEEEeccC-----cEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecC---------CceEEEEecc
Confidence 34444444543 5577788844443333333333332222111 135666666 3456667766
Q ss_pred CCe
Q psy9754 173 TNT 175 (306)
Q Consensus 173 ~~~ 175 (306)
+.+
T Consensus 269 s~~ 271 (775)
T KOG0319|consen 269 SGK 271 (775)
T ss_pred cch
Confidence 655
No 239
>PTZ00334 trans-sialidase; Provisional
Probab=25.57 E-value=6.4e+02 Score=24.65 Aligned_cols=66 Identities=9% Similarity=0.118 Sum_probs=41.8
Q ss_pred ceeeEEECCCCceEecccCCcc-cccceeeeeC-CEEEEEeCccCccccccceEEEeeccccceeccCCCCc
Q psy9754 221 SDLDVFVSNEKEWKFVTELVVP-RHAHSASVLS-SQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLP 290 (306)
Q Consensus 221 ~~~~~y~~~~~~W~~~~~~p~~-~~~~~~~~~~-~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~p 290 (306)
..+.+|..++..|+.-..++.. .....++-.+ ++|+++-.+.... .+||.-.-....|++-+..|+
T Consensus 287 vslIiYS~d~g~W~ls~g~s~~gC~~P~I~EWe~gkLlM~t~C~dG~----RrVYES~DmG~tWtEAlGTLs 354 (780)
T PTZ00334 287 VSLIIYSSATESGNLSKGMSADGCSDPSVVEWKEGKLMMMTACDDGR----RRVYESGDKGDSWTEALGTLS 354 (780)
T ss_pred EEEEEEecCCCCeEEcCCCCCCCCCCCEEEEEcCCeEEEEEEeCCCC----EEEEEECCCCCChhhCCCccc
Confidence 5678898888889865555433 4455566664 8998876665321 345554455677877665553
No 240
>KOG0307|consensus
Probab=25.22 E-value=7.2e+02 Score=25.12 Aligned_cols=97 Identities=14% Similarity=0.224 Sum_probs=46.3
Q ss_pred ccEEEEeCCCCe-eEEcccccCCcceeEEEEEEe---CCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccC
Q psy9754 164 DKVECYDPRTNT-WTTLATKLRYPRYLATLVSVN---NEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTEL 239 (306)
Q Consensus 164 ~~~~~~d~~~~~-W~~~~~~~~~~~~~~~~~~~~---~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~ 239 (306)
+.+.++|+..++ -..+ .. ..+|..++.+..+ ..+|.+.-+.... ..+..+|+..-. ..+..+
T Consensus 184 g~~~iWDlr~~~pii~l-s~-~~~~~~~S~l~WhP~~aTql~~As~dd~~-----------PviqlWDlR~as-sP~k~~ 249 (1049)
T KOG0307|consen 184 GRAVIWDLRKKKPIIKL-SD-TPGRMHCSVLAWHPDHATQLLVASGDDSA-----------PVIQLWDLRFAS-SPLKIL 249 (1049)
T ss_pred CCceeccccCCCccccc-cc-CCCccceeeeeeCCCCceeeeeecCCCCC-----------ceeEeecccccC-Cchhhh
Confidence 456778877662 2233 22 2344555666666 2456665554322 345556643211 111111
Q ss_pred C-cccccceeee--eCCEEEEEeCccCccccccceEEEeeccccc
Q psy9754 240 V-VPRHAHSASV--LSSQILIIGGVTTVYKRTLKSVECWCFDRQA 281 (306)
Q Consensus 240 p-~~~~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~ 281 (306)
. ..|.--++.. -|.++++-.|++ +++.++++++.+
T Consensus 250 ~~H~~GilslsWc~~D~~lllSsgkD-------~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 250 EGHQRGILSLSWCPQDPRLLLSSGKD-------NRIICWNPNTGE 287 (1049)
T ss_pred cccccceeeeccCCCCchhhhcccCC-------CCeeEecCCCce
Confidence 0 0111111111 155777777777 567777777743
No 241
>KOG0647|consensus
Probab=25.05 E-value=4.2e+02 Score=22.36 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=20.6
Q ss_pred CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCccc
Q psy9754 98 LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIA 135 (306)
Q Consensus 98 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~ 135 (306)
++.....|+.+ +.+-++|+.+++-.++.-...+
T Consensus 83 dgskVf~g~~D-----k~~k~wDL~S~Q~~~v~~Hd~p 115 (347)
T KOG0647|consen 83 DGSKVFSGGCD-----KQAKLWDLASGQVSQVAAHDAP 115 (347)
T ss_pred CCceEEeeccC-----CceEEEEccCCCeeeeeecccc
Confidence 44444445554 4466789999987777654433
No 242
>KOG0274|consensus
