RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9754
(306 letters)
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 196 bits (500), Expect = 2e-61
Identities = 62/252 (24%), Positives = 98/252 (38%), Gaps = 20/252 (7%)
Query: 50 AGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDC 109
GG + S +V S++P QWT NM R +YA+GG D
Sbjct: 67 VGGFNGSLR-------VRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDG 119
Query: 110 KTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECY 169
T LSSVE Y+ ++ W VAP+ R + V + ++ GGY VECY
Sbjct: 120 STGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQC-LSTVECY 178
Query: 170 DPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSN 229
+ TN WT +A + R A + +NN LY +GG + ++Y +
Sbjct: 179 NATTNEWTYIAE-MSTRRSGAGVGVLNN-LLYAVGGHDGPLVRKSVEVYDPTT------- 229
Query: 230 EKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGL 289
W+ V ++ + R ++ + ++GG L SVE + W S +
Sbjct: 230 -NAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDG--SCNLASVEYYNPTTDKWTVVSSCM 286
Query: 290 PATILGHSSVAL 301
+
Sbjct: 287 STGRSYAGVTVI 298
Score = 173 bits (442), Expect = 1e-52
Identities = 54/236 (22%), Positives = 98/236 (41%), Gaps = 14/236 (5%)
Query: 66 SNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT 125
SV ++ ++W Q + R V ++A+GG + + +V+ YDPV
Sbjct: 29 IRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQ 88
Query: 126 WEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRY 185
W VA ++ R + A +N ++ GG+ G VE Y+ ++N W +A +
Sbjct: 89 WTSVANMRDRRSTLGAAVLNGLLYAVGGFDGST---GLSSVEAYNIKSNEWFHVAP-MNT 144
Query: 186 PRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHA 245
R + V LY +GG D + Q + +V + + + EW ++ E+ R
Sbjct: 145 RRSSVGVGVVGG-LLYAVGGY---DVASRQCLSTV---ECYNATTNEWTYIAEMSTRRSG 197
Query: 246 HSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPATILGHSSVAL 301
VL++ + +GG KSVE + AW + V+ + A+
Sbjct: 198 AGVGVLNNLLYAVGGHDG--PLVRKSVEVYDPTTNAWRQ-VADMNMCRRNAGVCAV 250
Score = 145 bits (369), Expect = 7e-42
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 8/148 (5%)
Query: 50 AGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDC 109
GG D +S + ++V +N +WT M+ R + +YA+GG D
Sbjct: 161 VGGYDVASRQ-----CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDG 215
Query: 110 KTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECY 169
+ SVE YDP + W VA + + R V +N +++ GG G VE Y
Sbjct: 216 PLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSC---NLASVEYY 272
Query: 170 DPRTNTWTTLATKLRYPRYLATLVSVNN 197
+P T+ WT +++ + R A + ++
Sbjct: 273 NPTTDKWTVVSSCMSTGRSYAGVTVIDK 300
Score = 143 bits (364), Expect = 4e-41
Identities = 48/218 (22%), Positives = 88/218 (40%), Gaps = 15/218 (6%)
Query: 84 NMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAE 143
+M+ ++ + ++ + +GGQ K + SVECYD W VA L R +
Sbjct: 1 SMSVRTRLRTPMNLPKLMVVVGGQAPKAI-RSVECYDFKEERWHQVAELPSRRCRAGMVY 59
Query: 144 INDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYII 203
+ ++ GG+ G V+ YDP + WT++A +R R +N LY +
Sbjct: 60 MAGLVFAVGGFNGSL---RVRTVDSYDPVKDQWTSVAN-MRDRRSTLGAAVLNG-LLYAV 114
Query: 204 GGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTT 263
GG + ++ + Y++ EW V + R + V+ + +GG
Sbjct: 115 GGFDGSTGLSSVEAYNIK--------SNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDV 166
Query: 264 VYKRTLKSVECWCFDRQAWIKGVSGLPATILGHSSVAL 301
++ L +VEC+ W ++ + G L
Sbjct: 167 ASRQCLSTVECYNATTNEWTY-IAEMSTRRSGAGVGVL 203
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 194 bits (494), Expect = 2e-60
Identities = 52/254 (20%), Positives = 92/254 (36%), Gaps = 23/254 (9%)
Query: 50 AGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDC 109
GG + +N W + PR + + KIY GG +
Sbjct: 61 LGGSQLFP--------IKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEV 112
Query: 110 -KTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVT-DKVE 167
+ L ECYD +W + R + E N I++ GG G+ ++ + E
Sbjct: 113 GNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCE 172
Query: 168 CYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFV 227
YDP T TWT L + R LV V + K++ +GG + + + Y +
Sbjct: 173 VYDPATETWTELC-PMIEARKNHGLVFVKD-KIFAVGGQNGLGGLDNVEYYDIK------ 224
Query: 228 SNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVS 287
EWK V+ + + + S + ++ G V L + + + W+ S
Sbjct: 225 --LNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGV--GRLGHILEYNTETDKWVA-NS 279
Query: 288 GLPATILGHSSVAL 301
+ A + + +
Sbjct: 280 KVRAFPVTSCLICV 293
Score = 170 bits (433), Expect = 2e-51
Identities = 52/236 (22%), Positives = 89/236 (37%), Gaps = 12/236 (5%)
Query: 66 SNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT 125
S FNP + WT R+ + V + +Y +GG + ++CY+ V +
Sbjct: 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFP-IKRMDCYNVVKDS 81
Query: 126 WEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRY 185
W R +A KI+ +GG + N ECYD RT +W T +
Sbjct: 82 WYSKLGPPTPRDSLAACAAEGKIYTSGGS--EVGNSALYLFECYDTRTESWHTKP-SMLT 138
Query: 186 PRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHA 245
R +V N +Y+ GG+ N ++ +V+ + W + ++ R
Sbjct: 139 QRCSHGMVEANG-LIYVCGGS---LGNNVSGRV-LNSCEVYDPATETWTELCPMIEARKN 193
Query: 246 HSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPATILGHSSVAL 301
H + +I +GG L +VE + W VS +P + A+
Sbjct: 194 HGLVFVKDKIFAVGGQNG--LGGLDNVEYYDIKLNEWKM-VSPMPWKGVTVKCAAV 246
Score = 142 bits (359), Expect = 2e-40
Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 11/163 (6%)
Query: 50 AGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDC 109
GG ++ V NS ++P + WT+ M RK V DKI+A+GGQ+
Sbjct: 155 CGGSLGNNVSGR---VLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNG 211
