RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9754
(306 letters)
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1,
KEAP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 74.2 bits (180), Expect = 7e-16
Identities = 41/123 (33%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 66 SNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHT 125
NS + P +W M R + IYA GG D + L+SVE YD T
Sbjct: 163 LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET 222
Query: 126 WEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRY 185
W VAP+K R + + +I++ GGY G + D VECYDP T+TW+ + +
Sbjct: 223 WTFVAPMKHRRSALGITVHQGRIYVLGGYDG---HTFLDSVECYDPDTDTWSEVTR-MTS 278
Query: 186 PRY 188
R
Sbjct: 279 GRS 281
Score = 66.1 bits (159), Expect = 4e-13
Identities = 28/78 (35%), Positives = 37/78 (47%)
Query: 65 VSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAH 124
NSV ++ + WT M + R +IY +GG D T L SVECYDP
Sbjct: 209 QLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 268
Query: 125 TWEDVAPLKIARMGMAVA 142
TW +V + R G+ VA
Sbjct: 269 TWSEVTRMTSGRSGVGVA 286
Score = 62.2 bits (149), Expect = 8e-12
Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 13/181 (7%)
Query: 70 WSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDV 129
+ P +W M R +YA+GG D L+S ECY P + W +
Sbjct: 120 ERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI 179
Query: 130 APLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYL 189
+ R G V +++ I+ AGGY + VE YD T TWT +A ++ R
Sbjct: 180 TAMNTIRSGAGVCVLHNCIYAAGGY---DGQDQLNSVERYDVETETWTFVAPM-KHRRSA 235
Query: 190 ATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSAS 249
+ ++Y++GG ++ + Y W VT + R +
Sbjct: 236 LGITVHQG-RIYVLGGYDGHTFLDSVECYDPD--------TDTWSEVTRMTSGRSGVGVA 286
Query: 250 V 250
V
Sbjct: 287 V 287
Score = 61.1 bits (146), Expect = 2e-11
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 99 DKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDK 158
IY GG + LS +E Y+P TW +A L++ R G+A + ++ GG
Sbjct: 5 RLIYTAGGYF-RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSP 63
Query: 159 MNPVTDKVECYDPRTNTWTTLATKLRYPRY 188
+ + PR
Sbjct: 64 DGNTDSSALDCYNPMTNQWSPCAPMSVPRN 93
Score = 58.8 bits (140), Expect = 1e-10
Identities = 60/299 (20%), Positives = 101/299 (33%), Gaps = 69/299 (23%)
Query: 49 LAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQD 108
AGG S + + ++NP+N W + ++ PR + +YA+GG++
Sbjct: 9 TAGGYFRQS--------LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 60
Query: 109 CK----TLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYT--------- 155
T S+++CY+P+ + W AP+ + R + V I+ I+ GG
Sbjct: 61 NSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVE 120
Query: 156 -----------------------------------GDKMNPVTDKVECYDPRTNTWTTLA 180
G + ECY P N W +
Sbjct: 121 RYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT 180
Query: 181 TKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELV 240
V + +Y GG D N+ + Y + W FV +
Sbjct: 181 AMNTIRSGAGV--CVLHNCIYAAGGYDGQDQLNSVERY--------DVETETWTFVAPMK 230
Query: 241 VPRHAHSASVLSSQILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPATILGHSSV 299
R A +V +I ++GG L SVEC+ D W + V+ + + G
Sbjct: 231 HRRSALGITVHQGRIYVLGGYDG--HTFLDSVECYDPDTDTWSE-VTRMTSGRSGVGVA 286
Score = 53.0 bits (125), Expect = 1e-08
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 143 EINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYI 202
++ I+ AGGY ++ +E Y+P TW LA L+ PR V LY
Sbjct: 2 KVGRLIYTAGGYFRQSLS----YLEAYNPSNGTWLRLAD-LQVPRSGLAGCVVGG-LLYA 55
Query: 203 IGG 205
+GG
Sbjct: 56 VGG 58
Score = 27.2 bits (58), Expect = 2.4
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 255 ILIIGGVTTVYKRTLKSVECWCFDRQAWIKGVSGLPATILGHSSVAL 301
I GG ++++L +E + W++ ++ L G + +
Sbjct: 7 IYTAGGY---FRQSLSYLEAYNPSNGTWLR-LADLQVPRSGLAGCVV 49
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain
{Fungi (Fusarium sp.) [TaxId: 29916]}
Length = 387
Score = 67.5 bits (163), Expect = 2e-13
Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 9/129 (6%)
Query: 52 GVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCL-DKIYAIGGQDCK 110
D + TT+ ++ + + + R + V + GGQ
Sbjct: 252 SPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRG 311
Query: 111 TL------LSSVECYDPVAHTWEDVAPLKIARMGMAVAEI--NDKIWIAGGYTGDKMNPV 162
+ + E Y P T+ P I R+ +++ + + +++ GG