Probab=24.94 E-value=5.6e+02 Score=23.75 Aligned_cols=136 Identities=15% Similarity=0.266 Sum_probs=73.0
Q ss_pred ceeEEEeCCCCcEEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEE
Q psy9754 114 SSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLV 193 (306)
Q Consensus 114 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~ 193 (306)
..+.+++..+++--.+-.- ......++.+++.+.|.|..+ ..+-++|+.+.+.-.--.. -..|. ..+
T Consensus 311 ~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~~~~lvsgs~d--------~~v~VW~~~~~~cl~sl~g-H~~~V--~sl 377 (537)
T KOG0274|consen 311 NTVKVWDVTNGACLNLLRG--HTGPVNCVQLDEPLLVSGSYD--------GTVKVWDPRTGKCLKSLSG-HTGRV--YSL 377 (537)
T ss_pred ceEEEEeccCcceEEEecc--ccccEEEEEecCCEEEEEecC--------ceEEEEEhhhceeeeeecC-CcceE--EEE
Confidence 5567777776654333221 111112334566666766544 3678888886665332011 12222 122
Q ss_pred EEeCC-EEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceE
Q psy9754 194 SVNNE-KLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSV 272 (306)
Q Consensus 194 ~~~~~-~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 272 (306)
.++ + ..++-|+.. ..+.++|+.+.. +-+..++..........+.+++++-+..+ ..+
T Consensus 378 ~~~-~~~~~~Sgs~D-------------~~IkvWdl~~~~-~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD-------~~I 435 (537)
T KOG0274|consen 378 IVD-SENRLLSGSLD-------------TTIKVWDLRTKR-KCIHTLQGHTSLVSSLLLRDNFLVSSSAD-------GTI 435 (537)
T ss_pred Eec-CcceEEeeeec-------------cceEeecCCchh-hhhhhhcCCcccccccccccceeEecccc-------ccE
Confidence 334 4 555555554 457888887664 33333333333333334467777777666 468
Q ss_pred EEeeccccceec
Q psy9754 273 ECWCFDRQAWIK 284 (306)
Q Consensus 273 ~~yd~~~~~W~~ 284 (306)
.+||.++++-..
T Consensus 436 k~WD~~~~~~~~ 447 (537)
T KOG0274|consen 436 KLWDAEEGECLR 447 (537)
T ss_pred EEeecccCceee
Confidence 888888877644
No 243
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=24.76 E-value=5e+02 Score=23.16 Aligned_cols=149 Identities=12% Similarity=-0.021 Sum_probs=73.2
Q ss_pred ceEEEEeCCCCCeeeCCCCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEECC
Q psy9754 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEIND 146 (306)
Q Consensus 67 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~ 146 (306)
..++..++.+++=..+...+..-..+... -+++-+++-...+ ...++|.+|..+++-.++......-......--+.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fs-pDG~~l~f~~~rd--g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFS-PDGSKLAFSSSRD--GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCC-CCCCEEEEEECCC--CCccEEEEcCCCCcceecccCCccccCccCCCCCC
Confidence 45666666666544443322211111111 2333333322221 34778999999888444433332222223333345
Q ss_pred EEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEE
Q psy9754 147 KIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVF 226 (306)
Q Consensus 147 ~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y 226 (306)
+|+......+ ...++++|++..+=+++ ..-...... -...- +++.+++-+.... . .++..+
T Consensus 295 ~ivf~Sdr~G------~p~I~~~~~~g~~~~ri-T~~~~~~~~-p~~Sp-dG~~i~~~~~~~g--~--------~~i~~~ 355 (425)
T COG0823 295 KIVFTSDRGG------RPQIYLYDLEGSQVTRL-TFSGGGNSN-PVWSP-DGDKIVFESSSGG--Q--------WDIDKN 355 (425)
T ss_pred EEEEEeCCCC------CcceEEECCCCCceeEe-eccCCCCcC-ccCCC-CCCEEEEEeccCC--c--------eeeEEe
Confidence 6666633332 35899999998876666 222112211 11222 3444444332211 0 567889
Q ss_pred ECCCCc-eEecc
Q psy9754 227 VSNEKE-WKFVT 237 (306)
Q Consensus 227 ~~~~~~-W~~~~ 237 (306)
|+.++. |..+.