Query: 110 KTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECY 169
L +VE YD + W+ V+P+ + + A + +++ G+ G + Y
Sbjct: 212 LGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQG---VGRLGHILEY 268
Query: 170 DPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDAT 212
+ T+ W + +R + L+ V + G +T T
Sbjct: 269 NTETDKWVANSK-VRAFPVTSCLICV----VDTCGANEETLET 306
Score = 135 bits (341), Expect = 8e-38
Identities = 35/191 (18%), Positives = 70/191 (36%), Gaps = 23/191 (12%)
Query: 86 TYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEIN 145
T PR+ +I GG S ++P ++W D+ R A +
Sbjct: 4 TRPRRK----KHDYRIALFGGSQ----PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWD 55
Query: 146 DKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGG 205
+ ++I GG + +++CY+ ++W + PR + K+Y GG
Sbjct: 56 NVVYILGGSQLFPIK----RMDCYNVVKDSWYSKL-GPPTPRDSLAACAAEG-KIYTSGG 109
Query: 206 ASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGV--TT 263
+ ++ ++ + + + + W ++ R +H + I + GG
Sbjct: 110 SEVGNS-------ALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNN 162
Query: 264 VYKRTLKSVEC 274
V R L S E
Sbjct: 163 VSGRVLNSCEV 173
Score = 28.1 bits (63), Expect = 3.8
Identities = 8/60 (13%), Positives = 14/60 (23%), Gaps = 11/60 (18%)
Query: 242 PRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPATILGHSSVAL 301
PR I + GG +S + +W + + V
Sbjct: 6 PRRKKHDYR----IALFGG------SQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACVFW 54
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 192 bits (490), Expect = 7e-60
Identities = 69/250 (27%), Positives = 105/250 (42%), Gaps = 19/250 (7%)
Query: 50 AGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDC 109
GG + S D T S+++ +NP QW+ M+ PR IYA+GG
Sbjct: 76 VGGRNNSPDGNTD---SSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG 132
Query: 110 KTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECY 169
+SVE Y+P W VAP+ R+G+ VA +N ++ GG+ G + ECY
Sbjct: 133 CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN---RLNSAECY 189
Query: 170 DPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSN 229
P N W + + R A + ++N +Y GG D N+ + Y V
Sbjct: 190 YPERNEWRMIT-AMNTIRSGAGVCVLHN-CIYAAGGYDGQDQLNSVERYDVET------- 240
Query: 230 EKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGL 289
+ W FV + R A +V +I ++GG L SVEC+ D W V+ +
Sbjct: 241 -ETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG--HTFLDSVECYDPDTDTW-SEVTRM 296
Query: 290 PATILGHSSV 299
+ G
Sbjct: 297 TSGRSGVGVA 306
Score = 169 bits (431), Expect = 4e-51
Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 28/256 (10%)
Query: 50 AGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQ-- 107
AGG S + + ++NP+N W + ++ PR + +YA+GG+
Sbjct: 30 AGGYFRQS--------LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNN 81
Query: 108 --DCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDK 165
D T S+++CY+P+ + W AP+ + R + V I+ I+ GG G +
Sbjct: 82 SPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCI---HHNS 138
Query: 166 VECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDV 225
VE Y+P + W +A + R + +N LY +GG T+ N+ +
Sbjct: 139 VERYEPERDEWHLVAP-MLTRRIGVGVAVLNR-LLYAVGGFDGTNRLNS--------AEC 188
Query: 226 FVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKG 285
+ EW+ +T + R VL + I GG + L SVE + + + W
Sbjct: 189 YYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDG--QDQLNSVERYDVETETWTF- 245
Query: 286 VSGLPATILGHSSVAL 301
V+ +
Sbjct: 246 VAPMKHRRSALGITVH 261
Score = 163 bits (414), Expect = 1e-48
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 13/184 (7%)
Query: 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTW 126
NSV + P +W M R +YA+GG D L+S ECY P + W
Sbjct: 137 NSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW 196
Query: 127 EDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYP 186
+ + R G V +++ I+ AGGY G + VE YD T TWT +A +++
Sbjct: 197 RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQD---QLNSVERYDVETETWTFVAP-MKHR 252
Query: 187 RYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAH 246
R + ++Y++GG ++ ++ + + W VT + R
Sbjct: 253 RSALGITVHQG-RIYVLGGYDGHTFLDS--------VECYDPDTDTWSEVTRMTSGRSGV 303
Query: 247 SASV 250
+V
Sbjct: 304 GVAV 307
Score = 144 bits (366), Expect = 2e-41
Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 15/200 (7%)
Query: 76 NKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIA 135
+ + PR + IY GG ++L S +E Y+P TW +A L++
Sbjct: 3 SHHHHHHSSGLVPRGSHA-PKVGRLIYTAGGYFRQSL-SYLEAYNPSNGTWLRLADLQVP 60
Query: 136 RMGMAVAEINDKIWIAGGYTGDKM-NPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVS 194
R G+A + ++ GG N + ++CY+P TN W+ A + PR +
Sbjct: 61 RSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP-MSVPRNRIGVGV 119
Query: 195 VNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQ 254
++ +Y +GG+ N+ + Y EW V ++ R +VL+
Sbjct: 120 IDG-HIYAVGGSHGCIHHNSVERYEPE--------RDEWHLVAPMLTRRIGVGVAVLNRL 170
Query: 255 ILIIGGVTTVYKRTLKSVEC 274
+ +GG L S EC
Sbjct: 171 LYAVGGFD--GTNRLNSAEC 188
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 189 bits (482), Expect = 1e-58
Identities = 61/265 (23%), Positives = 107/265 (40%), Gaps = 26/265 (9%)
Query: 50 AGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQ-- 107
AGG+ + D K D +S F+ + +W P + PR +F L+ IY +GG+
Sbjct: 51 AGGLFYNEDNKE-DPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREI 109
Query: 108 -DCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKV 166
D + L SV CYD ++ W + PL G V D +++ GG D+ +K+
Sbjct: 110 KDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKC--LNKM 167
Query: 167 ECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVF 226
