RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9754
(306 letters)
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
Length = 534
Score = 108 bits (271), Expect = 2e-26
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 15/212 (7%)
Query: 49 LAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQD 108
GG++ ++ NSV S++ K W + P + YPRK ++IY IGG
Sbjct: 299 FIGGMNKNNL------SVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIY 352
Query: 109 CKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVEC 168
L++VE + P W + PL R V +N+ I++ GG K + + VEC
Sbjct: 353 NSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGI--SKNDELLKTVEC 410
Query: 169 YDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVS 228
+ TN W+ + L Y + ++ K+Y+IGG S D + ++ +
Sbjct: 411 FSLNTNKWSKGS-PLPISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNI-----VESYNP 463
Query: 229 NEKEWKFVTELVVPRHAHSASVLSSQILIIGG 260
+W ++ L PR S + +++I ++GG
Sbjct: 464 VTNKWTELSSLNFPRINASLCIFNNKIYVVGG 495
Score = 102 bits (256), Expect = 2e-24
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 3/162 (1%)
Query: 62 TDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGG-QDCKTLLSSVECYD 120
I N+V S+ P +W +EP + +PR V+ + IY IGG LL +VEC+
Sbjct: 353 NSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFS 412
Query: 121 PVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLA 180
+ W +PL I+ G + KI++ GG + V + VE Y+P TN WT L+
Sbjct: 413 LNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472
Query: 181 TKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSD 222
+ L +PR A+L NN K+Y++GG N ++Y
Sbjct: 473 S-LNFPRINASLCIFNN-KIYVVGGDKYEYYINEIEVYDDKT 512
Score = 80.2 bits (198), Expect = 9e-17
Identities = 62/258 (24%), Positives = 101/258 (39%), Gaps = 26/258 (10%)
Query: 16 EGIKLLVIWIMDIV--TYDLSIERVSQRYDVKINSLAGGVDPSS------DEKTTDIVSN 67
EGIK L W + I + + Y K N S+ T I +
Sbjct: 205 EGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKILPRSSTFGSIIYIHITMSIFTY 264
Query: 68 SVWSFNPNNKQWTQEPNMTYPRKIFSFVSCL--DKIYAIGGQDCKTLLS-SVECYDPVAH 124
+ + + ++ Y + F S + + IY IGG + L SV YD
Sbjct: 265 NYITNYSPLSEINTIIDIHYV---YCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTK 321
Query: 125 TWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLR 184
+W V L R V N++I++ GG + VE + P + W L
Sbjct: 322 SWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSI---SLNTVESWKPGESKWR-EEPPLI 377
Query: 185 YPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRH 244
+PRY +V+VNN +Y+IGG S+ D + ++ F N +W + L + +
Sbjct: 378 FPRYNPCVVNVNNL-IYVIGGISKND-------ELLKTVECFSLNTNKWSKGSPLPISHY 429
Query: 245 AHSASVLSSQILIIGGVT 262
A +I +IGG++
Sbjct: 430 GGCAIYHDGKIYVIGGIS 447
Score = 72.5 bits (178), Expect = 3e-14
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 61 TTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGG---QDCKTLLSSVE 117
D + +V F+ N +W++ + + KIY IGG D + + VE
Sbjct: 400 KNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVE 459
Query: 118 CYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWT 177
Y+PV + W +++ L R+ ++ N+KI++ GG K +++E YD +TNTWT
Sbjct: 460 SYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGD---KYEYYINEIEVYDDKTNTWT 516
Score = 45.5 bits (108), Expect = 2e-05
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 49 LAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQD 108
+ GG+ + K V N V S+NP +WT+ ++ +PR S +KIY +GG
Sbjct: 442 VIGGISYIDNIK----VYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDK 497
Query: 109 CKTLLSSVECYDPVAHTWE 127
+ ++ +E YD +TW
Sbjct: 498 YEYYINEIEVYDDKTNTWT 516
Score = 43.2 bits (102), Expect = 1e-04
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 12/117 (10%)
Query: 168 CYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFV 227
+ T+ Y ++V N +Y IGG ++ SV+ + +
Sbjct: 268 TNYSPLSEINTIIDI-HYVYCFGSVVL--NNVIYFIGGMNK-------NNLSVNSVVSYD 317
Query: 228 SNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIK 284
+ K W V EL+ PR +V +++I +IGG+ +L +VE W W +
Sbjct: 318 TKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIY--NSISLNTVESWKPGESKWRE 372
>gnl|CDD|128874 smart00612, Kelch, Kelch domain.