T Consensus 356 ~~~~~~~~~~lt 367 (425)
T COG0823 356 DLASGGKIRILT 367 (425)
T ss_pred ccCCCCcEEEcc
Confidence 888777 77665
No 244
>KOG4378|consensus
Probab=24.41 E-value=2.7e+02 Score=25.26 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=35.0
Q ss_pred eeEEECCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcccccceeeEEE-CCEEEEEcccCCCCCCCCCccEEEEeC
Q psy9754 93 SFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEI-NDKIWIAGGYTGDKMNPVTDKVECYDP 171 (306)
Q Consensus 93 ~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~d~ 171 (306)
+.+-.+++|++-=|.+ ..+++||.....-... +....-..+++.. +|.+.++| .. ..+++.||.
T Consensus 215 cfspsne~l~vsVG~D-----kki~~yD~~s~~s~~~--l~y~~Plstvaf~~~G~~L~aG-~s-------~G~~i~YD~ 279 (673)
T KOG4378|consen 215 CFSPSNEALLVSVGYD-----KKINIYDIRSQASTDR--LTYSHPLSTVAFSECGTYLCAG-NS-------KGELIAYDM 279 (673)
T ss_pred eecCCccceEEEeccc-----ceEEEeecccccccce--eeecCCcceeeecCCceEEEee-cC-------CceEEEEec
Confidence 3334578888887766 5688899886553221 1111111233333 34444444 33 356777775
Q ss_pred CC
Q psy9754 172 RT 173 (306)
Q Consensus 172 ~~ 173 (306)
..
T Consensus 280 R~ 281 (673)
T KOG4378|consen 280 RS 281 (673)
T ss_pred cc
Confidence 53
No 245
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=23.61 E-value=3.6e+02 Score=20.99 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=40.1
Q ss_pred CCCceeEEEeCCCCcEEeccCCcc-ccccee-eEEE-CCEE-EEEcccCCCCCCCCCccEEEEeCCCCeeEEc
Q psy9754 111 TLLSSVECYDPVAHTWEDVAPLKI-ARMGMA-VAEI-NDKI-WIAGGYTGDKMNPVTDKVECYDPRTNTWTTL 179 (306)
Q Consensus 111 ~~~~~~~~~d~~~~~w~~~~~~~~-~~~~~~-~~~~-~~~i-yv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~ 179 (306)
.....+|++|..++.|..+..-+. ....+- +.=+ +..| +++| ...+... --+.+++|++.++.-+.+
T Consensus 85 EgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG-~a~GTvS-~GGnLy~~nl~tg~~~~l 155 (200)
T PF15525_consen 85 EGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIG-YAHGTVS-KGGNLYKYNLNTGNLTEL 155 (200)
T ss_pred ccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEc-cccceEc-cCCeEEEEEccCCceeEe
Confidence 667889999999998876532222 122222 2222 3444 5555 2222211 136899999999998888
No 246
>KOG2315|consensus
Probab=23.45 E-value=5.9e+02 Score=23.47 Aligned_cols=64 Identities=16% Similarity=0.268 Sum_probs=41.0
Q ss_pred CCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceee
Q psy9754 145 NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLD 224 (306)
Q Consensus 145 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~ 224 (306)
...+-|+-|+. -.++..||+.-+--..+ +. -||. ++..-..++|+++.|..+.. .+++
T Consensus 282 ~~EF~VvyGfM-------PAkvtifnlr~~~v~df-~e--gpRN--~~~fnp~g~ii~lAGFGNL~----------G~mE 339 (566)
T KOG2315|consen 282 GREFAVVYGFM-------PAKVTIFNLRGKPVFDF-PE--GPRN--TAFFNPHGNIILLAGFGNLP----------GDME 339 (566)
T ss_pred CCEEEEEEecc-------cceEEEEcCCCCEeEeC-CC--CCcc--ceEECCCCCEEEEeecCCCC----------CceE
Confidence 44566666655 35778898887766666 33 2332 22233348888888876543 5789
Q ss_pred EEECCC
Q psy9754 225 VFVSNE 230 (306)
Q Consensus 225 ~y~~~~ 230 (306)
++|..+
T Consensus 340 vwDv~n 345 (566)
T KOG2315|consen 340 VWDVPN 345 (566)
T ss_pred EEeccc
Confidence 998876
No 247
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=23.18 E-value=4.8e+02 Score=22.30 Aligned_cols=135 Identities=15% Similarity=0.200 Sum_probs=0.0
Q ss_pred eeeEEECCEEEEEccCCCCCCCceeEEEeCCCCc---EE--eccCCcccccce--eeEEECCEEEE---------EcccC
Q psy9754 92 FSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT---WE--DVAPLKIARMGM--AVAEINDKIWI---------AGGYT 155 (306)
Q Consensus 92 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~---w~--~~~~~~~~~~~~--~~~~~~~~iyv---------~GG~~ 155 (306)
|-++..++.++++ +...+.+..+++.-.- |+ -+..+-.+-.+| ++++.+++... .+|+.