YDP+ W LA ++ R L + ++ + G + T T++ ++YS++D
Sbjct: 168 CVYDPKKFEWKELA-PMQTARSLFGATVHDG-RIIVAAGVTDTGLTSSAEVYSITD---- 221
Query: 227 VSNEKEWKFVTELVVPRHAHSASVLSSQILIIGG-------VTTVYKRTLKSVECWCFDR 279
+W R + S L + IGG + L + + +
Sbjct: 222 ----NKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEE 277
Query: 280 QAWIKGVSGLPATILGHSSVALPLK 304
+ W L + LP++
Sbjct: 278 KKW---EGVLREIAYAAGATFLPVR 299
Score = 167 bits (425), Expect = 4e-50
Identities = 48/213 (22%), Positives = 94/213 (44%), Gaps = 13/213 (6%)
Query: 51 GGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQ-DC 109
GG + E+ +SV ++ + +W + + Y + +S +D +Y IGG+
Sbjct: 105 GGREIKDGERCL----DSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSD 160
Query: 110 KTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECY 169
+ L+ + YDP W+++AP++ AR + +I +A G T +T E Y
Sbjct: 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTG---LTSSAEVY 217
Query: 170 DPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYS-VSDLDVFVS 228
N W R +LVS+ LY IGG + + + + + + ++D+ +
Sbjct: 218 SITDNKWAPFEA-FPQERSSLSLVSLVG-TLYAIGGFATLETESGELVPTELNDIWRYNE 275
Query: 229 NEKEWKFVTELVVPRHAHSASVLSSQILIIGGV 261
EK+W+ V +A A+ L ++ ++
Sbjct: 276 EEKKWEGVLRE--IAYAAGATFLPVRLNVLRLT 306
Score = 158 bits (401), Expect = 2e-46
Identities = 48/242 (19%), Positives = 87/242 (35%), Gaps = 19/242 (7%)
Query: 67 NSVWSFNPNNKQW-TQEPNMTYPRKIFSFVSCLDKIYAIGGQDC------KTLLSSVECY 119
+++P + + P+ S V+ ++++ GG + + +
Sbjct: 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQF 72
Query: 120 DPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTL 179
D + W + PL R + E + I++ GG D V CYD + W
Sbjct: 73 DHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES 132
Query: 180 ATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTEL 239
L Y Y T++S + +Y+IGG ++ + V+ + EWK + +
Sbjct: 133 D-PLPYVVYGHTVLSHMD-LVYVIGGKGSDRK-------CLNKMCVYDPKKFEWKELAPM 183
Query: 240 VVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPATILGHSSV 299
R A+V +I++ GVT S E + W P S V
Sbjct: 184 QTARSLFGATVHDGRIIVAAGVTD--TGLTSSAEVYSITDNKWAP-FEAFPQERSSLSLV 240
Query: 300 AL 301
+L
Sbjct: 241 SL 242
Score = 142 bits (359), Expect = 2e-40
Identities = 25/163 (15%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 51 GGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCK 110
GG N + ++P +W + M R +F +I G
Sbjct: 155 GGKGSDRK------CLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDT 208
Query: 111 TLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNP------VTD 164
L SS E Y + W R +++ + ++ GG+ + +
Sbjct: 209 GLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELN 268
Query: 165 KVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGAS 207
+ Y+ W + R Y A + +L ++
Sbjct: 269 DIWRYNEEEKKWEGVL---REIAYAAGATFLPV-RLNVLRLTK 307
Score = 131 bits (332), Expect = 2e-36
Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 19/181 (10%)
Query: 99 DKIYAIGGQDCKTLLSSVECYDPVAHTWEDV-APLKIARMGMAVAEINDKIWIAGGYTGD 157
D I+ I YDP A+ ++ + +++ +++++AGG +
Sbjct: 5 DLIFMISE-------EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYN 57
Query: 158 KMN---PVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNT 214
+ N P++ +D + W + L PR L L N +Y++GG D
Sbjct: 58 EDNKEDPMSAYFLQFDHLDSEWLGMPP-LPSPRCLFGLGEALN-SIYVVGGREIKDGERC 115
Query: 215 QKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVEC 274
SV + +W L + H+ + +IGG + ++ L +
Sbjct: 116 LD--SV---MCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGS-DRKCLNKMCV 169
Query: 275 W 275
+
Sbjct: 170 Y 170
Score = 88.6 bits (220), Expect = 2e-20
Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 18/118 (15%)
Query: 50 AGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQD- 108
A GV + +++S ++ + +W R S VS + +YAIGG
Sbjct: 202 AAGVTDTG-------LTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFAT 254
Query: 109 --------CKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDK 158
T L+ + Y+ WE V G + ++ + +
Sbjct: 255 LETESGELVPTELNDIWRYNEEEKKWEGVLREIAYAAGATF--LPVRLNVLRLTKMAE 310
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 188 bits (479), Expect = 4e-58
Identities = 62/264 (23%), Positives = 107/264 (40%), Gaps = 25/264 (9%)
Query: 50 AGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDC 109
GG+ + K + + + + + +W P + R +F DKIY + G+D
Sbjct: 62 VGGLYVDEENKDQP-LQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDL 120
Query: 110 KTL--LSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVE 167
+T L SV CYDPVA W +V L I G V N I+ GG T DK T++V
Sbjct: 121 QTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKK--CTNRVF 178
Query: 168 CYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFV 227
Y+P+ W LA ++ PR + + K+ I GG ++ + + + + +
Sbjct: 179 IYNPKKGDWKDLA-PMKTPRSMFGVAIHKG-KIVIAGGVTEDGLSASVEAFDLKT----- 231
Query: 228 SNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKR-------TLKSVECWCFDRQ 280
+W+ +TE R + S L+ + IGG + + + + D++
Sbjct: 232 ---NKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288
Query: 281 AWIKGVSGLPATILGHSSVALPLK 304
W L + L +
Sbjct: 289 EW---AGMLKEIRYASGASCLATR 309
Score = 165 bits (419), Expect = 3e-49
Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 14/213 (6%)
Query: 51 GGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQ-DC 109
G D ++ +SV ++P +W++ N+ + +S IY +GG+ D
Sbjct: 116 AGKDLQTEASL-----DSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDD 170
Query: 110 KTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECY 169
K + V Y+P W+D+AP+K R VA KI IAGG T D ++ VE +
Sbjct: 171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG---LSASVEAF 227
Query: 170 DPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSN 229