Length = 47
Score = 62.2 bits (152), Expect = 4e-13
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 100 KIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEIND 146
KIY +GG D L SVE YDP + W + + R G VA IN
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Score = 48.3 bits (116), Expect = 4e-08
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 147 KIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNN 197
KI++ GG+ G VE YDP TN WT L + PR + +N
Sbjct: 1 KIYVVGGFDG---GQRLKSVEVYDPETNKWTPLP-SMPTPRSGHGVAVING 47
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 7/50 (14%)
Query: 50 AGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLD 99
GG D SV ++P +WT P+M PR
Sbjct: 5 VGGFDGG-------QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Score = 29.4 bits (67), Expect = 0.21
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 199 KLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVL 251
K+Y++GG + ++V+ +W + + PR H +V+
Sbjct: 1 KIYVVGGFDGGQRLKS--------VEVYDPETNKWTPLPSMPTPRSGHGVAVI 45
>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase, for which a structure has been
solved. The kelch motif forms a beta sheet. Several of
these sheets associate to form a beta propeller
structure as found in pfam00064, pfam00400 and
pfam00415.
Length = 46
Score = 53.4 bits (129), Expect = 7e-10
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 135 ARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLAT 181
R G V + KI++ GGY G VE YDP TNTW+ L +
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDG---GQSLSSVEVYDPETNTWSKLPS 44
Score = 51.1 bits (123), Expect = 4e-09
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 88 PRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLK 133
PR V KIY IGG D LSSVE YDP +TW + +
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 33.0 bits (76), Expect = 0.012
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 242 PRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKG 285
PR VL +I +IGG ++L SVE + + W K
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDG--GQSLSSVEVYDPETNTWSKL 42
Score = 31.5 bits (72), Expect = 0.044
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 50 AGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMT 86
GG D +SV ++P W++ P+M
Sbjct: 17 IGGYDGGQ-------SLSSVEVYDPETNTWSKLPSMP 46
Score = 30.3 bits (69), Expect = 0.11
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 186 PRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTEL 239
PR A +V + K+Y+IGG S+S ++V+ W + +
Sbjct: 1 PRSGAGVVVLGG-KIYVIGG--------YDGGQSLSSVEVYDPETNTWSKLPSM 45
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
Length = 557
Score = 53.9 bits (129), Expect = 5e-08
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTW 126
N V+ N NK + P M R FS D IYAIGGQ+ + ++ECY W
Sbjct: 320 NKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKW 379
Query: 127 EDVA--PLKIARMGMAVAEINDKIWIAGGYTG---------------DKMNPVTDKVECY 169
+ + P+ ++ GM V ++ I+I GG T ++ ++KV Y
Sbjct: 380 KMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRY 437
Query: 170 DPRTNTWTTL 179
D N W TL
Sbjct: 438 DTVNNIWETL 447
Score = 36.5 bits (84), Expect = 0.014
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 140 AVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEK 199
A A ++++I IAGGY + NP +KV + L ++ + ++V ++
Sbjct: 298 ASAIVDNEIIIAGGYNFN--NPSLNKVYKINIENKIHVELPPMIKNRCRFS--LAVIDDT 353
Query: 200 LYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIG 259
+Y IGG + T+ T + Y++ D +WK + ++ + ++ VL I IIG
Sbjct: 354 IYAIGGQNGTNVERTIECYTMGD--------DKWKMLPDMPIALSSYGMCVLDQYIYIIG 405
Query: 260 GVT 262
G T
Sbjct: 406 GRT 408
>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif.
Length = 50
Score = 44.4 bits (105), Expect = 1e-06
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 135 ARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPR 187
R G + + KI++ GGY+ + ++KV YDP T +W L L PR
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNG--SKASNKVLVYDPETGSWEKLPP-LPTPR 50
Score = 40.9 bits (96), Expect = 2e-05
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 88 PRKIFSFVSCLDKIYAIGGQDCK-TLLSSVECYDPVAHTWEDVAPLKIAR 136
PR S VS KIY GG + V YDP +WE + PL R
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 30.5 bits (69), Expect = 0.099
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 65 VSNSVWSFNPNNKQWTQEPNMTYPR 89
SN V ++P W + P + PR
Sbjct: 26 ASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 27.8 bits (62), Expect = 1.1
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 186 PRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPR 243
PR + VSV K+Y+ GG + + + + V+ W+ + L PR
Sbjct: 1 PRTGHSAVSVGG-KIYVFGG-------YSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 27.0 bits (60), Expect = 1.8
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 242 PRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKG 285
PR HSA + +I + GG + K + K V + + +W K
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNK-VLVYDPETGSWEKL 43
>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase;
Provisional.