T Consensus 106 Hdia~~~~~l~fV-----NT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR 180 (335)
T TIGR03032 106 HDLALGAGRLLFV-----NTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWR 180 (335)
T ss_pred hheeecCCcEEEE-----ECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCccccc
Q ss_pred CCCCCCCCccEEEEeCCCCe--eEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCce
Q psy9754 156 GDKMNPVTDKVECYDPRTNT--WTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEW 233 (306)
Q Consensus 156 ~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W 233 (306)
... .+.-...|..+++ -+-+ ..+..||.+ ++++|+..-.. .++..+|+++++.
T Consensus 181 ~~~----~~gG~vidv~s~evl~~GL-smPhSPRWh-------dgrLwvldsgt-------------Gev~~vD~~~G~~ 235 (335)
T TIGR03032 181 EGR----RDGGCVIDIPSGEVVASGL-SMPHSPRWY-------QGKLWLLNSGR-------------GELGYVDPQAGKF 235 (335)
T ss_pred ccc----cCCeEEEEeCCCCEEEcCc-cCCcCCcEe-------CCeEEEEECCC-------------CEEEEEcCCCCcE
Q ss_pred EecccCCcccccceeeeeCCEEEEEe
Q psy9754 234 KFVTELVVPRHAHSASVLSSQILIIG 259 (306)
Q Consensus 234 ~~~~~~p~~~~~~~~~~~~~~i~v~G 259 (306)
+.+..+|....+-+.. |.+.++|
T Consensus 236 e~Va~vpG~~rGL~f~---G~llvVg 258 (335)
T TIGR03032 236 QPVAFLPGFTRGLAFA---GDFAFVG 258 (335)
T ss_pred EEEEECCCCCccccee---CCEEEEE
No 248
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=23.18 E-value=3.5e+02 Score=20.81 Aligned_cols=108 Identities=15% Similarity=0.254 Sum_probs=57.2
Q ss_pred CCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceee
Q psy9754 145 NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLD 224 (306)
Q Consensus 145 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~ 224 (306)
++++.++-|.. ...+..||.+...-..+ .. .++ .++.--.+++.++++|..... .++.
T Consensus 71 g~~favi~g~~-------~~~v~lyd~~~~~i~~~-~~--~~~--n~i~wsP~G~~l~~~g~~n~~----------G~l~ 128 (194)
T PF08662_consen 71 GNEFAVIYGSM-------PAKVTLYDVKGKKIFSF-GT--QPR--NTISWSPDGRFLVLAGFGNLN----------GDLE 128 (194)
T ss_pred CCEEEEEEccC-------CcccEEEcCcccEeEee-cC--CCc--eEEEECCCCCEEEEEEccCCC----------cEEE
Confidence 56777776532 24788999874443343 21 112 123333358888888865322 4688
Q ss_pred EEECCCCceEecccCCcccccceeeee--CCEEEEEeCccCccccccceEEEeeccc
Q psy9754 225 VFVSNEKEWKFVTELVVPRHAHSASVL--SSQILIIGGVTTVYKRTLKSVECWCFDR 279 (306)
Q Consensus 225 ~y~~~~~~W~~~~~~p~~~~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~yd~~~ 279 (306)
.||.. +.+.+........ ..+.. +|+.++....... ...-+.+.+|+...