Sbjct: 312 IPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTN 371
Query: 163 TDKVECYDP 171
+ + P
Sbjct: 372 HFDAQIFTP 380
Score = 62.9 bits (151), Expect = 9e-12
Identities = 33/267 (12%), Positives = 67/267 (25%), Gaps = 39/267 (14%)
Query: 40 QRYDVKINSLAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPR---------- 89
+ Y G V + + + ++P++K WT PN
Sbjct: 120 RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 179
Query: 90 ----KIFSFVSCLDKIYAIGGQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVA--- 142
+ F ++ G + Y + + + R A
Sbjct: 180 RSDNHAWLFGWKKGSVFQAGPST-----AMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 234
Query: 143 -----------EINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRYPRYLAT 191
+ + N + NT L + R T
Sbjct: 235 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG-LYFARTFHT 293
Query: 192 LVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHAHSASVL 251
V + + +I GG + V +++V + + + R HS S+L
Sbjct: 294 SVVLPDGSTFITGGQRRGIPFEDST--PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLL 351
Query: 252 SS--QILIIGGVTT-VYKRTLKSVECW 275
++ GG + +
Sbjct: 352 LPDGRVFNGGGGLCGDCTTNHFDAQIF 378
Score = 58.3 bits (139), Expect = 3e-10
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 4/97 (4%)
Query: 121 PVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNP---VTDKVECYDPRTNTWT 177
P W L I A+ + ++ + Y D +DP T +
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 178 TLA-TKLRYPRYLATLVSVNNEKLYIIGGASQTDATN 213
T ++ + + N ++ + GG +
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 102
Score = 54.8 bits (130), Expect = 4e-09
Identities = 30/212 (14%), Positives = 63/212 (29%), Gaps = 10/212 (4%)
Query: 49 LAGGVDPSSDEKTTDIVSNSVWSFNPNNKQWTQEPNMTYPRKIFSFVSCLD---KIYAIG 105
+ + + S++P+ + +F +D +I G
Sbjct: 35 MWSSYRNDAFGGSPG-GITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTG 93
Query: 106 GQDCKTLLSSVECYDPVAHTWEDVAPLKIARMGMAVAEINDKIWIAGGYTGDKMNPVTDK 165
G D K YD + +W +++AR + A ++D +
Sbjct: 94 GNDAKK----TSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKN 148
Query: 166 VECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDV 225
E Y P + TWT+L P A + + + Q S +
Sbjct: 149 GEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAW-LFGWKKGSVFQAGPSTAMNWY 207
Query: 226 FVSNEKEWKFVTELVVPRHAHSASVLSSQILI 257
+ S + K + R ++ + ++
Sbjct: 208 YTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMY 239
Score = 50.6 bits (119), Expect = 9e-08
Identities = 17/184 (9%), Positives = 42/184 (22%), Gaps = 22/184 (11%)
Query: 74 PNNKQWTQEPNMTYPRKIFSFVSCLDKIYAIGGQDCKTL------LSSVECYDPVAHTWE 127
P +W ++ + ++ ++ +DP
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 128 DVAPLKIAR--MGMAVAEINDKIWIAGGYTGDKMNPVTDKVECYDPRTNTWTTLATKLRY 185
D ++ + + G K YD +++W
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK------TSLYDSSSDSWIPGPDMQVA 119
Query: 186 PRYLATLVSVNNEKLYIIGGASQTDATNTQKMYSVSDLDVFVSNEKEWKFVTELVVPRHA 245
Y + + G T + + +V+ + K W + V
Sbjct: 120 RGYQS--------SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPML 171
Query: 246 HSAS 249
+
Sbjct: 172 TADK 175
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 27.1 bits (59), Expect = 3.1
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 254 QILIIGGVTTVYKRTLKSVE-CWCFDRQ--AWIKGVSGLPATILGHS 297
I GV ++ E C +D + ++ G+ GH
Sbjct: 11 SQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHL 57
>d1jb7a2 b.40.4.3 (A:205-328) Telomere end binding protein alpha
subunit {Oxytricha nova [TaxId: 200597]}
Length = 124
Score = 25.3 bits (55), Expect = 5.3
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 159 MNPVTDKVECYDPRTNTWTTLATKLRYPRYLATLVSVNNEKLYIIGGASQTDATNTQK-- 216
++ T++++ D + TL+ KL++P E + I ++ D T+TQK
Sbjct: 32 LDEYTNELKLKDASGQVFYTLSLKLKFPHV------RTGEVVRI--RSATYDETSTQKKV 83
Query: 217 --MYSVSDLDVFVSNEK 231
+ S++ F+ + K
Sbjct: 84 LILSHYSNIITFIQSSK 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.411
Gapped
Lambda K H
0.267 0.0349 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,161,004
Number of extensions: 50327
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 18
Length of query: 306
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,240,546
Effective search space: 274160666
Effective search space used: 274160666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.3 bits)