Length = 376
Score = 48.9 bits (117), Expect = 1e-06
Identities = 49/193 (25%), Positives = 73/193 (37%), Gaps = 42/193 (21%)
Query: 135 ARMGMAVAEINDKIWIAGG---YTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYL-- 189
R A I+ K+++ GG + V D V YDP+TN+W L T R P L
Sbjct: 74 PREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAG 131
Query: 190 ATLVSVNNEKLYIIGG--------------ASQTDATNTQKM----YSVSDLDVFVSNE- 230
VS++N K YI GG A+ D T K+ + D F + E
Sbjct: 132 HVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEV 191
Query: 231 -------KEWKFVTELVVPRHAHSASVLS-SQILIIGGVTTVYKRTLKSVECWCF----D 278
+WK E A SA V+ +++ +I G K L++ +
Sbjct: 192 LSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEI---KPGLRTDAVKQGKFTGN 248
Query: 279 RQAWIKGVSGLPA 291
W + + LP
Sbjct: 249 NLKW-QKLPDLPP 260
Score = 33.4 bits (77), Expect = 0.14
Identities = 31/148 (20%), Positives = 50/148 (33%), Gaps = 44/148 (29%)
Query: 99 DKIYAIGG---QDCKT---LLSSVECYDPVAHTWEDVAPLKIARMGM----AVAEINDKI 148
K+Y GG + + + V YDP ++W+ + + +G+ AV+ N K
Sbjct: 85 GKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLD--TRSPVGLAGHVAVSLHNGKA 142
Query: 149 WIAGGY--------------TGDKMNPV-----------------TDKVECYDPRTNTWT 177
+I GG G P +V YDP TN W
Sbjct: 143 YITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWK 202
Query: 178 TLATKLRYPRYLATLVSVNNEKLYIIGG 205
+ +V + KL++I G
Sbjct: 203 NAGESPFLGTAGSAVV-IKGNKLWLING 229
Score = 32.7 bits (75), Expect = 0.22
Identities = 54/274 (19%), Positives = 94/274 (34%), Gaps = 71/274 (25%)
Query: 51 GGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIF---SFVSCLDKIYAIGG- 106
GG+ ++ E + + + V+ ++P W + + P + + K Y GG
Sbjct: 91 GGIGKTNSEGSPQVF-DDVYKYDPKTNSWQKLDTRS-PVGLAGHVAVSLHNGKAYITGGV 148
Query: 107 ---------QDCKT----------------------------LLSSVECYDPVAHTWEDV 129
+D +LS YDP + W++
Sbjct: 149 NKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLS----YDPSTNQWKNA 204
Query: 130 APLKIA-RMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTN--TWTTL-----AT 181
G AV +K+W+ G K TD V+ N W L A
Sbjct: 205 GESPFLGTAGSAVVIKGNKLWLINGEI--KPGLRTDAVKQGKFTGNNLKWQKLPDLPPAP 262
Query: 182 KLRYPRYLA-TLVSVNNEKLYIIGGA----SQTDATNTQKMYSVSDL------DVFVSNE 230
+A +N L + GGA ++ + N K+Y+ L +++
Sbjct: 263 GGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQN-GKLYAHEGLKKSWSDEIYALVN 321
Query: 231 KEWKFVTELVVPRHAHSASV-LSSQILIIGGVTT 263
+W+ V EL A+ SV ++ +L+IGG T
Sbjct: 322 GKWQKVGELPQGL-AYGVSVSWNNGVLLIGGETA 354
>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein.
Length = 470
Score = 48.8 bits (116), Expect = 2e-06
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 67 NSVWSFNPNNKQW---TQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVA 123
N +SF+ +W T PR S + + +Y GG L +++ Y+ V
Sbjct: 244 NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVD 303
Query: 124 HTWEDVA-PLK--IARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLA 180
W + P R G + + K+W+ G+ G ++ D V YDP + WT +
Sbjct: 304 KKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEV----DDVHYYDPVQDKWTQVE 359
Query: 181 T 181
T
Sbjct: 360 T 360
Score = 30.3 bits (68), Expect = 1.5
Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 99 DKIYAIGGQ--DCKTLLSSVECYDPVAHTWEDVAPL-----KIARMGMAVAEINDKIWIA 151
+KIY+ GG+ + + + +D TW ++P ++ +G+ + I +++
Sbjct: 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWS-ISPATGDVPHLSCLGVRMVSIGSTLYVF 234
Query: 152 GGYTGDKMNPVTDKVECYDPRTNTWTTLA--TKLRYPRYLATLVSVNNEKLYIIGGASQT 209
GG + + +D TN W L + PR ++ + + E +Y+ GG S T
Sbjct: 235 GGRDASRQ---YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSM-AADEENVYVFGGVSAT 290
Query: 210 DATNTQKMYSVSD 222
T Y++ D
Sbjct: 291 ARLKTLDSYNIVD 303
>gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional.