T Consensus 129 ~wd~~--~~~~i~~~~~~~~--t~~~WsPdGr~~~ta~t~~r-~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 129 FWDVR--KKKKISTFEHSDA--TDVEWSPDGRYLATATTSPR-LRVDNGFKIWSFQG 180 (194)
T ss_pred EEECC--CCEEeeccccCcE--EEEEEcCCCCEEEEEEeccc-eeccccEEEEEecC
Confidence 99987 5555555443322 22222 7777776554311 11224556666544
No 249
>KOG1897|consensus
Probab=22.93 E-value=7.9e+02 Score=24.74 Aligned_cols=167 Identities=10% Similarity=0.170 Sum_probs=93.2
Q ss_pred eEEEEEEeecCceeeecccccccccceE-------------EEEeCc-cCcCCCCcccceeeceEEEEeCCC-CCeeeCC
Q psy9754 19 KLLVIWIMDIVTYDLSIERVSQRYDVKI-------------NSLAGG-VDPSSDEKTTDIVSNSVWSFNPNN-KQWTQEP 83 (306)
Q Consensus 19 ~~~~~~~~~~~~W~~~~~~p~~r~~~~~-------------i~v~GG-~~~~~~~~~~~~~~~~~~~~d~~t-~~W~~~~ 83 (306)
....+..||+++.+.+...+-.+..... .|++|- ...+... ......+..|..++ ++-+.+.
T Consensus 748 ~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~---ep~~GRIivfe~~e~~~L~~v~ 824 (1096)
T KOG1897|consen 748 EVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDEN---EPVNGRIIVFEFEELNSLELVA 824 (1096)
T ss_pred eEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCC---CcccceEEEEEEecCCceeeee
Confidence 3445778888888776544443333222 566663 3222211 11234555555545 6677777
Q ss_pred CCCCCccceeeEEECCEEEEEccCCCCCCCceeEEEeCCCCc-EEeccCCcccccceeeEEECCEEEEEcccCCCCCCCC
Q psy9754 84 NMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT-WEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPV 162 (306)
Q Consensus 84 ~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~-w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 162 (306)
.+....+-.+++..++++.+.=| ..+-.|+..+.+ -+.-.....+...-..-+.++.|++.-=..
T Consensus 825 e~~v~Gav~aL~~fngkllA~In-------~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~------- 890 (1096)
T KOG1897|consen 825 ETVVKGAVYALVEFNGKLLAGIN-------QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMR------- 890 (1096)
T ss_pred eeeeccceeehhhhCCeEEEecC-------cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccc-------
Confidence 77777777778888888776533 456667665552 111111111222222334577887742111
Q ss_pred CccEEEEeCCCCeeEEcccccCCcceeEEEEEEeCCEEEEEc
Q psy9754 163 TDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIG 204 (306)
Q Consensus 163 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~G 204 (306)
+-.+..|+...+...++ +.--.|+...++..+. +..|+.+
T Consensus 891 Sitll~y~~~eg~f~ev-ArD~~p~Wmtaveil~-~d~ylga 930 (1096)
T KOG1897|consen 891 SITLLQYKGDEGNFEEV-ARDYNPNWMTAVEILD-DDTYLGA 930 (1096)
T ss_pred eEEEEEEeccCCceEEe-ehhhCccceeeEEEec-CceEEee
Confidence 34678889899999999 4444566655555555 6666643
No 250
>KOG4649|consensus
Probab=22.82 E-value=4.4e+02 Score=21.82 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=34.1
Q ss_pred ceeEEEeCCCCc--EEeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCC--eeEEc
Q psy9754 114 SSVECYDPVAHT--WEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTN--TWTTL 179 (306)
Q Consensus 114 ~~~~~~d~~~~~--w~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~--~W~~~ 179 (306)
..+...|+.++. |+.+- ..|....++++++. .|+|.++ ..++..+.++. -|.-.