D +TN W + + R +LVS+ LY IGG + + + + + D++
Sbjct: 228 DLKTNKWEVMT-EFPQERSSISLVSLAG-SLYAIGGFAMIQLESKEFAPTEVN-DIWKYE 284
Query: 230 EKEWKFVTELVVPRHAHSASVLSSQI--LIIGG 260
+ + ++ L R+A AS L++++ +
Sbjct: 285 DDKKEWAGMLKEIRYASGASCLATRLNLFKLSK 317
Score = 159 bits (405), Expect = 4e-47
Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 19/223 (8%)
Query: 67 NSVWSFNPNNKQWTQE-PNMTYPRKIFSFVSCLDKIYAIGGQDC------KTLLSSVECY 119
+ +++P + PR S V+ +++Y +GG + L S
Sbjct: 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQL 83
Query: 120 DPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTL 179
D V+ W + PL AR + E++DKI++ G + D V CYDP W+ +
Sbjct: 84 DNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASL-DSVLCYDPVAAKWSEV 142
Query: 180 ATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTEL 239
L Y ++S N +Y +GG + + + ++ + +WK + +
Sbjct: 143 K-NLPIKVYGHNVISHNG-MIYCLGGKTDDKKC-------TNRVFIYNPKKGDWKDLAPM 193
Query: 240 VVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282
PR ++ +I+I GGVT SVE + W
Sbjct: 194 KTPRSMFGVAIHKGKIVIAGGVTE--DGLSASVEAFDLKTNKW 234
Score = 130 bits (328), Expect = 8e-36
Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 23/194 (11%)
Query: 86 TYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTW-EDVAPLKIARMGMAVAEI 144
PR + D I + ++ YDP+ + +I R ++
Sbjct: 6 DIPRH---GMFVKDLILLVND-------TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ 55
Query: 145 NDKIWIAGGYTGDKMN---PVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLY 201
+++++ GG D+ N P+ D ++ W L L R L L V++ K+Y
Sbjct: 56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP-LPSARCLFGLGEVDD-KIY 113
Query: 202 IIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGV 261
++ G D + SV + +W V L + + H+ + I +GG
Sbjct: 114 VVAG---KDLQTEASLDSV---LCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGK 167
Query: 262 TTVYKRTLKSVECW 275
T K+ V +
Sbjct: 168 TD-DKKCTNRVFIY 180
Score = 97.8 bits (244), Expect = 9e-24
Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 17/166 (10%)
Query: 136 RMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSV 195
R GM V D I + YDP N A + PR +++V+
Sbjct: 9 RHGMFV---KDLILLVNDTA----------AVAYDPMENECYLTALAEQIPRNHSSIVTQ 55
Query: 196 NNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQI 255
N ++Y++GG + Q + S + EW + L R + +I
Sbjct: 56 QN-QVYVVGGLYVDEENKDQPL--QSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKI 112
Query: 256 LIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPATILGHSSVAL 301
++ G + +L SV C+ W + V LP + GH+ ++
Sbjct: 113 YVVAGKDLQTEASLDSVLCYDPVAAKWSE-VKNLPIKVYGHNVISH 157
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 185 bits (472), Expect = 3e-57
Identities = 62/255 (24%), Positives = 100/255 (39%), Gaps = 26/255 (10%)
Query: 50 AGGVDPSSDEKTTDIVSNSVWSFNPNNKQ---WTQEPNMTYPRKIFSFVSCLDKIYAIGG 106
GG D S +SV + + W M R + + D IY GG
Sbjct: 68 IGGYDGRSR-------LSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGG 120
Query: 107 QDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKV 166
D +S+E YDP W + ++ AR G + + I+ GGY G + + V
Sbjct: 121 FDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDG---LNILNSV 177
Query: 167 ECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVF 226
E YDP T WT + + R A + +N+ +Y++GG T ++ + Y++
Sbjct: 178 EKYDPHTGHWTNVTP-MATKRSGAGVALLND-HIYVVGGFDGTAHLSSVEAYNIRT---- 231
Query: 227 VSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGV 286
W VT + PR A+VL ++ I G L S+EC+ +W + V
Sbjct: 232 ----DSWTTVTSMTTPRCYVGATVLRGRLYAIAGYD--GNSLLSSIECYDPIIDSW-EVV 284
Query: 287 SGLPATILGHSSVAL 301
+ + L
Sbjct: 285 TSMGTQRCDAGVCVL 299
Score = 165 bits (421), Expect = 1e-49
Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 24/236 (10%)
Query: 50 AGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDC 109
GG + V ++P ++W+ P++T R+ + VS D+IY IGG D
Sbjct: 20 VGGFGSQQS------PIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDG 73
Query: 110 KTLLSSVECYDPVAH---TWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKV 166
++ LSSVEC D A W VAP+ + R + D I+++GG+ G + +
Sbjct: 74 RSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSR---RHTSM 130
Query: 167 ECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVF 226
E YDP + W+ L ++ R A LV + +Y +GG + N+ ++ +
Sbjct: 131 ERYDPNIDQWSMLGD-MQTAREGAGLVVASG-VIYCLGGYDGLNILNS--------VEKY 180
Query: 227 VSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282
+ W VT + R ++L+ I ++GG L SVE + +W
Sbjct: 181 DPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG--TAHLSSVEAYNIRTDSW 234
Score = 137 bits (348), Expect = 8e-39
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
Query: 51 GGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCK 110
GG D + + NSV ++P+ WT M R D IY +GG D
Sbjct: 166 GGYDGLN-------ILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGT 218
Query: 111 TLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYD 170
LSSVE Y+ +W V + R + + +++ GY G+ + +ECYD
Sbjct: 219 AHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNS---LLSSIECYD 275
Query: 171 PRTNTWTTLATKLRYPRYLATLVSVN 196
P ++W + + + R A + +
Sbjct: 276 PIIDSWEVVTS-MGTQRCDAGVCVLR 300
Score = 127 bits (320), Expect = 8e-35
Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 20/203 (9%)
Query: 84 NMTYPRKIFSFVSCLDKIYAIGGQDCKTL-LSSVECYDPVAHTWEDVAPLKIARMGMAVA 142
+M PR + + + +GG + + VE YDP W + + R +A
Sbjct: 1 SMQGPRTRAR-LGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV 59
Query: 143 EINDKIWIAGGYTGDKMNPVTDKVECYDPRTN---TWTTLATKLRYPRYLATLVSVNNEK 199
++D+I++ GGY G VEC D + W ++A + R LA ++ +
Sbjct: 60 SLHDRIYVIGGYDGRS---RLSSVECLDYTADEDGVWYSVAP-MNVRRGLAGATTLGD-M 114