Length = 480
Score = 47.3 bits (112), Expect = 5e-06
Identities = 44/196 (22%), Positives = 79/196 (40%), Gaps = 26/196 (13%)
Query: 65 VSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAH 124
+ N+ + N + W P M PR S V +K+Y +GG T SVE +
Sbjct: 285 IHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPT---SVERWFHGDA 341
Query: 125 TWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLR 184
W ++ L R AVA IN+ I++ GG++ E P + W
Sbjct: 342 AWVNMPSLLKPRCNPAVASINNVIYVIGGHS-----ETDTTTEYLLPNHDQW-QFGPSTY 395
Query: 185 YPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRH 244
YP Y + + V +L+++G + + + + W + + + PR
Sbjct: 396 YPHYKSCAL-VFGRRLFLVG----------------RNAEFYCESSNTWTLIDDPIYPRD 438
Query: 245 AHSASVLSSQILIIGG 260
++ +++L+IGG
Sbjct: 439 NPELIIVDNKLLLIGG 454
Score = 28.9 bits (64), Expect = 3.7
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 74 PNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLK 133
PN+ QW P+ YP + SC + G+ + + E Y ++TW +
Sbjct: 383 PNHDQWQFGPSTYYPH----YKSCA----LVFGRRLFLVGRNAEFYCESSNTWTLIDDPI 434
Query: 134 IARMGMAVAEINDKIWIAGG-YTGDKMNPVTDKVECYDPRTNTW 176
R + +++K+ + GG Y G + D +E Y+ RT +W
Sbjct: 435 YPRDNPELIIVDNKLLLIGGFYRGSYI----DTIEVYNNRTYSW 474
>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family
protein. Members of this protein family show
essentially full-length homology, cyclically permuted,
to YjhT from Escherichia coli. YjhT was shown to act as
a mutarotase for sialic acid, and by this ability to be
able to act as a virulence factor. Members of the YjhT
family (TIGR03547) and this cyclically-permuted family
have multiple repeats of the beta-propeller-forming
Kelch repeat.
Length = 323
Score = 44.8 bits (106), Expect = 3e-05
Identities = 44/176 (25%), Positives = 64/176 (36%), Gaps = 38/176 (21%)
Query: 66 SNSVWSFNPNNKQWTQEPNMT-YPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAH 124
SN + FN ++W + P+ PR V +++Y GG D + Y P
Sbjct: 138 SNKFYCFNLETQEWEELPDFPGAPRVQPVCVKLQNELYVFGGGD-NIAYTDGYKYSPKTG 196
Query: 125 TWEDVA-----PLKIARMGMAVAEIND-KIWIAGGYTGDKMN------------------ 160
TWE VA I+ +G A IN+ + GG+ D N
Sbjct: 197 TWEKVADPLSDGEPISLLGAASIAINESLLLCIGGFNYDVFNDAVIRLATMKDESLKSYA 256
Query: 161 ------PV-----TDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGG 205
P DKV YD R+ W ++ R A L+ N L++I G
Sbjct: 257 AEYFLHPPDWYRWNDKVLIYDVRSGKWKSIGNSPFVARCGAALLLTGN-NLFVING 311
Score = 44.4 bits (105), Expect = 3e-05
Identities = 44/206 (21%), Positives = 73/206 (35%), Gaps = 43/206 (20%)
Query: 76 NKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSV--------------ECYDP 121
N +W + + Y + +S + IY IGG + SSV E
Sbjct: 50 NLKWVKAGQLPYAAAYGASISTENGIYYIGGSNSSESFSSVYRITLDESKEALIIETLPS 109
Query: 122 VAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLAT 181
+ ++ + + K+++ G G+ ++K C++ T W L
Sbjct: 110 LPFAMDN----------GSATYKDGKLYVGG---GNANGKPSNKFYCFNLETQEWEELPD 156
Query: 182 KLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVV 241
PR V + NE LY+ GG T+ K YS W+ V + +
Sbjct: 157 FPGAPRVQPVCVKLQNE-LYVFGGGDNIAYTDGYK-YSPKT--------GTWEKVADPLS 206
Query: 242 ---PRH---AHSASVLSSQILIIGGV 261
P A S ++ S +L IGG
Sbjct: 207 DGEPISLLGAASIAINESLLLCIGGF 232
Score = 43.6 bits (103), Expect = 6e-05
Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 11/142 (7%)
Query: 71 SFNPNNKQWTQEPNMTYPRKIFSFVSCL--DKIYAIGGQDCKTLLSSVECYDPVAHTWED 128
+ + + + E + P + + + K+Y GG + C++ WE+
Sbjct: 94 TLDESKEALIIETLPSLPFAMDNGSATYKDGKLYVGGGNANGKPSNKFYCFNLETQEWEE 153
Query: 129 VAPLKIARMGMAVAEI-NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRY-- 185
+ A V +++++ GG GD N Y P+T TW +A L
Sbjct: 154 LPDFPGAPRVQPVCVKLQNELYVFGG--GD--NIAYTDGYKYSPKTGTWEKVADPLSDGE 209
Query: 186 PRYL--ATLVSVNNEKLYIIGG 205
P L A +++N L IGG
Sbjct: 210 PISLLGAASIAINESLLLCIGG 231
>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain.