T Consensus 33 ~~~~avd~~sG~~~We~il---g~RiE~sa~vvgdf-VV~GCy~--------g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAIL---GVRIECSAIVVGDF-VVLGCYS--------GGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred ceEEEecCCCCcEEeehhh---CceeeeeeEEECCE-EEEEEcc--------CcEEEEEecchhheeeee
Confidence 557778988876 87653 34555566667776 6667655 34566666655 46554
No 251
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=22.62 E-value=2.4e+02 Score=18.70 Aligned_cols=72 Identities=10% Similarity=0.117 Sum_probs=33.8
Q ss_pred CEEEEEcCCCCCCCCC----cccccccceeeEEECCCCceEecccCCcccccceeeee--CCEEEEEeCccCccccccce
Q psy9754 198 EKLYIIGGASQTDATN----TQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVL--SSQILIIGGVTTVYKRTLKS 271 (306)
Q Consensus 198 ~~iyi~GG~~~~~~~~----~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~--~~~i~v~GG~~~~~~~~~~~ 271 (306)
+.||+.-......... --...+...+..|||.+++.+.+.. ...+...+.+ ++..+++..... .+
T Consensus 10 g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~---~L~fpNGVals~d~~~vlv~Et~~------~R 80 (89)
T PF03088_consen 10 GTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD---GLYFPNGVALSPDESFVLVAETGR------YR 80 (89)
T ss_dssp --EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE---EESSEEEEEE-TTSSEEEEEEGGG------TE
T ss_pred CEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh---CCCccCeEEEcCCCCEEEEEeccC------ce
Confidence 6788776644322110 0001134578999999999875542 2233333443 554444433222 46
Q ss_pred EEEeecc
Q psy9754 272 VECWCFD 278 (306)
Q Consensus 272 ~~~yd~~ 278 (306)
+..|-++
T Consensus 81 i~rywl~ 87 (89)
T PF03088_consen 81 ILRYWLK 87 (89)
T ss_dssp EEEEESS
T ss_pred EEEEEEe
Confidence 6666543
No 252
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=22.17 E-value=1.4e+02 Score=15.91 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=13.0
Q ss_pred eEEEEEEeCCEEEEEcCCC
Q psy9754 189 LATLVSVNNEKLYIIGGAS 207 (306)
Q Consensus 189 ~~~~~~~~~~~iyi~GG~~ 207 (306)
..++++..++.||+.|-..
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 4455555578999998654
No 253
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=21.92 E-value=4.3e+02 Score=21.35 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=30.6
Q ss_pred EEeCCCCcE-EeccCCcccccceeeEEECCEEEEEcccCCCCCCCCCccEEEEeCCCCeeEEc
Q psy9754 118 CYDPVAHTW-EDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTL 179 (306)
Q Consensus 118 ~~d~~~~~w-~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~ 179 (306)
.++...+++ .....+..+..-..++..++.|.+.. .+..+.+|+.+..=+++
T Consensus 120 ~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~----------~~~f~~idl~~~~~~~l 172 (275)
T PF00780_consen 120 EWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGT----------SKGFYLIDLNTGSPSEL 172 (275)
T ss_pred EEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEe----------CCceEEEecCCCCceEE
Confidence 344433455 55555555555556666677776653 35677788887665655
No 254
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=21.82 E-value=4.8e+02 Score=21.86 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=46.1
Q ss_pred CCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCcccccccceeeEEECCCCceEecccCCcccccceeeeeC
Q psy9754 173 TNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLS 252 (306)
Q Consensus 173 ~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~p~~~~~~~~~~~~ 252 (306)
-+.|+.+..+...+....+.... ..+.+++|+.. .+..-|-..++|++.....-...+++...++
T Consensus 31 p~p~~~velp~~s~~l~ia~~~~-g~~gwlVg~rg--------------tiletdd~g~tw~qal~~~gr~~f~sv~f~~ 95 (339)
T COG4447 31 PNPWTDVELPTLSPTLDIAFTES-GSHGWLVGGRG--------------TILETDDGGITWAQALDFLGRHAFHSVSFLG 95 (339)
T ss_pred CCcceeeeccccCcccceeEeec-CcceEEEcCcc--------------eEEEecCCcccchhhhchhhhhheeeeeeec
Confidence 34576663222222233333333 38999999874 2344444567888654332222344444444
Q ss_pred CEEEEEeCccCccccccceEEEeeccccceeccC
Q psy9754 253 SQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGV 286 (306)
Q Consensus 253 ~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~ 286 (306)
.+=.++|- . ..++.=+....+|.++.