Query: 200 LYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIG 259
+Y+ GG + + ++ + N +W + ++ R V S I +G
Sbjct: 115 IYVSGGFDGSRRHTS--------MERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLG 166
Query: 260 GVTTVYKRTLKSVECWCFDRQAW 282
G L SVE + W
Sbjct: 167 GYD--GLNILNSVEKYDPHTGHW 187
Score = 91.2 bits (227), Expect = 2e-21
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 67 NSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTW 126
+SV ++N WT +MT PR ++YAI G D +LLSS+ECYDP+ +W
Sbjct: 222 SSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281
Query: 127 EDVAPLKIARMGMAVAEIND 146
E V + R V + +
Sbjct: 282 EVVTSMGTQRCDAGVCVLRE 301
Score = 33.4 bits (77), Expect = 0.068
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 242 PRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPATILGHSSVAL 301
PR + +L++GG + + + VE + Q W + + +SV+L
Sbjct: 5 PRTRARLGA-NEVLLVVGGFGS-QQSPIDVVEKYDPKTQEWSF-LPSITRKRRYVASVSL 61
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 130 bits (328), Expect = 1e-35
Identities = 39/272 (14%), Positives = 74/272 (27%), Gaps = 43/272 (15%)
Query: 49 LAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQ-EPNMTYPRKIFSFVSCLDKIYAIGGQ 107
+ GG+ +S+ T V N V +NP W + + K Y GG
Sbjct: 70 VFGGIGKNSEGLTQ--VFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGV 127
Query: 108 DCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVE 167
+ E + + + + +
Sbjct: 128 NQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAE--------DYFF--------NKFLL 171
Query: 168 CYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFV 227
+DP T W+ Y A +V+ + K ++I G ++ T ++ + F
Sbjct: 172 SFDPSTQQWSYAGESPWYGTAGAAVVNKGD-KTWLINGEAK-PGLRTDAVFEL----DFT 225
Query: 228 SNEKEWKFVTELVVP--RHAHSASVLSSQILIIGGVTTVYKR---------------TLK 270
N +W + + P A + + ++ GG R
Sbjct: 226 GNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSY 285
Query: 271 SVECWCFDRQAWIKGVSGLPATILGHSSVALP 302
S + + W K L S+
Sbjct: 286 STDIHLWHNGKWDK-SGELSQGRAYGVSLPWN 316
Score = 111 bits (280), Expect = 1e-28
Identities = 36/230 (15%), Positives = 62/230 (26%), Gaps = 34/230 (14%)
Query: 83 PNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPL-KIARMGMAV 141
P P K + D +Y G W +A R
Sbjct: 4 PETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKL--DTQAKDKKWTALAAFPGGPRDQATS 61
Query: 142 AEINDKIWIAGGYTGDKMNPVT--DKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEK 199
A I+ +++ GG + + V Y+P+TN+W L + N K
Sbjct: 62 AFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNG-K 120
Query: 200 LYIIGGASQTDATNTQKMYSVSDLD--------------------------VFVSNEKEW 233
Y+ GG +Q + + + D F + ++W
Sbjct: 121 AYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQW 180
Query: 234 KFVTEL-VVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAW 282
+ E + + +I G RT +V F
Sbjct: 181 SYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRT-DAVFELDFTGNNL 229
Score = 89.2 bits (221), Expect = 2e-20
Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 13/169 (7%)
Query: 129 VAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRY 188
+ + A ND ++I G G + + WT LA PR
Sbjct: 3 LPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKL-----DTQAKDKKWTALAAFPGGPRD 57
Query: 189 LATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEW-KFVTELVVPRHAHS 247
AT ++ LY+ GG + TQ +D+ + W K ++ + H
Sbjct: 58 QATSAFIDG-NLYVFGGIGKNSEGLTQ---VFNDVHKYNPKTNSWVKLMSHAPMGMAGHV 113
Query: 248 ASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPATILGH 296
V + + + GGV E + + + A
Sbjct: 114 TFVHNGKAYVTGGVN--QNIFNGYFEDLNEAGKDSTA-IDKINAHYFDK 159
Score = 70.4 bits (172), Expect = 6e-14
Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 23/134 (17%)
Query: 66 SNSVWSF--NPNNKQWTQEPNMTYPRKIFSFVSCL--DKIYAIGGQDCK----------- 110
+++V+ NN +W + ++ P + + + D + GG K
Sbjct: 216 TDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKN 275
Query: 111 ------TLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTD 164
S + + W+ L R N+ + I GG T
Sbjct: 276 YAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAG--GKAVT 333
Query: 165 KVECYDPRTNTWTT 178
+ N T
Sbjct: 334 DSVLITVKDNKVTV 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 100 bits (249), Expect = 1e-23
Identities = 32/264 (12%), Positives = 82/264 (31%), Gaps = 37/264 (14%)
Query: 66 SNSVWSFNPNNKQWTQE------PNMTYPRKIFSFVSCL--DKIYAIGGQD-CKTLLSSV 116
N + + + + + + R +F + +++ IGG+ LS
Sbjct: 411 VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDN 470
Query: 117 ECYDPVAHTWEDVAPLKIARMG-MAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNT 175
+D W + L R A + + + I GG T + Y+
Sbjct: 471 WIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEG------PAMLLYNVTEEI 524
Query: 176 WTTLATK--LRYPRYLATLVSVN---NEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNE 230
+ + K ++ + + + + + GG + + + D + +
Sbjct: 525 FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE---NAT 581
Query: 231 KEWKFVTEL---VVPRHAHSASVLSS-QILIIGGVTTVYKRTLKSVECWCFDRQAWI--- 283
+ + +L + R+ ++ ++LI+GG + ++ D +
Sbjct: 582 EPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGT-SPSGLFDRTNSIISLDPLSETLTS 640
Query: 284 -----KGVSGLPATILGHSSVALP 302
+ + G S V+
Sbjct: 641 IPISRRIWEDHSLMLAGFSLVSTS 664
Score = 92.5 bits (229), Expect = 4e-21
Identities = 42/233 (18%), Positives = 74/233 (31%), Gaps = 36/233 (15%)
Query: 49 LAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCL---DKIYAIG 105
L GG + W F+ ++W+ ++++ R F +C + +G
Sbjct: 456 LIGGRKAPHQ------GLSDNWIFDMKTREWSMIKSLSHTR--FRHSACSLPDGNVLILG 507
Query: 106 GQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVA-------EINDKIWIAGGYTGDK 158