Length = 49
Score = 40.3 bits (95), Expect = 3e-05
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 135 ARMGMAVAEI-NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLAT 181
R I + ++++ GG D V V +D TNTWT L +
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGS--VLSDVWVFDLSTNTWTRLPS 46
Score = 29.2 bits (66), Expect = 0.30
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 49 LAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNM 85
L GG E V + VW F+ + WT+ P++
Sbjct: 17 LFGG------ENEDGSVLSDVWVFDLSTNTWTRLPSL 47
Score = 28.8 bits (65), Expect = 0.40
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 186 PRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWK 234
PR T S+ + +LY+ GG + + +SD+ VF + W
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGEN-------EDGSVLSDVWVFDLSTNTWT 42
Score = 28.0 bits (63), Expect = 0.71
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 88 PRKIFSFVSCLD-KIYAIGGQDCK-TLLSSVECYDPVAHTWEDVAPL 132
PR + S D ++Y GG++ ++LS V +D +TW + L
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47
>gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 381
Score = 42.0 bits (99), Expect = 2e-04
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 126 WEDVA--PLKIARMGMAVAEINDKIWIAGGY--TGDKMNPVTDKVECYDPRTNTWTTLAT 181
W +A P AR A I K+++ GGY + V + YDP TN+W L T
Sbjct: 72 WTKIADFPGG-ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT 130
Query: 182 KLRYPRYLATLVSV--NNEKLYIIGGASQ 208
R P L + N K+Y GG +Q
Sbjct: 131 --RSPTGLVGASTFSLNGTKIYFFGGVNQ 157
Score = 30.4 bits (69), Expect = 1.2
Identities = 41/224 (18%), Positives = 65/224 (29%), Gaps = 52/224 (23%)
Query: 76 NKQWTQEPNMT-YPRKIFSFVSCLDKIYAIGGQDCK-----TLLSSVECYDPVAHTWEDV 129
K WT+ + R K+Y GG + + YDP ++W +
Sbjct: 69 GKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKL 128
Query: 130 APLKIARMGMAVAEIND--KIWIAGGYTGDKMN---------------------PVTDK- 165
+ A + KI+ GG + N DK
Sbjct: 129 DTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKK 188
Query: 166 ---------VECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQK 216
V YDP TN W L Y + +V N+ I G T K
Sbjct: 189 AEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVK 248
Query: 217 MYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGG 260
F + +W +++L A + S++ + G
Sbjct: 249 QAD------FGGDNLKWLKLSDL-------PAPIGSNKEGVAGA 279
>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that Drosophila
ring canal kelch protein is related to Galactose Oxidase
for which a structure has been solved. The kelch motif
forms a beta sheet. Several of these sheets associate to
form a beta propeller structure as found in pfam00064,
pfam00400 and pfam00415.