T Consensus 96 ~egw~vGe-~-------sqll~T~DgGqsWARi~ 121 (339)
T COG4447 96 MEGWIVGE-P-------SQLLHTTDGGQSWARIP 121 (339)
T ss_pred ccccccCC-c-------ceEEEecCCCcchhhch
Confidence 44444432 1 34555566667786653
No 255
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=21.59 E-value=1.2e+02 Score=14.90 Aligned_cols=26 Identities=15% Similarity=0.449 Sum_probs=15.8
Q ss_pred EECCEEEEEcccCCCCCCCCCccEEEEeCCCCe--eE
Q psy9754 143 EINDKIWIAGGYTGDKMNPVTDKVECYDPRTNT--WT 177 (306)
Q Consensus 143 ~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~ 177 (306)
..++.+|+... ...++.+|.++.+ |+
T Consensus 4 ~~~~~v~~~~~---------~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 4 LSDGTVYVGST---------DGTLYALDAKTGEILWT 31 (33)
T ss_pred EECCEEEEEcC---------CCEEEEEEcccCcEEEE
Confidence 34556666432 3578888887654 54
No 256
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=21.31 E-value=91 Score=15.50 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=9.9
Q ss_pred eeeeCCEEEEEeCccC
Q psy9754 248 ASVLSSQILIIGGVTT 263 (306)
Q Consensus 248 ~~~~~~~i~v~GG~~~ 263 (306)
.+++|+++..+||.+-
T Consensus 9 ~~vvD~~~a~vGg~nl 24 (28)
T PF00614_consen 9 FVVVDDRVAFVGGANL 24 (28)
T ss_dssp EEEETTTEEEEE---S
T ss_pred EEEEcCCEEEECceec
Confidence 4566888888998763
No 257
>KOG0639|consensus
Probab=20.60 E-value=6.6e+02 Score=23.00 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=61.1
Q ss_pred eeEEE--CCEEEEEccCCCCCCCceeEEEeCCCCcEEeccCCcc-cccceeeEEE-CCEEEEEcccCCCCCCCCCccEEE
Q psy9754 93 SFVSC--LDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKI-ARMGMAVAEI-NDKIWIAGGYTGDKMNPVTDKVEC 168 (306)
Q Consensus 93 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~w~~~~~~~~-~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~ 168 (306)
..|.+ ++.-.++||. ...+-++|+.+-+-+....++. +-.+.+.+.. +.++.+ ..+. ...|.+
T Consensus 469 RSckL~pdgrtLivGGe-----astlsiWDLAapTprikaeltssapaCyALa~spDakvcF-sccs-------dGnI~v 535 (705)
T KOG0639|consen 469 RSCKLLPDGRTLIVGGE-----ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCF-SCCS-------DGNIAV 535 (705)
T ss_pred eeeEecCCCceEEeccc-----cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceee-eecc-------CCcEEE
Confidence 34444 7888888985 2567778888877665555553 2333344443 444433 3322 256889
Q ss_pred EeCCCCeeEEcccccCCcceeEEEEEEe-CCEEEEEcCCCCCCCCCcccccccceeeEEECCCC
Q psy9754 169 YDPRTNTWTTLATKLRYPRYLATLVSVN-NEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEK 231 (306)
Q Consensus 169 ~d~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~~~~~~~~y~~~~~ 231 (306)
+|+.+.+-.+- ++--.-+.+++.+. ++.-+-.||.. +.+.++|+.+.
T Consensus 536 wDLhnq~~Vrq---fqGhtDGascIdis~dGtklWTGGlD-------------ntvRcWDlreg 583 (705)
T KOG0639|consen 536 WDLHNQTLVRQ---FQGHTDGASCIDISKDGTKLWTGGLD-------------NTVRCWDLREG 583 (705)
T ss_pred EEcccceeeec---ccCCCCCceeEEecCCCceeecCCCc-------------cceeehhhhhh
Confidence 99888865433 11111223333333 45555556654 55677777544
No 258
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=20.34 E-value=5.1e+02 Score=21.59 Aligned_cols=62 Identities=21% Similarity=0.320 Sum_probs=34.2
Q ss_pred EEECCEEEEEcccCCCCCCCCCccEEEEeCC-CCeeEEcccccCCcceeEEEEEEeCCEEEEEcCC
Q psy9754 142 AEINDKIWIAGGYTGDKMNPVTDKVECYDPR-TNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGA 206 (306)
Q Consensus 142 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~ 206 (306)
...+++.+++|=.. ....=..+.+..|.-. .+.|+.++..+....-..-.+.++ +++ ++||.