G ++ Y+ ++DV P V+ I + GG+
Sbjct: 508 GVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQT 564
Query: 159 MNPVTDKVECYDPRTNTWTTLATKL------RYPRYLATLVSVNNEKLYIIGGASQTDAT 212
V+DK + T T + + RY + + + KL I+GG S +
Sbjct: 565 --TVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLF 622
Query: 213 NTQKMYSVSDLDVFVSNEKEWKFVTELVVP----RHAHSASVLSS-QILIIGG 260
+ S+ LD + S S I IIGG
Sbjct: 623 DR--TNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 85.4 bits (210), Expect = 1e-18
Identities = 39/257 (15%), Positives = 79/257 (30%), Gaps = 20/257 (7%)
Query: 66 SNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLD-KIYAIGG-QDCKTLLSSVECYDPVA 123
+ ++ ++ W P+M R S + D +++ IGG + E Y P +
Sbjct: 264 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323
Query: 124 HTWEDVAPLKIARMGMAVAE----INDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTL 179
TW + K+ M A + ++ W+ G G + + +
Sbjct: 324 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK 383
Query: 180 ATKLRYPRYL---------ATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNE 230
+ R A + K+ GG+ ++ + L ++
Sbjct: 384 SAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP 443
Query: 231 KEWKFVTELVVPRHAHSASVLSS-QILIIGGVTTVY----KRTLKSVECWCFDRQAWIKG 285
L R H++ VL I GG + + E + ++ + K
Sbjct: 444 NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 503
Query: 286 VSGLPATILGHSSVALP 302
+ S+ LP
Sbjct: 504 NPNSIVRVYHSISLLLP 520
Score = 66.1 bits (160), Expect = 3e-12
Identities = 31/231 (13%), Positives = 63/231 (27%), Gaps = 20/231 (8%)
Query: 55 PSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDC----- 109
PS+ + + + + KI GG
Sbjct: 367 PSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 426
Query: 110 -KTLLSSVECYDPV--AHTWEDVAPLKIAR-MGMAVAEINDKIWIAGG---YTGDKMNPV 162
T + +P +T L AR +V + +I GG + +
Sbjct: 427 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP 486
Query: 163 TDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSD 222
E Y P +T+ Y + + + + +++ GG D T D
Sbjct: 487 VFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNH-----FD 541
Query: 223 LDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRTLKSVE 273
+F N P+ ++ + + + G +T ++
Sbjct: 542 AQIFTPNYLYNSNGNLATRPKITRTS---TQSVKVGGRITISTDSSISKAS 589
Score = 63.8 bits (154), Expect = 2e-11
Identities = 29/194 (14%), Positives = 60/194 (30%), Gaps = 21/194 (10%)
Query: 42 YDVKINSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLD-K 100
KI + G D + TT+ ++ + + + R + V D
Sbjct: 409 VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS 468
Query: 101 IYAIGGQ------DCKTLLSSVECYDPVAHTWEDVAPLKIARM--GMAVAEINDKIWIAG 152
+ GGQ + T + + E Y P T+ P I R+ +++ + +++ G
Sbjct: 469 TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGG 528
Query: 153 GYTGDKMNPVTDKVECYDPRTNTWT------------TLATKLRYPRYLATLVSVNNEKL 200
G + + P + T ++ + + K
Sbjct: 529 GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQSVKVGGRITISTDSSISKA 588
Query: 201 YIIGGASQTDATNT 214
+I + T NT
Sbjct: 589 SLIRYGTATHTVNT 602
Score = 61.1 bits (147), Expect = 1e-10
Identities = 41/250 (16%), Positives = 81/250 (32%), Gaps = 27/250 (10%)
Query: 72 FNPNNKQWTQEPNMTYPRKIFSFVSCLD---KIYAIGGQDCKTLLSSVECYDPVAHTWED 128
++P+ + +F +D +I GG D K YD + +W
Sbjct: 224 WDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSSDSWIP 279
Query: 129 VAPLKIARMGMAVAEIND-KIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPR 187
+++AR + A ++D +++ GG E Y P + TWT+L P
Sbjct: 280 GPDMQVARGYQSSATMSDGRVFTIGGSWSG--GVFEKNGEVYSPSSKTWTSLPNAKVNPM 337
Query: 188 YLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHS 247
A + + + + + + + S + K + R
Sbjct: 338 LTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWY-YTSGSGDVKSAGKRQSNRGVAP 396
Query: 248 ASVLSS---------QILIIGGVTTVYKRTLKSVECWCFD------RQAWIKGVSGLPAT 292
++ + +IL GG + Y+ + + + +GL
Sbjct: 397 DAMCGNAVMYDAVKGKILTFGG-SPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA 455
Query: 293 ILGHSSVALP 302
H+SV LP
Sbjct: 456 RTFHTSVVLP 465
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.1 bits (95), Expect = 1e-04
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 15/42 (35%)
Query: 107 QDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKI 148
Q K L +S++ Y D AP A+A I +
Sbjct: 20 QALKKLQASLKLYAD------DSAP--------ALA-IKATM 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 2e-04
Identities = 44/273 (16%), Positives = 89/273 (32%), Gaps = 77/273 (28%)
Query: 49 LAGGVDPSSDEKTTDIVSNSVWSFNP-----NNKQWTQEPNMTYPRKIFSFVSCLDKIYA 103
++ V+PS + +++ + F N+ I + + L +
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND--------------IHALAAKLLQEND 113
Query: 104 IGGQDCKTLLSSVECY--------DPVAHTWEDVAPLKIARMGMAVAEINDKIW-IAGGY 154
K L+ + Y P A + G A ++ I GG
Sbjct: 114 TTLVKTKELI---KNYITARIMAKRPFDKKSNS-ALFRAVGEGNA------QLVAIFGG- 162
Query: 155 TGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNT 214
G+ + + + Y Y + L+ + E L +
Sbjct: 163 QGNTDDYFEELRDLYQ-------------TYHVLVGDLIKFSAETLS----ELIRTTLDA 205
Query: 215 QKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVL-SSQI---LIIGGVTTV--YKRT 268
+K+++ L++ EW L P + L S I LI GV + Y T
Sbjct: 206 EKVFT-QGLNI-----LEW-----LENPSNTPDKDYLLSIPISCPLI--GVIQLAHYVVT 252
Query: 269 LKSVECWCFDRQAWIKGVSGLPATILGHSSVAL 301
K + + ++++KG +G ++ ++VA+
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLV--TAVAI 283
Score = 42.0 bits (98), Expect = 2e-04
Identities = 39/217 (17%), Positives = 61/217 (28%), Gaps = 78/217 (35%)
Query: 78 QWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYD--PVA-HTWEDVAPLKI 134
Q +QE M G D L Y A W
Sbjct: 1624 QGSQEQGM--------------------GMD---L------YKTSKAAQDVWNRADNHFK 1654