Length = 48
Score = 37.3 bits (87), Expect = 3e-04
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 136 RMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLA 180
R A + K+++ GG TG + + + DP TN WT L
Sbjct: 2 RYPHASVVVGGKLYVVGGSTGL-GDLSSSDLWVLDPETNVWTELP 45
Score = 30.0 bits (68), Expect = 0.17
Identities = 8/44 (18%), Positives = 21/44 (47%)
Query: 242 PRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKG 285
PR+ H++ V+ ++ ++GG T + + + + W +
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTEL 44
Score = 29.3 bits (66), Expect = 0.26
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 186 PRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVT 237
PRY V KLY++GG++ S SDL V W +
Sbjct: 1 PRY-PHASVVVGGKLYVVGGSTGLGDL------SSSDLWVLDPETNVWTELP 45
Score = 28.1 bits (63), Expect = 0.81
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 93 SFVSCLDKIYAIGG--QDCKTLLSSVECYDPVAHTWEDVAPLK 133
+ V K+Y +GG S + DP + W ++ L
Sbjct: 6 ASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPALP 48
>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family. Members of
this protein family contain multiple copies of the
beta-propeller-forming Kelch repeat. All are full-length
homologs to YjhT of Escherichia coli, which has been
identified as a mutarotase for sialic acid. This protein
improves bacterial ability to obtain host sialic acid,
and thus serves as a virulence factor. Some bacteria
carry what appears to be a cyclically permuted homolog
of this protein.
Length = 346
Score = 40.8 bits (96), Expect = 5e-04
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 126 WEDVAPLK-IARMGMAVAEINDKIWIAGGYTGDKMNPVT---DKVECYDPRTNTWTTLAT 181
W+ +A R A I+ K+++ GG D V YDP+ N+W L T
Sbjct: 43 WQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT 102
Query: 182 KLRYPRYL--ATLVSVNNEKLYIIGG 205
R P L A+ S++N + Y GG
Sbjct: 103 --RSPVGLLGASGFSLHNGQAYFTGG 126
Score = 37.7 bits (88), Expect = 0.005
Identities = 43/236 (18%), Positives = 73/236 (30%), Gaps = 61/236 (25%)
Query: 76 NKQWTQEPNMT-YPRKIFSFVSCLDKIYAIGGQDCK------TLLSSVECYDPVAHTWED 128
+K W + + PR + K+Y GG + V YDP ++W+
Sbjct: 40 SKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQK 99
Query: 129 VA-PLKIARMGMAVAEI-NDKIWIAGGYTGDKMN-------------------------- 160
+ + +G + + N + + GG + +
Sbjct: 100 LDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQ 159
Query: 161 PVTD-----KVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQ----TDA 211
P D V YDP TN W L + +V N KL +I G + T
Sbjct: 160 PPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGN-KLLLINGEIKPGLRTAE 218
Query: 212 TNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHA-------HSASVLSSQILIIGG 260
F + EW + L P+ + A + + +L+ GG
Sbjct: 219 VKQYL---------FTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGG 265
Score = 32.7 bits (75), Expect = 0.19
Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 25/163 (15%)
Query: 67 NSVWSFNPNNKQWTQEPNMTY-PRKIFSFVSCLDKIYAIGGQDCKTLLSSVECY----DP 121
+V S++P+ QW + + V +K+ I G+ K L + E
Sbjct: 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE-IKPGLRTAEVKQYLFTG 226
Query: 122 VAHTWEDVAPLKIARM----GMAVA---EINDKIWIAGG--YTGDKMNPVTDKVECYDP- 171
W + PL + G+A A N + +AGG + G + N K+ ++
Sbjct: 227 GKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGL 286
Query: 172 ----RTNTWTTLATKLRY----PRYLATLVSV-NNEKLYIIGG 205
+ + K P+ LA VSV N + +IGG
Sbjct: 287 IKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGG 329
>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain.
Length = 48
Score = 36.5 bits (85), Expect = 6e-04
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 145 NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSV 195
KI++ GG + + YD TNTW L PR +
Sbjct: 1 GGKIYVFGGLGDG--GTRLNDLWVYDLDTNTWEKLGDLPG-PRAGHAATVI 48
Score = 35.3 bits (82), Expect = 0.002
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 99 DKIYAIGGQD-CKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEI 144
KIY GG T L+ + YD +TWE + L R G A I
Sbjct: 2 GKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
Score = 33.8 bits (78), Expect = 0.008
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 197 NEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVL 251
K+Y+ GG ++DL V+ + W+ + +L PR H+A+V+
Sbjct: 1 GGKIYVFGGLGDGGT-------RLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
Score = 27.3 bits (61), Expect = 1.3
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 66 SNSVWSFNPNNKQWTQEPNMTYPR 89
N +W ++ + W + ++ PR
Sbjct: 17 LNDLWVYDLDTNTWEKLGDLPGPR 40
>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein.