T Consensus 33 F~~~Gk~~IaGRVE-~Rdswe~S~V~fF~e~g~~~w~~v~~~~~~~LqDPF~t~I~-gel-ifGGv 95 (298)
T PF08950_consen 33 FEYNGKTVIAGRVE-KRDSWEHSEVRFFEETGKDEWTPVEGAPVFQLQDPFVTRIQ-GEL-IFGGV 95 (298)
T ss_dssp EEETTEEEEEEEEE--TT-SS--EEEEEEEEETTEEEE-TT---BS-EEEEEEEET-TEE-EEEEE
T ss_pred eeECCEEEEEeeee-cCCchhccEEEEEEEeCCCeEEECCCcceEEecCcceeeEC-CEE-EEeeE
Confidence 34678877776432 2111014677777655 889999954455555556677777 887 56665
No 259
>PRK10115 protease 2; Provisional
Probab=20.02 E-value=7.9e+02 Score=23.64 Aligned_cols=193 Identities=12% Similarity=0.048 Sum_probs=92.1
Q ss_pred eceEEEEeCCCCCeeeCCCCCCCccceeeEEE-CC-EEEEEccCCCCCCCceeEEEeCCCCcE--EeccCCcccccceee
Q psy9754 66 SNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSC-LD-KIYAIGGQDCKTLLSSVECYDPVAHTW--EDVAPLKIARMGMAV 141 (306)
Q Consensus 66 ~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~d~~~~~w--~~~~~~~~~~~~~~~ 141 (306)
..+++..|+.++.. ++... ......++-. ++ .+|+..-........+++++++.+..- +.+-.-.........
T Consensus 152 ~~~l~v~d~~tg~~--l~~~i-~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~ 228 (686)
T PRK10115 152 QYGIRFRNLETGNW--YPELL-DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSL 228 (686)
T ss_pred EEEEEEEECCCCCC--CCccc-cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEE
Confidence 45678888877642 22211 1112333333 44 455443221112447899999988842 222111111112222
Q ss_pred EEE-CCEEEEEcccCCCCCCCCCccEEEEeC--CCCeeEEcccccCCcceeEEEEEEeCCEEEEEcCCCCCCCCCccccc
Q psy9754 142 AEI-NDKIWIAGGYTGDKMNPVTDKVECYDP--RTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMY 218 (306)
Q Consensus 142 ~~~-~~~iyv~GG~~~~~~~~~~~~~~~~d~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~ 218 (306)
... +++..++...+.. .+.++.++. .+..|..+.+......+ ..... .+.+|+..-....
T Consensus 229 ~~s~d~~~l~i~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~ly~~tn~~~~--------- 291 (686)
T PRK10115 229 HKTTSKHYVVIHLASAT-----TSEVLLLDAELADAEPFVFLPRRKDHEY--SLDHY-QHRFYLRSNRHGK--------- 291 (686)
T ss_pred EEcCCCCEEEEEEECCc-----cccEEEEECcCCCCCceEEEECCCCCEE--EEEeC-CCEEEEEEcCCCC---------
Confidence 222 4443334433322 356777773 23444333122222222 22233 3788887643211
Q ss_pred ccceeeEEECC-CCceEecccCCcccccceeeeeCCEEEEEeCccCccccccceEEEeeccccceec
Q psy9754 219 SVSDLDVFVSN-EKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIK 284 (306)
Q Consensus 219 ~~~~~~~y~~~-~~~W~~~~~~p~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~yd~~~~~W~~ 284 (306)
...+...++. ..+|+.+-+......--.+...++.|++..-... ...+++++..++....
T Consensus 292 -~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g-----~~~l~~~~~~~~~~~~ 352 (686)
T PRK10115 292 -NFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRG-----LTSLRQINRKTREVIG 352 (686)
T ss_pred -CceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCC-----EEEEEEEcCCCCceEE
Confidence 2446666766 5789877654223233344445777777654333 2567777776555544
Done!