Query: 135 ARMGMAVAEI-----NDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYL 189
G ++ +I + GG G ++ E Y T + KL+ +
Sbjct: 1655 DTYGFSILDIVINNPVNLTIHFGGEKGKRIR------ENYSAMIFE-TIVDGKLKTEKIF 1707
Query: 190 ATLVSVNNEKL--YIIGG-ASQTDAT-NTQ-KMYSVSDLDVFVSNEKEWKFVTELVVPRH 244
+ NE Y AT TQ + + + ++ K ++ ++P
Sbjct: 1708 KEI----NEHSTSYTFRSEKGLLSATQFTQPALTLME-----KAAFEDLK--SKGLIPAD 1756
Query: 245 A----HS----------ASVLSSQILIIGGVTTVYKR 267
A HS A V+S I V V+ R
Sbjct: 1757 ATFAGHSLGEYAALASLADVMS----IESLVEVVFYR 1789
Score = 40.4 bits (94), Expect = 6e-04
Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 66/193 (34%)
Query: 137 MGM------AVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLA 190
MGM A +W ++ + + T ++ L + P L
Sbjct: 1631 MGMDLYKTSKAA---QDVW--------------NRADNHFKDTYGFSILDIVINNPVNLT 1673
Query: 191 TLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTE-LVVPRHAHSAS 249
++ G + N M + +D + EK +K + E
Sbjct: 1674 ---------IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 250 VLSS----QILIIGGVTT---VYKRTLKSVECWCFDRQAWIKGVSGLPATILGHS----- 297
+LS+ Q + + LKS KG+ AT GHS
Sbjct: 1725 LLSATQFTQPAL---TLMEKAAF-EDLKS------------KGLIPADATFAGHSLGEYA 1768
Query: 298 ---SVA--LPLKS 305
S+A + ++S
Sbjct: 1769 ALASLADVMSIES 1781
Score = 40.0 bits (93), Expect = 0.001
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 31/121 (25%)
Query: 189 LATLVSVNNEKLYII-GGASQTDATNT----QKMYSVSDLDVFVSNEKEWKFVTELVVPR 243
L V N +L I GG Q + + + +Y + V +L+
Sbjct: 145 LFRAVGEGNAQLVAIFGG--QGNTDDYFEELRDLYQTYHV-----------LVGDLI--- 188
Query: 244 HAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPAT-ILGHSSVALP 302
SA LS I V+ + + W++ S P L ++ P
Sbjct: 189 -KFSAETLSELIRTTLDAEKVFTQG--------LNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 303 L 303
L
Sbjct: 240 L 240
Score = 37.0 bits (85), Expect = 0.008
Identities = 36/185 (19%), Positives = 58/185 (31%), Gaps = 59/185 (31%)
Query: 11 CKEGTEGIK---LLVIWIMDIVTYDLSIERVSQRYDVKINSLAGGVDPSSDEKTTDIVSN 67
E EG+ L + +L+ E+V + K NS P+ + V
Sbjct: 327 SLENNEGVPSPMLSIS--------NLTQEQVQDYVN-KTNSHL----PAGKQ-----VEI 368
Query: 68 SVWSFN-PNNKQWTQEPNMT-YPRKIFSFVSCLDKIYAIGGQD-CKTLLSS-----VECY 119
S+ N N ++ P+ ++ L K A G D + S +
Sbjct: 369 SL--VNGAKNL------VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 120 DPVA---HTWEDVAPLKIARMGMAVAEINDKIWIAG-GYTGDKMN-PVTDKVECYDPRTN 174
PVA H+ L + A IN + + + PV YD T
Sbjct: 421 LPVASPFHS-----HL----LVPASDLINKDLVKNNVSFNAKDIQIPV------YD--TF 463
Query: 175 TWTTL 179
+ L
Sbjct: 464 DGSDL 468
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.14
Identities = 37/238 (15%), Positives = 71/238 (29%), Gaps = 63/238 (26%)
Query: 22 VIWIMDIVTYDLSIERVSQRYDV--KINSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQW 79
+ W+ +++ + V + L +DP+ ++ D SN
Sbjct: 184 IFWL--------NLKNCNSPETVLEMLQKLLYQIDPNWTSRS-DHSSN-----IKLRIHS 229
Query: 80 TQEPNMTYPRKIFS---FVSCL---DKIY------AIGGQDCKTLLSS--VECYDPVAHT 125
Q R++ + +CL + A CK LL++ + D ++
Sbjct: 230 IQA----ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRFKQVTDFLSAA 284
Query: 126 WEDVAPLKIARMGMAVAEINDKI--WIAGGYTGD------KMNPVTDKV--ECYDPRTNT 175
L M + E+ + ++ D NP + E T
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 176 WTTLATKLRYPRYLATLVSVNNEKLYIIGGAS--QTDATNTQKMYSVSDLDVFVSNEK 231
W + N +KL I +S + +KM+ L VF +
Sbjct: 344 WD------NWKHV-------NCDKLTTIIESSLNVLEPAEYRKMF--DRLSVFPPSAH 386
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 31.2 bits (70), Expect = 0.40
Identities = 29/180 (16%), Positives = 49/180 (27%), Gaps = 11/180 (6%)
Query: 52 GVDPSSDEKT--TDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDC 109
+ SDEK T I ++ NP + T + P S + G
Sbjct: 88 YIHFLSDEKAYVTQIWDYRIFIINPKTYEITG--YIECPDMDMESGSTEQ-MVQYGKYVY 144
Query: 110 KTLLS---SVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIA--GGYTGDKMNPVTD 164
S + D D + I + + + +K+W GGY G
Sbjct: 145 VNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAP 203
Query: 165 KVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLD 224
+ D T T ++ + LY I ++ L+
Sbjct: 204 SLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLE 263
Score = 26.9 bits (59), Expect = 8.3
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 16/94 (17%)
Query: 114 SSVECYDP-----VAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVEC 168
+++ YDP + K+ + ++ + WI + +
Sbjct: 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIV--------VNNSHVIFA 68
Query: 169 YDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYI 202
D T T PRY+ +++EK Y+
Sbjct: 69 IDINTFKEVGRITGFTSPRYIH---FLSDEKAYV 99
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin,
transglutaminase fold, DNA-damage recognition, DNA
repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB:
2qsg_A* 2qsh_A*
Length = 533
Score = 30.3 bits (67), Expect = 0.89
Identities = 21/186 (11%), Positives = 46/186 (24%), Gaps = 32/186 (17%)
Query: 116 VECYDPVAHTWEDVAPLKIARMGM-----------AVAEINDKIWIAGGYTGDKMNPVTD 164
E +D + W V P+ + + + + Y D
Sbjct: 218 CEVWDKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRK--YGCRD 275
Query: 165 KVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLD 224
Y + K R + + + + +T + + Y +
Sbjct: 276 VTRRYAQW---MNSKVRKRRITKD-DFGEKWFRKVITALHHRKRTKIDDYEDQYFFQRDE 331
Query: 225 VFV--SNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTT---------VYKR----TL 269
+ ++ K V+ + ++ G + VY + L
Sbjct: 332 SEGIPDSVQDLKNHPYYVLEQDIKQTQIVKPGCKECGYLKVHGKVGKVLKVYAKRDIADL 391
Query: 270 KSVECW 275
KS W
Sbjct: 392 KSARQW 397
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane
helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1