Length = 341
Score = 39.6 bits (92), Expect = 0.001
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
Query: 136 RMGMAVAEINDKIWIAGGYTGDKMNPVTDK-VECYDPRTNTWTTLATKLRYPR---YLAT 191
R +A + DK++ GG K N DK + +D T+TW+ PR
Sbjct: 23 RCSHGIAVVGDKLYSFGGEL--KPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVR 80
Query: 192 LVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVV-----PRHAH 246
+V+V KLYI GG + + Y + + EW F+T+L R H
Sbjct: 81 MVAVGT-KLYIFGGRDEKREFSDFYSYD--------TVKNEWTFLTKLDEEGGPEARTFH 131
Query: 247 SASVLSSQILIIGGVT 262
S + + + + GGV+
Sbjct: 132 SMASDENHVYVFGGVS 147
Score = 34.2 bits (78), Expect = 0.075
Identities = 36/152 (23%), Positives = 58/152 (38%), Gaps = 28/152 (18%)
Query: 45 KINSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWT-QEPNMTYPRKIFSFVSCL----- 98
K+ S G + P+ + ++ F+ N W+ N PR +SCL
Sbjct: 34 KLYSFGGELKPNEH------IDKDLYVFDFNTHTWSIAPANGDVPR-----ISCLGVRMV 82
Query: 99 ---DKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKI-----ARMGMAVAEINDKIWI 150
K+Y GG+D K S YD V + W + L AR ++A + +++
Sbjct: 83 AVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYV 142
Query: 151 AGGYT-GDKMNPVT--DKVECYDPRTNTWTTL 179
GG + G M +E Y+ W L
Sbjct: 143 FGGVSKGGLMKTPERFRTIEAYNIADGKWVQL 174
Score = 32.7 bits (74), Expect = 0.21
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 19/134 (14%)
Query: 67 NSVWSFNPNNKQWT-----QEPNMTYPRKIFSFVSCLDKIYAIGG------QDCKTLLSS 115
+ +S++ +WT E R S S + +Y GG +
Sbjct: 101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT 160
Query: 116 VECYDPVAHTW---EDVAPLKIARMGMAVAEINDKIWIAGGYT-----GDKMNPVTDKVE 167
+E Y+ W D R G A + KIW+ G+ G K + ++ V+
Sbjct: 161 IEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQ 220
Query: 168 CYDPRTNTWTTLAT 181
+DP + WT + T
Sbjct: 221 FFDPASGKWTEVET 234
>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase for which a structure has been solved.
The kelch motif forms a beta sheet. Several of these
sheets associate to form a beta propeller structure as
found in pfam00064, pfam00400 and pfam00415.
Length = 42
Score = 31.8 bits (73), Expect = 0.027
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 241 VPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFD 278
VPR H A V+ +I + GG T+ ++ V +
Sbjct: 3 VPRANHCAVVVGGEIYLYGGYTSGNGQSSDDV--YVLS 38
Score = 31.0 bits (71), Expect = 0.060
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 135 ARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTN 174
R + +I++ GGYT +D V
Sbjct: 4 PRANHCAVVVGGEIYLYGGYTSGNGQS-SDDVYVLSLPGF 42
>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 32.5 bits (74), Expect = 0.23
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 144 INDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTT---LATKLRYPRYLATLVSVNNEKL 200
I DK ++ GG + N ++ V+ D TN W + L T + P + V +N +++
Sbjct: 33 IGDKTYVIGG--NHEGNTLSIGVQILDKITNNWVSPIVLGTGPK-PCKGYSAVVLNKDRI 89
Query: 201 YIIGGASQTD 210
+I S D
Sbjct: 90 LVIKKGSAPD 99
>gnl|CDD|222124 pfam13433, Peripla_BP_5, Periplasmic binding protein domain. This
domain is found in a variety of bacterial periplasmic
binding proteins.