PDB: 1h6i_A 1fqy_A 1ih5_A
Length = 271
Score = 29.7 bits (67), Expect = 0.95
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 120 DPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNP 161
D PL I G +VA +A YTG +NP
Sbjct: 160 DRRRRDLGGSGPLAI---GFSVALG---HLLAIDYTGCGINP 195
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter
release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Length = 341
Score = 29.2 bits (64), Expect = 1.7
Identities = 11/62 (17%), Positives = 22/62 (35%)
Query: 209 TDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVLSSQILIIGGVTTVYKRT 268
T+ ++S S +DVF + ++ + +L P + I V Y
Sbjct: 42 FQQTSEHALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVGHYMRRFAKTISNVLLQYADI 101
Query: 269 LK 270
+
Sbjct: 102 VS 103
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0
junctions, AQP0, lens MIP, lipid-protein interac
membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries}
SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Length = 263
Score = 28.4 bits (64), Expect = 2.6
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 120 DPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNP 161
D + L + G ++ YTG MNP
Sbjct: 150 DERRNGRLGSVALAV---GFSLTLG---HLFGMYYTGAGMNP 185
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional
crystal, electron diffraction, electron microscopy,
membrane protein; HET: PEE; 2.80A {Rattus norvegicus}
PDB: 2d57_A
Length = 301
Score = 28.2 bits (63), Expect = 3.3
Identities = 13/42 (30%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 120 DPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNP 161
D L I G +VA A YTG MNP
Sbjct: 157 DDKRTDVTGSVALAI---GFSVAIG---HLFAINYTGASMNP 192
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C
membrane protein, baculovirus expression system,
glycoprote membrane; 10.00A {Rattus norvegicus}
Length = 340
Score = 28.2 bits (63), Expect = 3.4
Identities = 13/42 (30%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 120 DPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNP 161
D L I G +VA A YTG MNP
Sbjct: 196 DDKRTDVTGSVALAI---GFSVAIG---HLFAINYTGASMNP 231
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal
transduction, multi-domai protein, transferase; 2.60A
{Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3
PDB: 2ch4_A* 3ur1_A
Length = 379
Score = 27.8 bits (63), Expect = 4.3
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 283 IKGVSGLPATILGHSSVAL 301
+K SG A ILG S+AL
Sbjct: 355 VKEFSG--AAILGDGSIAL 371
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_N
Length = 134
Score = 25.8 bits (57), Expect = 5.1
Identities = 1/18 (5%), Positives = 5/18 (27%)
Query: 182 KLRYPRYLATLVSVNNEK 199
+ +N ++
Sbjct: 35 RALVDAPDMVRCQINFKR 52
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein
structure initiative, center for structures of MEMB
proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo
sapiens}
Length = 223
Score = 27.2 bits (61), Expect = 5.6
Identities = 13/42 (30%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 120 DPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNP 161
D L I G +VA A YTG MNP
Sbjct: 148 DSKRTDVTGSIALAI---GFSVAIG---HLFAINYTGASMNP 183
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P
protein structure initiative, center for structures of
MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli}
PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A*
3nka_A* 3nkc_A*
Length = 234
Score = 27.2 bits (61), Expect = 6.1
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 130 APLKIARMGMAVAEINDKIWIAGGYTGDKMNP 161
AP+ I G+A I I+ T +NP
Sbjct: 165 APIAI---GLACTLI---HLISIPVTNTSVNP 190
>1wmg_A Netrin receptor UNC5H2; six helix bundle, death domain, apoptosis,
structural genomi NPPSFA; 2.10A {Mus musculus} SCOP:
a.77.1.2
Length = 103
Score = 26.0 bits (57), Expect = 6.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 170 DPRTNTWTTLATKLRYPRYLATLVS 194
+ R N W LA KL RYL +
Sbjct: 28 NSRGNDWRLLAQKLSMDRYLNYFAT 52
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 27.2 bits (61), Expect = 7.4
Identities = 7/36 (19%), Positives = 8/36 (22%), Gaps = 5/36 (13%)
Query: 137 MGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPR 172
MG A A I + PR
Sbjct: 347 MGEASAA-----LIRHQPLPAHLREHGLDEAMLSPR 377
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC,
substrate binding P structural genomics, protein
structure initiative; 2.00A {Aeropyrum pernix}
Length = 391
Score = 27.1 bits (60), Expect = 8.6
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 7/47 (14%)
Query: 139 MAVAEINDKIWIAGGYTGDKMNPVT--DKVECYDPRTNTWTTLATKL 183
+A N+K +N + Y+P T +
Sbjct: 30 LAFKYFNEKGIYTKDGVRVNINYIKRDYA---YNPTTA--EEYYREF 71
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel,
structu genomics, PSI-2, protein structure initiative;
2.01A {Agrobacterium tumefaciens str}
Length = 256
Score = 26.5 bits (59), Expect = 9.5
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 129 VAPLKIARMGMAVAEINDKIWIAGGYTGDKMNP 161
AP+ I G+A+ I I+ T +NP
Sbjct: 187 FAPIAI---GLALTLI---HLISIPVTNTSVNP 213
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.411
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,681,758
Number of extensions: 265221
Number of successful extensions: 720
Number of sequences better than 10.0: 1
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 74
Length of query: 306
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 213
Effective length of database: 4,105,140
Effective search space: 874394820
Effective search space used: 874394820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)