Length = 363
Score = 31.3 bits (72), Expect = 0.58
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 10/46 (21%)
Query: 139 MAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLR 184
+A+ EIN AGG G ++ PV DP ++ W A K R
Sbjct: 26 LAIEEINA----AGGVLGRQIEPV-----VVDPASD-WALFAEKAR 61
>gnl|CDD|188097 TIGR00931, antiport_nhaC, Na+/H+ antiporter NhaC. A single member
of the NhaC family, a protein from Bacillus firmus, has
been functionally characterized.It is involved in pH
homeostasis and sodium extrusion. Members of the NhaC
family are found in both Gram-negative bacteria and
Gram-positive bacteria. Intriguingly, archaeal homolog
ArcD (just outside boundaries of family) has been
identified as an arginine/ornithine antiporter
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 454
Score = 30.5 bits (69), Expect = 1.2
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 28/106 (26%)
Query: 125 TWEDVAPLKIARMGMAVA-EINDKIW----IAGGYTGDKMNPVTD---------KVECYD 170
+W V + +A MG+ I+ I + G Y GDK++P++D V+ +D
Sbjct: 123 SWGTVGTIGVAMMGIGTGLGIDLAIAAGAVVCGAYFGDKLSPLSDTTNFASGIVGVDLFD 182
Query: 171 P-RTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQ 215
R +TT+ P ++ T + L+++ G S +NTQ
Sbjct: 183 HIRHLLYTTV------PSFVITAI------LFLVIGRSY-ATSNTQ 215
>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated
serine/threonine kinase-like proteins. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MAST kinase subfamily
includes MAST kinases, MAST-like (MASTL) kinases, and
fungal kinases with similarity to Saccharomyces
cerevisiae Rim15 and Schizosaccharomyces pombe cek1.
MAST kinases contain an N-terminal domain of unknown
function, a central catalytic domain, and a C-terminal
PDZ domain that mediates protein-protein interactions.
MASTL kinases carry only a catalytic domain which
contains a long insert relative to other kinases. The
fungal kinases in this subfamily harbor other domains in
addition to a central catalytic domain, which also
contains an insert relative to MAST kinases like MASTL.
Rim15 contains a C-terminal signal receiver (REC) domain
while cek1 contains an N-terminal PAS domain. MAST
kinases are cytoskeletal associated kinases of unknown
function that are also expressed at neuromuscular
junctions and postsynaptic densities. The fungal
proteins Rim15 and cek1 are involved in the regulation
of meiosis and mitosis, respectively.
Length = 265
Score = 29.5 bits (67), Expect = 2.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 102 YAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEI 144
Y GG D +LL +V D EDVA + IA + +A+ +
Sbjct: 74 YLPGG-DLASLLENVGSLD------EDVARIYIAEIVLALEYL 109
>gnl|CDD|226708 COG4257, Vgb, Streptogramin lyase [Defense mechanisms].
Length = 353
Score = 29.1 bits (65), Expect = 3.0
Identities = 15/59 (25%), Positives = 22/59 (37%)
Query: 25 IMDIVTYDLSIERVSQRYDVKINSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEP 83
I I + E V Q +K S DP T + S+ F+P+ W + P
Sbjct: 212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYP 270
>gnl|CDD|226615 COG4130, COG4130, Predicted sugar epimerase [Carbohydrate
transport and metabolism].
Length = 272
Score = 29.0 bits (65), Expect = 3.0
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 32 DLSIERVSQRYDVKINSLAGGVDP----SSDEKT-TDIVS-NSVWSFNPNNKQWTQE 82
L + +V R D+ N++A G + EK IVS N+++ FN +WT+E
Sbjct: 28 RLGLSKVEIRNDLPSNAIADGTPAAEVKALAEKAGLTIVSINALYPFN----EWTEE 80
>gnl|CDD|214919 smart00932, Nfu_N, Scaffold protein Nfu/NifU N terminal. This
domain is found at the N terminus of NifU and NifU
related proteins, and in the human Nfu protein. Both of
these proteins are thought to be involved in the the
assembly of iron-sulphur clusters.
Length = 88
Score = 26.7 bits (60), Expect = 5.6
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 10/47 (21%)
Query: 229 NEKEWKFVTELVVP----------RHAHSASVLSSQILIIGGVTTVY 265
N KF+ V A AS L+ ++ I GV +V+
Sbjct: 8 NPNTLKFLPGEFVLPGGSAEFKSADEAAEASPLAQKLFEIPGVKSVF 54
>gnl|CDD|224200 COG1281, COG1281, Disulfide bond chaperones of the HSP33 family
[Posttranslational modification, protein turnover,
chaperones].
Length = 286
Score = 28.0 bits (63), Expect = 6.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 136 RMGMAVAEINDKIWIAGGYTGDKMNPVTDKVE 167
R+ + V D + AGG K+ +D+VE
Sbjct: 158 RVLLGVLVKEDSVKRAGGLLIQKLPDASDEVE 189
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.411
Gapped
Lambda K H
0.267 0.0821 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,131,783
Number of extensions: 1371033
Number of successful extensions: 1074
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1037
Number of HSP's successfully gapped: 68
Length of query: 306
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 209
Effective length of database: 6,635,264
Effective search space: 1386770176
Effective search space used: 1386770176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)